Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1341620 | KEH24689.1 | 76.844 | 488 | 43 | 9 | 1 | 445 | 1 | 461 | 0.0 | 670 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1341620 | sp|A2X1N2|ORR24_ORYSI | 48.649 | 333 | 137 | 9 | 3 | 306 | 23 | 350 | 1.98e-88 | 284 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1341620 | A0A072U4L8 | 76.844 | 488 | 43 | 9 | 1 | 445 | 1 | 461 | 0.0 | 670 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1341620 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1341620 | MtrunA17_Chr1g0149851 | 58.902 | 528 | 119 | 14 | 1 | 431 | 1 | 527 | 0.0 | 516 |
| Msa1341620 | MtrunA17_Chr7g0275891 | 77.054 | 353 | 32 | 6 | 1 | 316 | 1 | 341 | 9.29e-168 | 475 |
| Msa1341620 | MtrunA17_Chr1g0149841 | 57.700 | 487 | 111 | 11 | 1 | 393 | 1 | 486 | 1.01e-156 | 452 |
| Msa1341620 | MtrunA17_Chr7g0275401 | 65.836 | 281 | 70 | 5 | 1 | 255 | 1 | 281 | 2.23e-112 | 332 |
| Msa1341620 | MtrunA17_Chr3g0137101 | 57.367 | 319 | 107 | 6 | 3 | 299 | 6 | 317 | 8.21e-104 | 322 |
| Msa1341620 | MtrunA17_Chr1g0149831 | 75.648 | 193 | 29 | 3 | 61 | 238 | 1 | 190 | 4.50e-83 | 255 |
| Msa1341620 | MtrunA17_Chr2g0304841 | 43.734 | 391 | 161 | 13 | 3 | 347 | 16 | 393 | 2.38e-77 | 254 |
| Msa1341620 | MtrunA17_Chr2g0294911 | 46.367 | 289 | 128 | 5 | 1 | 265 | 25 | 310 | 1.05e-69 | 232 |
| Msa1341620 | MtrunA17_Chr4g0074411 | 43.068 | 339 | 166 | 7 | 5 | 326 | 18 | 346 | 5.22e-69 | 230 |
| Msa1341620 | MtrunA17_Chr4g0067981 | 50.000 | 260 | 106 | 4 | 2 | 241 | 28 | 283 | 1.23e-67 | 228 |
| Msa1341620 | MtrunA17_Chr4g0074401 | 40.166 | 361 | 167 | 10 | 3 | 331 | 15 | 358 | 3.37e-66 | 222 |
| Msa1341620 | MtrunA17_Chr1g0161431 | 44.928 | 276 | 114 | 7 | 4 | 248 | 10 | 278 | 3.53e-64 | 218 |
| Msa1341620 | MtrunA17_Chr3g0123131 | 46.642 | 268 | 115 | 5 | 5 | 249 | 13 | 275 | 4.93e-64 | 216 |
| Msa1341620 | MtrunA17_Chr8g0376881 | 46.377 | 276 | 106 | 7 | 3 | 249 | 23 | 285 | 1.23e-61 | 209 |
| Msa1341620 | MtrunA17_Chr4g0074421 | 50.549 | 182 | 86 | 2 | 52 | 233 | 2 | 179 | 2.87e-51 | 171 |
| Msa1341620 | MtrunA17_Chr7g0275881 | 86.598 | 97 | 11 | 2 | 341 | 435 | 2 | 98 | 3.43e-50 | 166 |
| Msa1341620 | MtrunA17_Chr3g0134461 | 46.186 | 236 | 72 | 3 | 2 | 233 | 5 | 189 | 1.96e-49 | 167 |
| Msa1341620 | MtrunA17_Chr3g0134481 | 62.791 | 129 | 45 | 1 | 2 | 127 | 5 | 133 | 3.52e-44 | 152 |
| Msa1341620 | MtrunA17_Chr4g0009851 | 33.745 | 243 | 117 | 6 | 5 | 230 | 11 | 226 | 1.29e-35 | 134 |
| Msa1341620 | MtrunA17_Chr4g0009901 | 34.286 | 245 | 117 | 6 | 2 | 229 | 7 | 224 | 2.71e-35 | 132 |
| Msa1341620 | MtrunA17_Chr4g0009981 | 33.195 | 241 | 117 | 7 | 47 | 271 | 2 | 214 | 1.93e-28 | 112 |
| Msa1341620 | MtrunA17_Chr6g0471041 | 32.906 | 234 | 125 | 6 | 4 | 233 | 13 | 218 | 6.85e-28 | 114 |
| Msa1341620 | MtrunA17_Chr8g0391911 | 28.634 | 227 | 144 | 6 | 5 | 221 | 9 | 227 | 1.25e-20 | 90.9 |
| Msa1341620 | MtrunA17_Chr4g0011071 | 30.303 | 165 | 89 | 3 | 49 | 213 | 36 | 174 | 5.56e-20 | 87.0 |
| Msa1341620 | MtrunA17_Chr8g0350761 | 28.452 | 239 | 143 | 8 | 8 | 222 | 20 | 254 | 7.77e-19 | 88.6 |
| Msa1341620 | MtrunA17_Chr6g0456631 | 33.858 | 127 | 78 | 3 | 3 | 124 | 7 | 132 | 3.80e-18 | 81.6 |
| Msa1341620 | MtrunA17_Chr8g0383961 | 33.871 | 124 | 79 | 1 | 4 | 124 | 13 | 136 | 3.02e-16 | 78.6 |
| Msa1341620 | MtrunA17_Chr3g0091641 | 29.518 | 166 | 107 | 3 | 9 | 168 | 24 | 185 | 5.15e-16 | 80.5 |
| Msa1341620 | MtrunA17_Chr4g0009991 | 34.884 | 129 | 57 | 4 | 94 | 222 | 1 | 102 | 1.57e-15 | 72.8 |
| Msa1341620 | MtrunA17_Chr6g0473731 | 27.957 | 186 | 93 | 6 | 82 | 248 | 10 | 173 | 2.21e-15 | 77.8 |
| Msa1341620 | MtrunA17_Chr8g0345901 | 30.952 | 168 | 99 | 4 | 11 | 161 | 38 | 205 | 2.74e-15 | 78.2 |
| Msa1341620 | MtrunA17_Chr3g0127941 | 30.935 | 139 | 88 | 3 | 9 | 140 | 56 | 193 | 3.34e-15 | 78.2 |
| Msa1341620 | MtrunA17_Chr7g0276361 | 30.000 | 190 | 104 | 6 | 2 | 179 | 5 | 177 | 8.50e-15 | 76.6 |
| Msa1341620 | MtrunA17_Chr4g0061021 | 27.711 | 166 | 110 | 3 | 9 | 168 | 33 | 194 | 2.49e-14 | 75.1 |
| Msa1341620 | MtrunA17_Chr4g0031961 | 37.168 | 113 | 54 | 3 | 161 | 257 | 103 | 214 | 1.31e-12 | 68.6 |
| Msa1341620 | MtrunA17_Chr1g0181811 | 31.967 | 122 | 77 | 3 | 9 | 124 | 85 | 206 | 1.71e-12 | 69.7 |
