Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1342130 | XP_003597365.1 | 92.371 | 367 | 28 | 0 | 1 | 367 | 274 | 640 | 0.0 | 713 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1342130 | sp|Q9XE58|SCL14_ARATH | 56.989 | 372 | 153 | 4 | 1 | 367 | 398 | 767 | 4.06e-157 | 462 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1342130 | G7IHQ3 | 92.371 | 367 | 28 | 0 | 1 | 367 | 274 | 640 | 0.0 | 713 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1342130 | TF | GRAS |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1342130 | MtrunA17_Chr2g0328341 | 92.371 | 367 | 28 | 0 | 1 | 367 | 274 | 640 | 0.0 | 713 |
| Msa1342130 | MtrunA17_Chr2g0328381 | 89.101 | 367 | 40 | 0 | 1 | 367 | 277 | 643 | 0.0 | 697 |
| Msa1342130 | MtrunA17_Chr2g0328361 | 83.379 | 367 | 36 | 1 | 1 | 367 | 276 | 617 | 0.0 | 631 |
| Msa1342130 | MtrunA17_Chr4g0031721 | 63.612 | 371 | 129 | 3 | 1 | 367 | 318 | 686 | 4.10e-177 | 508 |
| Msa1342130 | MtrunA17_Chr2g0328371 | 90.476 | 252 | 24 | 0 | 69 | 320 | 1 | 252 | 3.41e-173 | 482 |
| Msa1342130 | MtrunA17_Chr2g0328391 | 55.882 | 374 | 155 | 6 | 1 | 367 | 301 | 671 | 1.25e-148 | 435 |
| Msa1342130 | MtrunA17_Chr4g0031711 | 53.333 | 375 | 165 | 5 | 1 | 367 | 363 | 735 | 5.24e-146 | 430 |
| Msa1342130 | MtrunA17_Chr7g0238891 | 51.482 | 371 | 174 | 3 | 1 | 367 | 374 | 742 | 1.13e-143 | 424 |
| Msa1342130 | MtrunA17_Chr4g0031741 | 52.846 | 369 | 166 | 4 | 3 | 367 | 288 | 652 | 4.58e-143 | 420 |
| Msa1342130 | MtrunA17_Chr4g0031701 | 51.733 | 375 | 171 | 5 | 1 | 367 | 256 | 628 | 2.73e-141 | 415 |
| Msa1342130 | MtrunA17_Chr4g0031731 | 50.933 | 375 | 174 | 5 | 1 | 367 | 256 | 628 | 2.46e-138 | 407 |
| Msa1342130 | MtrunA17_Chr2g0328431 | 49.864 | 369 | 176 | 5 | 3 | 367 | 293 | 656 | 1.07e-131 | 391 |
| Msa1342130 | MtrunA17_Chr2g0328411 | 48.774 | 367 | 179 | 5 | 3 | 365 | 293 | 654 | 2.53e-130 | 389 |
| Msa1342130 | MtrunA17_Chr2g0328401 | 48.266 | 346 | 170 | 4 | 3 | 344 | 294 | 634 | 8.50e-121 | 362 |
| Msa1342130 | MtrunA17_Chr5g0447691 | 30.790 | 367 | 245 | 4 | 3 | 364 | 181 | 543 | 1.58e-61 | 206 |
| Msa1342130 | MtrunA17_Chr2g0290241 | 30.245 | 367 | 248 | 4 | 3 | 364 | 61 | 424 | 4.01e-60 | 199 |
| Msa1342130 | MtrunA17_Chr3g0101141 | 31.452 | 372 | 236 | 7 | 3 | 364 | 179 | 541 | 5.93e-59 | 199 |
| Msa1342130 | MtrunA17_Chr4g0076091 | 29.730 | 370 | 252 | 4 | 1 | 365 | 177 | 543 | 7.35e-58 | 196 |
| Msa1342130 | MtrunA17_Chr7g0224271 | 31.332 | 383 | 232 | 6 | 1 | 364 | 302 | 672 | 1.53e-56 | 195 |
| Msa1342130 | MtrunA17_Chr3g0125811 | 29.781 | 366 | 250 | 3 | 3 | 364 | 207 | 569 | 1.94e-55 | 191 |
