Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1338430 | XP_039685680.1 | 84.355 | 799 | 105 | 3 | 1 | 779 | 1 | 799 | 0.0 | 1382 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1338430 | sp|Q9SZL8|FRS5_ARATH | 28.081 | 641 | 381 | 14 | 32 | 665 | 70 | 637 | 6.96e-70 | 248 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1338430 | D3YBB9 | 75.960 | 807 | 177 | 4 | 1 | 798 | 49 | 847 | 0.0 | 1274 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1338430 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1338430 | MtrunA17_Chr3g0088371 | 82.609 | 184 | 29 | 1 | 618 | 798 | 1 | 184 | 1.95e-102 | 313 |
| Msa1338430 | MtrunA17_Chr2g0324011 | 30.709 | 635 | 364 | 12 | 36 | 665 | 8 | 571 | 1.32e-100 | 323 |
| Msa1338430 | MtrunA17_Chr3g0082121 | 31.548 | 691 | 385 | 17 | 41 | 727 | 49 | 655 | 1.99e-99 | 323 |
| Msa1338430 | MtrunA17_Chr1g0202341 | 29.764 | 635 | 365 | 17 | 34 | 662 | 50 | 609 | 3.12e-80 | 271 |
| Msa1338430 | MtrunA17_Chr8g0363841 | 28.776 | 629 | 375 | 13 | 40 | 665 | 22 | 580 | 5.12e-75 | 257 |
| Msa1338430 | MtrunA17_Chr1g0203721 | 26.026 | 780 | 452 | 20 | 1 | 739 | 16 | 711 | 4.47e-73 | 256 |
| Msa1338430 | MtrunA17_Chr2g0296781 | 27.541 | 679 | 406 | 20 | 39 | 708 | 1 | 602 | 2.91e-68 | 239 |
| Msa1338430 | MtrunA17_Chr5g0448761 | 25.000 | 704 | 455 | 13 | 31 | 728 | 56 | 692 | 2.63e-67 | 238 |
| Msa1338430 | MtrunA17_Chr6g0458391 | 26.984 | 630 | 357 | 15 | 41 | 662 | 231 | 765 | 1.39e-65 | 233 |
| Msa1338430 | MtrunA17_Chr6g0477261 | 29.222 | 527 | 315 | 14 | 180 | 699 | 7 | 482 | 7.21e-65 | 229 |
| Msa1338430 | MtrunA17_Chr1g0164591 | 35.000 | 320 | 193 | 4 | 131 | 448 | 1 | 307 | 1.63e-61 | 210 |
| Msa1338430 | MtrunA17_Chr2g0287651 | 25.384 | 717 | 444 | 17 | 39 | 750 | 79 | 709 | 1.14e-60 | 221 |
| Msa1338430 | MtrunA17_Chr5g0441581 | 24.835 | 757 | 461 | 21 | 32 | 773 | 26 | 689 | 1.20e-58 | 212 |
| Msa1338430 | MtrunA17_Chr5g0440451 | 24.294 | 708 | 429 | 16 | 34 | 721 | 42 | 662 | 6.33e-56 | 207 |
| Msa1338430 | MtrunA17_Chr1g0207551 | 24.964 | 697 | 429 | 17 | 31 | 718 | 30 | 641 | 7.56e-55 | 203 |
| Msa1338430 | MtrunA17_Chr2g0329031 | 25.776 | 644 | 382 | 18 | 23 | 658 | 2 | 557 | 3.25e-54 | 200 |
| Msa1338430 | MtrunA17_Chr1g0172971 | 82.051 | 117 | 20 | 1 | 1 | 116 | 1 | 117 | 3.90e-54 | 196 |
| Msa1338430 | MtrunA17_Chr7g0258861 | 35.948 | 306 | 172 | 6 | 36 | 336 | 8 | 294 | 4.33e-54 | 189 |
| Msa1338430 | MtrunA17_Chr1g0198761 | 27.147 | 652 | 379 | 19 | 26 | 660 | 38 | 610 | 6.34e-53 | 197 |
| Msa1338430 | MtrunA17_Chr1g0196541 | 25.040 | 627 | 396 | 16 | 39 | 662 | 1 | 556 | 1.07e-52 | 196 |
| Msa1338430 | MtrunA17_Chr3g0118611 | 27.435 | 503 | 305 | 10 | 221 | 719 | 111 | 557 | 3.61e-52 | 194 |
| Msa1338430 | MtrunA17_Chr3g0080351 | 23.724 | 725 | 449 | 15 | 34 | 752 | 75 | 701 | 2.81e-49 | 187 |
| Msa1338430 | MtrunA17_Chr2g0287061 | 24.066 | 669 | 377 | 19 | 41 | 694 | 189 | 741 | 4.29e-48 | 183 |
| Msa1338430 | MtrunA17_Chr1g0203051 | 22.373 | 590 | 389 | 8 | 50 | 637 | 94 | 616 | 3.24e-47 | 178 |
| Msa1338430 | MtrunA17_Chr2g0290391 | 25.857 | 642 | 373 | 19 | 38 | 660 | 54 | 611 | 4.99e-47 | 178 |
| Msa1338430 | MtrunA17_Chr2g0276841 | 25.750 | 633 | 378 | 21 | 49 | 669 | 84 | 636 | 1.41e-44 | 171 |
| Msa1338430 | MtrunA17_Chr5g0448511 | 25.885 | 452 | 281 | 10 | 216 | 665 | 1 | 400 | 1.64e-44 | 169 |
| Msa1338430 | MtrunA17_Chr2g0291591 | 26.253 | 499 | 312 | 14 | 16 | 499 | 44 | 501 | 1.88e-42 | 163 |
| Msa1338430 | MtrunA17_Chr5g0431001 | 28.381 | 451 | 278 | 13 | 40 | 473 | 66 | 488 | 6.73e-42 | 160 |
| Msa1338430 | MtrunA17_Chr2g0291581 | 24.083 | 627 | 395 | 14 | 38 | 662 | 74 | 621 | 1.50e-41 | 162 |
| Msa1338430 | MtrunA17_Chr6g0475591 | 91.781 | 73 | 6 | 0 | 188 | 260 | 1 | 73 | 1.32e-40 | 143 |
| Msa1338430 | MtrunA17_Chr2g0294841 | 26.347 | 501 | 320 | 15 | 3 | 482 | 7 | 479 | 5.27e-35 | 142 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1338430 | AT4G38180.1 | 28.081 | 641 | 381 | 14 | 32 | 665 | 70 | 637 | 7.07e-71 | 248 |
| Msa1338430 | AT4G15090.1 | 25.409 | 673 | 421 | 14 | 50 | 718 | 66 | 661 | 3.99e-60 | 219 |
| Msa1338430 | AT4G15090.5 | 25.409 | 673 | 421 | 14 | 50 | 718 | 66 | 661 | 3.99e-60 | 219 |
| Msa1338430 | AT4G15090.3 | 25.409 | 673 | 421 | 14 | 50 | 718 | 66 | 661 | 3.99e-60 | 219 |