| Msa1341620 | MtrunA17_Chr4g0030271 | 32.787 | 122 | 76 | 2 | 9 | 124 | 89 | 210 | 3.75e-12 | 68.6 |
| Msa1341620 | MtrunA17_Chr7g0223971 | 25.926 | 216 | 91 | 6 | 85 | 248 | 2 | 200 | 2.32e-11 | 65.9 |
| Msa1341620 | MtrunA17_Chr5g0400241 | 34.400 | 125 | 73 | 4 | 5 | 124 | 14 | 134 | 7.01e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1341620 | AT2G25180.1 | 52.396 | 313 | 122 | 8 | 3 | 293 | 11 | 318 | 1.22e-84 | 271 |
| Msa1341620 | AT4G31920.1 | 47.110 | 346 | 132 | 9 | 3 | 316 | 11 | 337 | 3.56e-81 | 261 |
| Msa1341620 | AT3G16857.1 | 37.565 | 386 | 155 | 11 | 3 | 334 | 31 | 384 | 4.96e-66 | 224 |
| Msa1341620 | AT3G16857.2 | 37.565 | 386 | 155 | 11 | 3 | 334 | 31 | 384 | 1.01e-65 | 223 |
| Msa1341620 | AT5G58080.1 | 44.985 | 329 | 123 | 12 | 3 | 296 | 12 | 317 | 3.21e-64 | 218 |
| Msa1341620 | AT2G01760.1 | 42.955 | 291 | 135 | 7 | 1 | 266 | 3 | 287 | 1.12e-62 | 207 |
| Msa1341620 | AT2G01760.2 | 40.125 | 319 | 132 | 8 | 1 | 266 | 3 | 315 | 1.31e-58 | 198 |
| Msa1341620 | AT1G67710.1 | 46.850 | 254 | 108 | 6 | 6 | 236 | 8 | 257 | 5.85e-58 | 199 |
| Msa1341620 | AT3G16857.3 | 37.391 | 345 | 133 | 10 | 41 | 334 | 2 | 314 | 8.01e-57 | 198 |
| Msa1341620 | AT2G01760.3 | 40.789 | 228 | 107 | 6 | 61 | 266 | 1 | 222 | 7.30e-41 | 148 |
| Msa1341620 | AT1G67710.2 | 45.641 | 195 | 82 | 5 | 61 | 235 | 1 | 191 | 1.37e-39 | 148 |
| Msa1341620 | AT3G62670.1 | 35.217 | 230 | 127 | 8 | 10 | 232 | 42 | 256 | 5.18e-33 | 129 |
| Msa1341620 | AT5G49240.1 | 33.184 | 223 | 140 | 4 | 5 | 221 | 38 | 257 | 1.02e-32 | 125 |
| Msa1341620 | AT1G67710.3 | 39.429 | 175 | 82 | 5 | 81 | 235 | 12 | 182 | 1.05e-25 | 109 |
| Msa1341620 | AT1G49190.1 | 29.020 | 255 | 131 | 7 | 4 | 232 | 29 | 259 | 1.70e-25 | 108 |
| Msa1341620 | AT1G49190.2 | 28.934 | 197 | 115 | 4 | 4 | 197 | 29 | 203 | 5.35e-19 | 90.1 |
| Msa1341620 | AT2G46790.1 | 35.772 | 123 | 71 | 3 | 9 | 124 | 37 | 158 | 2.31e-16 | 81.6 |
| Msa1341620 | AT2G46790.3 | 35.772 | 123 | 71 | 3 | 9 | 124 | 37 | 158 | 2.63e-16 | 81.3 |
| Msa1341620 | AT5G07210.2 | 24.088 | 274 | 154 | 9 | 7 | 232 | 14 | 281 | 2.56e-15 | 78.6 |
| Msa1341620 | AT5G61380.1 | 28.916 | 166 | 108 | 3 | 9 | 168 | 19 | 180 | 5.06e-15 | 77.8 |
| Msa1341620 | AT5G07210.1 | 24.113 | 282 | 152 | 10 | 7 | 232 | 14 | 289 | 1.20e-14 | 76.6 |
| Msa1341620 | AT5G24470.1 | 32.812 | 128 | 78 | 3 | 7 | 127 | 48 | 174 | 4.08e-14 | 74.7 |
| Msa1341620 | AT5G60100.7 | 33.858 | 127 | 77 | 3 | 5 | 124 | 59 | 185 | 5.83e-13 | 70.9 |
| Msa1341620 | AT5G60100.6 | 33.858 | 127 | 77 | 3 | 5 | 124 | 59 | 185 | 5.83e-13 | 70.9 |
| Msa1341620 | AT5G60100.4 | 33.858 | 127 | 77 | 3 | 5 | 124 | 59 | 185 | 5.83e-13 | 70.9 |
| Msa1341620 | AT5G60100.5 | 33.858 | 127 | 77 | 3 | 5 | 124 | 59 | 185 | 6.55e-13 | 70.9 |
| Msa1341620 | AT5G60100.3 | 33.858 | 127 | 77 | 3 | 5 | 124 | 59 | 185 | 6.55e-13 | 70.9 |
| Msa1341620 | AT5G60100.1 | 33.858 | 127 | 77 | 3 | 5 | 124 | 59 | 185 | 6.55e-13 | 70.9 |
| Msa1341620 | AT5G60100.2 | 33.858 | 127 | 77 | 3 | 5 | 124 | 59 | 185 | 9.70e-13 | 70.5 |
| Msa1341620 | AT5G02810.1 | 31.967 | 122 | 77 | 2 | 9 | 124 | 78 | 199 | 1.71e-12 | 70.1 |
| Msa1341620 | AT3G46640.3 | 31.333 | 150 | 84 | 4 | 174 | 307 | 129 | 275 | 2.38e-12 | 68.2 |
| Msa1341620 | AT3G46640.2 | 31.333 | 150 | 84 | 4 | 174 | 307 | 129 | 275 | 4.19e-12 | 67.4 |
| Msa1341620 | AT3G46640.1 | 31.333 | 150 | 84 | 4 | 174 | 307 | 129 | 275 | 4.19e-12 | 67.4 |
| Msa1341620 | AT5G59570.2 | 37.755 | 98 | 45 | 2 | 167 | 248 | 121 | 218 | 2.45e-11 | 64.7 |
| Msa1341620 | AT5G59570.1 | 37.755 | 98 | 45 | 2 | 167 | 248 | 121 | 218 | 2.45e-11 | 64.7 |
Find 85 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGCTCTTTACATGGAAAA+AGG | 0.209902 | tig0004829:-173147 | Msa1341620:CDS |
| GGAAGGTAAGAATTTGTTTC+AGG | 0.212805 | tig0004829:+173091 | None:intergenic |
| CTTGCTGTTGTTAATCAATT+AGG | 0.232624 | tig0004829:-174153 | Msa1341620:CDS |
| TACCAATCACATGATTATTA+TGG | 0.258074 | tig0004829:+173011 | None:intergenic |
| TGATTTGGCAACATGTAATT+AGG | 0.275585 | tig0004829:-174407 | Msa1341620:CDS |
| CCATTTCCACTATCAAAATT+AGG | 0.281786 | tig0004829:+174348 | None:intergenic |
| TTGAGCAAAACTCTTCTTGA+TGG | 0.285117 | tig0004829:+171825 | None:intergenic |
| TATCTGAAAGGAATTAGTTC+TGG | 0.286831 | tig0004829:-173439 | Msa1341620:CDS |
