Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1341770 | XP_013450620.1 | 81.295 | 417 | 49 | 11 | 16 | 424 | 62 | 457 | 0.0 | 563 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1341770 | sp|Q7F9W2|Y4814_ORYSJ | 67.296 | 159 | 37 | 2 | 66 | 224 | 101 | 244 | 1.99e-67 | 220 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1341770 | A0A072U667 | 81.295 | 417 | 49 | 11 | 16 | 424 | 62 | 457 | 0.0 | 563 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1341770 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1341770 | MtrunA17_Chr7g0276471 | 81.295 | 417 | 49 | 11 | 16 | 424 | 62 | 457 | 0.0 | 563 |
| Msa1341770 | MtrunA17_Chr8g0345771 | 43.508 | 439 | 146 | 14 | 23 | 416 | 127 | 508 | 5.31e-89 | 279 |
| Msa1341770 | MtrunA17_Chr1g0178071 | 64.885 | 131 | 38 | 3 | 56 | 180 | 53 | 181 | 2.12e-49 | 170 |
| Msa1341770 | MtrunA17_Chr7g0266821 | 74.257 | 101 | 23 | 2 | 79 | 179 | 65 | 162 | 9.68e-46 | 160 |
| Msa1341770 | MtrunA17_Chr5g0422501 | 64.957 | 117 | 31 | 2 | 71 | 179 | 232 | 346 | 4.79e-44 | 159 |
| Msa1341770 | MtrunA17_Chr1g0198661 | 61.789 | 123 | 32 | 2 | 71 | 180 | 188 | 308 | 7.37e-43 | 154 |
| Msa1341770 | MtrunA17_Chr1g0213701 | 48.718 | 117 | 52 | 2 | 46 | 162 | 138 | 246 | 2.41e-30 | 119 |
| Msa1341770 | MtrunA17_Chr4g0012861 | 40.659 | 91 | 49 | 3 | 74 | 162 | 314 | 401 | 5.45e-14 | 74.3 |
| Msa1341770 | MtrunA17_Chr2g0282961 | 37.168 | 113 | 70 | 1 | 52 | 163 | 135 | 247 | 1.05e-13 | 73.2 |
| Msa1341770 | MtrunA17_Chr2g0281191 | 38.679 | 106 | 57 | 4 | 74 | 177 | 352 | 451 | 1.48e-13 | 72.8 |
| Msa1341770 | MtrunA17_Chr5g0432721 | 37.363 | 91 | 52 | 3 | 74 | 162 | 321 | 408 | 1.77e-13 | 72.4 |
| Msa1341770 | MtrunA17_Chr3g0107701 | 39.560 | 91 | 50 | 3 | 74 | 162 | 338 | 425 | 5.76e-13 | 70.9 |
| Msa1341770 | MtrunA17_Chr7g0244871 | 38.889 | 90 | 50 | 3 | 74 | 161 | 12 | 98 | 8.63e-13 | 64.3 |
| Msa1341770 | MtrunA17_Chr4g0046371 | 39.000 | 100 | 60 | 1 | 65 | 163 | 138 | 237 | 9.06e-13 | 70.1 |
| Msa1341770 | MtrunA17_Chr4g0029671 | 36.111 | 108 | 68 | 1 | 73 | 179 | 164 | 271 | 3.13e-11 | 65.5 |
| Msa1341770 | MtrunA17_Chr8g0389081 | 34.821 | 112 | 67 | 3 | 73 | 183 | 134 | 240 | 6.69e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1341770 | AT2G46870.1 | 43.902 | 328 | 72 | 12 | 61 | 372 | 21 | 252 | 9.49e-68 | 218 |
| Msa1341770 | AT1G01030.2 | 75.781 | 128 | 30 | 1 | 70 | 196 | 51 | 178 | 4.13e-63 | 207 |
| Msa1341770 | AT1G01030.1 | 79.339 | 121 | 24 | 1 | 70 | 189 | 51 | 171 | 2.33e-61 | 203 |
| Msa1341770 | AT3G61970.1 | 40.575 | 313 | 84 | 9 | 60 | 369 | 11 | 224 | 1.84e-58 | 193 |
| Msa1341770 | AT4G01500.1 | 41.379 | 319 | 95 | 12 | 71 | 373 | 32 | 274 | 2.87e-57 | 191 |
| Msa1341770 | AT3G11580.4 | 63.492 | 126 | 33 | 2 | 66 | 180 | 20 | 143 | 8.28e-51 | 171 |
| Msa1341770 | AT3G11580.2 | 63.492 | 126 | 33 | 2 | 66 | 180 | 20 | 143 | 8.28e-51 | 171 |
| Msa1341770 | AT3G11580.5 | 63.492 | 126 | 33 | 2 | 66 | 180 | 20 | 143 | 8.28e-51 | 171 |
| Msa1341770 | AT3G11580.1 | 63.492 | 126 | 33 | 2 | 66 | 180 | 20 | 143 | 2.42e-50 | 171 |
| Msa1341770 | AT3G11580.3 | 64.000 | 125 | 32 | 2 | 66 | 179 | 20 | 142 | 3.16e-49 | 171 |
| Msa1341770 | AT2G36080.4 | 69.231 | 117 | 31 | 2 | 67 | 180 | 30 | 144 | 5.71e-48 | 162 |
| Msa1341770 | AT2G36080.2 | 69.231 | 117 | 31 | 2 | 67 | 180 | 30 | 144 | 5.71e-48 | 162 |
| Msa1341770 | AT2G36080.1 | 69.231 | 117 | 31 | 2 | 67 | 180 | 30 | 144 | 9.08e-48 | 164 |
| Msa1341770 | AT2G36080.3 | 69.231 | 117 | 31 | 2 | 67 | 180 | 30 | 144 | 9.16e-48 | 163 |
| Msa1341770 | AT5G06250.5 | 65.546 | 119 | 29 | 2 | 71 | 179 | 42 | 158 | 1.36e-47 | 164 |
| Msa1341770 | AT5G06250.2 | 65.546 | 119 | 29 | 2 | 71 | 179 | 42 | 158 | 1.77e-47 | 164 |
| Msa1341770 | AT5G06250.4 | 65.546 | 119 | 29 | 2 | 71 | 179 | 42 | 158 | 2.01e-47 | 164 |
| Msa1341770 | AT1G13260.1 | 71.429 | 112 | 29 | 2 | 72 | 182 | 185 | 294 | 2.27e-47 | 166 |
| Msa1341770 | AT1G68840.2 | 69.828 | 116 | 31 | 3 | 67 | 180 | 180 | 293 | 2.54e-47 | 166 |
| Msa1341770 | AT1G68840.1 | 69.828 | 116 | 31 | 3 | 67 | 180 | 180 | 293 | 2.54e-47 | 166 |
| Msa1341770 | AT5G06250.1 | 65.000 | 120 | 30 | 2 | 71 | 180 | 42 | 159 | 3.30e-47 | 163 |
| Msa1341770 | AT5G06250.3 | 65.000 | 120 | 30 | 2 | 71 | 180 | 42 | 159 | 3.64e-47 | 163 |
| Msa1341770 | AT3G25730.1 | 59.524 | 126 | 42 | 3 | 62 | 180 | 166 | 289 | 4.87e-44 | 157 |
| Msa1341770 | AT1G25560.1 | 62.295 | 122 | 36 | 2 | 67 | 180 | 187 | 306 | 5.32e-44 | 157 |
| Msa1341770 | AT1G50680.1 | 50.000 | 100 | 39 | 2 | 73 | 161 | 155 | 254 | 4.39e-26 | 108 |
| Msa1341770 | AT1G51120.1 | 49.485 | 97 | 41 | 1 | 73 | 161 | 176 | 272 | 1.54e-24 | 104 |
| Msa1341770 | AT2G30470.1 | 39.560 | 91 | 50 | 3 | 74 | 162 | 294 | 381 | 8.25e-14 | 73.9 |
| Msa1341770 | AT4G32010.1 | 40.000 | 95 | 52 | 3 | 74 | 166 | 285 | 376 | 9.04e-14 | 73.9 |
| Msa1341770 | AT4G32010.2 | 40.000 | 95 | 52 | 3 | 74 | 166 | 281 | 372 | 9.18e-14 | 73.9 |
| Msa1341770 | AT4G21550.1 | 36.283 | 113 | 64 | 4 | 74 | 185 | 327 | 432 | 4.78e-13 | 71.6 |
| Msa1341770 | AT4G21550.2 | 36.283 | 113 | 64 | 4 | 74 | 185 | 327 | 432 | 9.86e-13 | 70.5 |
| Msa1341770 | AT4G21550.3 | 36.283 | 113 | 64 | 4 | 74 | 185 | 327 | 432 | 2.01e-12 | 69.3 |
| Msa1341770 | AT2G33860.1 | 41.304 | 92 | 53 | 1 | 73 | 163 | 157 | 248 | 6.00e-12 | 68.2 |