| Msa1342130 | MtrunA17_Chr5g0445331 | 30.645 | 372 | 243 | 8 | 3 | 364 | 165 | 531 | 3.64e-55 | 189 |
| Msa1342130 | MtrunA17_Chr2g0319091 | 30.328 | 366 | 248 | 3 | 3 | 364 | 216 | 578 | 5.56e-55 | 189 |
| Msa1342130 | MtrunA17_Chr1g0159461 | 29.508 | 366 | 251 | 3 | 3 | 364 | 229 | 591 | 6.22e-54 | 187 |
| Msa1342130 | MtrunA17_Chr8g0376381 | 29.268 | 369 | 238 | 7 | 1 | 364 | 171 | 521 | 2.37e-49 | 174 |
| Msa1342130 | MtrunA17_Chr8g0357601 | 28.460 | 383 | 246 | 8 | 1 | 367 | 184 | 554 | 2.01e-48 | 171 |
| Msa1342130 | MtrunA17_Chr4g0057891 | 27.467 | 375 | 251 | 8 | 3 | 364 | 153 | 519 | 3.91e-48 | 170 |
| Msa1342130 | MtrunA17_Chr7g0245601 | 31.522 | 368 | 232 | 9 | 3 | 366 | 442 | 793 | 5.31e-48 | 173 |
| Msa1342130 | MtrunA17_Chr2g0306641 | 31.806 | 371 | 235 | 8 | 1 | 364 | 127 | 486 | 1.94e-47 | 168 |
| Msa1342130 | MtrunA17_Chr3g0110971 | 30.000 | 380 | 236 | 8 | 1 | 364 | 221 | 586 | 5.07e-47 | 168 |
| Msa1342130 | MtrunA17_Chr4g0057291 | 26.064 | 376 | 258 | 8 | 3 | 366 | 296 | 663 | 5.97e-45 | 164 |
| Msa1342130 | MtrunA17_Chr5g0396491 | 26.005 | 423 | 247 | 9 | 3 | 364 | 60 | 477 | 2.57e-43 | 156 |
| Msa1342130 | MtrunA17_Chr3g0085681 | 26.442 | 416 | 243 | 8 | 3 | 364 | 29 | 435 | 1.49e-42 | 153 |
| Msa1342130 | MtrunA17_Chr4g0038851 | 24.764 | 424 | 254 | 7 | 1 | 364 | 50 | 468 | 5.69e-40 | 147 |
| Msa1342130 | MtrunA17_Chr4g0038761 | 28.877 | 374 | 240 | 10 | 3 | 367 | 88 | 444 | 2.70e-37 | 139 |
| Msa1342130 | MtrunA17_Chr4g0039661 | 27.151 | 372 | 245 | 9 | 4 | 364 | 198 | 554 | 4.29e-35 | 135 |
| Msa1342130 | MtrunA17_Chr1g0183641 | 28.649 | 370 | 242 | 11 | 1 | 365 | 125 | 477 | 5.70e-34 | 131 |
| Msa1342130 | MtrunA17_Chr2g0294461 | 25.397 | 378 | 263 | 7 | 1 | 364 | 212 | 584 | 8.38e-34 | 131 |
| Msa1342130 | MtrunA17_Chr5g0401131 | 25.000 | 380 | 261 | 10 | 4 | 366 | 119 | 491 | 3.48e-32 | 126 |
| Msa1342130 | MtrunA17_Chr2g0294471 | 24.202 | 376 | 267 | 7 | 1 | 364 | 206 | 575 | 2.18e-31 | 124 |
| Msa1342130 | MtrunA17_Chr1g0200401 | 27.595 | 395 | 237 | 15 | 1 | 364 | 82 | 458 | 2.46e-30 | 120 |
| Msa1342130 | MtrunA17_Chr7g0236851 | 27.778 | 288 | 195 | 6 | 84 | 364 | 375 | 656 | 1.38e-27 | 114 |
| Msa1342130 | MtrunA17_Chr7g0270031 | 26.260 | 377 | 249 | 12 | 2 | 364 | 192 | 553 | 2.37e-27 | 113 |
| Msa1342130 | MtrunA17_Chr3g0085361 | 25.490 | 357 | 201 | 9 | 62 | 364 | 4 | 349 | 1.74e-26 | 108 |
| Msa1342130 | MtrunA17_Chr6g0468561 | 25.613 | 367 | 248 | 9 | 10 | 364 | 308 | 661 | 9.63e-26 | 108 |
| Msa1342130 | MtrunA17_Chr3g0114841 | 24.603 | 378 | 243 | 12 | 15 | 365 | 138 | 500 | 1.18e-24 | 105 |
| Msa1342130 | MtrunA17_Chr2g0329591 | 26.425 | 386 | 251 | 11 | 3 | 366 | 78 | 452 | 1.37e-24 | 104 |