| ATGAATGATCAGTTTCCTAT+TGG | 0.311031 | tig0004829:-175628 | Msa1341620:CDS |
| ATGAAAAGCCAACTAGAAAA+AGG | 0.314880 | tig0004829:-174290 | Msa1341620:CDS |
| GCCTCATGTGGTTTCTTTGA+AGG | 0.325335 | tig0004829:+172938 | None:intergenic |
| CATAAATTATATTACCTGTT+TGG | 0.347407 | tig0004829:+172829 | None:intergenic |
| TGAAAGAGGTACAGATGATT+TGG | 0.347739 | tig0004829:-174422 | Msa1341620:CDS |
| CATGTGATTGGTAGTTCAAT+AGG | 0.356360 | tig0004829:-173001 | Msa1341620:CDS |
| GGCATTCTTTGAACATGGTT+CGG | 0.368479 | tig0004829:+173205 | None:intergenic |
| TTTAATTGCATAGAAATTGT+TGG | 0.369454 | tig0004829:-174924 | Msa1341620:intron |
| GTTCGGATTGGCGTGAGCTT+TGG | 0.373257 | tig0004829:+173222 | None:intergenic |
| TTTAAGCTTCTTGAGCTTGT+TGG | 0.375182 | tig0004829:-174638 | Msa1341620:CDS |
| TGAGAGGCTACAGAAGAAAT+TGG | 0.392769 | tig0004829:+173184 | None:intergenic |
| AATGGGATGTATTTGCTTGT+TGG | 0.392821 | tig0004829:+173410 | None:intergenic |
| AACCATAATAATCATGTGAT+TGG | 0.416988 | tig0004829:-173013 | Msa1341620:CDS |
| ATTCCTTTCATCACCATCCT+TGG | 0.417097 | tig0004829:+174486 | None:intergenic |
| AGAAGAAGCCTCGAGTTGTT+TGG | 0.418038 | tig0004829:-174200 | Msa1341620:CDS |
| CGAGGCTTCTTCTGTGCTGT+TGG | 0.425164 | tig0004829:+174210 | None:intergenic |
| AATCAAAGTGACAACAAGAT+TGG | 0.426152 | tig0004829:-171970 | Msa1341620:exon |
| CTGATTGAGAAGACAAAACT+TGG | 0.430217 | tig0004829:+171859 | None:intergenic |
| ATCTGAAAGGAATTAGTTCT+GGG | 0.433081 | tig0004829:-173438 | Msa1341620:CDS |
| ACTAGCAATGTGCCATTTCA+AGG | 0.436943 | tig0004829:-173046 | Msa1341620:CDS |
| GCAAGAACACGCATTCCAAT+AGG | 0.445918 | tig0004829:+175613 | None:intergenic |
| TGAGAGAACTGAATCTTGAA+TGG | 0.446366 | tig0004829:+173392 | None:intergenic |
| TGTACCTCTTTCAATGTGAC+AGG | 0.446657 | tig0004829:+174432 | None:intergenic |
| AATGGTCTAAAAGCACTGTT+AGG | 0.452029 | tig0004829:+173316 | None:intergenic |
| TGAGCTTGTTGGACTTGAGA+TGG | 0.457732 | tig0004829:-174627 | Msa1341620:CDS |
| AAACTTGCGGTGTAAGTCAT+TGG | 0.458916 | tig0004829:+174176 | None:intergenic |
| TTCAGTTCTCTCACTAGAGT+TGG | 0.460910 | tig0004829:-173382 | Msa1341620:CDS |
| TCTCGTTCAACATTTACAAC+AGG | 0.467597 | tig0004829:+172965 | None:intergenic |
| AGCTTAAATCCATCCATGTC+TGG | 0.471845 | tig0004829:+174653 | None:intergenic |
| CAATATGCATGGATTTCAAC+CGG | 0.482097 | tig0004829:-173245 | Msa1341620:CDS |
| AGACCATTTCCATCTGGTGG+TGG | 0.485592 | tig0004829:-173301 | Msa1341620:CDS |
| GGATAAGAATGATGATATTG+AGG | 0.489929 | tig0004829:-174265 | Msa1341620:CDS |
| CCATGCATATTGACACTAGC+AGG | 0.493898 | tig0004829:+173256 | None:intergenic |
| TTGTTGGATTCATTAGATCC+AGG | 0.494057 | tig0004829:-174908 | Msa1341620:CDS |
| ATACCACCACCAGATGGAAA+TGG | 0.500539 | tig0004829:+173298 | None:intergenic |
| TGACTTTGATGACGTCTTCG+AGG | 0.509927 | tig0004829:+172855 | None:intergenic |
| TTTAGACCATTTCCATCTGG+TGG | 0.515382 | tig0004829:-173304 | Msa1341620:CDS |
| TCTTTGAACATGGTTCGGAT+TGG | 0.518790 | tig0004829:+173210 | None:intergenic |
| CATCAAAGTCATGACCAAAC+AGG | 0.521398 | tig0004829:-172843 | Msa1341620:intron |
| GGATTGGCGTGAGCTTTGGC+CGG | 0.526522 | tig0004829:+173226 | None:intergenic |
| CAATTATATGCTAATTACTC+TGG | 0.530133 | tig0004829:-171998 | Msa1341620:CDS |
| GACTTTGATGACGTCTTCGA+GGG | 0.537259 | tig0004829:+172856 | None:intergenic |
| TATGAACATTACTGATTACA+AGG | 0.547400 | tig0004829:+174678 | None:intergenic |
| TTGTAAATGTTGAACGAGAA+GGG | 0.549447 | tig0004829:-172961 | Msa1341620:CDS |
| GAAACCTGTCACATTGAAAG+AGG | 0.553386 | tig0004829:-174436 | Msa1341620:CDS |
| CCTGCTAGTGTCAATATGCA+TGG | 0.555451 | tig0004829:-173256 | Msa1341620:CDS |
| CTCATCATATATGCCTCATG+TGG | 0.556475 | tig0004829:+172926 | None:intergenic |
| GTTGTAAATGTTGAACGAGA+AGG | 0.564050 | tig0004829:-172962 | Msa1341620:CDS |
| GAGAGAACTGAATCTTGAAT+GGG | 0.567242 | tig0004829:+173393 | None:intergenic |
| GCAATGTGCCATTTCAAGGA+TGG | 0.575878 | tig0004829:-173042 | Msa1341620:CDS |
| TATATGCTAATTACTCTGGT+GGG | 0.582478 | tig0004829:-171994 | Msa1341620:CDS |
| TTATATGCTAATTACTCTGG+TGG | 0.583480 | tig0004829:-171995 | Msa1341620:CDS |
| GTTCATATGCCAGACATGGA+TGG | 0.584384 | tig0004829:-174662 | Msa1341620:CDS |