| Msa1341770 | AT1G35240.1 | 36.893 | 103 | 59 | 2 | 75 | 171 | 126 | 228 | 4.34e-11 | 65.1 |
| Msa1341770 | AT2G33860.2 | 40.659 | 91 | 53 | 1 | 74 | 163 | 1 | 91 | 5.38e-11 | 64.7 |
Find 131 sgRNAs with CRISPR-Local
Find 294 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTTCGATCTTCAAAATTT+AGG | 0.195221 | tig0004839:+30989 | None:intergenic |
| TTCAGTGGTGCCGGCGATAT+TGG | 0.224155 | tig0004839:+30074 | None:intergenic |
| GGAAAACGACTGAGACTATT+TGG | 0.226531 | tig0004839:-30259 | Msa1341770:CDS |
| CCCTCTTCTACAACAACTTC+TGG | 0.253546 | tig0004839:-30160 | Msa1341770:CDS |
| GTAGAAGGGGCAGCGTAATT+AGG | 0.294314 | tig0004839:+30619 | None:intergenic |
| AACTTCGCTGCACTTTGATT+TGG | 0.298974 | tig0004839:-30110 | Msa1341770:CDS |
| TACTTCTCTGCGTGCTGCTT+TGG | 0.305864 | tig0004839:+31051 | None:intergenic |
| ATGGTAAGATGTGGCGGTTC+AGG | 0.308215 | tig0004839:-30969 | Msa1341770:CDS |
| GAATCAATTATCATATTCAT+AGG | 0.331308 | tig0004839:+30328 | None:intergenic |
| GGCGGTTCAGGTATTCATAT+TGG | 0.345717 | tig0004839:-30957 | Msa1341770:CDS |
| GTGGTTGATGGTGGCGTAAT+TGG | 0.354445 | tig0004839:+30433 | None:intergenic |
| TGAAGAGGAGGTAGATTTGA+TGG | 0.354882 | tig0004839:-31259 | Msa1341770:CDS |
| TCAGTGGTGCCGGCGATATT+GGG | 0.365725 | tig0004839:+30075 | None:intergenic |
| AAAGGCAGTGGAGGAGGAGG+AGG | 0.366186 | tig0004839:+30733 | None:intergenic |
| CGCAGAGAAGTACTTCCCTT+TGG | 0.372478 | tig0004839:-31040 | Msa1341770:CDS |
| GAAAACGACTGAGACTATTT+GGG | 0.373722 | tig0004839:-30258 | Msa1341770:CDS |
| TGAGGATGAGATATTGTAGA+AGG | 0.383802 | tig0004839:+30604 | None:intergenic |
| ACCAAAATGAATCCATGGTT+GGG | 0.385348 | tig0004839:-31453 | None:intergenic |
| CAGAGTTATGTGATGACAAA+AGG | 0.396646 | tig0004839:-30925 | Msa1341770:CDS |
| TAGAAAGGCAGTGGAGGAGG+AGG | 0.402946 | tig0004839:+30730 | None:intergenic |
| TAGGAAGGTGAGAGTATTGA+GGG | 0.405354 | tig0004839:+30644 | None:intergenic |
| AGATAGAAAGGCAGTGGAGG+AGG | 0.405784 | tig0004839:+30727 | None:intergenic |
| CCACCAGCTGTGGTGGTTGA+TGG | 0.413549 | tig0004839:+30421 | None:intergenic |
| AAGGGCAATGACGAAGGATT+AGG | 0.420096 | tig0004839:-31204 | Msa1341770:CDS |
| GGGGCAGCGTAATTAGGATT+AGG | 0.420563 | tig0004839:+30625 | None:intergenic |
| AATCATCACTATTCATCATA+TGG | 0.429981 | tig0004839:-30697 | Msa1341770:CDS |
| TAGAAATTGTTGTAATATTG+AGG | 0.434930 | tig0004839:+30586 | None:intergenic |
| GACGAAGGATTAGGAGGAAT+AGG | 0.436627 | tig0004839:-31195 | Msa1341770:CDS |
| TTGATGGAGTTAAGACTTGG+AGG | 0.438088 | tig0004839:-31243 | Msa1341770:CDS |
| GAGGGTGGAAGTTGACGATT+AGG | 0.443967 | tig0004839:+30178 | None:intergenic |
| CCTCTTCTACAACAACTTCT+GGG | 0.444861 | tig0004839:-30159 | Msa1341770:CDS |
| GACACAGATTGTACATAGAT+TGG | 0.447780 | tig0004839:-30822 | Msa1341770:CDS |
| GATATTGAGGGATGAGGTGG+TGG | 0.450649 | tig0004839:+30755 | None:intergenic |
| GGAAGATAGAAAGGCAGTGG+AGG | 0.452590 | tig0004839:+30724 | None:intergenic |
| GCGAGGAGGTGAGATAATAG+AGG | 0.457021 | tig0004839:+30455 | None:intergenic |
| GGAGGAAGATAGAAAGGCAG+TGG | 0.458358 | tig0004839:+30721 | None:intergenic |
| CCGCGGTGATGATGTGCAAC+TGG | 0.459480 | tig0004839:+30301 | None:intergenic |
| ATCATGATCAACATCACATA+GGG | 0.468716 | tig0004839:-30135 | Msa1341770:CDS |
| AGGTGATCAGCAGCAGGAGC+AGG | 0.469663 | tig0004839:+30514 | None:intergenic |
| GATTCTTCTACCAACGAGAA+AGG | 0.473959 | tig0004839:-31018 | Msa1341770:CDS |
| GAGTTAAGACTTGGAGGAGG+GGG | 0.479014 | tig0004839:-31237 | Msa1341770:CDS |
| TGGAGTTAAGACTTGGAGGA+GGG | 0.479526 | tig0004839:-31239 | Msa1341770:CDS |
| CGGCGATATTGGGAATTAGA+AGG | 0.483289 | tig0004839:+30085 | None:intergenic |
| CGAGGAGGTGAGATAATAGA+GGG | 0.488870 | tig0004839:+30456 | None:intergenic |
| CACCAAAATGAATCCATGGT+TGG | 0.489235 | tig0004839:-31454 | None:intergenic |
| GATTTGATGGAGTTAAGACT+TGG | 0.489573 | tig0004839:-31246 | Msa1341770:CDS |
| TATGATGAATAGTGATGATT+GGG | 0.494045 | tig0004839:+30700 | None:intergenic |
| GAGGAGGAGGAGGATATTGA+GGG | 0.497580 | tig0004839:+30743 | None:intergenic |
| TTAGGAAGGTGAGAGTATTG+AGG | 0.500486 | tig0004839:+30643 | None:intergenic |
| CAGCAGCAGGAGCAGGGTGG+TGG | 0.502611 | tig0004839:+30521 | None:intergenic |
| GAGGATGAGATATTGTAGAA+GGG | 0.507152 | tig0004839:+30605 | None:intergenic |
| CCACCATCAACCACCACAGC+TGG | 0.507318 | tig0004839:-30424 | Msa1341770:CDS |
| ATTCTTCTACCAACGAGAAA+GGG | 0.509922 | tig0004839:-31017 | Msa1341770:CDS |
| ATATGATGAATAGTGATGAT+TGG | 0.513248 | tig0004839:+30699 | None:intergenic |
| TTCTTCAAATTCAAAGGATG+AGG | 0.513842 | tig0004839:-31169 | Msa1341770:CDS |
| GTTTCTTCTCCTTAACGAAA+CGG | 0.517535 | tig0004839:+30896 | None:intergenic |
| TTCTTCTTCAGCACCACCAC+AGG | 0.518188 | tig0004839:-30209 | Msa1341770:CDS |
| AGGATGTTCTTCAAATTCAA+AGG | 0.518491 | tig0004839:-31175 | Msa1341770:CDS |
| AGGGTGGAGCCGTTTCGTTA+AGG | 0.519476 | tig0004839:-30905 | Msa1341770:CDS |
| TTTCAGGGATCCGTGGTGCA+AGG | 0.522724 | tig0004839:-30382 | Msa1341770:CDS |
| TGATTGGGAGGAAGATAGAA+AGG | 0.523415 | tig0004839:+30715 | None:intergenic |
| AGGATGAGATATTGTAGAAG+GGG | 0.527536 | tig0004839:+30606 | None:intergenic |
| GAGACTATTTGGGGTTAACA+TGG | 0.535206 | tig0004839:-30248 | Msa1341770:CDS |