| Msa1338430 | AT4G15090.2 | 25.409 | 673 | 421 | 14 | 50 | 718 | 66 | 661 | 3.99e-60 | 219 |
| Msa1338430 | AT4G15090.4 | 25.409 | 673 | 421 | 14 | 50 | 718 | 66 | 661 | 3.99e-60 | 219 |
| Msa1338430 | AT2G27110.2 | 24.930 | 714 | 424 | 19 | 10 | 719 | 29 | 634 | 1.19e-53 | 200 |
| Msa1338430 | AT2G27110.1 | 24.930 | 714 | 424 | 19 | 10 | 719 | 29 | 634 | 1.19e-53 | 200 |
| Msa1338430 | AT2G27110.3 | 27.112 | 509 | 314 | 11 | 213 | 719 | 36 | 489 | 4.61e-53 | 197 |
| Msa1338430 | AT3G06250.2 | 25.118 | 633 | 351 | 16 | 34 | 661 | 189 | 703 | 6.33e-52 | 194 |
| Msa1338430 | AT3G06250.1 | 25.118 | 633 | 351 | 16 | 34 | 661 | 189 | 703 | 6.33e-52 | 194 |
| Msa1338430 | AT3G06250.3 | 25.118 | 633 | 351 | 16 | 34 | 661 | 189 | 703 | 6.33e-52 | 194 |
| Msa1338430 | AT1G76320.3 | 24.815 | 677 | 413 | 19 | 50 | 720 | 12 | 598 | 1.28e-50 | 189 |
| Msa1338430 | AT1G76320.1 | 24.852 | 676 | 412 | 19 | 50 | 719 | 12 | 597 | 3.27e-50 | 189 |
| Msa1338430 | AT1G76320.4 | 24.852 | 676 | 412 | 19 | 50 | 719 | 12 | 597 | 3.27e-50 | 189 |
| Msa1338430 | AT1G76320.2 | 24.852 | 676 | 412 | 19 | 50 | 719 | 12 | 597 | 4.01e-50 | 188 |
| Msa1338430 | AT3G22170.2 | 22.466 | 730 | 449 | 17 | 34 | 753 | 69 | 691 | 3.42e-48 | 184 |
| Msa1338430 | AT3G22170.1 | 22.466 | 730 | 449 | 17 | 34 | 753 | 69 | 691 | 3.42e-48 | 184 |
| Msa1338430 | AT5G18960.2 | 24.884 | 647 | 358 | 19 | 24 | 661 | 200 | 727 | 2.51e-46 | 178 |
| Msa1338430 | AT5G18960.1 | 24.884 | 647 | 358 | 19 | 24 | 661 | 200 | 727 | 2.51e-46 | 178 |
| Msa1338430 | AT4G38170.1 | 24.740 | 481 | 294 | 13 | 235 | 703 | 24 | 448 | 3.47e-44 | 168 |
| Msa1338430 | AT1G10240.2 | 24.477 | 621 | 381 | 19 | 49 | 659 | 62 | 604 | 2.04e-41 | 162 |
| Msa1338430 | AT1G10240.1 | 24.477 | 621 | 381 | 19 | 49 | 659 | 62 | 604 | 2.04e-41 | 162 |
| Msa1338430 | AT5G28530.1 | 24.379 | 644 | 380 | 20 | 40 | 660 | 60 | 619 | 5.86e-41 | 160 |
| Msa1338430 | AT2G32250.5 | 23.624 | 745 | 432 | 20 | 4 | 743 | 10 | 622 | 8.88e-41 | 161 |
| Msa1338430 | AT2G32250.6 | 23.624 | 745 | 432 | 20 | 4 | 743 | 10 | 622 | 1.37e-40 | 160 |
| Msa1338430 | AT2G32250.1 | 23.624 | 745 | 432 | 20 | 4 | 743 | 10 | 622 | 1.37e-40 | 160 |
| Msa1338430 | AT2G32250.3 | 23.624 | 745 | 432 | 20 | 4 | 743 | 10 | 622 | 1.37e-40 | 160 |
| Msa1338430 | AT2G32250.2 | 23.624 | 745 | 432 | 20 | 4 | 743 | 10 | 622 | 1.50e-40 | 160 |
| Msa1338430 | AT2G32250.4 | 23.624 | 745 | 432 | 20 | 4 | 743 | 10 | 622 | 1.50e-40 | 160 |
| Msa1338430 | AT5G28530.3 | 24.224 | 644 | 377 | 21 | 40 | 660 | 60 | 615 | 4.30e-40 | 158 |
| Msa1338430 | AT5G28530.2 | 24.224 | 644 | 377 | 21 | 40 | 660 | 60 | 615 | 4.30e-40 | 158 |
| Msa1338430 | AT2G32250.8 | 23.588 | 708 | 407 | 18 | 41 | 743 | 3 | 581 | 8.24e-40 | 158 |
| Msa1338430 | AT2G32250.7 | 23.621 | 707 | 408 | 18 | 41 | 743 | 3 | 581 | 1.15e-39 | 157 |
| Msa1338430 | AT1G80010.1 | 23.758 | 644 | 386 | 23 | 41 | 662 | 101 | 661 | 1.51e-35 | 144 |
| Msa1338430 | AT1G52520.1 | 22.080 | 625 | 407 | 16 | 41 | 662 | 91 | 638 | 3.32e-33 | 137 |
| Msa1338430 | AT4G19990.5 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 8.81e-28 | 120 |
| Msa1338430 | AT4G19990.5 | 38.614 | 101 | 48 | 3 | 591 | 689 | 495 | 583 | 3.75e-12 | 70.5 |
| Msa1338430 | AT4G19990.1 | 28.731 | 268 | 184 | 4 | 219 | 483 | 106 | 369 | 9.01e-28 | 120 |
| Msa1338430 | AT4G19990.1 | 38.614 | 101 | 48 | 3 | 591 | 689 | 438 | 526 | 3.82e-12 | 70.5 |
| Msa1338430 | AT4G19990.3 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 9.90e-28 | 120 |
| Msa1338430 | AT4G19990.3 | 38.614 | 101 | 48 | 3 | 591 | 689 | 495 | 583 | 3.69e-12 | 70.5 |
| Msa1338430 | AT4G19990.4 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 9.90e-28 | 120 |
| Msa1338430 | AT4G19990.4 | 38.614 | 101 | 48 | 3 | 591 | 689 | 495 | 583 | 3.69e-12 | 70.5 |
| Msa1338430 | AT4G19990.7 | 28.731 | 268 | 184 | 4 | 219 | 483 | 177 | 440 | 1.14e-27 | 120 |
| Msa1338430 | AT4G19990.7 | 38.614 | 101 | 48 | 3 | 591 | 689 | 509 | 597 | 4.32e-12 | 70.5 |
| Msa1338430 | AT4G19990.6 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 1.32e-27 | 120 |
| Msa1338430 | AT4G19990.6 | 38.614 | 101 | 48 | 3 | 591 | 689 | 495 | 583 | 4.02e-12 | 70.5 |
| Msa1338430 | AT4G19990.2 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 1.32e-27 | 120 |