| Msa1342130 | MtrunA17_Chr5g0424131 | 25.195 | 385 | 260 | 12 | 1 | 365 | 123 | 499 | 2.14e-23 | 101 |
| Msa1342130 | MtrunA17_Chr1g0194621 | 24.093 | 386 | 255 | 14 | 1 | 364 | 148 | 517 | 3.55e-23 | 100 |
| Msa1342130 | MtrunA17_Chr4g0053901 | 22.947 | 414 | 264 | 11 | 3 | 367 | 63 | 470 | 4.99e-23 | 100 |
| Msa1342130 | MtrunA17_Chr5g0401421 | 21.718 | 419 | 265 | 10 | 3 | 367 | 39 | 448 | 1.28e-22 | 98.6 |
| Msa1342130 | MtrunA17_Chr8g0383981 | 23.684 | 380 | 255 | 14 | 1 | 367 | 141 | 498 | 1.69e-18 | 86.7 |
| Msa1342130 | MtrunA17_Chr4g0012071 | 23.450 | 371 | 253 | 12 | 4 | 364 | 201 | 550 | 1.12e-17 | 84.3 |
| Msa1342130 | MtrunA17_Chr7g0230771 | 23.733 | 375 | 250 | 11 | 3 | 364 | 379 | 730 | 2.75e-17 | 83.6 |
| Msa1342130 | MtrunA17_Chr7g0230731 | 23.733 | 375 | 250 | 11 | 3 | 364 | 376 | 727 | 2.05e-16 | 80.9 |
| Msa1342130 | MtrunA17_Chr8g0344101 | 22.613 | 398 | 247 | 15 | 3 | 364 | 227 | 599 | 6.36e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1342130 | AT1G07530.1 | 56.989 | 372 | 153 | 4 | 1 | 367 | 398 | 767 | 4.13e-158 | 462 |
| Msa1342130 | AT2G29060.2 | 54.324 | 370 | 162 | 3 | 3 | 366 | 288 | 656 | 7.74e-151 | 441 |
| Msa1342130 | AT2G29060.1 | 54.324 | 370 | 162 | 3 | 3 | 366 | 325 | 693 | 3.76e-150 | 440 |
| Msa1342130 | AT1G07520.2 | 52.394 | 376 | 168 | 6 | 2 | 367 | 157 | 531 | 9.39e-140 | 408 |
| Msa1342130 | AT1G07520.4 | 52.394 | 376 | 168 | 6 | 2 | 367 | 157 | 531 | 9.39e-140 | 408 |
| Msa1342130 | AT1G07520.1 | 52.394 | 376 | 168 | 6 | 2 | 367 | 321 | 695 | 8.14e-138 | 408 |
| Msa1342130 | AT1G07520.3 | 52.394 | 376 | 168 | 6 | 2 | 367 | 322 | 696 | 8.84e-138 | 408 |
| Msa1342130 | AT2G29065.1 | 53.989 | 376 | 161 | 7 | 3 | 367 | 256 | 630 | 1.44e-137 | 405 |
| Msa1342130 | AT2G37650.2 | 47.283 | 368 | 186 | 4 | 3 | 366 | 339 | 702 | 1.34e-121 | 367 |
| Msa1342130 | AT2G37650.1 | 47.283 | 368 | 186 | 4 | 3 | 366 | 351 | 714 | 1.84e-121 | 367 |
| Msa1342130 | AT3G46600.2 | 45.013 | 371 | 197 | 4 | 1 | 367 | 6 | 373 | 1.09e-114 | 338 |
| Msa1342130 | AT5G59450.1 | 44.474 | 371 | 199 | 4 | 3 | 367 | 231 | 600 | 2.21e-114 | 345 |
| Msa1342130 | AT3G46600.3 | 45.013 | 371 | 197 | 4 | 1 | 367 | 182 | 549 | 6.24e-113 | 340 |
| Msa1342130 | AT3G46600.1 | 45.013 | 371 | 197 | 4 | 1 | 367 | 214 | 581 | 3.06e-112 | 339 |
| Msa1342130 | AT5G48150.1 | 32.698 | 367 | 239 | 5 | 3 | 364 | 126 | 489 | 1.41e-64 | 213 |
| Msa1342130 | AT5G48150.4 | 32.698 | 367 | 239 | 5 | 3 | 364 | 126 | 489 | 1.41e-64 | 213 |
| Msa1342130 | AT5G48150.2 | 32.698 | 367 | 239 | 5 | 3 | 364 | 126 | 489 | 1.41e-64 | 213 |