| GATATGATCTTCAGTGGTGC+CGG | 0.535398 | tig0004839:+30065 | None:intergenic |
| ATGGAGTTAAGACTTGGAGG+AGG | 0.540445 | tig0004839:-31240 | Msa1341770:CDS |
| AGAGCATATGTTTGATAAAG+CGG | 0.543449 | tig0004839:-31115 | Msa1341770:CDS |
| GGAGTTAAGACTTGGAGGAG+GGG | 0.544084 | tig0004839:-31238 | Msa1341770:CDS |
| TTCAGGGATCCGTGGTGCAA+GGG | 0.545428 | tig0004839:-30381 | Msa1341770:CDS |
| CGTTGGTAGAAGAATCCAAA+GGG | 0.545569 | tig0004839:+31025 | None:intergenic |
| AGGGTTACAGACGTCACAGC+TGG | 0.549480 | tig0004839:-31328 | Msa1341770:intron |
| GAGGATATTGAGGGATGAGG+TGG | 0.549967 | tig0004839:+30752 | None:intergenic |
| TTCAAATTCAAAGGATGAGG+AGG | 0.550070 | tig0004839:-31166 | Msa1341770:CDS |
| TGTACATAGATTGGAGGCCA+AGG | 0.550302 | tig0004839:-30813 | Msa1341770:CDS |
| CCCAGAAGTTGTTGTAGAAG+AGG | 0.550466 | tig0004839:+30159 | None:intergenic |
| CCAAAATGAATCCATGGTTG+GGG | 0.554397 | tig0004839:-31452 | None:intergenic |
| TTCAGCTTCCCTACGTCACT+AGG | 0.557671 | tig0004839:+31087 | None:intergenic |
| CACTATTCATCATATGGTGG+TGG | 0.562154 | tig0004839:-30691 | Msa1341770:CDS |
| AGAGTTATGTGATGACAAAA+GGG | 0.563519 | tig0004839:-30924 | Msa1341770:CDS |
| GAGGAGGATATTGAGGGATG+AGG | 0.567145 | tig0004839:+30749 | None:intergenic |
| GGCAATGACGAAGGATTAGG+AGG | 0.574623 | tig0004839:-31201 | Msa1341770:CDS |
| TTAACAAGGTGATCAGCAGC+AGG | 0.575298 | tig0004839:+30508 | None:intergenic |
| TGTGCAATTCAGCACGTCCA+CGG | 0.575558 | tig0004839:+30845 | None:intergenic |
| CCAGAAGTTGTTGTAGAAGA+GGG | 0.577780 | tig0004839:+30160 | None:intergenic |
| AATCAATTATCATATTCATA+GGG | 0.579857 | tig0004839:+30329 | None:intergenic |
| GAGTACTGAGAGTGTGCCCT+TGG | 0.581237 | tig0004839:+30796 | None:intergenic |
| CTTCTAATTCCCAATATCGC+CGG | 0.581436 | tig0004839:-30084 | Msa1341770:CDS |
| TTAGGCATTGCCGCCTGTGG+TGG | 0.586107 | tig0004839:+30196 | None:intergenic |
| GATCATGATCAACATCACAT+AGG | 0.586128 | tig0004839:-30136 | Msa1341770:CDS |
| CACACCACCACCAGCTGTGG+TGG | 0.589837 | tig0004839:+30414 | None:intergenic |
| TGGGAAGTTGAATGAAGAGG+AGG | 0.590300 | tig0004839:-31271 | Msa1341770:CDS |
| CACCACAGCTGGTGGTGGTG+TGG | 0.591127 | tig0004839:-30413 | Msa1341770:CDS |
| GGTGATCAGCAGCAGGAGCA+GGG | 0.594253 | tig0004839:+30515 | None:intergenic |
| AAGGTGAGAGTATTGAGGGG+AGG | 0.594874 | tig0004839:+30648 | None:intergenic |
| AAGGAGAAGAAACTTGATGC+TGG | 0.595535 | tig0004839:-30886 | Msa1341770:CDS |
| ATCCACACCACCACCAGCTG+TGG | 0.603339 | tig0004839:+30411 | None:intergenic |
| ACAGATTGTACATAGATTGG+AGG | 0.603584 | tig0004839:-30819 | Msa1341770:CDS |
| TAGTATTAACATTGCCTCCG+CGG | 0.604612 | tig0004839:+30284 | None:intergenic |
| CGGTGACACCTAGTGACGTA+GGG | 0.607439 | tig0004839:-31095 | Msa1341770:CDS |
| CGATTAGGCATTGCCGCCTG+TGG | 0.607948 | tig0004839:+30193 | None:intergenic |
| CCATCAACCACCACAGCTGG+TGG | 0.608577 | tig0004839:-30421 | Msa1341770:CDS |
| AAGATCCCAAACCCCAACCA+TGG | 0.608616 | tig0004839:+31441 | None:intergenic |
| ATCGAAATGGTAAGATGTGG+CGG | 0.613418 | tig0004839:-30975 | Msa1341770:CDS |
| CCAGCTGTGGTGGTTGATGG+TGG | 0.616460 | tig0004839:+30424 | None:intergenic |
| CTCTTCTACAACAACTTCTG+GGG | 0.618726 | tig0004839:-30158 | Msa1341770:CDS |
| AGGAAGGTGAGAGTATTGAG+GGG | 0.620927 | tig0004839:+30645 | None:intergenic |
| AAGAGCAAGGGCAATGACGA+AGG | 0.626355 | tig0004839:-31210 | Msa1341770:CDS |
| CATCACTATTCATCATATGG+TGG | 0.627152 | tig0004839:-30694 | Msa1341770:CDS |
| GAAGTTGTTGTAGAAGAGGG+TGG | 0.628343 | tig0004839:+30163 | None:intergenic |
| CAGCGTAATTAGGATTAGGA+AGG | 0.629941 | tig0004839:+30629 | None:intergenic |
| TCAACCACCACAGCTGGTGG+TGG | 0.631467 | tig0004839:-30418 | Msa1341770:CDS |
| TTCTTCAGCACCACCACAGG+CGG | 0.633356 | tig0004839:-30206 | Msa1341770:CDS |
| AAAACGACTGAGACTATTTG+GGG | 0.634135 | tig0004839:-30257 | Msa1341770:CDS |
| GATGAATAGTGATGATTGGG+AGG | 0.640962 | tig0004839:+30703 | None:intergenic |
| GAGGAGGTGAGATAATAGAG+GGG | 0.642836 | tig0004839:+30457 | None:intergenic |
| GGTTGGGAAGTTGAATGAAG+AGG | 0.643292 | tig0004839:-31274 | Msa1341770:CDS |
| TGATGGTGGCGTAATTGGCG+AGG | 0.643835 | tig0004839:+30438 | None:intergenic |
| GCGGTGACACCTAGTGACGT+AGG | 0.646130 | tig0004839:-31096 | Msa1341770:CDS |
| AAGATCGAAATGGTAAGATG+TGG | 0.654473 | tig0004839:-30978 | Msa1341770:CDS |
| GTACATAGATTGGAGGCCAA+GGG | 0.664207 | tig0004839:-30812 | Msa1341770:CDS |
| GGAGGCAATGTTAATACTAG+CGG | 0.665755 | tig0004839:-30280 | Msa1341770:CDS |
| GTTATGTGATGACAAAAGGG+TGG | 0.673333 | tig0004839:-30921 | Msa1341770:CDS |
| TTGTTGATGCCCTTGCACCA+CGG | 0.680815 | tig0004839:+30372 | None:intergenic |
| TCGTTGGTAGAAGAATCCAA+AGG | 0.680986 | tig0004839:+31024 | None:intergenic |
| CATGATCAACATCACATAGG+GGG | 0.690937 | tig0004839:-30133 | Msa1341770:CDS |
| GTTGCACATCATCACCGCGG+AGG | 0.703943 | tig0004839:-30298 | Msa1341770:CDS |
| GATCAGCAGCAGGAGCAGGG+TGG | 0.705208 | tig0004839:+30518 | None:intergenic |
| TCATGATCAACATCACATAG+GGG | 0.705858 | tig0004839:-30134 | Msa1341770:CDS |
| TGGTGGCGTAATTGGCGAGG+AGG | 0.722964 | tig0004839:+30441 | None:intergenic |
| GCAATTCAGCACGTCCACGG+TGG | 0.740263 | tig0004839:+30848 | None:intergenic |
| CCAGTTGCACATCATCACCG+CGG | 0.781500 | tig0004839:-30301 | Msa1341770:CDS |
