AlfalfaGEDB | Msa1341000

M. sativa cultivar zhongmu-4 / Msa1341000

KEGG: K07560|K11644
GO: GO:0000003 GO:0001708 GO:0002119 GO:0002164 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0007275 GO:0007423 GO:0007548 GO:0008150 GO:0009653 GO:0009791 GO:0009887 GO:0009987 GO:0022414 GO:0030154 GO:0030539 GO:0032501 GO:0032502 GO:0035112 GO:0040011 GO:0040025 GO:0045165 GO:0046661 GO:0048513 GO:0048569 GO:0048608 GO:0048731 GO:0048806 GO:0048808 GO:0048856 GO:0048869 GO:0061458 GO:0090596 GO:0090597 GO:0090598
PFAM: PF02671.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1341000	AES62696.1	50.495	101	50	0	3	103	2	102	1.03e-24	102

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1341000	sp\|Q9SRH9\|SNL1_ARATH	36.782	87	55	0	13	99	53	139	6.75e-12	65.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1341000	G7IE26	50.495	101	50	0	3	103	2	102	4.91e-25	102

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TFs/TRs:

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Gene ID	Type	Classification
Msa1341000	TR	Others

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1341000	MtrunA17_Chr1g0205861	50.495	101	50	0	3	103	2	102	9.46e-29	102
Msa1341000	MtrunA17_Chr7g0256011	52.809	89	41	1	1	89	1	88	6.41e-22	85.1
Msa1341000	MtrunA17_Chr1g0206771	48.611	72	37	0	11	82	10	81	3.59e-16	72.0
Msa1341000	MtrunA17_Chr1g0206771	46.269	67	36	0	15	81	93	159	1.10e-12	62.8
Msa1341000	MtrunA17_Chr3g0077891	44.578	83	45	1	11	92	93	175	1.44e-15	70.1
Msa1341000	MtrunA17_Chr5g0415031	41.558	77	45	0	9	85	35	111	1.56e-14	70.1
Msa1341000	MtrunA17_Chr3g0077941	45.122	82	44	1	12	92	93	174	3.17e-14	66.6
Msa1341000	MtrunA17_Chr8g0364231	42.308	78	44	1	8	85	34	110	1.10e-13	67.8
Msa1341000	MtrunA17_Chr1g0206781	39.080	87	52	1	8	93	2	88	2.10e-13	63.2
Msa1341000	MtrunA17_Chr4g0075971	40.187	107	60	2	16	121	88	191	4.44e-13	65.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1341000	AT3G01320.2	36.782	87	55	0	13	99	53	139	6.41e-13	65.9
Msa1341000	AT3G01320.1	36.782	87	55	0	13	99	53	139	6.86e-13	65.9
Msa1341000	AT1G70060.2	38.889	90	54	1	5	94	3	91	2.17e-12	64.3
Msa1341000	AT1G70060.1	38.889	90	54	1	5	94	3	91	2.17e-12	64.3
Msa1341000	AT1G24190.3	39.474	76	45	1	5	80	3	77	7.33e-12	62.8
Msa1341000	AT1G24190.2	39.474	76	45	1	5	80	3	77	7.84e-12	62.8
Msa1341000	AT1G24190.1	39.474	76	45	1	5	80	3	77	7.92e-12	62.8
Msa1341000	AT5G15040.1	42.188	64	37	0	15	78	1	64	2.00e-11	57.4
Msa1341000	AT5G15040.3	42.188	64	37	0	15	78	1	64	2.00e-11	57.4
Msa1341000	AT5G15040.2	42.188	64	37	0	15	78	1	64	2.00e-11	57.4

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Find 15 sgRNAs with CRISPR-Local