| Msa1338430 | AT4G19990.2 | 38.614 | 101 | 48 | 3 | 591 | 689 | 495 | 583 | 4.02e-12 | 70.5 |
| Msa1338430 | AT5G28530.4 | 22.082 | 634 | 344 | 23 | 40 | 660 | 60 | 556 | 7.14e-22 | 101 |
Find 124 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGCTGAGTTGGACTTTA+AGG | 0.133287 | tig0002112:-2824 | Msa1338430:CDS |
| TTTAGATGAGTTAACTAATT+TGG | 0.176282 | tig0002112:-3133 | Msa1338430:CDS |
| AGTCGCTTCTTTGACCTAAT+TGG | 0.186128 | tig0002112:+1998 | None:intergenic |
| CTTTAGTCATTTCAACATTA+TGG | 0.194287 | tig0002112:-2866 | Msa1338430:CDS |
| CAACAAGATTATGCTCTATT+TGG | 0.198611 | tig0002112:-3917 | Msa1338430:CDS |
| TTCATTTCAGCTGCCTTTCT+TGG | 0.201003 | tig0002112:-3414 | Msa1338430:intron |
| CATCGTAAGAGTGTGTTATT+TGG | 0.276792 | tig0002112:-3381 | Msa1338430:CDS |
| TATGGTTTGAGGTTTCTTAT+TGG | 0.280533 | tig0002112:+3287 | None:intergenic |
| TTCTTTGACCTAATTGGATT+TGG | 0.299426 | tig0002112:+2004 | None:intergenic |
| AATCAGATTTCGACTACAAT+TGG | 0.318540 | tig0002112:-3092 | Msa1338430:CDS |
| TGTTCTTGAGGCAGGGAAAA+AGG | 0.322946 | tig0002112:-2152 | Msa1338430:CDS |
| ACCAGCCTGGTCTGTGTATA+TGG | 0.341000 | tig0002112:+3269 | None:intergenic |
| GCCGATATTTATTGTTTGTT+CGG | 0.341758 | tig0002112:+3867 | None:intergenic |
| TTGGTTTGAATATTATCTTC+TGG | 0.345646 | tig0002112:-1755 | Msa1338430:three_prime_UTR |
| TTTGCTTCTTCCGAGCTATA+AGG | 0.345757 | tig0002112:+1936 | None:intergenic |
| GGTTTCGAATGTTGATGTTT+TGG | 0.354913 | tig0002112:-2569 | Msa1338430:CDS |
| TATGCATTGGTCTTCAGTTT+GGG | 0.370760 | tig0002112:-2992 | Msa1338430:CDS |
| GATGAGTTTCTTATTTCTAA+AGG | 0.381584 | tig0002112:-2127 | Msa1338430:CDS |
| CTCAACGGTGTTCTTGAGGC+AGG | 0.386173 | tig0002112:-2160 | Msa1338430:CDS |
| AACAATAAATATCGGCCATT+AGG | 0.388497 | tig0002112:-3860 | Msa1338430:intron |
| ACCGAACAAACAATAAATAT+CGG | 0.389395 | tig0002112:-3868 | Msa1338430:CDS |
| TTTCAATTTATCATATCTAA+TGG | 0.390380 | tig0002112:-4780 | None:intergenic |
| GTATGCATTGGTCTTCAGTT+TGG | 0.392120 | tig0002112:-2993 | Msa1338430:CDS |
| GTCTTTAGTGCCAACATTCA+TGG | 0.395146 | tig0002112:+2276 | None:intergenic |
| TTCTCATACTCAACAAGAAC+TGG | 0.395633 | tig0002112:+4397 | None:intergenic |
| AAGAAAGACCAAATCCAATT+AGG | 0.397771 | tig0002112:-2012 | Msa1338430:CDS |
| TTTGGTCTTTCTTTGAACTT+TGG | 0.398856 | tig0002112:+2022 | None:intergenic |
| TTCCTTCAAATACTATTATG+AGG | 0.399583 | tig0002112:-2692 | Msa1338430:CDS |
| TAAAGAATCATGGAAGTCTT+TGG | 0.408500 | tig0002112:-4626 | Msa1338430:CDS |
| CATGTCGTATGTTTGAGAAC+CGG | 0.411671 | tig0002112:-2444 | Msa1338430:CDS |
| GATTATGATCTTCAAACCTT+GGG | 0.413114 | tig0002112:+2521 | None:intergenic |
| ATAACACTGGATTCTCTGTT+AGG | 0.417808 | tig0002112:-4555 | Msa1338430:CDS |
| CGATTATGATCTTCAAACCT+TGG | 0.425681 | tig0002112:+2520 | None:intergenic |
| CGAGAAGTAAATGAAGTTCA+AGG | 0.430014 | tig0002112:-4220 | Msa1338430:CDS |
| AGCTGGAATATATTTGAAGT+TGG | 0.433136 | tig0002112:-4338 | Msa1338430:CDS |
| TGGTCTGTGTATATGGTTTG+AGG | 0.447350 | tig0002112:+3276 | None:intergenic |
| GAAAGGGTTGGTTGTAAAGC+TGG | 0.447509 | tig0002112:-4355 | Msa1338430:CDS |
| CGCTTTAAAACATATTGTGC+AGG | 0.447633 | tig0002112:+2343 | None:intergenic |
| CGTTATGTTTGTAACAAAGA+AGG | 0.449439 | tig0002112:-4472 | Msa1338430:CDS |
| GCTTTAATAAATTCTAAAGC+TGG | 0.450264 | tig0002112:-4190 | Msa1338430:CDS |
| ATCTGAGAGTGGACAATTGA+CGG | 0.452529 | tig0002112:-4701 | Msa1338430:CDS |
| TGTTCTTTGCTCATGGCACA+TGG | 0.456128 | tig0002112:-3202 | Msa1338430:CDS |
| GGCCTACTTCGGACTTTAAG+TGG | 0.458978 | tig0002112:-3038 | Msa1338430:CDS |
| ATGTCGTATGTTTGAGAACC+GGG | 0.461344 | tig0002112:-2443 | Msa1338430:CDS |
| AATTCTTGATTGTTATGCAT+TGG | 0.467731 | tig0002112:-1774 | Msa1338430:three_prime_UTR |
| ACAAAATAAGAAATCGGATA+AGG | 0.469178 | tig0002112:-4506 | Msa1338430:CDS |
| GGGTTGTCACAGTCGACATT+GGG | 0.480993 | tig0002112:-2486 | Msa1338430:CDS |
| GAAGTGATGGGTCAAGGAGT+TGG | 0.484292 | tig0002112:-4145 | Msa1338430:CDS |
| CTCCTCATAATAGTATTTGA+AGG | 0.485089 | tig0002112:+2690 | None:intergenic |
| TTACAACCAACCCTTTCCTC+TGG | 0.485330 | tig0002112:+4361 | None:intergenic |
| TTTAATTATGCATATAACAC+TGG | 0.485542 | tig0002112:-4568 | Msa1338430:CDS |
| CTGTCTGTGAACCATCTGTT+GGG | 0.487793 | tig0002112:-2051 | Msa1338430:CDS |