| GACATTGTATCATTCCACCG+TGG | 0.786574 | tig0004839:-30862 | Msa1341770:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATCAATTCAATCTATATT+TGG | - | tig0004839:30107-30126 | Msa1341770:CDS | 15.0% |
| !! | AATCAATTATCATATTCATA+GGG | + | tig0004839:31188-31207 | None:intergenic | 15.0% |
| !! | AAATCAATTCAATCTATATT+TGG | - | tig0004839:30107-30126 | Msa1341770:CDS | 15.0% |
| !! | AATCAATTATCATATTCATA+GGG | + | tig0004839:31188-31207 | None:intergenic | 15.0% |
| !! | TAGAAATTGTTGTAATATTG+AGG | + | tig0004839:30931-30950 | None:intergenic | 20.0% |
| !! | GAATCAATTATCATATTCAT+AGG | + | tig0004839:31189-31208 | None:intergenic | 20.0% |
| !! | TAGAAATTGTTGTAATATTG+AGG | + | tig0004839:30931-30950 | None:intergenic | 20.0% |
| !! | GAATCAATTATCATATTCAT+AGG | + | tig0004839:31189-31208 | None:intergenic | 20.0% |
| ! | TCAATTCAATCTATATTTGG+TGG | - | tig0004839:30110-30129 | Msa1341770:CDS | 25.0% |
| !! | ATGAATTAATTTGATCCACT+TGG | - | tig0004839:30156-30175 | Msa1341770:CDS | 25.0% |
| ! | CATTTCGATCTTCAAAATTT+AGG | + | tig0004839:30528-30547 | None:intergenic | 25.0% |
| !!! | CTAAATTTTGAAGATCGAAA+TGG | - | tig0004839:30526-30545 | Msa1341770:CDS | 25.0% |
| ! | TATGATGAATAGTGATGATT+GGG | + | tig0004839:30817-30836 | None:intergenic | 25.0% |
| ! | ATATGATGAATAGTGATGAT+TGG | + | tig0004839:30818-30837 | None:intergenic | 25.0% |
| ! | AATCATCACTATTCATCATA+TGG | - | tig0004839:30817-30836 | Msa1341770:CDS | 25.0% |
| ! | TCAATTCAATCTATATTTGG+TGG | - | tig0004839:30110-30129 | Msa1341770:CDS | 25.0% |
| !! | ATGAATTAATTTGATCCACT+TGG | - | tig0004839:30156-30175 | Msa1341770:CDS | 25.0% |
| ! | CATTTCGATCTTCAAAATTT+AGG | + | tig0004839:30528-30547 | None:intergenic | 25.0% |
| !!! | CTAAATTTTGAAGATCGAAA+TGG | - | tig0004839:30526-30545 | Msa1341770:CDS | 25.0% |
| ! | TATGATGAATAGTGATGATT+GGG | + | tig0004839:30817-30836 | None:intergenic | 25.0% |
| ! | ATATGATGAATAGTGATGAT+TGG | + | tig0004839:30818-30837 | None:intergenic | 25.0% |
| ! | AATCATCACTATTCATCATA+TGG | - | tig0004839:30817-30836 | Msa1341770:CDS | 25.0% |
| TTGATCCACTTGGTATAATT+AGG | - | tig0004839:30166-30185 | Msa1341770:CDS | 30.0% | |
| TGATCCACTTGGTATAATTA+GGG | - | tig0004839:30167-30186 | Msa1341770:CDS | 30.0% | |
| AGGATGTTCTTCAAATTCAA+AGG | - | tig0004839:30339-30358 | Msa1341770:CDS | 30.0% | |
| TTCTTCAAATTCAAAGGATG+AGG | - | tig0004839:30345-30364 | Msa1341770:CDS | 30.0% | |
| AGAGCATATGTTTGATAAAG+CGG | - | tig0004839:30399-30418 | Msa1341770:CDS | 30.0% | |
| AGAGTTATGTGATGACAAAA+GGG | - | tig0004839:30590-30609 | Msa1341770:CDS | 30.0% | |
| ATCATGATCAACATCACATA+GGG | - | tig0004839:31379-31398 | Msa1341770:intron | 30.0% | |
| TTGATCCACTTGGTATAATT+AGG | - | tig0004839:30166-30185 | Msa1341770:CDS | 30.0% | |
| TGATCCACTTGGTATAATTA+GGG | - | tig0004839:30167-30186 | Msa1341770:CDS | 30.0% | |
| AGGATGTTCTTCAAATTCAA+AGG | - | tig0004839:30339-30358 | Msa1341770:CDS | 30.0% | |
| TTCTTCAAATTCAAAGGATG+AGG | - | tig0004839:30345-30364 | Msa1341770:CDS | 30.0% | |
| AGAGCATATGTTTGATAAAG+CGG | - | tig0004839:30399-30418 | Msa1341770:CDS | 30.0% | |
| AGAGTTATGTGATGACAAAA+GGG | - | tig0004839:30590-30609 | Msa1341770:CDS | 30.0% | |
| ATCATGATCAACATCACATA+GGG | - | tig0004839:31379-31398 | Msa1341770:intron | 30.0% | |
| GTAACCCTAATTATACCAAG+TGG | + | tig0004839:30174-30193 | None:intergenic | 35.0% | |
| AGAAGAAGAAGAAGAAGATG+TGG | - | tig0004839:30216-30235 | Msa1341770:CDS | 35.0% | |
| GAAGAAGAAGAAGAAGATGT+GGG | - | tig0004839:30217-30236 | Msa1341770:CDS | 35.0% | |
| AAGAAGAAGAAGAAGATGTG+GGG | - | tig0004839:30218-30237 | Msa1341770:CDS | 35.0% | |
| GATTTGATGGAGTTAAGACT+TGG | - | tig0004839:30268-30287 | Msa1341770:CDS | 35.0% | |
| TTCAAATTCAAAGGATGAGG+AGG | - | tig0004839:30348-30367 | Msa1341770:CDS | 35.0% | |
| ATTCTTCTACCAACGAGAAA+GGG | - | tig0004839:30497-30516 | Msa1341770:CDS | 35.0% | |
| AAGATCGAAATGGTAAGATG+TGG | - | tig0004839:30536-30555 | Msa1341770:CDS | 35.0% | |
| ! | CTTTTGTCATCACATAACTC+TGG | + | tig0004839:30591-30610 | None:intergenic | 35.0% |
| CAGAGTTATGTGATGACAAA+AGG | - | tig0004839:30589-30608 | Msa1341770:CDS | 35.0% | |
| GTTTCTTCTCCTTAACGAAA+CGG | + | tig0004839:30621-30640 | None:intergenic | 35.0% | |
| GACACAGATTGTACATAGAT+TGG | - | tig0004839:30692-30711 | Msa1341770:CDS | 35.0% | |
| ACAGATTGTACATAGATTGG+AGG | - | tig0004839:30695-30714 | Msa1341770:CDS | 35.0% | |
| CATCACTATTCATCATATGG+TGG | - | tig0004839:30820-30839 | Msa1341770:CDS | 35.0% | |
| AGGATGAGATATTGTAGAAG+GGG | + | tig0004839:30911-30930 | None:intergenic | 35.0% | |
| GAGGATGAGATATTGTAGAA+GGG | + | tig0004839:30912-30931 | None:intergenic | 35.0% | |
| TGAGGATGAGATATTGTAGA+AGG | + | tig0004839:30913-30932 | None:intergenic | 35.0% | |
| GAAAACGACTGAGACTATTT+GGG | - | tig0004839:31256-31275 | Msa1341770:CDS | 35.0% | |
| AAAACGACTGAGACTATTTG+GGG | - | tig0004839:31257-31276 | Msa1341770:CDS | 35.0% | |
| GATCATGATCAACATCACAT+AGG | - | tig0004839:31378-31397 | Msa1341770:intron | 35.0% | |
| TCATGATCAACATCACATAG+GGG | - | tig0004839:31380-31399 | Msa1341770:intron | 35.0% | |
| GTAACCCTAATTATACCAAG+TGG | + | tig0004839:30174-30193 | None:intergenic | 35.0% | |
| AGAAGAAGAAGAAGAAGATG+TGG | - | tig0004839:30216-30235 | Msa1341770:CDS | 35.0% | |
| GAAGAAGAAGAAGAAGATGT+GGG | - | tig0004839:30217-30236 | Msa1341770:CDS | 35.0% | |