| Msa1342130 | AT5G48150.3 | 32.698 | 367 | 239 | 5 | 3 | 364 | 126 | 489 | 1.41e-64 | 213 |
| Msa1342130 | AT2G04890.1 | 31.215 | 362 | 243 | 3 | 3 | 364 | 57 | 412 | 1.74e-63 | 208 |
| Msa1342130 | AT1G50600.3 | 31.436 | 369 | 240 | 4 | 3 | 364 | 163 | 525 | 5.86e-60 | 202 |
| Msa1342130 | AT1G50600.1 | 31.436 | 369 | 240 | 4 | 3 | 364 | 234 | 596 | 2.18e-59 | 202 |
| Msa1342130 | AT1G50600.2 | 31.436 | 369 | 240 | 4 | 3 | 364 | 238 | 600 | 2.49e-59 | 202 |
| Msa1342130 | AT1G21450.1 | 29.459 | 370 | 247 | 7 | 3 | 364 | 229 | 592 | 2.26e-51 | 180 |
| Msa1342130 | AT1G66350.1 | 31.016 | 374 | 223 | 11 | 1 | 364 | 157 | 505 | 7.24e-51 | 177 |
| Msa1342130 | AT3G54220.1 | 31.536 | 371 | 231 | 10 | 3 | 366 | 297 | 651 | 2.27e-49 | 176 |
| Msa1342130 | AT1G14920.1 | 28.495 | 372 | 241 | 9 | 1 | 364 | 174 | 528 | 1.00e-47 | 169 |
| Msa1342130 | AT2G01570.1 | 28.877 | 374 | 237 | 10 | 1 | 364 | 226 | 580 | 2.63e-47 | 169 |
| Msa1342130 | AT3G03450.1 | 27.763 | 371 | 246 | 8 | 3 | 364 | 187 | 544 | 2.66e-47 | 169 |
| Msa1342130 | AT4G17230.1 | 28.533 | 368 | 256 | 3 | 3 | 366 | 162 | 526 | 4.40e-47 | 167 |
| Msa1342130 | AT4G17230.2 | 28.533 | 368 | 256 | 3 | 3 | 366 | 162 | 526 | 4.40e-47 | 167 |
| Msa1342130 | AT5G17490.1 | 26.027 | 365 | 254 | 7 | 3 | 364 | 164 | 515 | 2.91e-44 | 160 |
| Msa1342130 | AT1G50420.1 | 23.005 | 426 | 260 | 9 | 1 | 364 | 59 | 478 | 3.92e-39 | 145 |
| Msa1342130 | AT5G66770.1 | 30.214 | 374 | 235 | 11 | 3 | 364 | 224 | 583 | 6.06e-39 | 146 |
| Msa1342130 | AT1G63100.1 | 27.350 | 351 | 238 | 7 | 3 | 345 | 256 | 597 | 1.81e-36 | 140 |
| Msa1342130 | AT1G63100.2 | 27.195 | 353 | 240 | 7 | 3 | 347 | 281 | 624 | 1.96e-36 | 140 |
| Msa1342130 | AT4G37650.1 | 26.554 | 354 | 226 | 9 | 4 | 332 | 151 | 495 | 3.43e-35 | 135 |
| Msa1342130 | AT5G41920.1 | 29.867 | 375 | 232 | 13 | 1 | 364 | 45 | 399 | 4.58e-35 | 133 |
| Msa1342130 | AT3G50650.1 | 27.273 | 363 | 231 | 10 | 19 | 364 | 195 | 541 | 4.89e-33 | 129 |
| Msa1342130 | AT3G49950.1 | 25.974 | 385 | 255 | 9 | 3 | 366 | 34 | 409 | 3.29e-30 | 120 |
| Msa1342130 | AT5G52510.1 | 25.323 | 387 | 249 | 11 | 1 | 364 | 270 | 639 | 3.08e-27 | 113 |
| Msa1342130 | AT4G08250.1 | 25.762 | 361 | 242 | 12 | 18 | 364 | 128 | 476 | 7.57e-27 | 111 |
| Msa1342130 | AT1G55580.1 | 24.939 | 409 | 248 | 12 | 3 | 364 | 48 | 444 | 4.44e-26 | 108 |
| Msa1342130 | AT3G13840.1 | 24.211 | 380 | 248 | 11 | 3 | 364 | 152 | 509 | 3.27e-13 | 71.2 |
| Msa1342130 | AT4G00150.1 | 23.280 | 378 | 243 | 14 | 1 | 364 | 209 | 553 | 3.57e-12 | 68.2 |
Find 0 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGCTATGAATAAATATATT+CGG | - | tig0005209:677-696 | Msa1342130:intergenic | 15.0% |