| TCTAATGACAACTCGTCAAA+AGG | 0.488137 | tig0002112:-4077 | Msa1338430:CDS |
| CTCAAGTAGCACAAATGCTC+TGG | 0.489977 | tig0002112:+4250 | None:intergenic |
| CAATTCACAAAATAAGAAAT+CGG | 0.490263 | tig0002112:-4512 | Msa1338430:CDS |
| TATGAGGAGGACACAACAAA+AGG | 0.490908 | tig0002112:-2676 | Msa1338430:CDS |
| ATGATTGTCAAAACCAAGAA+AGG | 0.491378 | tig0002112:+3401 | None:intergenic |
| ATCAGATTTCGACTACAATT+GGG | 0.491708 | tig0002112:-3091 | Msa1338430:CDS |
| CGTCAAAAGGAGATGGTGGC+TGG | 0.492100 | tig0002112:-4064 | Msa1338430:CDS |
| ACATTATGGTTCAGAGAATG+AGG | 0.494022 | tig0002112:-2852 | Msa1338430:CDS |
| GACCGCATAAGCTGACTGTT+GGG | 0.496307 | tig0002112:+2772 | None:intergenic |
| GAGAACATCTTATGAAGTGA+TGG | 0.499875 | tig0002112:-4158 | Msa1338430:CDS |
| TGTCTTCTGCAGCATCAACT+TGG | 0.502977 | tig0002112:+3972 | None:intergenic |
| GCTGTCTGTGAACCATCTGT+TGG | 0.504047 | tig0002112:-2052 | Msa1338430:CDS |
| AAATGCTCTGGTTTATGTAA+TGG | 0.504865 | tig0002112:+4262 | None:intergenic |
| CTCATTCAAATCGTATGCAT+TGG | 0.507227 | tig0002112:-3005 | Msa1338430:CDS |
| ATCATAATCGACTTGATGAA+AGG | 0.507955 | tig0002112:-2507 | Msa1338430:CDS |
| TTTAAGTCCGAAAATCGAAA+AGG | 0.508080 | tig0002112:+4106 | None:intergenic |
| GAGGGATAATCATGCTGAGT+TGG | 0.508852 | tig0002112:-2833 | Msa1338430:CDS |
| ATTGGTCTTCAGTTTGGGTG+AGG | 0.509410 | tig0002112:-2987 | Msa1338430:CDS |
| TGTCTATAAGATATATAAGT+GGG | 0.514682 | tig0002112:-4302 | Msa1338430:CDS |
| GATCTTCAAACCTTGGGGAA+AGG | 0.519004 | tig0002112:+2527 | None:intergenic |
| TAAAGAATCGAACAAGTGAA+TGG | 0.519618 | tig0002112:+2884 | None:intergenic |
| TAACAAAGAAGGTTTCAAGA+AGG | 0.525236 | tig0002112:-4461 | Msa1338430:CDS |
| TCATAATCGACTTGATGAAA+GGG | 0.526860 | tig0002112:-2506 | Msa1338430:CDS |
| CATAATAGTATTTGAAGGAA+AGG | 0.529686 | tig0002112:+2695 | None:intergenic |
| GACAGAAATTCCTTATAGCT+CGG | 0.533906 | tig0002112:-1946 | Msa1338430:CDS |
| AGGGTTGTCACAGTCGACAT+TGG | 0.538587 | tig0002112:-2487 | Msa1338430:CDS |
| AATCGAACAAGTGAATGGTC+TGG | 0.540971 | tig0002112:+2889 | None:intergenic |
| ATGAGGAGGACACAACAAAA+GGG | 0.542065 | tig0002112:-2675 | Msa1338430:CDS |
| AACAAAGAAGGTTTCAAGAA+GGG | 0.545537 | tig0002112:-4460 | Msa1338430:CDS |
| CATTTAGTGATAAAGAATCA+TGG | 0.546005 | tig0002112:-4636 | Msa1338430:CDS |
| ACTTCAACAACGCACCAGCC+TGG | 0.557139 | tig0002112:+3256 | None:intergenic |
| CTGAAATCCACCATGAATGT+TGG | 0.557140 | tig0002112:-2286 | Msa1338430:CDS |
| AATGAAGCTCTCTCGAAACC+AGG | 0.565261 | tig0002112:-4010 | Msa1338430:CDS |
| TGAAAATTCAGTTATTGATG+CGG | 0.565546 | tig0002112:-4677 | Msa1338430:CDS |
| GTGATGGGTCAAGGAGTTGG+AGG | 0.568802 | tig0002112:-4142 | Msa1338430:CDS |
| TACACGTGTTTGCGCAGATG+CGG | 0.571672 | tig0002112:-2200 | Msa1338430:CDS |
| ATGTCTATAAGATATATAAG+TGG | 0.572287 | tig0002112:-4303 | Msa1338430:CDS |
| GGACCGCATAAGCTGACTGT+TGG | 0.579264 | tig0002112:+2771 | None:intergenic |
| TTTGGTGCAGTCCCAACAGA+TGG | 0.581566 | tig0002112:+2040 | None:intergenic |
| GAAGCAAAAGAAAGATGATG+AGG | 0.585686 | tig0002112:-1921 | Msa1338430:CDS |
| TGGTGTATACTTGTTTACTA+CGG | 0.585960 | tig0002112:+2750 | None:intergenic |
| ATATTAACTTCATCTGAGAG+TGG | 0.588105 | tig0002112:-4712 | Msa1338430:CDS |
| TCTTATGAAGTGATGGGTCA+AGG | 0.589029 | tig0002112:-4151 | Msa1338430:CDS |
| TCAACGGTGTTCTTGAGGCA+GGG | 0.590097 | tig0002112:-2159 | Msa1338430:CDS |
| ACCATATACACAGACCAGGC+TGG | 0.590176 | tig0002112:-3270 | Msa1338430:CDS |
| ATTTCTCAACGGTGTTCTTG+AGG | 0.591378 | tig0002112:-2164 | Msa1338430:CDS |
| GAGGCTTTAACAAATTAAGC+GGG | 0.594536 | tig0002112:-1902 | Msa1338430:exon |
| TTGAAGAAAACCTTTCCCCA+AGG | 0.594796 | tig0002112:-2537 | Msa1338430:CDS |
| TGAAGACTTAGAAGGCGTAA+CGG | 0.598405 | tig0002112:+2084 | None:intergenic |
| GACAACTCGTCAAAAGGAGA+TGG | 0.599038 | tig0002112:-4071 | Msa1338430:CDS |
| AGAACATCTTATGAAGTGAT+GGG | 0.601988 | tig0002112:-4157 | Msa1338430:CDS |
| AACTCGTCAAAAGGAGATGG+TGG | 0.603142 | tig0002112:-4068 | Msa1338430:CDS |
| ACGTGTTTGCGCAGATGCGG+AGG | 0.605934 | tig0002112:-2197 | Msa1338430:CDS |
| ATCCCAACAGTCAGCTTATG+CGG | 0.606153 | tig0002112:-2774 | Msa1338430:CDS |
| CTTCAAATACTATTATGAGG+AGG | 0.607664 | tig0002112:-2689 | Msa1338430:CDS |
| TTGATATCGTTGCGCTTCAG+TGG | 0.611060 | tig0002112:+2252 | None:intergenic |