| AAGAAGAAGAAGAAGATGTG+GGG | - | tig0004839:30218-30237 | Msa1341770:CDS | 35.0% | |
| GATTTGATGGAGTTAAGACT+TGG | - | tig0004839:30268-30287 | Msa1341770:CDS | 35.0% | |
| TTCAAATTCAAAGGATGAGG+AGG | - | tig0004839:30348-30367 | Msa1341770:CDS | 35.0% | |
| ATTCTTCTACCAACGAGAAA+GGG | - | tig0004839:30497-30516 | Msa1341770:CDS | 35.0% | |
| AAGATCGAAATGGTAAGATG+TGG | - | tig0004839:30536-30555 | Msa1341770:CDS | 35.0% | |
| ! | CTTTTGTCATCACATAACTC+TGG | + | tig0004839:30591-30610 | None:intergenic | 35.0% |
| CAGAGTTATGTGATGACAAA+AGG | - | tig0004839:30589-30608 | Msa1341770:CDS | 35.0% | |
| GTTTCTTCTCCTTAACGAAA+CGG | + | tig0004839:30621-30640 | None:intergenic | 35.0% | |
| GACACAGATTGTACATAGAT+TGG | - | tig0004839:30692-30711 | Msa1341770:CDS | 35.0% | |
| ACAGATTGTACATAGATTGG+AGG | - | tig0004839:30695-30714 | Msa1341770:CDS | 35.0% | |
| CATCACTATTCATCATATGG+TGG | - | tig0004839:30820-30839 | Msa1341770:CDS | 35.0% | |
| AGGATGAGATATTGTAGAAG+GGG | + | tig0004839:30911-30930 | None:intergenic | 35.0% | |
| GAGGATGAGATATTGTAGAA+GGG | + | tig0004839:30912-30931 | None:intergenic | 35.0% | |
| TGAGGATGAGATATTGTAGA+AGG | + | tig0004839:30913-30932 | None:intergenic | 35.0% | |
| GAAAACGACTGAGACTATTT+GGG | - | tig0004839:31256-31275 | Msa1341770:CDS | 35.0% | |
| AAAACGACTGAGACTATTTG+GGG | - | tig0004839:31257-31276 | Msa1341770:CDS | 35.0% | |
| GATCATGATCAACATCACAT+AGG | - | tig0004839:31378-31397 | Msa1341770:intron | 35.0% | |
| TCATGATCAACATCACATAG+GGG | - | tig0004839:31380-31399 | Msa1341770:intron | 35.0% | |
| AGAAGAAGAAGAAGATGTGG+GGG | - | tig0004839:30219-30238 | Msa1341770:CDS | 40.0% | |
| TGAAGAGGAGGTAGATTTGA+TGG | - | tig0004839:30255-30274 | Msa1341770:CDS | 40.0% | |
| TTGATGGAGTTAAGACTTGG+AGG | - | tig0004839:30271-30290 | Msa1341770:CDS | 40.0% | |
| ! | CGTTGGTAGAAGAATCCAAA+GGG | + | tig0004839:30492-30511 | None:intergenic | 40.0% |
| ! | TCGTTGGTAGAAGAATCCAA+AGG | + | tig0004839:30493-30512 | None:intergenic | 40.0% |
| GATTCTTCTACCAACGAGAA+AGG | - | tig0004839:30496-30515 | Msa1341770:CDS | 40.0% | |
| ATCGAAATGGTAAGATGTGG+CGG | - | tig0004839:30539-30558 | Msa1341770:CDS | 40.0% | |
| GTTATGTGATGACAAAAGGG+TGG | - | tig0004839:30593-30612 | Msa1341770:CDS | 40.0% | |
| AAGGAGAAGAAACTTGATGC+TGG | - | tig0004839:30628-30647 | Msa1341770:CDS | 40.0% | |
| TGATTGGGAGGAAGATAGAA+AGG | + | tig0004839:30802-30821 | None:intergenic | 40.0% | |
| GATGAATAGTGATGATTGGG+AGG | + | tig0004839:30814-30833 | None:intergenic | 40.0% | |
| CACTATTCATCATATGGTGG+TGG | - | tig0004839:30823-30842 | Msa1341770:CDS | 40.0% | |
| !! | TAGGAAGGTGAGAGTATTGA+GGG | + | tig0004839:30873-30892 | None:intergenic | 40.0% |
| !! | TTAGGAAGGTGAGAGTATTG+AGG | + | tig0004839:30874-30893 | None:intergenic | 40.0% |
| CAGCGTAATTAGGATTAGGA+AGG | + | tig0004839:30888-30907 | None:intergenic | 40.0% | |
| ! | TGGTGTGGATCAACATTTTC+AGG | - | tig0004839:31116-31135 | Msa1341770:CDS | 40.0% |
| ! | GGTGTGGATCAACATTTTCA+GGG | - | tig0004839:31117-31136 | Msa1341770:CDS | 40.0% |
| TAGTATTAACATTGCCTCCG+CGG | + | tig0004839:31233-31252 | None:intergenic | 40.0% | |
| GGAGGCAATGTTAATACTAG+CGG | - | tig0004839:31234-31253 | Msa1341770:CDS | 40.0% | |
| GGAAAACGACTGAGACTATT+TGG | - | tig0004839:31255-31274 | Msa1341770:CDS | 40.0% | |
| ! | GAGACTATTTGGGGTTAACA+TGG | - | tig0004839:31266-31285 | Msa1341770:CDS | 40.0% |
| CCAGAAGTTGTTGTAGAAGA+GGG | + | tig0004839:31357-31376 | None:intergenic | 40.0% | |
| CCTCTTCTACAACAACTTCT+GGG | - | tig0004839:31355-31374 | Msa1341770:intron | 40.0% | |
| CTCTTCTACAACAACTTCTG+GGG | - | tig0004839:31356-31375 | Msa1341770:intron | 40.0% | |
| CATGATCAACATCACATAGG+GGG | - | tig0004839:31381-31400 | Msa1341770:intron | 40.0% | |
| AACTTCGCTGCACTTTGATT+TGG | - | tig0004839:31404-31423 | Msa1341770:intron | 40.0% | |
| CTTCTAATTCCCAATATCGC+CGG | - | tig0004839:31430-31449 | Msa1341770:intron | 40.0% | |
| AGAAGAAGAAGAAGATGTGG+GGG | - | tig0004839:30219-30238 | Msa1341770:CDS | 40.0% | |
| TGAAGAGGAGGTAGATTTGA+TGG | - | tig0004839:30255-30274 | Msa1341770:CDS | 40.0% | |
| TTGATGGAGTTAAGACTTGG+AGG | - | tig0004839:30271-30290 | Msa1341770:CDS | 40.0% | |
| ! | CGTTGGTAGAAGAATCCAAA+GGG | + | tig0004839:30492-30511 | None:intergenic | 40.0% |
| ! | TCGTTGGTAGAAGAATCCAA+AGG | + | tig0004839:30493-30512 | None:intergenic | 40.0% |
| GATTCTTCTACCAACGAGAA+AGG | - | tig0004839:30496-30515 | Msa1341770:CDS | 40.0% | |
| ATCGAAATGGTAAGATGTGG+CGG | - | tig0004839:30539-30558 | Msa1341770:CDS | 40.0% | |
| GTTATGTGATGACAAAAGGG+TGG | - | tig0004839:30593-30612 | Msa1341770:CDS | 40.0% | |
| AAGGAGAAGAAACTTGATGC+TGG | - | tig0004839:30628-30647 | Msa1341770:CDS | 40.0% | |
| TGATTGGGAGGAAGATAGAA+AGG | + | tig0004839:30802-30821 | None:intergenic | 40.0% | |
| GATGAATAGTGATGATTGGG+AGG | + | tig0004839:30814-30833 | None:intergenic | 40.0% | |
| CACTATTCATCATATGGTGG+TGG | - | tig0004839:30823-30842 | Msa1341770:CDS | 40.0% | |
| !! | TAGGAAGGTGAGAGTATTGA+GGG | + | tig0004839:30873-30892 | None:intergenic | 40.0% |
| !! | TTAGGAAGGTGAGAGTATTG+AGG | + | tig0004839:30874-30893 | None:intergenic | 40.0% |
| CAGCGTAATTAGGATTAGGA+AGG | + | tig0004839:30888-30907 | None:intergenic | 40.0% | |