| AAATTGGCATTCTTTGAACA+TGG | 0.589855 | tig0004829:+173200 | None:intergenic |
| GGTTCGTGCACTTTGAGCAG+TGG | 0.595278 | tig0004829:+174739 | None:intergenic |
| AAATATAGACTCTATCTGAA+AGG | 0.596380 | tig0004829:-173451 | Msa1341620:CDS |
| TTGCATAACTCACTTATGAC+AGG | 0.597051 | tig0004829:+174599 | None:intergenic |
| AAATTCTTACCTTCCACAAG+GGG | 0.600441 | tig0004829:-173083 | Msa1341620:CDS |
| CTACTCATACCACCACCAGA+TGG | 0.600621 | tig0004829:+173292 | None:intergenic |
| TAAGAATGATGATATTGAGG+AGG | 0.601304 | tig0004829:-174262 | Msa1341620:CDS |
| GTGATGAAAGGAATTGATCA+TGG | 0.607173 | tig0004829:-174477 | Msa1341620:CDS |
| TGATGATAGAACTTGTCTCA+AGG | 0.612252 | tig0004829:-175584 | Msa1341620:intron |
| CAAATTCTTACCTTCCACAA+GGG | 0.612572 | tig0004829:-173084 | Msa1341620:CDS |
| TAATGTTCATATGCCAGACA+TGG | 0.614385 | tig0004829:-174666 | Msa1341620:CDS |
| AGAAAACAGTGGATGTTGAG+AGG | 0.619813 | tig0004829:+173168 | None:intergenic |
| TTTCTGCAAATGATGATCCA+AGG | 0.640841 | tig0004829:-174503 | Msa1341620:CDS |
| GATCCAAGGATGGTGATGAA+AGG | 0.644591 | tig0004829:-174489 | Msa1341620:CDS |
| ACAAATTCTTACCTTCCACA+AGG | 0.649192 | tig0004829:-173085 | Msa1341620:CDS |
| ATATATGATGAGCAACAAGA+TGG | 0.653513 | tig0004829:-172915 | Msa1341620:CDS |
| TGCAAATGATGATCCAAGGA+TGG | 0.655257 | tig0004829:-174499 | Msa1341620:CDS |
| ATAACTCACTTATGACAGGT+AGG | 0.663328 | tig0004829:+174603 | None:intergenic |
| TGTAAAGAGCAAGAAAACAG+TGG | 0.667428 | tig0004829:+173157 | None:intergenic |
| TCATTGGACCAAACAACTCG+AGG | 0.676972 | tig0004829:+174192 | None:intergenic |
| TTCTCTCAACAAGTTCAATG+CGG | 0.677431 | tig0004829:+174718 | None:intergenic |
| GCCTTCAAAGAAACCACATG+AGG | 0.683194 | tig0004829:-172939 | Msa1341620:CDS |
| TCTGAAAGGAATTAGTTCTG+GGG | 0.683638 | tig0004829:-173437 | Msa1341620:CDS |
| TAACAACAGCAAGAAACTTG+CGG | 0.687001 | tig0004829:+174163 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATCTATTTTTTCTACATT+AGG | - | tig0004829:172249-172268 | Msa1341620:intron | 15.0% |
| !!! | AATTTTCTTTGATATTGTTT+AGG | - | tig0004829:172312-172331 | Msa1341620:intron | 15.0% |
| !! | AAAATAATAAATCTAATCGT+TGG | + | tig0004829:172548-172567 | None:intergenic | 15.0% |
| !!! | ATATGATTATATCATTCTTT+TGG | + | tig0004829:175139-175158 | None:intergenic | 15.0% |
| !!! | AAACTTTAAAGATATATACA+TGG | + | tig0004829:175339-175358 | None:intergenic | 15.0% |
| !!! | TGCTGCTTAAATATTAAAAA+TGG | - | tig0004829:171893-171912 | Msa1341620:three_prime_UTR | 20.0% |
| !! | TATTAGATACAACATAGATT+CGG | - | tig0004829:171942-171961 | Msa1341620:three_prime_UTR | 20.0% |
| !!! | TTTTGTTCTTTAAATCCTTT+TGG | - | tig0004829:172043-172062 | Msa1341620:intron | 20.0% |
| !! | TATCAAAGAAAATTTAAGTC+TGG | + | tig0004829:172306-172325 | None:intergenic | 20.0% |
| !! | TTTAATTGCATAGAAATTGT+TGG | - | tig0004829:172488-172507 | Msa1341620:intron | 20.0% |
| !!! | ATTTCATAGATTTTATGTTG+TGG | - | tig0004829:172577-172596 | Msa1341620:intron | 20.0% |
| !! | ATAAAGACGAATATATCAAT+TGG | + | tig0004829:173346-173365 | None:intergenic | 20.0% |
| !!! | ATCAATTCAAGAATCTTTTT+TGG | + | tig0004829:173624-173643 | None:intergenic | 20.0% |
| !! | CATAAATTATATTACCTGTT+TGG | + | tig0004829:174586-174605 | None:intergenic | 20.0% |
| !! | ATGTAATATAATCTAACGTA+TGG | - | tig0004829:174629-174648 | Msa1341620:CDS | 20.0% |
| !! | ATCGTCAAAAAATCATATAA+TGG | - | tig0004829:174676-174695 | Msa1341620:CDS | 20.0% |
| !! | AGAATGATATAATCATATAG+AGG | - | tig0004829:175141-175160 | Msa1341620:intron | 20.0% |
| !! | AATAATTAATTCGCTAAACT+TGG | - | tig0004829:175209-175228 | Msa1341620:intron | 20.0% |
| !!! | GTCAGTTTGTTTGTTTATTT+TGG | - | tig0004829:172151-172170 | Msa1341620:intron | 25.0% |
| !! | AATTGATTCATACAAAGCAT+TGG | + | tig0004829:172280-172299 | None:intergenic | 25.0% |
| !! | TCTTTGATATTGTTTAGGTT+CGG | - | tig0004829:172317-172336 | Msa1341620:intron | 25.0% |
| ! | AATCTGTGAAAGAATTTGAT+CGG | + | tig0004829:172358-172377 | None:intergenic | 25.0% |
| !!! | TGTGATCTTATGTTGTTTTT+TGG | - | tig0004829:172455-172474 | Msa1341620:intron | 25.0% |
| !! | TATGAACATTACTGATTACA+AGG | + | tig0004829:172737-172756 | None:intergenic | 25.0% |
| ! | AAATGTATCAGTAACAAGAT+TGG | + | tig0004829:172843-172862 | None:intergenic | 25.0% |