| AGAACTGGACTGTCACATGT+TGG | 0.620791 | tig0002112:+4412 | None:intergenic |
| AGCCACTTAAAGTCCGAAGT+AGG | 0.621799 | tig0002112:+3036 | None:intergenic |
| GGGTCAAGGAGTTGGAGGCA+CGG | 0.621882 | tig0002112:-4137 | Msa1338430:CDS |
| GTTCTTTGCTCATGGCACAT+GGG | 0.625651 | tig0002112:-3201 | Msa1338430:CDS |
| TGAGGCTTTAACAAATTAAG+CGG | 0.628414 | tig0002112:-1903 | Msa1338430:exon |
| ATTATGATCTTCAAACCTTG+GGG | 0.630358 | tig0002112:+2522 | None:intergenic |
| TTTAGTGCCAACATTCATGG+TGG | 0.641441 | tig0002112:+2279 | None:intergenic |
| CATTATGGTTCAGAGAATGA+GGG | 0.643278 | tig0002112:-2851 | Msa1338430:CDS |
| GATTTCAGCTTATCGACAGA+CGG | 0.644926 | tig0002112:+2301 | None:intergenic |
| TGAATAAATGAAAAGCAAGA+TGG | 0.655697 | tig0002112:+2730 | None:intergenic |
| GCATCTGAAATATTTCTCAA+CGG | 0.661104 | tig0002112:-2175 | Msa1338430:CDS |
| CATGTCGACATAAGAAACCC+CGG | 0.663279 | tig0002112:+2425 | None:intergenic |
| TCAAACCATATACACAGACC+AGG | 0.671057 | tig0002112:-3274 | Msa1338430:CDS |
| TGTCGTATGTTTGAGAACCG+GGG | 0.673760 | tig0002112:-2442 | Msa1338430:CDS |
| ATGTTGATAATGATAATGAG+AGG | 0.683310 | tig0002112:-2591 | Msa1338430:CDS |
| TGTTGATAATGATAATGAGA+GGG | 0.689129 | tig0002112:-2590 | Msa1338430:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAATTATGCATATAACAC+TGG | - | tig0002112:1953-1972 | Msa1338430:CDS | 20.0% |
| !! | CAATTCACAAAATAAGAAAT+CGG | - | tig0002112:2009-2028 | Msa1338430:CDS | 20.0% |
| !! | ATGTCTATAAGATATATAAG+TGG | - | tig0002112:2218-2237 | Msa1338430:CDS | 20.0% |
| !! | TGTCTATAAGATATATAAGT+GGG | - | tig0002112:2219-2238 | Msa1338430:CDS | 20.0% |
| !!! | TGAATGTTTATATTGATTGA+AGG | - | tig0002112:2808-2827 | Msa1338430:CDS | 20.0% |
| !!! | AATTTAATGTTCTGGTTTAT+GGG | - | tig0002112:2836-2855 | Msa1338430:CDS | 20.0% |
| !! | TTTAGATGAGTTAACTAATT+TGG | - | tig0002112:3388-3407 | Msa1338430:CDS | 20.0% |
| !!! | ATGATGAAAAACTGTTTTAA+TGG | - | tig0002112:3458-3477 | Msa1338430:intron | 20.0% |
| !!! | TGTTTTTTATGTCATAAGTT+AGG | - | tig0002112:4649-4668 | Msa1338430:CDS | 20.0% |
| ! | TGAAAATTCAGTTATTGATG+CGG | - | tig0002112:1844-1863 | Msa1338430:three_prime_UTR | 25.0% |
| ! | CATTTAGTGATAAAGAATCA+TGG | - | tig0002112:1885-1904 | Msa1338430:three_prime_UTR | 25.0% |
| !!! | CTTATTTTGTGAATTGTTCT+TGG | + | tig0002112:2005-2024 | None:intergenic | 25.0% |
| ! | ACAAAATAAGAAATCGGATA+AGG | - | tig0002112:2015-2034 | Msa1338430:CDS | 25.0% |
| !!! | GCTTTAATAAATTCTAAAGC+TGG | - | tig0002112:2331-2350 | Msa1338430:CDS | 25.0% |
| ! | ACCGAACAAACAATAAATAT+CGG | - | tig0002112:2653-2672 | Msa1338430:CDS | 25.0% |
| ! | AGTACAAAATACTAACCTAA+TGG | + | tig0002112:2679-2698 | None:intergenic | 25.0% |
| ! | TGAAATTTGAATGAATGTTC+TGG | - | tig0002112:2726-2745 | Msa1338430:CDS | 25.0% |
| !!! | ATGTTCTGGTTTAAAATTGA+AGG | - | tig0002112:2740-2759 | Msa1338430:CDS | 25.0% |
| !! | AGGTTTAGAATTTAATGTTC+TGG | - | tig0002112:2828-2847 | Msa1338430:CDS | 25.0% |
| !!! | GAATTTAATGTTCTGGTTTA+TGG | - | tig0002112:2835-2854 | Msa1338430:CDS | 25.0% |
| !! | TGTTGTATTTTGTTCTGATT+TGG | - | tig0002112:3084-3103 | Msa1338430:CDS | 25.0% |
| ! | AAAACACCTTGAAAAACATT+CGG | + | tig0002112:3296-3315 | None:intergenic | 25.0% |
| !!! | TGAAAAACTGTTTTAATGGA+AGG | - | tig0002112:3462-3481 | Msa1338430:intron | 25.0% |
| ! | CTTTAGTCATTTCAACATTA+TGG | - | tig0002112:3655-3674 | Msa1338430:intron | 25.0% |
| ! | TGAATAAATGAAAAGCAAGA+TGG | + | tig0002112:3794-3813 | None:intergenic | 25.0% |
| ! | CATAATAGTATTTGAAGGAA+AGG | + | tig0002112:3829-3848 | None:intergenic | 25.0% |
| ! | TTCCTTCAAATACTATTATG+AGG | - | tig0002112:3829-3848 | Msa1338430:intron | 25.0% |
| !!! | ATGTTGATAATGATAATGAG+AGG | - | tig0002112:3930-3949 | Msa1338430:CDS | 25.0% |
| !!! | TGTTGATAATGATAATGAGA+GGG | - | tig0002112:3931-3950 | Msa1338430:CDS | 25.0% |
| !!! | GATGAGTTTCTTATTTCTAA+AGG | - | tig0002112:4394-4413 | Msa1338430:CDS | 25.0% |
| ! | TGATGCTTTAACTAAAAAAG+CGG | - | tig0002112:4680-4699 | Msa1338430:CDS | 25.0% |
| ! | AATTCTTGATTGTTATGCAT+TGG | - | tig0002112:4747-4766 | Msa1338430:five_prime_UTR | 25.0% |
| ATATTAACTTCATCTGAGAG+TGG | - | tig0002112:1809-1828 | Msa1338430:three_prime_UTR | 30.0% | |
| TAAAGAATCATGGAAGTCTT+TGG | - | tig0002112:1895-1914 | Msa1338430:exon | 30.0% | |