| ! | TGGTGTGGATCAACATTTTC+AGG | - | tig0004839:31116-31135 | Msa1341770:CDS | 40.0% |
| ! | GGTGTGGATCAACATTTTCA+GGG | - | tig0004839:31117-31136 | Msa1341770:CDS | 40.0% |
| TAGTATTAACATTGCCTCCG+CGG | + | tig0004839:31233-31252 | None:intergenic | 40.0% | |
| GGAGGCAATGTTAATACTAG+CGG | - | tig0004839:31234-31253 | Msa1341770:CDS | 40.0% | |
| GGAAAACGACTGAGACTATT+TGG | - | tig0004839:31255-31274 | Msa1341770:CDS | 40.0% | |
| ! | GAGACTATTTGGGGTTAACA+TGG | - | tig0004839:31266-31285 | Msa1341770:CDS | 40.0% |
| CCAGAAGTTGTTGTAGAAGA+GGG | + | tig0004839:31357-31376 | None:intergenic | 40.0% | |
| CCTCTTCTACAACAACTTCT+GGG | - | tig0004839:31355-31374 | Msa1341770:intron | 40.0% | |
| CTCTTCTACAACAACTTCTG+GGG | - | tig0004839:31356-31375 | Msa1341770:intron | 40.0% | |
| CATGATCAACATCACATAGG+GGG | - | tig0004839:31381-31400 | Msa1341770:intron | 40.0% | |
| AACTTCGCTGCACTTTGATT+TGG | - | tig0004839:31404-31423 | Msa1341770:intron | 40.0% | |
| CTTCTAATTCCCAATATCGC+CGG | - | tig0004839:31430-31449 | Msa1341770:intron | 40.0% | |
| AAGAAGAAGATGTGGGGGTT+GGG | - | tig0004839:30224-30243 | Msa1341770:CDS | 45.0% | |
| GGTTGGGAAGTTGAATGAAG+AGG | - | tig0004839:30240-30259 | Msa1341770:CDS | 45.0% | |
| TGGGAAGTTGAATGAAGAGG+AGG | - | tig0004839:30243-30262 | Msa1341770:CDS | 45.0% | |
| ATGGAGTTAAGACTTGGAGG+AGG | - | tig0004839:30274-30293 | Msa1341770:CDS | 45.0% | |
| TGGAGTTAAGACTTGGAGGA+GGG | - | tig0004839:30275-30294 | Msa1341770:CDS | 45.0% | |
| AAGGGCAATGACGAAGGATT+AGG | - | tig0004839:30310-30329 | Msa1341770:CDS | 45.0% | |
| GACGAAGGATTAGGAGGAAT+AGG | - | tig0004839:30319-30338 | Msa1341770:CDS | 45.0% | |
| GGCGGTTCAGGTATTCATAT+TGG | - | tig0004839:30557-30576 | Msa1341770:CDS | 45.0% | |
| GACATTGTATCATTCCACCG+TGG | - | tig0004839:30652-30671 | Msa1341770:CDS | 45.0% | |
| TGTACATAGATTGGAGGCCA+AGG | - | tig0004839:30701-30720 | Msa1341770:CDS | 45.0% | |
| GTACATAGATTGGAGGCCAA+GGG | - | tig0004839:30702-30721 | Msa1341770:CDS | 45.0% | |
| !! | AGGAAGGTGAGAGTATTGAG+GGG | + | tig0004839:30872-30891 | None:intergenic | 45.0% |
| TTAACAAGGTGATCAGCAGC+AGG | + | tig0004839:31009-31028 | None:intergenic | 45.0% | |
| GAGGAGGTGAGATAATAGAG+GGG | + | tig0004839:31060-31079 | None:intergenic | 45.0% | |
| CGAGGAGGTGAGATAATAGA+GGG | + | tig0004839:31061-31080 | None:intergenic | 45.0% | |
| !! | TCAACATTTTCAGGGATCCG+TGG | - | tig0004839:31125-31144 | Msa1341770:CDS | 45.0% |
| GAAGTTGTTGTAGAAGAGGG+TGG | + | tig0004839:31354-31373 | None:intergenic | 45.0% | |
| CCCTCTTCTACAACAACTTC+TGG | - | tig0004839:31354-31373 | Msa1341770:intron | 45.0% | |
| CCCAGAAGTTGTTGTAGAAG+AGG | + | tig0004839:31358-31377 | None:intergenic | 45.0% | |
| CGGCGATATTGGGAATTAGA+AGG | + | tig0004839:31432-31451 | None:intergenic | 45.0% | |
| AAGAAGAAGATGTGGGGGTT+GGG | - | tig0004839:30224-30243 | Msa1341770:CDS | 45.0% | |
| GGTTGGGAAGTTGAATGAAG+AGG | - | tig0004839:30240-30259 | Msa1341770:CDS | 45.0% | |
| TGGGAAGTTGAATGAAGAGG+AGG | - | tig0004839:30243-30262 | Msa1341770:CDS | 45.0% | |
| ATGGAGTTAAGACTTGGAGG+AGG | - | tig0004839:30274-30293 | Msa1341770:CDS | 45.0% | |
| TGGAGTTAAGACTTGGAGGA+GGG | - | tig0004839:30275-30294 | Msa1341770:CDS | 45.0% | |
| AAGGGCAATGACGAAGGATT+AGG | - | tig0004839:30310-30329 | Msa1341770:CDS | 45.0% | |
| GACGAAGGATTAGGAGGAAT+AGG | - | tig0004839:30319-30338 | Msa1341770:CDS | 45.0% | |
| GGCGGTTCAGGTATTCATAT+TGG | - | tig0004839:30557-30576 | Msa1341770:CDS | 45.0% | |
| GACATTGTATCATTCCACCG+TGG | - | tig0004839:30652-30671 | Msa1341770:CDS | 45.0% | |
| TGTACATAGATTGGAGGCCA+AGG | - | tig0004839:30701-30720 | Msa1341770:CDS | 45.0% | |
| GTACATAGATTGGAGGCCAA+GGG | - | tig0004839:30702-30721 | Msa1341770:CDS | 45.0% | |
| !! | AGGAAGGTGAGAGTATTGAG+GGG | + | tig0004839:30872-30891 | None:intergenic | 45.0% |
| TTAACAAGGTGATCAGCAGC+AGG | + | tig0004839:31009-31028 | None:intergenic | 45.0% | |
| GAGGAGGTGAGATAATAGAG+GGG | + | tig0004839:31060-31079 | None:intergenic | 45.0% | |
| CGAGGAGGTGAGATAATAGA+GGG | + | tig0004839:31061-31080 | None:intergenic | 45.0% | |
| !! | TCAACATTTTCAGGGATCCG+TGG | - | tig0004839:31125-31144 | Msa1341770:CDS | 45.0% |
| GAAGTTGTTGTAGAAGAGGG+TGG | + | tig0004839:31354-31373 | None:intergenic | 45.0% | |
| CCCTCTTCTACAACAACTTC+TGG | - | tig0004839:31354-31373 | Msa1341770:intron | 45.0% | |
| CCCAGAAGTTGTTGTAGAAG+AGG | + | tig0004839:31358-31377 | None:intergenic | 45.0% | |
| CGGCGATATTGGGAATTAGA+AGG | + | tig0004839:31432-31451 | None:intergenic | 45.0% | |
| !! | TATTATTATTATTATTAACA+AGG | + | tig0004839:31023-31042 | None:intergenic | 5.0% |
| !! | TATTATTATTATTATTAACA+AGG | + | tig0004839:31023-31042 | None:intergenic | 5.0% |
| GAAGAAGAAGATGTGGGGGT+TGG | - | tig0004839:30223-30242 | Msa1341770:CDS | 50.0% | |
| GGAGTTAAGACTTGGAGGAG+GGG | - | tig0004839:30276-30295 | Msa1341770:CDS | 50.0% | |
| GAGTTAAGACTTGGAGGAGG+GGG | - | tig0004839:30277-30296 | Msa1341770:CDS | 50.0% | |
| AAGAGCAAGGGCAATGACGA+AGG | - | tig0004839:30304-30323 | Msa1341770:CDS | 50.0% | |
| GGCAATGACGAAGGATTAGG+AGG | - | tig0004839:30313-30332 | Msa1341770:CDS | 50.0% | |
| TTCAGCTTCCCTACGTCACT+AGG | + | tig0004839:30430-30449 | None:intergenic | 50.0% | |
| !! | TACTTCTCTGCGTGCTGCTT+TGG | + | tig0004839:30466-30485 | None:intergenic | 50.0% |