| ! | TTGAATATGTTTGTTTGAGT+AGG | - | tig0004829:173380-173399 | Msa1341620:CDS | 25.0% |
| ! | TGAATGTTGAAAATCTTACA+AGG | - | tig0004829:173643-173662 | Msa1341620:intron | 25.0% |
| ! | GAATGTTGAAAATCTTACAA+GGG | - | tig0004829:173644-173663 | Msa1341620:intron | 25.0% |
| ! | TTAATTCACGAAAACTTACT+TGG | - | tig0004829:173905-173924 | Msa1341620:intron | 25.0% |
| ! | AAATATAGACTCTATCTGAA+AGG | - | tig0004829:173961-173980 | Msa1341620:intron | 25.0% |
| ! | AAAAAGGTTCAATGACATTT+GGG | - | tig0004829:174281-174300 | Msa1341620:CDS | 25.0% |
| !! | TTTTTATTCCATCCTTGAAA+TGG | + | tig0004829:174381-174400 | None:intergenic | 25.0% |
| ! | AACCATAATAATCATGTGAT+TGG | - | tig0004829:174399-174418 | Msa1341620:CDS | 25.0% |
| ! | TACCAATCACATGATTATTA+TGG | + | tig0004829:174404-174423 | None:intergenic | 25.0% |
| ! | GTCAAAATCAATTATTGTCA+CGG | + | tig0004829:174716-174735 | None:intergenic | 25.0% |
| ! | TCAAGTAGAATCAATTATGA+AGG | - | tig0004829:174848-174867 | Msa1341620:intron | 25.0% |
| ! | AATATATACTTTACCTCGTT+TGG | - | tig0004829:175301-175320 | Msa1341620:intron | 25.0% |
| ! | CAATTATATGCTAATTACTC+TGG | - | tig0004829:175414-175433 | Msa1341620:intron | 25.0% |
| !!! | TCTAAACACATTCTTTTTCA+CGG | - | tig0004829:175616-175635 | Msa1341620:CDS | 25.0% |
| ATGAATGATCAGTTTCCTAT+TGG | - | tig0004829:171784-171803 | Msa1341620:three_prime_UTR | 30.0% | |
| AATCATATGTGTTTGTGTGT+AGG | - | tig0004829:172002-172021 | Msa1341620:CDS | 30.0% | |
| !!! | TTGTGACACAACTTTTTTGA+CGG | - | tig0004829:172180-172199 | Msa1341620:intron | 30.0% |
| ACACATATCTCCAAAACTTA+AGG | + | tig0004829:172221-172240 | None:intergenic | 30.0% | |
| GATCAAATTCTTTCACAGAT+TGG | - | tig0004829:172357-172376 | Msa1341620:intron | 30.0% | |
| ! | TGATTTGGCAACATGTAATT+AGG | - | tig0004829:173005-173024 | Msa1341620:CDS | 30.0% |
| CCATTTCCACTATCAAAATT+AGG | + | tig0004829:173067-173086 | None:intergenic | 30.0% | |
| !!! | CCTAATTTTGATAGTGGAAA+TGG | - | tig0004829:173064-173083 | Msa1341620:CDS | 30.0% |
| ATGAAAAGCCAACTAGAAAA+AGG | - | tig0004829:173122-173141 | Msa1341620:CDS | 30.0% | |
| !! | TTATCCTTCCTTTTTCTAGT+TGG | + | tig0004829:173133-173152 | None:intergenic | 30.0% |
| GGATAAGAATGATGATATTG+AGG | - | tig0004829:173147-173166 | Msa1341620:CDS | 30.0% | |
| TAAGAATGATGATATTGAGG+AGG | - | tig0004829:173150-173169 | Msa1341620:CDS | 30.0% | |
| !! | CTTGCTGTTGTTAATCAATT+AGG | - | tig0004829:173259-173278 | Msa1341620:CDS | 30.0% |
| ATATCAATTGGATTGCTATG+AGG | + | tig0004829:173334-173353 | None:intergenic | 30.0% | |
| !! | TAATCATAGGAGAGTATTTG+AGG | + | tig0004829:173480-173499 | None:intergenic | 30.0% |
| TACTCTCCTATGATTAATCT+AGG | - | tig0004829:173484-173503 | Msa1341620:intron | 30.0% | |
| TTCACTCCTAGATTAATCAT+AGG | + | tig0004829:173493-173512 | None:intergenic | 30.0% | |
| TATCGAAAAACTTCATAGCA+CGG | + | tig0004829:173552-173571 | None:intergenic | 30.0% | |
| AAATCTTACAAGGGATAATG+TGG | - | tig0004829:173653-173672 | Msa1341620:intron | 30.0% | |
| AAGAGATAAAGAAAAACACC+TGG | + | tig0004829:173689-173708 | None:intergenic | 30.0% | |
| TATCTGAAAGGAATTAGTTC+TGG | - | tig0004829:173973-173992 | Msa1341620:intron | 30.0% | |
| ! | ATCTGAAAGGAATTAGTTCT+GGG | - | tig0004829:173974-173993 | Msa1341620:intron | 30.0% |
| AAATTGGCATTCTTTGAACA+TGG | + | tig0004829:174215-174234 | None:intergenic | 30.0% | |
| GAAAAAGGTTCAATGACATT+TGG | - | tig0004829:174280-174299 | Msa1341620:CDS | 30.0% | |
| TTGTAAATGTTGAACGAGAA+GGG | - | tig0004829:174451-174470 | Msa1341620:CDS | 30.0% | |
| ATATATGATGAGCAACAAGA+TGG | - | tig0004829:174497-174516 | Msa1341620:CDS | 30.0% | |
| ! | TTTGACAATAAGTGAGTTGA+AGG | - | tig0004829:174730-174749 | Msa1341620:CDS | 30.0% |
| !! | AAGGTAAAGTGTTTTGTGTT+TGG | - | tig0004829:174749-174768 | Msa1341620:intron | 30.0% |
| TTTGTGTGAAAATCAATTCC+AGG | - | tig0004829:174802-174821 | Msa1341620:intron | 30.0% | |
| ! | ATTGATTCTACTTGAAGCTA+TGG | + | tig0004829:174843-174862 | None:intergenic | 30.0% |
| TAGTTGTACCTATCCTTTAA+GGG | + | tig0004829:174967-174986 | None:intergenic | 30.0% | |
| ACGAATAAACCACATACTTA+CGG | + | tig0004829:175113-175132 | None:intergenic | 30.0% | |
| CATATAGAGGTAGCAATAAA+CGG | - | tig0004829:175154-175173 | Msa1341620:intron | 30.0% | |