| CGTTATGTTTGTAACAAAGA+AGG | - | tig0002112:2049-2068 | Msa1338430:CDS | 30.0% | |
| TAACAAAGAAGGTTTCAAGA+AGG | - | tig0002112:2060-2079 | Msa1338430:CDS | 30.0% | |
| AACAAAGAAGGTTTCAAGAA+GGG | - | tig0002112:2061-2080 | Msa1338430:CDS | 30.0% | |
| TAAAGAAAAACCAGAGGAAA+GGG | - | tig0002112:2150-2169 | Msa1338430:CDS | 30.0% | |
| ! | AGCTGGAATATATTTGAAGT+TGG | - | tig0002112:2183-2202 | Msa1338430:CDS | 30.0% |
| ! | AAATGCTCTGGTTTATGTAA+TGG | + | tig0002112:2262-2281 | None:intergenic | 30.0% |
| AGAACATCTTATGAAGTGAT+GGG | - | tig0002112:2364-2383 | Msa1338430:CDS | 30.0% | |
| ! | GAATCTTCCTTTTCGATTTT+CGG | - | tig0002112:2408-2427 | Msa1338430:CDS | 30.0% |
| TTTAAGTCCGAAAATCGAAA+AGG | + | tig0002112:2418-2437 | None:intergenic | 30.0% | |
| TGGATATCATAGTAAAAACC+TGG | + | tig0002112:2532-2551 | None:intergenic | 30.0% | |
| !!! | AAGACATAGCCAGTATTTTT+TGG | - | tig0002112:2566-2585 | Msa1338430:CDS | 30.0% |
| !!! | AGACATAGCCAGTATTTTTT+GGG | - | tig0002112:2567-2586 | Msa1338430:CDS | 30.0% |
| CAACAAGATTATGCTCTATT+TGG | - | tig0002112:2604-2623 | Msa1338430:CDS | 30.0% | |
| GCCGATATTTATTGTTTGTT+CGG | + | tig0002112:2657-2676 | None:intergenic | 30.0% | |
| AACAATAAATATCGGCCATT+AGG | - | tig0002112:2661-2680 | Msa1338430:CDS | 30.0% | |
| ! | TGGTTTAAAATTGAAGGTTC+TGG | - | tig0002112:2746-2765 | Msa1338430:CDS | 30.0% |
| CTGGTATATGTGTGTTAATT+TGG | - | tig0002112:2765-2784 | Msa1338430:CDS | 30.0% | |
| AAACACATATGATCTTTCCA+TGG | + | tig0002112:2899-2918 | None:intergenic | 30.0% | |
| TTTCTATTTACACAGCACAA+TGG | - | tig0002112:3043-3062 | Msa1338430:CDS | 30.0% | |
| ATGATTGTCAAAACCAAGAA+AGG | + | tig0002112:3123-3142 | None:intergenic | 30.0% | |
| ! | TATGGTTTGAGGTTTCTTAT+TGG | + | tig0002112:3237-3256 | None:intergenic | 30.0% |
| ! | TCAATTCCGAATGTTTTTCA+AGG | - | tig0002112:3287-3306 | Msa1338430:CDS | 30.0% |
| ! | TTTTTCATGTTCTTTGCTCA+TGG | - | tig0002112:3312-3331 | Msa1338430:CDS | 30.0% |
| GAGAATGCAAAGAAAAATCT+CGG | - | tig0002112:3344-3363 | Msa1338430:CDS | 30.0% | |
| AATCAGATTTCGACTACAAT+TGG | - | tig0002112:3429-3448 | Msa1338430:intron | 30.0% | |
| ATCAGATTTCGACTACAATT+GGG | - | tig0002112:3430-3449 | Msa1338430:intron | 30.0% | |
| TAAAGAATCGAACAAGTGAA+TGG | + | tig0002112:3640-3659 | None:intergenic | 30.0% | |
| TGGTGTATACTTGTTTACTA+CGG | + | tig0002112:3774-3793 | None:intergenic | 30.0% | |
| CTCCTCATAATAGTATTTGA+AGG | + | tig0002112:3834-3853 | None:intergenic | 30.0% | |
| CTTCAAATACTATTATGAGG+AGG | - | tig0002112:3832-3851 | Msa1338430:intron | 30.0% | |
| ! | CAAAGTTTTCACAATTGAGA+AGG | - | tig0002112:3889-3908 | Msa1338430:CDS | 30.0% |
| ATTATGATCTTCAAACCTTG+GGG | + | tig0002112:4002-4021 | None:intergenic | 30.0% | |
| GATTATGATCTTCAAACCTT+GGG | + | tig0002112:4003-4022 | None:intergenic | 30.0% | |
| !! | ATCATAATCGACTTGATGAA+AGG | - | tig0002112:4014-4033 | Msa1338430:CDS | 30.0% |
| !! | TCATAATCGACTTGATGAAA+GGG | - | tig0002112:4015-4034 | Msa1338430:CDS | 30.0% |
| !! | TCGACATGTTTTCAAGATTT+TGG | - | tig0002112:4111-4130 | Msa1338430:CDS | 30.0% |
| !! | ACATGTTTTCAAGATTTTGG+AGG | - | tig0002112:4114-4133 | Msa1338430:CDS | 30.0% |
| !!! | CTGCACAATATGTTTTAAAG+CGG | - | tig0002112:4179-4198 | Msa1338430:CDS | 30.0% |
| ! | GCATCTGAAATATTTCTCAA+CGG | - | tig0002112:4346-4365 | Msa1338430:CDS | 30.0% |
| ! | TTTGGTCTTTCTTTGAACTT+TGG | + | tig0002112:4502-4521 | None:intergenic | 30.0% |
| AAGAAAGACCAAATCCAATT+AGG | - | tig0002112:4509-4528 | Msa1338430:CDS | 30.0% | |
| TTCTTTGACCTAATTGGATT+TGG | + | tig0002112:4520-4539 | None:intergenic | 30.0% | |
| ! | TGAGGCTTTAACAAATTAAG+CGG | - | tig0002112:4618-4637 | Msa1338430:CDS | 30.0% |
| !!! | GTGTTTGTTGCTGTTTTCAA+TGG | - | tig0002112:1781-1800 | Msa1338430:three_prime_UTR | 35.0% |
| ATAACACTGGATTCTCTGTT+AGG | - | tig0002112:1966-1985 | Msa1338430:CDS | 35.0% | |
| GTCTGCTTAATCCTAAAAAC+AGG | - | tig0002112:2086-2105 | Msa1338430:CDS | 35.0% | |
| TTCTCATACTCAACAAGAAC+TGG | + | tig0002112:2127-2146 | None:intergenic | 35.0% | |
| GAAAGCTAAAGAAAAACCAG+AGG | - | tig0002112:2144-2163 | Msa1338430:CDS | 35.0% | |
| CTAAAGAAAAACCAGAGGAA+AGG | - | tig0002112:2149-2168 | Msa1338430:CDS | 35.0% | |
| CGAGAAGTAAATGAAGTTCA+AGG | - | tig0002112:2301-2320 | Msa1338430:CDS | 35.0% | |