| !! | CGCAGAGAAGTACTTCCCTT+TGG | - | tig0004839:30474-30493 | Msa1341770:CDS | 50.0% |
| TAGGAGAAGCCCTTTCTCGT+TGG | + | tig0004839:30509-30528 | None:intergenic | 50.0% | |
| ATGGTAAGATGTGGCGGTTC+AGG | - | tig0004839:30545-30564 | Msa1341770:CDS | 50.0% | |
| TGTGCAATTCAGCACGTCCA+CGG | + | tig0004839:30672-30691 | None:intergenic | 50.0% | |
| GATATTGAGGGATGAGGTGG+TGG | + | tig0004839:30762-30781 | None:intergenic | 50.0% | |
| GAGGATATTGAGGGATGAGG+TGG | + | tig0004839:30765-30784 | None:intergenic | 50.0% | |
| GAGGAGGATATTGAGGGATG+AGG | + | tig0004839:30768-30787 | None:intergenic | 50.0% | |
| GAGGAGGAGGAGGATATTGA+GGG | + | tig0004839:30774-30793 | None:intergenic | 50.0% | |
| AGATAGAAAGGCAGTGGAGG+AGG | + | tig0004839:30790-30809 | None:intergenic | 50.0% | |
| GGAAGATAGAAAGGCAGTGG+AGG | + | tig0004839:30793-30812 | None:intergenic | 50.0% | |
| GGAGGAAGATAGAAAGGCAG+TGG | + | tig0004839:30796-30815 | None:intergenic | 50.0% | |
| !! | AAGGTGAGAGTATTGAGGGG+AGG | + | tig0004839:30869-30888 | None:intergenic | 50.0% |
| GGGGCAGCGTAATTAGGATT+AGG | + | tig0004839:30892-30911 | None:intergenic | 50.0% | |
| GTAGAAGGGGCAGCGTAATT+AGG | + | tig0004839:30898-30917 | None:intergenic | 50.0% | |
| GCGAGGAGGTGAGATAATAG+AGG | + | tig0004839:31062-31081 | None:intergenic | 50.0% | |
| !! | GTGGTTGATGGTGGCGTAAT+TGG | + | tig0004839:31084-31103 | None:intergenic | 50.0% |
| TTGTTGATGCCCTTGCACCA+CGG | + | tig0004839:31145-31164 | None:intergenic | 50.0% | |
| TTCTTCTTCAGCACCACCAC+AGG | - | tig0004839:31305-31324 | Msa1341770:CDS | 50.0% | |
| GAGGGTGGAAGTTGACGATT+AGG | + | tig0004839:31339-31358 | None:intergenic | 50.0% | |
| GAAGAAGAAGATGTGGGGGT+TGG | - | tig0004839:30223-30242 | Msa1341770:CDS | 50.0% | |
| GGAGTTAAGACTTGGAGGAG+GGG | - | tig0004839:30276-30295 | Msa1341770:CDS | 50.0% | |
| GAGTTAAGACTTGGAGGAGG+GGG | - | tig0004839:30277-30296 | Msa1341770:CDS | 50.0% | |
| AAGAGCAAGGGCAATGACGA+AGG | - | tig0004839:30304-30323 | Msa1341770:CDS | 50.0% | |
| GGCAATGACGAAGGATTAGG+AGG | - | tig0004839:30313-30332 | Msa1341770:CDS | 50.0% | |
| TTCAGCTTCCCTACGTCACT+AGG | + | tig0004839:30430-30449 | None:intergenic | 50.0% | |
| !! | TACTTCTCTGCGTGCTGCTT+TGG | + | tig0004839:30466-30485 | None:intergenic | 50.0% |
| !! | CGCAGAGAAGTACTTCCCTT+TGG | - | tig0004839:30474-30493 | Msa1341770:CDS | 50.0% |
| TAGGAGAAGCCCTTTCTCGT+TGG | + | tig0004839:30509-30528 | None:intergenic | 50.0% | |
| ATGGTAAGATGTGGCGGTTC+AGG | - | tig0004839:30545-30564 | Msa1341770:CDS | 50.0% | |
| TGTGCAATTCAGCACGTCCA+CGG | + | tig0004839:30672-30691 | None:intergenic | 50.0% | |
| GATATTGAGGGATGAGGTGG+TGG | + | tig0004839:30762-30781 | None:intergenic | 50.0% | |
| GAGGATATTGAGGGATGAGG+TGG | + | tig0004839:30765-30784 | None:intergenic | 50.0% | |
| GAGGAGGATATTGAGGGATG+AGG | + | tig0004839:30768-30787 | None:intergenic | 50.0% | |
| GAGGAGGAGGAGGATATTGA+GGG | + | tig0004839:30774-30793 | None:intergenic | 50.0% | |
| AGATAGAAAGGCAGTGGAGG+AGG | + | tig0004839:30790-30809 | None:intergenic | 50.0% | |
| GGAAGATAGAAAGGCAGTGG+AGG | + | tig0004839:30793-30812 | None:intergenic | 50.0% | |
| GGAGGAAGATAGAAAGGCAG+TGG | + | tig0004839:30796-30815 | None:intergenic | 50.0% | |
| !! | AAGGTGAGAGTATTGAGGGG+AGG | + | tig0004839:30869-30888 | None:intergenic | 50.0% |
| GGGGCAGCGTAATTAGGATT+AGG | + | tig0004839:30892-30911 | None:intergenic | 50.0% | |
| GTAGAAGGGGCAGCGTAATT+AGG | + | tig0004839:30898-30917 | None:intergenic | 50.0% | |
| GCGAGGAGGTGAGATAATAG+AGG | + | tig0004839:31062-31081 | None:intergenic | 50.0% | |
| !! | GTGGTTGATGGTGGCGTAAT+TGG | + | tig0004839:31084-31103 | None:intergenic | 50.0% |
| TTGTTGATGCCCTTGCACCA+CGG | + | tig0004839:31145-31164 | None:intergenic | 50.0% | |
| TTCTTCTTCAGCACCACCAC+AGG | - | tig0004839:31305-31324 | Msa1341770:CDS | 50.0% | |
| GAGGGTGGAAGTTGACGATT+AGG | + | tig0004839:31339-31358 | None:intergenic | 50.0% | |
| AGGGTTACAGACGTCACAGC+TGG | - | tig0004839:30186-30205 | Msa1341770:CDS | 55.0% | |
| CGGTGACACCTAGTGACGTA+GGG | - | tig0004839:30419-30438 | Msa1341770:CDS | 55.0% | |
| AGGGTGGAGCCGTTTCGTTA+AGG | - | tig0004839:30609-30628 | Msa1341770:CDS | 55.0% | |
| !! | GAGTACTGAGAGTGTGCCCT+TGG | + | tig0004839:30721-30740 | None:intergenic | 55.0% |
| GGAGGAGGAGGAGGATATTG+AGG | + | tig0004839:30775-30794 | None:intergenic | 55.0% | |
| TAGAAAGGCAGTGGAGGAGG+AGG | + | tig0004839:30787-30806 | None:intergenic | 55.0% | |
| !! | TGATGGTGGCGTAATTGGCG+AGG | + | tig0004839:31079-31098 | None:intergenic | 55.0% |
| TTTCAGGGATCCGTGGTGCA+AGG | - | tig0004839:31132-31151 | Msa1341770:CDS | 55.0% | |
| TTCAGGGATCCGTGGTGCAA+GGG | - | tig0004839:31133-31152 | Msa1341770:CDS | 55.0% | |
| CCAGTTGCACATCATCACCG+CGG | - | tig0004839:31213-31232 | Msa1341770:CDS | 55.0% | |
| TTCTTCAGCACCACCACAGG+CGG | - | tig0004839:31308-31327 | Msa1341770:CDS | 55.0% | |
| !! | TCAGTGGTGCCGGCGATATT+GGG | + | tig0004839:31442-31461 | None:intergenic | 55.0% |
| AGGGTTACAGACGTCACAGC+TGG | - | tig0004839:30186-30205 | Msa1341770:CDS | 55.0% | |
| CGGTGACACCTAGTGACGTA+GGG | - | tig0004839:30419-30438 | Msa1341770:CDS | 55.0% | |
| AGGGTGGAGCCGTTTCGTTA+AGG | - | tig0004839:30609-30628 | Msa1341770:CDS | 55.0% | |
| !! | GAGTACTGAGAGTGTGCCCT+TGG | + | tig0004839:30721-30740 | None:intergenic | 55.0% |