| !!! | TGAATTTAGTTTTCAGCTCA+AGG | + | tig0004829:175256-175275 | None:intergenic | 30.0% |
| TTATATGCTAATTACTCTGG+TGG | - | tig0004829:175417-175436 | Msa1341620:intron | 30.0% | |
| TATATGCTAATTACTCTGGT+GGG | - | tig0004829:175418-175437 | Msa1341620:intron | 30.0% | |
| AATCAAAGTGACAACAAGAT+TGG | - | tig0004829:175442-175461 | Msa1341620:intron | 30.0% | |
| !! | CTAAACACATTCTTTTTCAC+GGG | - | tig0004829:175617-175636 | Msa1341620:CDS | 30.0% |
| TGATGATAGAACTTGTCTCA+AGG | - | tig0004829:171828-171847 | Msa1341620:three_prime_UTR | 35.0% | |
| ! | TAGAACTTGTCTCAAGGTTT+TGG | - | tig0004829:171834-171853 | Msa1341620:three_prime_UTR | 35.0% |
| TACAACATAGATTCGGACTT+CGG | - | tig0004829:171949-171968 | Msa1341620:three_prime_UTR | 35.0% | |
| ! | TCTTTAAATCCTTTTGGCCT+AGG | - | tig0004829:172049-172068 | Msa1341620:intron | 35.0% |
| TCATCATGATTACAATGCCT+AGG | + | tig0004829:172069-172088 | None:intergenic | 35.0% | |
| !!! | ACTTTTTTGACGGATCTTGA+TGG | - | tig0004829:172190-172209 | Msa1341620:intron | 35.0% |
| ! | GATGGTGTTTCCTTAAGTTT+TGG | - | tig0004829:172208-172227 | Msa1341620:intron | 35.0% |
| TTCACAGATTGGACATGATT+TGG | - | tig0004829:172368-172387 | Msa1341620:intron | 35.0% | |
| TTGTTGGATTCATTAGATCC+AGG | - | tig0004829:172504-172523 | Msa1341620:intron | 35.0% | |
| AAAAGAGTTGCATTACATCC+TGG | + | tig0004829:172525-172544 | None:intergenic | 35.0% | |
| TTCTCTCAACAAGTTCAATG+CGG | + | tig0004829:172697-172716 | None:intergenic | 35.0% | |
| TAATGTTCATATGCCAGACA+TGG | - | tig0004829:172746-172765 | Msa1341620:intron | 35.0% | |
| TTTAAGCTTCTTGAGCTTGT+TGG | - | tig0004829:172774-172793 | Msa1341620:intron | 35.0% | |
| ATAACTCACTTATGACAGGT+AGG | + | tig0004829:172812-172831 | None:intergenic | 35.0% | |
| TTGCATAACTCACTTATGAC+AGG | + | tig0004829:172816-172835 | None:intergenic | 35.0% | |
| TTTCTGCAAATGATGATCCA+AGG | - | tig0004829:172909-172928 | Msa1341620:CDS | 35.0% | |
| GTGATGAAAGGAATTGATCA+TGG | - | tig0004829:172935-172954 | Msa1341620:CDS | 35.0% | |
| ! | TGAAAGAGGTACAGATGATT+TGG | - | tig0004829:172990-173009 | Msa1341620:CDS | 35.0% |
| !! | GATGTGCCTAATTTTGATAG+TGG | - | tig0004829:173058-173077 | Msa1341620:CDS | 35.0% |
| AAAGCCAACTAGAAAAAGGA+AGG | - | tig0004829:173126-173145 | Msa1341620:CDS | 35.0% | |
| TAACAACAGCAAGAAACTTG+CGG | + | tig0004829:173252-173271 | None:intergenic | 35.0% | |
| TAAAGAAAAACACCTGGAGA+TGG | + | tig0004829:173683-173702 | None:intergenic | 35.0% | |
| !! | TCTGAAAGGAATTAGTTCTG+GGG | - | tig0004829:173975-173994 | Msa1341620:intron | 35.0% |
| AATGGGATGTATTTGCTTGT+TGG | + | tig0004829:174005-174024 | None:intergenic | 35.0% | |
| GAGAGAACTGAATCTTGAAT+GGG | + | tig0004829:174022-174041 | None:intergenic | 35.0% | |
| TGAGAGAACTGAATCTTGAA+TGG | + | tig0004829:174023-174042 | None:intergenic | 35.0% | |
| !! | AATGGTCTAAAAGCACTGTT+AGG | + | tig0004829:174099-174118 | None:intergenic | 35.0% |
| CAATATGCATGGATTTCAAC+CGG | - | tig0004829:174167-174186 | Msa1341620:CDS | 35.0% | |
| TGTAAAGAGCAAGAAAACAG+TGG | + | tig0004829:174258-174277 | None:intergenic | 35.0% | |
| ! | CTGTTTTCTTGCTCTTTACA+TGG | - | tig0004829:174258-174277 | Msa1341620:CDS | 35.0% |
| CTTGCTCTTTACATGGAAAA+AGG | - | tig0004829:174265-174284 | Msa1341620:CDS | 35.0% | |
| ! | GGAAGGTAAGAATTTGTTTC+AGG | + | tig0004829:174324-174343 | None:intergenic | 35.0% |
| ACAAATTCTTACCTTCCACA+AGG | - | tig0004829:174327-174346 | Msa1341620:CDS | 35.0% | |
| CAAATTCTTACCTTCCACAA+GGG | - | tig0004829:174328-174347 | Msa1341620:CDS | 35.0% | |
| AAATTCTTACCTTCCACAAG+GGG | - | tig0004829:174329-174348 | Msa1341620:CDS | 35.0% | |
| TAAAAATAACCCCTTGTGGA+AGG | + | tig0004829:174341-174360 | None:intergenic | 35.0% | |
| CTGTTAAAAATAACCCCTTG+TGG | + | tig0004829:174345-174364 | None:intergenic | 35.0% | |
| ! | CATGTGATTGGTAGTTCAAT+AGG | - | tig0004829:174411-174430 | Msa1341620:CDS | 35.0% |
| TCTCGTTCAACATTTACAAC+AGG | + | tig0004829:174450-174469 | None:intergenic | 35.0% | |
| GTTGTAAATGTTGAACGAGA+AGG | - | tig0004829:174450-174469 | Msa1341620:CDS | 35.0% | |
| ! | AAGATAACACCTTCTAGAGA+GGG | + | tig0004829:174927-174946 | None:intergenic | 35.0% |