| !! | ATGCTATGAATAAATATATT+CGG | - | tig0005209:677-696 | Msa1342130:intergenic | 15.0% |
| !! | TGAAATATCATTACAAGAAA+TGG | - | tig0005209:21-40 | Msa1153560:intergenic | 20.0% |
| !! | CCTTAATCTGATTTAATATT+TGG | - | tig0005209:52-71 | Msa1153560:intergenic | 20.0% |
| !! | CCAAATATTAAATCAGATTA+AGG | + | tig0005209:49-68 | Msa1342130:CDS | 20.0% |
| !! | TCAATTGTATTGCAAAAAAT+TGG | + | tig0005209:504-523 | Msa1342130:CDS | 20.0% |
| !! | CAATTGTATTGCAAAAAATT+GGG | + | tig0005209:505-524 | Msa1342130:CDS | 20.0% |
| !! | TTTATTCATAGCATTGTTAA+TGG | + | tig0005209:683-702 | Msa1342130:CDS | 20.0% |
| !! | CAGATTATAGATAAATTGAA+GGG | + | tig0005209:965-984 | Msa1342130:CDS | 20.0% |
| !! | TGAAATATCATTACAAGAAA+TGG | - | tig0005209:21-40 | Msa1342130:intergenic | 20.0% |
| !! | CCTTAATCTGATTTAATATT+TGG | - | tig0005209:52-71 | Msa1342130:intergenic | 20.0% |
| !! | CCAAATATTAAATCAGATTA+AGG | + | tig0005209:49-68 | Msa1342130:CDS | 20.0% |
| !! | TCAATTGTATTGCAAAAAAT+TGG | + | tig0005209:504-523 | Msa1342130:CDS | 20.0% |
| !! | CAATTGTATTGCAAAAAATT+GGG | + | tig0005209:505-524 | Msa1342130:CDS | 20.0% |
| !! | TTTATTCATAGCATTGTTAA+TGG | + | tig0005209:683-702 | Msa1342130:CDS | 20.0% |
| !! | CAGATTATAGATAAATTGAA+GGG | + | tig0005209:965-984 | Msa1342130:CDS | 20.0% |
| !! | TAATTGCAAGCTTTTCAAAA+GGG | - | tig0005209:244-263 | Msa1342130:intergenic | 25.0% |
| !! | ATAATTGCAAGCTTTTCAAA+AGG | - | tig0005209:245-264 | Msa1342130:intergenic | 25.0% |
| !! | AGTCTTCACATTATAGATTT+TGG | + | tig0005209:308-327 | Msa1342130:CDS | 25.0% |
| !!! | AAGTTGAGGATTTTAAGATA+AGG | + | tig0005209:537-556 | Msa1342130:CDS | 25.0% |
| ! | GCAGATTATAGATAAATTGA+AGG | + | tig0005209:964-983 | Msa1342130:CDS | 25.0% |
| ! | TTATAGATAAATTGAAGGGT+AGG | + | tig0005209:969-988 | Msa1342130:CDS | 25.0% |
| !! | TAATTGCAAGCTTTTCAAAA+GGG | - | tig0005209:244-263 | Msa1342130:intergenic | 25.0% |
| !! | ATAATTGCAAGCTTTTCAAA+AGG | - | tig0005209:245-264 | Msa1342130:intergenic | 25.0% |
| !! | AGTCTTCACATTATAGATTT+TGG | + | tig0005209:308-327 | Msa1342130:CDS | 25.0% |
| !!! | AAGTTGAGGATTTTAAGATA+AGG | + | tig0005209:537-556 | Msa1342130:CDS | 25.0% |
| ! | GCAGATTATAGATAAATTGA+AGG | + | tig0005209:964-983 | Msa1342130:CDS | 25.0% |
| ! | TTATAGATAAATTGAAGGGT+AGG | + | tig0005209:969-988 | Msa1342130:CDS | 25.0% |
| !! | CACATTATAGATTTTGGTGT+TGG | + | tig0005209:314-333 | Msa1342130:CDS | 30.0% |
| !!! | ATAGATTTTGGTGTTGGTTA+TGG | + | tig0005209:320-339 | Msa1342130:CDS | 30.0% |
| GATAGATCTTCCAAATTCAA+TGG | + | tig0005209:415-434 | Msa1342130:CDS | 30.0% | |
| GCAATACAATTGAACTCAAA+AGG | - | tig0005209:497-516 | Msa1342130:intergenic | 30.0% | |