| GGAGGAGGAGGAGGATATTG+AGG | + | tig0004839:30775-30794 | None:intergenic | 55.0% | |
| TAGAAAGGCAGTGGAGGAGG+AGG | + | tig0004839:30787-30806 | None:intergenic | 55.0% | |
| !! | TGATGGTGGCGTAATTGGCG+AGG | + | tig0004839:31079-31098 | None:intergenic | 55.0% |
| TTTCAGGGATCCGTGGTGCA+AGG | - | tig0004839:31132-31151 | Msa1341770:CDS | 55.0% | |
| TTCAGGGATCCGTGGTGCAA+GGG | - | tig0004839:31133-31152 | Msa1341770:CDS | 55.0% | |
| CCAGTTGCACATCATCACCG+CGG | - | tig0004839:31213-31232 | Msa1341770:CDS | 55.0% | |
| TTCTTCAGCACCACCACAGG+CGG | - | tig0004839:31308-31327 | Msa1341770:CDS | 55.0% | |
| !! | TCAGTGGTGCCGGCGATATT+GGG | + | tig0004839:31442-31461 | None:intergenic | 55.0% |
| AGGAGGGGGAAGCAAGAGCA+AGG | - | tig0004839:30291-30310 | Msa1341770:CDS | 60.0% | |
| GGAGGGGGAAGCAAGAGCAA+GGG | - | tig0004839:30292-30311 | Msa1341770:CDS | 60.0% | |
| GCGGTGACACCTAGTGACGT+AGG | - | tig0004839:30418-30437 | Msa1341770:CDS | 60.0% | |
| GCAATTCAGCACGTCCACGG+TGG | + | tig0004839:30669-30688 | None:intergenic | 60.0% | |
| AAAGGCAGTGGAGGAGGAGG+AGG | + | tig0004839:30784-30803 | None:intergenic | 60.0% | |
| GGTGATCAGCAGCAGGAGCA+GGG | + | tig0004839:31002-31021 | None:intergenic | 60.0% | |
| AGGTGATCAGCAGCAGGAGC+AGG | + | tig0004839:31003-31022 | None:intergenic | 60.0% | |
| ! | TGGTGGCGTAATTGGCGAGG+AGG | + | tig0004839:31076-31095 | None:intergenic | 60.0% |
| !! | CCAGCTGTGGTGGTTGATGG+TGG | + | tig0004839:31093-31112 | None:intergenic | 60.0% |
| CCACCATCAACCACCACAGC+TGG | - | tig0004839:31090-31109 | Msa1341770:CDS | 60.0% | |
| CCACCAGCTGTGGTGGTTGA+TGG | + | tig0004839:31096-31115 | None:intergenic | 60.0% | |
| CCATCAACCACCACAGCTGG+TGG | - | tig0004839:31093-31112 | Msa1341770:CDS | 60.0% | |
| TCAACCACCACAGCTGGTGG+TGG | - | tig0004839:31096-31115 | Msa1341770:CDS | 60.0% | |
| ATCCACACCACCACCAGCTG+TGG | + | tig0004839:31106-31125 | None:intergenic | 60.0% | |
| ! | CCGCGGTGATGATGTGCAAC+TGG | + | tig0004839:31216-31235 | None:intergenic | 60.0% |
| GTTGCACATCATCACCGCGG+AGG | - | tig0004839:31216-31235 | Msa1341770:CDS | 60.0% | |
| ! | TTAGGCATTGCCGCCTGTGG+TGG | + | tig0004839:31321-31340 | None:intergenic | 60.0% |
| ! | CGATTAGGCATTGCCGCCTG+TGG | + | tig0004839:31324-31343 | None:intergenic | 60.0% |
| AGGAGGGGGAAGCAAGAGCA+AGG | - | tig0004839:30291-30310 | Msa1341770:CDS | 60.0% | |
| GGAGGGGGAAGCAAGAGCAA+GGG | - | tig0004839:30292-30311 | Msa1341770:CDS | 60.0% | |
| GCGGTGACACCTAGTGACGT+AGG | - | tig0004839:30418-30437 | Msa1341770:CDS | 60.0% | |
| GCAATTCAGCACGTCCACGG+TGG | + | tig0004839:30669-30688 | None:intergenic | 60.0% | |
| AAAGGCAGTGGAGGAGGAGG+AGG | + | tig0004839:30784-30803 | None:intergenic | 60.0% | |
| GGTGATCAGCAGCAGGAGCA+GGG | + | tig0004839:31002-31021 | None:intergenic | 60.0% | |
| AGGTGATCAGCAGCAGGAGC+AGG | + | tig0004839:31003-31022 | None:intergenic | 60.0% | |
| ! | TGGTGGCGTAATTGGCGAGG+AGG | + | tig0004839:31076-31095 | None:intergenic | 60.0% |
| !! | CCAGCTGTGGTGGTTGATGG+TGG | + | tig0004839:31093-31112 | None:intergenic | 60.0% |
| CCACCATCAACCACCACAGC+TGG | - | tig0004839:31090-31109 | Msa1341770:CDS | 60.0% | |
| CCACCAGCTGTGGTGGTTGA+TGG | + | tig0004839:31096-31115 | None:intergenic | 60.0% | |
| CCATCAACCACCACAGCTGG+TGG | - | tig0004839:31093-31112 | Msa1341770:CDS | 60.0% | |
| TCAACCACCACAGCTGGTGG+TGG | - | tig0004839:31096-31115 | Msa1341770:CDS | 60.0% | |
| ATCCACACCACCACCAGCTG+TGG | + | tig0004839:31106-31125 | None:intergenic | 60.0% | |
| ! | CCGCGGTGATGATGTGCAAC+TGG | + | tig0004839:31216-31235 | None:intergenic | 60.0% |
| GTTGCACATCATCACCGCGG+AGG | - | tig0004839:31216-31235 | Msa1341770:CDS | 60.0% | |
| ! | TTAGGCATTGCCGCCTGTGG+TGG | + | tig0004839:31321-31340 | None:intergenic | 60.0% |
| ! | CGATTAGGCATTGCCGCCTG+TGG | + | tig0004839:31324-31343 | None:intergenic | 60.0% |
| GATCAGCAGCAGGAGCAGGG+TGG | + | tig0004839:30999-31018 | None:intergenic | 65.0% | |
| CACACCACCACCAGCTGTGG+TGG | + | tig0004839:31103-31122 | None:intergenic | 65.0% | |
| !! | CACCACAGCTGGTGGTGGTG+TGG | - | tig0004839:31101-31120 | Msa1341770:CDS | 65.0% |
| GATCAGCAGCAGGAGCAGGG+TGG | + | tig0004839:30999-31018 | None:intergenic | 65.0% | |
| CACACCACCACCAGCTGTGG+TGG | + | tig0004839:31103-31122 | None:intergenic | 65.0% | |
| !! | CACCACAGCTGGTGGTGGTG+TGG | - | tig0004839:31101-31120 | Msa1341770:CDS | 65.0% |
| CAGCAGCAGGAGCAGGGTGG+TGG | + | tig0004839:30996-31015 | None:intergenic | 70.0% | |
| CAGCAGCAGGAGCAGGGTGG+TGG | + | tig0004839:30996-31015 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0004839 | gene | 30075 | 31461 | 30075 | ID=Msa1341770;Name=Msa1341770 |
| tig0004839 | mRNA | 30075 | 31461 | 30075 | ID=Msa1341770-mRNA-1;Parent=Msa1341770;Name=Msa1341770-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|0.5|1|1|2|0|424 |
| tig0004839 | exon | 31453 | 31461 | 31453 | ID=Msa1341770-mRNA-1:exon:3307;Parent=Msa1341770-mRNA-1 |
| tig0004839 | exon | 30075 | 31340 | 30075 | ID=Msa1341770-mRNA-1:exon:3306;Parent=Msa1341770-mRNA-1 |
| tig0004839 | CDS | 31453 | 31461 | 31453 | ID=Msa1341770-mRNA-1:cds;Parent=Msa1341770-mRNA-1 |
| tig0004839 | CDS | 30075 | 31340 | 30075 | ID=Msa1341770-mRNA-1:cds;Parent=Msa1341770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