| ! | AAAGATAACACCTTCTAGAG+AGG | + | tig0004829:174928-174947 | None:intergenic | 35.0% |
| GTAGTTGTACCTATCCTTTA+AGG | + | tig0004829:174968-174987 | None:intergenic | 35.0% | |
| TAAAGGATAGGTACAACTAC+AGG | - | tig0004829:174968-174987 | Msa1341620:intron | 35.0% | |
| AAAGGATAGGTACAACTACA+GGG | - | tig0004829:174969-174988 | Msa1341620:intron | 35.0% | |
| GTAAGTATGTGGTTTATTCG+TGG | - | tig0004829:175112-175131 | Msa1341620:intron | 35.0% | |
| GTTCCAACGTATATTTGAGT+TGG | + | tig0004829:175182-175201 | None:intergenic | 35.0% | |
| CTGATTGAGAAGACAAAACT+TGG | + | tig0004829:175556-175575 | None:intergenic | 35.0% | |
| TTGAGCAAAACTCTTCTTGA+TGG | + | tig0004829:175590-175609 | None:intergenic | 35.0% | |
| !! | TTTTGGAGAGACTTCTCCAA+AGG | - | tig0004829:171851-171870 | Msa1341620:three_prime_UTR | 40.0% |
| !! | TACCATGGTATTGACACCTT+TGG | + | tig0004829:171870-171889 | None:intergenic | 40.0% |
| ATTTAAGCAGCAGCATACCA+TGG | + | tig0004829:171885-171904 | None:intergenic | 40.0% | |
| ATTACAATGCCTAGGCCAAA+AGG | + | tig0004829:172061-172080 | None:intergenic | 40.0% | |
| !! | GATTCATACAAAGCATTGGC+TGG | + | tig0004829:172276-172295 | None:intergenic | 40.0% |
| AGCTTAAATCCATCCATGTC+TGG | + | tig0004829:172762-172781 | None:intergenic | 40.0% | |
| TGCAAATGATGATCCAAGGA+TGG | - | tig0004829:172913-172932 | Msa1341620:CDS | 40.0% | |
| ATTCCTTTCATCACCATCCT+TGG | + | tig0004829:172929-172948 | None:intergenic | 40.0% | |
| GAAACCTGTCACATTGAAAG+AGG | - | tig0004829:172976-172995 | Msa1341620:CDS | 40.0% | |
| TGTACCTCTTTCAATGTGAC+AGG | + | tig0004829:172983-173002 | None:intergenic | 40.0% | |
| AAACTTGCGGTGTAAGTCAT+TGG | + | tig0004829:173239-173258 | None:intergenic | 40.0% | |
| TTCAGTTCTCTCACTAGAGT+TGG | - | tig0004829:174030-174049 | Msa1341620:intron | 40.0% | |
| ! | GCTTTTAGACCATTTCCATC+TGG | - | tig0004829:174105-174124 | Msa1341620:intron | 40.0% |
| TTTAGACCATTTCCATCTGG+TGG | - | tig0004829:174108-174127 | Msa1341620:intron | 40.0% | |
| ! | TCTTTGAACATGGTTCGGAT+TGG | + | tig0004829:174205-174224 | None:intergenic | 40.0% |
| GGCATTCTTTGAACATGGTT+CGG | + | tig0004829:174210-174229 | None:intergenic | 40.0% | |
| TGAGAGGCTACAGAAGAAAT+TGG | + | tig0004829:174231-174250 | None:intergenic | 40.0% | |
| AGAAAACAGTGGATGTTGAG+AGG | + | tig0004829:174247-174266 | None:intergenic | 40.0% | |
| !! | ACTAGCAATGTGCCATTTCA+AGG | - | tig0004829:174366-174385 | Msa1341620:CDS | 40.0% |
| CTCATCATATATGCCTCATG+TGG | + | tig0004829:174489-174508 | None:intergenic | 40.0% | |
| CATCAAAGTCATGACCAAAC+AGG | - | tig0004829:174569-174588 | Msa1341620:intron | 40.0% | |
| CAATTTGTACCCTCTCTAGA+AGG | - | tig0004829:174915-174934 | Msa1341620:intron | 40.0% | |
| CATGATCGCAAAACCCTTAA+AGG | - | tig0004829:174951-174970 | Msa1341620:intron | 40.0% | |
| TCGCAAAACCCTTAAAGGAT+AGG | - | tig0004829:174956-174975 | Msa1341620:intron | 40.0% | |
| !! | AAGGGTGTGTGTAATCCTTT+TGG | - | tig0004829:175005-175024 | Msa1341620:intron | 40.0% |
| CGATTAGACTCAAGTCCAAA+AGG | + | tig0004829:175023-175042 | None:intergenic | 40.0% | |
| !! | GTTGATAGAAGGTGTTGAGA+AGG | - | tig0004829:175050-175069 | Msa1341620:intron | 40.0% |
| GAGCCAACTCAAATATACGT+TGG | - | tig0004829:175176-175195 | Msa1341620:intron | 40.0% | |
| CAGCTCAAGGTCAATTCATT+TGG | + | tig0004829:175243-175262 | None:intergenic | 40.0% | |
| GTTTAATCGTGTACCAAACG+AGG | + | tig0004829:175317-175336 | None:intergenic | 40.0% | |
| GCAAGAACACGCATTCCAAT+AGG | + | tig0004829:171802-171821 | None:intergenic | 45.0% | |
| !! | CTCCAAAGGTGTCAATACCA+TGG | - | tig0004829:171865-171884 | Msa1341620:three_prime_UTR | 45.0% |
| GTTCATATGCCAGACATGGA+TGG | - | tig0004829:172750-172769 | Msa1341620:intron | 45.0% | |
| !! | TGAGCTTGTTGGACTTGAGA+TGG | - | tig0004829:172785-172804 | Msa1341620:intron | 45.0% |
| ! | GATCCAAGGATGGTGATGAA+AGG | - | tig0004829:172923-172942 | Msa1341620:CDS | 45.0% |
| ! | AGAAGAAGCCTCGAGTTGTT+TGG | - | tig0004829:173212-173231 | Msa1341620:CDS | 45.0% |
| TCATTGGACCAAACAACTCG+AGG | + | tig0004829:173223-173242 | None:intergenic | 45.0% | |
| GCACATGCACTTCAGATTGA+AGG | + | tig0004829:173866-173885 | None:intergenic | 45.0% | |
| ATACCACCACCAGATGGAAA+TGG | + | tig0004829:174117-174136 | None:intergenic | 45.0% | |