| ATTCATAGCATTGTTAATGG+CGG | + | tig0005209:686-705 | Msa1342130:CDS | 30.0% | |
| TTAAACCTCGTCACAAAAAA+AGG | - | tig0005209:722-741 | Msa1342130:intergenic | 30.0% | |
| !!! | TTTTTTTGTGACGAGGTTTA+AGG | + | tig0005209:721-740 | Msa1342130:CDS | 30.0% |
| ! | ATGAATGTTATAGCTTGTGA+AGG | + | tig0005209:854-873 | Msa1342130:CDS | 30.0% |
| !! | TGGGTTTAAGTCTTTGAAAT+TGG | + | tig0005209:937-956 | Msa1342130:CDS | 30.0% |
| TTGAGAGATGATGCATATAA+CGG | + | tig0005209:992-1011 | Msa1342130:CDS | 30.0% | |
| !! | CACATTATAGATTTTGGTGT+TGG | + | tig0005209:314-333 | Msa1342130:CDS | 30.0% |
| !!! | ATAGATTTTGGTGTTGGTTA+TGG | + | tig0005209:320-339 | Msa1342130:CDS | 30.0% |
| GATAGATCTTCCAAATTCAA+TGG | + | tig0005209:415-434 | Msa1342130:CDS | 30.0% | |
| GCAATACAATTGAACTCAAA+AGG | - | tig0005209:497-516 | Msa1342130:intergenic | 30.0% | |
| ATTCATAGCATTGTTAATGG+CGG | + | tig0005209:686-705 | Msa1342130:CDS | 30.0% | |
| TTAAACCTCGTCACAAAAAA+AGG | - | tig0005209:722-741 | Msa1342130:intergenic | 30.0% | |
| !!! | TTTTTTTGTGACGAGGTTTA+AGG | + | tig0005209:721-740 | Msa1342130:CDS | 30.0% |
| ! | ATGAATGTTATAGCTTGTGA+AGG | + | tig0005209:854-873 | Msa1342130:CDS | 30.0% |
| !! | TGGGTTTAAGTCTTTGAAAT+TGG | + | tig0005209:937-956 | Msa1342130:CDS | 30.0% |
| TTGAGAGATGATGCATATAA+CGG | + | tig0005209:992-1011 | Msa1342130:CDS | 30.0% | |
| CAAAGATTGGCACATTTCTT+TGG | + | tig0005209:101-120 | Msa1342130:CDS | 35.0% | |
| !!! | ATCTGCAGCAGATTTTTTCT+TGG | - | tig0005209:186-205 | Msa1342130:intergenic | 35.0% |
| GAAAAAATCTGCTGCAGATA+TGG | + | tig0005209:187-206 | Msa1342130:CDS | 35.0% | |
| ATCCCTGTGATCTTCAATTT+GGG | - | tig0005209:398-417 | Msa1342130:intergenic | 35.0% | |
| TATCCCTGTGATCTTCAATT+TGG | - | tig0005209:399-418 | Msa1342130:intergenic | 35.0% | |
| TTCACTCTCTCCATTGAATT+TGG | - | tig0005209:428-447 | Msa1342130:intergenic | 35.0% | |
| !! | TTGGGAAAGTATCAAAGTTG+AGG | + | tig0005209:523-542 | Msa1342130:CDS | 35.0% |
| TAACAACAATAGTGAACGTG+AGG | + | tig0005209:784-803 | Msa1342130:CDS | 35.0% | |
| !! | TCCTAATAGGTTGATGTTTG+AGG | + | tig0005209:808-827 | Msa1342130:CDS | 35.0% |
| TCCTCAAACATCAACCTATT+AGG | - | tig0005209:812-831 | Msa1342130:intergenic | 35.0% | |
| !!! | TGATGTTTGAGGAAGTGTTT+TGG | + | tig0005209:819-838 | Msa1342130:CDS | 35.0% |
| !!! | GATGTTTGAGGAAGTGTTTT+GGG | + | tig0005209:820-839 | Msa1342130:CDS | 35.0% |
| !!! | ATGTTTGAGGAAGTGTTTTG+GGG | + | tig0005209:821-840 | Msa1342130:CDS | 35.0% |
| ! | TAACGGTGATTTTCTGTTTG+AGG | + | tig0005209:1009-1028 | Msa1342130:CDS | 35.0% |
| !! | TGATTTTCTGTTTGAGGTGA+AGG | + | tig0005209:1015-1034 | Msa1342130:CDS | 35.0% |