| GAGAACATCTTATGAAGTGA+TGG | - | tig0002112:2363-2382 | Msa1338430:CDS | 35.0% | |
| TCTAATGACAACTCGTCAAA+AGG | - | tig0002112:2444-2463 | Msa1338430:CDS | 35.0% | |
| CATAAATTCCAAGGCAAGAT+AGG | + | tig0002112:2866-2885 | None:intergenic | 35.0% | |
| TGTACAGAGCATAAATTCCA+AGG | + | tig0002112:2875-2894 | None:intergenic | 35.0% | |
| ! | CATCGTAAGAGTGTGTTATT+TGG | - | tig0002112:3140-3159 | Msa1338430:CDS | 35.0% |
| !!! | AGACATCAGCTACTTTTGAT+TGG | - | tig0002112:3183-3202 | Msa1338430:CDS | 35.0% |
| ! | TTTTAATGGAAGGCCTACTT+CGG | - | tig0002112:3472-3491 | Msa1338430:intron | 35.0% |
| CTCATTCAAATCGTATGCAT+TGG | - | tig0002112:3516-3535 | Msa1338430:intron | 35.0% | |
| !! | TATGCATTGGTCTTCAGTTT+GGG | - | tig0002112:3529-3548 | Msa1338430:intron | 35.0% |
| ! | TCTTTCAATGCTTTTCTTCG+TGG | - | tig0002112:3599-3618 | Msa1338430:intron | 35.0% |
| ACATTATGGTTCAGAGAATG+AGG | - | tig0002112:3669-3688 | Msa1338430:intron | 35.0% | |
| CATTATGGTTCAGAGAATGA+GGG | - | tig0002112:3670-3689 | Msa1338430:intron | 35.0% | |
| ! | GGTTTCGAATGTTGATGTTT+TGG | - | tig0002112:3952-3971 | Msa1338430:CDS | 35.0% |
| CGATTATGATCTTCAAACCT+TGG | + | tig0002112:4004-4023 | None:intergenic | 35.0% | |
| !! | TTCAAGATTTTGGAGGTCTT+AGG | - | tig0002112:4121-4140 | Msa1338430:CDS | 35.0% |
| !! | CGCTTTAAAACATATTGTGC+AGG | + | tig0002112:4181-4200 | None:intergenic | 35.0% |
| !!! | CACAATATGTTTTAAAGCGG+TGG | - | tig0002112:4182-4201 | Msa1338430:CDS | 35.0% |
| !! | ACTGCTTTTGAAGACTTAGA+AGG | + | tig0002112:4448-4467 | None:intergenic | 35.0% |
| GACAGAAATTCCTTATAGCT+CGG | - | tig0002112:4575-4594 | Msa1338430:CDS | 35.0% | |
| GAAGCAAAAGAAAGATGATG+AGG | - | tig0002112:4600-4619 | Msa1338430:CDS | 35.0% | |
| ! | GAGGCTTTAACAAATTAAGC+GGG | - | tig0002112:4619-4638 | Msa1338430:CDS | 35.0% |
| ATCTGAGAGTGGACAATTGA+CGG | - | tig0002112:1820-1839 | Msa1338430:three_prime_UTR | 40.0% | |
| !! | TCACATGTTGGCCTGTTTTT+AGG | + | tig0002112:2100-2119 | None:intergenic | 40.0% |
| !! | TCTTATGAAGTGATGGGTCA+AGG | - | tig0002112:2370-2389 | Msa1338430:CDS | 40.0% |
| TCCATCTGCCCAAAAAATAC+TGG | + | tig0002112:2578-2597 | None:intergenic | 40.0% | |
| ATTTATGCTCTGTACAGCCA+TGG | - | tig0002112:2879-2898 | Msa1338430:CDS | 40.0% | |
| TCCAGCTATGCAAAGATCAT+AGG | - | tig0002112:2989-3008 | Msa1338430:CDS | 40.0% | |
| ACCTATGATCTTTGCATAGC+TGG | + | tig0002112:2993-3012 | None:intergenic | 40.0% | |
| TTCATTTCAGCTGCCTTTCT+TGG | - | tig0002112:3107-3126 | Msa1338430:CDS | 40.0% | |
| TGGTCTGTGTATATGGTTTG+AGG | + | tig0002112:3248-3267 | None:intergenic | 40.0% | |
| TCAAACCATATACACAGACC+AGG | - | tig0002112:3247-3266 | Msa1338430:CDS | 40.0% | |
| !! | GTATGCATTGGTCTTCAGTT+TGG | - | tig0002112:3528-3547 | Msa1338430:intron | 40.0% |
| AATCGAACAAGTGAATGGTC+TGG | + | tig0002112:3635-3654 | None:intergenic | 40.0% | |
| ! | TCATGCTGAGTTGGACTTTA+AGG | - | tig0002112:3697-3716 | Msa1338430:intron | 40.0% |
| TATGAGGAGGACACAACAAA+AGG | - | tig0002112:3845-3864 | Msa1338430:intron | 40.0% | |
| ATGAGGAGGACACAACAAAA+GGG | - | tig0002112:3846-3865 | Msa1338430:intron | 40.0% | |
| TTGAAGAAAACCTTTCCCCA+AGG | - | tig0002112:3984-4003 | Msa1338430:CDS | 40.0% | |
| CATGTCGTATGTTTGAGAAC+CGG | - | tig0002112:4077-4096 | Msa1338430:CDS | 40.0% | |
| ATGTCGTATGTTTGAGAACC+GGG | - | tig0002112:4078-4097 | Msa1338430:CDS | 40.0% | |
| !! | AAGATTTTGGAGGTCTTAGG+TGG | - | tig0002112:4124-4143 | Msa1338430:CDS | 40.0% |
| GATTTCAGCTTATCGACAGA+CGG | + | tig0002112:4223-4242 | None:intergenic | 40.0% | |
| CTGAAATCCACCATGAATGT+TGG | - | tig0002112:4235-4254 | Msa1338430:CDS | 40.0% | |
| TTTAGTGCCAACATTCATGG+TGG | + | tig0002112:4245-4264 | None:intergenic | 40.0% | |
| GTCTTTAGTGCCAACATTCA+TGG | + | tig0002112:4248-4267 | None:intergenic | 40.0% | |
| ATTTCTCAACGGTGTTCTTG+AGG | - | tig0002112:4357-4376 | Msa1338430:CDS | 40.0% | |
| ! | TGAAGACTTAGAAGGCGTAA+CGG | + | tig0002112:4440-4459 | None:intergenic | 40.0% |
| AGTCGCTTCTTTGACCTAAT+TGG | + | tig0002112:4526-4545 | None:intergenic | 40.0% | |
| TTTGCTTCTTCCGAGCTATA+AGG | + | tig0002112:4588-4607 | None:intergenic | 40.0% | |
| AGAACTGGACTGTCACATGT+TGG | + | tig0002112:2112-2131 | None:intergenic | 45.0% | |
| GAAAAACCAGAGGAAAGGGT+TGG | - | tig0002112:2154-2173 | Msa1338430:CDS | 45.0% | |