Find 18 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGGAGGAGTTGTTCGA+TGG	0.597043	tig0004660:-15815	Msa1341000:CDS
AAGCAAAACAGCACATCAAA+CGG	0.452640	tig0004660:-15712	Msa1341000:CDS
AAGGATTACAGTGGTGATGC+TGG	0.561781	tig0004660:-15986	Msa1341000:CDS
ACGGGATCGATTCAAGTTGG+AGG	0.593315	tig0004660:-15693	Msa1341000:CDS
AGCAAAACAGCACATCAAAC+GGG	0.507498	tig0004660:-15711	Msa1341000:CDS
AGTTGTGTTTCAAGATAAGA+TGG	0.435039	tig0004660:-15912	Msa1341000:CDS
ATTGCCAAACTCGATCAAAT+AGG	0.324623	tig0004660:-15614	Msa1341000:CDS
CAAACGGGATCGATTCAAGT+TGG	0.545140	tig0004660:-15696	Msa1341000:CDS
CGACTGATGAAGGATTACAG+TGG	0.795711	tig0004660:-15995	None:intergenic
GCAGAGAACATGAAGAAGCG+AGG	0.677188	tig0004660:-15551	Msa1341000:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGTTGTGTTTCAAGATAAGA+TGG	-	tig0004660:15603-15622	Msa1341000:CDS	30.0%
TAGAGATCTCTTTAGCATTA+AGG	+	tig0004660:15755-15774	None:intergenic	30.0%
TCAGAAACTACTAAGCATGA+AGG	-	tig0004660:15552-15571	Msa1341000:CDS	35.0%
AAGCAAAACAGCACATCAAA+CGG	-	tig0004660:15803-15822	Msa1341000:CDS	35.0%
ATTGCCAAACTCGATCAAAT+AGG	-	tig0004660:15901-15920	Msa1341000:CDS	35.0%
TTGCCAAACTCGATCAAATA+GGG	-	tig0004660:15902-15921	Msa1341000:CDS	35.0%
AAAATGGAGGAGTTGTTCGA+TGG	-	tig0004660:15700-15719	Msa1341000:CDS	40.0%
AGCAAAACAGCACATCAAAC+GGG	-	tig0004660:15804-15823	Msa1341000:CDS	40.0%
TGACCCTATTTGATCGAGTT+TGG	+	tig0004660:15908-15927	None:intergenic	40.0%
AAGTGCCACAGCAAAAATGG+AGG	-	tig0004660:15687-15706	Msa1341000:CDS	45.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0004660	gene	15526	16011	15526	ID=Msa1341000;Name=Msa1341000
tig0004660	mRNA	15526	16011	15526	ID=Msa1341000-mRNA-1;Parent=Msa1341000;Name=Msa1341000-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|161
tig0004660	exon	15526	16011	15526	ID=Msa1341000-mRNA-1:exon:2948;Parent=Msa1341000-mRNA-1
tig0004660	CDS	15526	16011	15526	ID=Msa1341000-mRNA-1:cds;Parent=Msa1341000-mRNA-1

Gene Sequence

>Msa1341000

ATGAAGGATTACAGTGGTGATGCTGGTCAGAAACTACTAAGCATGAAGGAAGCATCAGCGTTTGTAAATGATGTAAAAGTTGTGTTTCAAGATAAGATGGAAAAGTATGATGAGTTTGTGAAAGTTTTGTATGATTTCAAGGCTATGAGAATTGATCAAGAAAGTGCCACAGCAAAAATGGAGGAGTTGTTCGATGGACATTCAGATTTGATTATGAAATTAAACTCCTTAATGCTAAAGAGATCTCTAATGACTAACAATGATCATAATGACACTGAAGCAAAACAGCACATCAAACGGGATCGATTCAAGTTGGAGGTAATTGACCAATTTAATCAAATGCTTGACAAACTAGAGAAATTTGAGTTGAAAGTGATTGCCAAACTCGATCAAATAGGGTCAAGTGCTCAACATTCAACTAAAGCAATATTAGACATTGCAGAGAACATGAAGAAGCGAGGCGTGACAAACGTGAGTCAAAAGTGA

Protein sequence

>Msa1341000

MKDYSGDAGQKLLSMKEASAFVNDVKVVFQDKMEKYDEFVKVLYDFKAMRIDQESATAKMEELFDGHSDLIMKLNSLMLKRSLMTNNDHNDTEAKQHIKRDRFKLEVIDQFNQMLDKLEKFELKVIAKLDQIGSSAQHSTKAILDIAENMKKRGVTNVSQK*