| CCATGCATATTGACACTAGC+AGG | + | tig0004829:174159-174178 | None:intergenic | 45.0% | |
| CCTGCTAGTGTCAATATGCA+TGG | - | tig0004829:174156-174175 | Msa1341620:CDS | 45.0% | |
| !! | GCAATGTGCCATTTCAAGGA+TGG | - | tig0004829:174370-174389 | Msa1341620:CDS | 45.0% |
| GCCTTCAAAGAAACCACATG+AGG | - | tig0004829:174473-174492 | Msa1341620:CDS | 45.0% | |
| GCCTCATGTGGTTTCTTTGA+AGG | + | tig0004829:174477-174496 | None:intergenic | 45.0% | |
| !! | GACTTTGATGACGTCTTCGA+GGG | + | tig0004829:174559-174578 | None:intergenic | 45.0% |
| !! | TGACTTTGATGACGTCTTCG+AGG | + | tig0004829:174560-174579 | None:intergenic | 45.0% |
| ! | TGGTGTGTAGCTTTTGATCC+TGG | + | tig0004829:174823-174842 | None:intergenic | 45.0% |
| !! | ATCGTCTGCGAGTTGATAGA+AGG | - | tig0004829:175039-175058 | Msa1341620:intron | 45.0% |
| !! | GATAGAAGGTGTTGAGAAGG+AGG | - | tig0004829:175053-175072 | Msa1341620:intron | 45.0% |
| GAAAAACACCTGGAGATGGC+TGG | + | tig0004829:173679-173698 | None:intergenic | 50.0% | |
| AGACCATTTCCATCTGGTGG+TGG | - | tig0004829:174111-174130 | Msa1341620:intron | 50.0% | |
| CTACTCATACCACCACCAGA+TGG | + | tig0004829:174123-174142 | None:intergenic | 50.0% | |
| ACAGGGTGCATATCTTCGCA+AGG | - | tig0004829:174986-175005 | Msa1341620:intron | 50.0% | |
| CAGGGTGCATATCTTCGCAA+GGG | - | tig0004829:174987-175006 | Msa1341620:intron | 50.0% | |
| ATACTTACGGCTGACGAAGG+CGG | + | tig0004829:175100-175119 | None:intergenic | 50.0% | |
| CACATACTTACGGCTGACGA+AGG | + | tig0004829:175103-175122 | None:intergenic | 50.0% | |
| CTTCGTCAGCCGTAAGTATG+TGG | - | tig0004829:175101-175120 | Msa1341620:intron | 50.0% | |
| GGTTCGTGCACTTTGAGCAG+TGG | + | tig0004829:172676-172695 | None:intergenic | 55.0% | |
| CGAGGCTTCTTCTGTGCTGT+TGG | + | tig0004829:173205-173224 | None:intergenic | 55.0% | |
| TAATGTGGCCAGCCATCTCC+AGG | - | tig0004829:173668-173687 | Msa1341620:intron | 55.0% | |
| !! | GTTCGGATTGGCGTGAGCTT+TGG | + | tig0004829:174193-174212 | None:intergenic | 55.0% |
| ! | GGATTGGCGTGAGCTTTGGC+CGG | + | tig0004829:174189-174208 | None:intergenic | 60.0% |
| AGGAGGCCTCCGTCGTTGAT+CGG | - | tig0004829:175070-175089 | Msa1341620:intron | 60.0% | |
| GGATCGCCGATCAACGACGG+AGG | + | tig0004829:175079-175098 | None:intergenic | 65.0% | |
| GGCGGATCGCCGATCAACGA+CGG | + | tig0004829:175082-175101 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0004829 | gene | 171784 | 175650 | 171784 | ID=Msa1341620;Name=Msa1341620 |
| tig0004829 | mRNA | 171784 | 175650 | 171784 | ID=Msa1341620-mRNA-1;Parent=Msa1341620;Name=Msa1341620-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0.16|0.14|0.85|0.66|0.71|7|198|445 |
| tig0004829 | exon | 171784 | 172023 | 171784 | ID=Msa1341620-mRNA-1:exon:3251;Parent=Msa1341620-mRNA-1 |
| tig0004829 | exon | 172844 | 173473 | 172844 | ID=Msa1341620-mRNA-1:exon:3250;Parent=Msa1341620-mRNA-1 |
| tig0004829 | exon | 173787 | 173821 | 173787 | ID=Msa1341620-mRNA-1:exon:3249;Parent=Msa1341620-mRNA-1 |
| tig0004829 | exon | 174145 | 174528 | 174145 | ID=Msa1341620-mRNA-1:exon:3248;Parent=Msa1341620-mRNA-1 |
| tig0004829 | exon | 174612 | 174764 | 174612 | ID=Msa1341620-mRNA-1:exon:3247;Parent=Msa1341620-mRNA-1 |
| tig0004829 | exon | 174906 | 174933 | 174906 | ID=Msa1341620-mRNA-1:exon:3246;Parent=Msa1341620-mRNA-1 |
| tig0004829 | exon | 175585 | 175650 | 175585 | ID=Msa1341620-mRNA-1:exon:3245;Parent=Msa1341620-mRNA-1 |
| tig0004829 | CDS | 175585 | 175650 | 175585 | ID=Msa1341620-mRNA-1:cds;Parent=Msa1341620-mRNA-1 |
| tig0004829 | CDS | 174906 | 174933 | 174906 | ID=Msa1341620-mRNA-1:cds;Parent=Msa1341620-mRNA-1 |
| tig0004829 | CDS | 174612 | 174764 | 174612 | ID=Msa1341620-mRNA-1:cds;Parent=Msa1341620-mRNA-1 |
| tig0004829 | CDS | 174145 | 174528 | 174145 | ID=Msa1341620-mRNA-1:cds;Parent=Msa1341620-mRNA-1 |
| tig0004829 | CDS | 173787 | 173821 | 173787 | ID=Msa1341620-mRNA-1:cds;Parent=Msa1341620-mRNA-1 |
| tig0004829 | CDS | 172844 | 173473 | 172844 | ID=Msa1341620-mRNA-1:cds;Parent=Msa1341620-mRNA-1 |
| tig0004829 | CDS | 171982 | 172023 | 171982 | ID=Msa1341620-mRNA-1:cds;Parent=Msa1341620-mRNA-1 |
| tig0004829 | three_prime_UTR | 171784 | 171981 | 171784 | ID=Msa1341620-mRNA-1:three_prime_utr;Parent=Msa1341620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