| ! | TGTTTGAGGTGAAGGAAAAT+TGG | + | tig0005209:1023-1042 | Msa1342130:CDS | 35.0% |
| AAGGAAAATTGGATGCTACA+AGG | + | tig0005209:1034-1053 | Msa1342130:CDS | 35.0% | |
| AAAATTGGATGCTACAAGGT+TGG | + | tig0005209:1038-1057 | Msa1342130:CDS | 35.0% | |
| TGGAAGGGTAGAATTCTATT+TGG | + | tig0005209:1058-1077 | Msa1342130:CDS | 35.0% | |
| !! | TTCTATTTGGTTCTTCTTGC+TGG | + | tig0005209:1071-1090 | Msa1342130:CDS | 35.0% |
| !! | TCTATTTGGTTCTTCTTGCT+GGG | + | tig0005209:1072-1091 | Msa1342130:CDS | 35.0% |
| CAAAGATTGGCACATTTCTT+TGG | + | tig0005209:101-120 | Msa1342130:CDS | 35.0% | |
| !!! | ATCTGCAGCAGATTTTTTCT+TGG | - | tig0005209:186-205 | Msa1342130:intergenic | 35.0% |
| GAAAAAATCTGCTGCAGATA+TGG | + | tig0005209:187-206 | Msa1342130:CDS | 35.0% | |
| ATCCCTGTGATCTTCAATTT+GGG | - | tig0005209:398-417 | Msa1342130:intergenic | 35.0% | |
| TATCCCTGTGATCTTCAATT+TGG | - | tig0005209:399-418 | Msa1342130:intergenic | 35.0% | |
| TTCACTCTCTCCATTGAATT+TGG | - | tig0005209:428-447 | Msa1342130:intergenic | 35.0% | |
| !! | TTGGGAAAGTATCAAAGTTG+AGG | + | tig0005209:523-542 | Msa1342130:CDS | 35.0% |
| TAACAACAATAGTGAACGTG+AGG | + | tig0005209:784-803 | Msa1342130:CDS | 35.0% | |
| !! | TCCTAATAGGTTGATGTTTG+AGG | + | tig0005209:808-827 | Msa1342130:CDS | 35.0% |
| TCCTCAAACATCAACCTATT+AGG | - | tig0005209:812-831 | Msa1342130:intergenic | 35.0% | |
| !!! | TGATGTTTGAGGAAGTGTTT+TGG | + | tig0005209:819-838 | Msa1342130:CDS | 35.0% |
| !!! | GATGTTTGAGGAAGTGTTTT+GGG | + | tig0005209:820-839 | Msa1342130:CDS | 35.0% |
| !!! | ATGTTTGAGGAAGTGTTTTG+GGG | + | tig0005209:821-840 | Msa1342130:CDS | 35.0% |
| ! | TAACGGTGATTTTCTGTTTG+AGG | + | tig0005209:1009-1028 | Msa1342130:CDS | 35.0% |
| !! | TGATTTTCTGTTTGAGGTGA+AGG | + | tig0005209:1015-1034 | Msa1342130:CDS | 35.0% |
| ! | TGTTTGAGGTGAAGGAAAAT+TGG | + | tig0005209:1023-1042 | Msa1342130:CDS | 35.0% |
| AAGGAAAATTGGATGCTACA+AGG | + | tig0005209:1034-1053 | Msa1342130:CDS | 35.0% | |
| AAAATTGGATGCTACAAGGT+TGG | + | tig0005209:1038-1057 | Msa1342130:CDS | 35.0% | |
| TGGAAGGGTAGAATTCTATT+TGG | + | tig0005209:1058-1077 | Msa1342130:CDS | 35.0% | |
| !! | TTCTATTTGGTTCTTCTTGC+TGG | + | tig0005209:1071-1090 | Msa1342130:CDS | 35.0% |
| !! | TCTATTTGGTTCTTCTTGCT+GGG | + | tig0005209:1072-1091 | Msa1342130:CDS | 35.0% |
| AAGGAACATTCTTCTCCAAC+AGG | + | tig0005209:68-87 | Msa1342130:CDS | 40.0% | |
| !! | AGGTGATGGAACTCAAAGAT+TGG | + | tig0005209:88-107 | Msa1342130:CDS | 40.0% |
| GGCATGCTGATGAATAAACT+TGG | - | tig0005209:223-242 | Msa1342130:intergenic | 40.0% | |
| !! | GTGTTGGTTATGGTTTCAAG+TGG | + | tig0005209:330-349 | Msa1342130:CDS | 40.0% |