| TTACAACCAACCCTTTCCTC+TGG | + | tig0002112:2163-2182 | None:intergenic | 45.0% | |
| !! | GAAAGGGTTGGTTGTAAAGC+TGG | - | tig0002112:2166-2185 | Msa1338430:CDS | 45.0% |
| CTCAAGTAGCACAAATGCTC+TGG | + | tig0002112:2274-2293 | None:intergenic | 45.0% | |
| GACAACTCGTCAAAAGGAGA+TGG | - | tig0002112:2450-2469 | Msa1338430:CDS | 45.0% | |
| AACTCGTCAAAAGGAGATGG+TGG | - | tig0002112:2453-2472 | Msa1338430:CDS | 45.0% | |
| AATGAAGCTCTCTCGAAACC+AGG | - | tig0002112:2511-2530 | Msa1338430:CDS | 45.0% | |
| TGTCTTCTGCAGCATCAACT+TGG | + | tig0002112:2552-2571 | None:intergenic | 45.0% | |
| !!! | GCCAGTATTTTTTGGGCAGA+TGG | - | tig0002112:2574-2593 | Msa1338430:CDS | 45.0% |
| TGTTCTTTGCTCATGGCACA+TGG | - | tig0002112:3319-3338 | Msa1338430:CDS | 45.0% | |
| GTTCTTTGCTCATGGCACAT+GGG | - | tig0002112:3320-3339 | Msa1338430:CDS | 45.0% | |
| AGCCACTTAAAGTCCGAAGT+AGG | + | tig0002112:3488-3507 | None:intergenic | 45.0% | |
| !! | ATTGGTCTTCAGTTTGGGTG+AGG | - | tig0002112:3534-3553 | Msa1338430:intron | 45.0% |
| ! | GTGAGGTCACATTTTACAGC+TGG | - | tig0002112:3551-3570 | Msa1338430:intron | 45.0% |
| GAGGGATAATCATGCTGAGT+TGG | - | tig0002112:3688-3707 | Msa1338430:intron | 45.0% | |
| ATCCCAACAGTCAGCTTATG+CGG | - | tig0002112:3747-3766 | Msa1338430:intron | 45.0% | |
| GATCTTCAAACCTTGGGGAA+AGG | + | tig0002112:3997-4016 | None:intergenic | 45.0% | |
| TGTCGTATGTTTGAGAACCG+GGG | - | tig0002112:4079-4098 | Msa1338430:CDS | 45.0% | |
| CATGTCGACATAAGAAACCC+CGG | + | tig0002112:4099-4118 | None:intergenic | 45.0% | |
| TTGATATCGTTGCGCTTCAG+TGG | + | tig0002112:4272-4291 | None:intergenic | 45.0% | |
| TGTTCTTGAGGCAGGGAAAA+AGG | - | tig0002112:4369-4388 | Msa1338430:CDS | 45.0% | |
| CTGTCTGTGAACCATCTGTT+GGG | - | tig0002112:4470-4489 | Msa1338430:CDS | 45.0% | |
| !! | GAAGTGATGGGTCAAGGAGT+TGG | - | tig0002112:2376-2395 | Msa1338430:CDS | 50.0% |
| TGGGTGATCCTATCTTGCCT+TGG | - | tig0002112:2855-2874 | Msa1338430:CDS | 50.0% | |
| ACCATATACACAGACCAGGC+TGG | - | tig0002112:3251-3270 | Msa1338430:CDS | 50.0% | |
| ACCAGCCTGGTCTGTGTATA+TGG | + | tig0002112:3255-3274 | None:intergenic | 50.0% | |
| GGCCTACTTCGGACTTTAAG+TGG | - | tig0002112:3483-3502 | Msa1338430:intron | 50.0% | |
| GACCGCATAAGCTGACTGTT+GGG | + | tig0002112:3752-3771 | None:intergenic | 50.0% | |
| AGGGTTGTCACAGTCGACAT+TGG | - | tig0002112:4034-4053 | Msa1338430:CDS | 50.0% | |
| GGGTTGTCACAGTCGACATT+GGG | - | tig0002112:4035-4054 | Msa1338430:CDS | 50.0% | |
| TACACGTGTTTGCGCAGATG+CGG | - | tig0002112:4321-4340 | Msa1338430:CDS | 50.0% | |
| TCAACGGTGTTCTTGAGGCA+GGG | - | tig0002112:4362-4381 | Msa1338430:CDS | 50.0% | |
| GCTGTCTGTGAACCATCTGT+TGG | - | tig0002112:4469-4488 | Msa1338430:CDS | 50.0% | |
| ! | TTTGGTGCAGTCCCAACAGA+TGG | + | tig0002112:4484-4503 | None:intergenic | 50.0% |
| !! | GTGATGGGTCAAGGAGTTGG+AGG | - | tig0002112:2379-2398 | Msa1338430:CDS | 55.0% |
| ! | CGTCAAAAGGAGATGGTGGC+TGG | - | tig0002112:2457-2476 | Msa1338430:CDS | 55.0% |
| ACTTCAACAACGCACCAGCC+TGG | + | tig0002112:3268-3287 | None:intergenic | 55.0% | |
| GGACCGCATAAGCTGACTGT+TGG | + | tig0002112:3753-3772 | None:intergenic | 55.0% | |
| CTCAACGGTGTTCTTGAGGC+AGG | - | tig0002112:4361-4380 | Msa1338430:CDS | 55.0% | |
| GGGTCAAGGAGTTGGAGGCA+CGG | - | tig0002112:2384-2403 | Msa1338430:CDS | 60.0% | |
| ACGTGTTTGCGCAGATGCGG+AGG | - | tig0002112:4324-4343 | Msa1338430:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0002112 | gene | 1755 | 4788 | 1755 | ID=Msa1338430;Name=Msa1338430 |
| tig0002112 | mRNA | 1755 | 4788 | 1755 | ID=Msa1338430-mRNA-1;Parent=Msa1338430;Name=Msa1338430-mRNA-1;_AED=0.00;_eAED=0.00;_QI=45|1|1|1|1|1|2|152|800 |
| tig0002112 | exon | 1755 | 3426 | 1755 | ID=Msa1338430-mRNA-1:exon:1655;Parent=Msa1338430-mRNA-1 |
| tig0002112 | exon | 3861 | 4788 | 3861 | ID=Msa1338430-mRNA-1:exon:1654;Parent=Msa1338430-mRNA-1 |
| tig0002112 | five_prime_UTR | 4744 | 4788 | 4744 | ID=Msa1338430-mRNA-1:five_prime_utr;Parent=Msa1338430-mRNA-1 |
| tig0002112 | CDS | 3861 | 4743 | 3861 | ID=Msa1338430-mRNA-1:cds;Parent=Msa1338430-mRNA-1 |
| tig0002112 | CDS | 1907 | 3426 | 1907 | ID=Msa1338430-mRNA-1:cds;Parent=Msa1338430-mRNA-1 |
| tig0002112 | three_prime_UTR | 1755 | 1906 | 1755 | ID=Msa1338430-mRNA-1:three_prime_utr;Parent=Msa1338430-mRNA-1 |
| Gene Sequence |
| Protein sequence |