| GATAGACGGTGTATAAAAGC+AGG | - | tig0005209:356-375 | Msa1342130:intergenic | 40.0% | |
| CACCCAAATTGAAGATCACA+GGG | + | tig0005209:393-412 | Msa1342130:CDS | 40.0% | |
| ACTCGATGAGACAGTAGTTT+CGG | + | tig0005209:607-626 | Msa1342130:CDS | 40.0% | |
| AAATCCAAAACAGCACCCTT+CGG | - | tig0005209:638-657 | Msa1342130:intergenic | 40.0% | |
| !!! | ATGCACCTTTTTTTGTGACG+AGG | + | tig0005209:714-733 | Msa1342130:CDS | 40.0% |
| !!! | TGTTTGAGGAAGTGTTTTGG+GGG | + | tig0005209:822-841 | Msa1342130:CDS | 40.0% |
| ! | TAGCTTGTGAAGGTTGTGAT+AGG | + | tig0005209:864-883 | Msa1342130:CDS | 40.0% |
| AGCTTGTGAAGGTTGTGATA+GGG | + | tig0005209:865-884 | Msa1342130:CDS | 40.0% | |
| !! | CATATAGGCATTGGCATTCT+AGG | + | tig0005209:903-922 | Msa1342130:CDS | 40.0% |
| AAGGAACATTCTTCTCCAAC+AGG | + | tig0005209:68-87 | Msa1342130:CDS | 40.0% | |
| !! | AGGTGATGGAACTCAAAGAT+TGG | + | tig0005209:88-107 | Msa1342130:CDS | 40.0% |
| GGCATGCTGATGAATAAACT+TGG | - | tig0005209:223-242 | Msa1342130:intergenic | 40.0% | |
| !! | GTGTTGGTTATGGTTTCAAG+TGG | + | tig0005209:330-349 | Msa1342130:CDS | 40.0% |
| GATAGACGGTGTATAAAAGC+AGG | - | tig0005209:356-375 | Msa1342130:intergenic | 40.0% | |
| CACCCAAATTGAAGATCACA+GGG | + | tig0005209:393-412 | Msa1342130:CDS | 40.0% | |
| ACTCGATGAGACAGTAGTTT+CGG | + | tig0005209:607-626 | Msa1342130:CDS | 40.0% | |
| AAATCCAAAACAGCACCCTT+CGG | - | tig0005209:638-657 | Msa1342130:intergenic | 40.0% | |
| !!! | ATGCACCTTTTTTTGTGACG+AGG | + | tig0005209:714-733 | Msa1342130:CDS | 40.0% |
| !!! | TGTTTGAGGAAGTGTTTTGG+GGG | + | tig0005209:822-841 | Msa1342130:CDS | 40.0% |
| ! | TAGCTTGTGAAGGTTGTGAT+AGG | + | tig0005209:864-883 | Msa1342130:CDS | 40.0% |
| AGCTTGTGAAGGTTGTGATA+GGG | + | tig0005209:865-884 | Msa1342130:CDS | 40.0% | |
| !! | CATATAGGCATTGGCATTCT+AGG | + | tig0005209:903-922 | Msa1342130:CDS | 40.0% |
| CATTCTTCTCCAACAGGTGA+TGG | + | tig0005209:74-93 | Msa1342130:CDS | 45.0% | |
| ! | CTTTGAGTTCCATCACCTGT+TGG | - | tig0005209:86-105 | Msa1342130:intergenic | 45.0% |
| CACCGTCTATCGAAAAGATC+CGG | + | tig0005209:365-384 | Msa1342130:CDS | 45.0% | |
| ! | CACCGGATCTTTTCGATAGA+CGG | - | tig0005209:370-389 | Msa1342130:intergenic | 45.0% |
| GTCTATCGAAAAGATCCGGT+GGG | + | tig0005209:369-388 | Msa1342130:CDS | 45.0% | |
| CCTGTGATCTTCAATTTGGG+TGG | - | tig0005209:395-414 | Msa1342130:intergenic | 45.0% | |
| CCACCCAAATTGAAGATCAC+AGG | + | tig0005209:392-411 | Msa1342130:CDS | 45.0% | |
| ATGGAGAGAGTGAATGAAGC+AGG | + | tig0005209:434-453 | Msa1342130:CDS | 45.0% | |
| GAGTGAATGAAGCAGGTCTT+AGG | + | tig0005209:441-460 | Msa1342130:CDS | 45.0% | |
| AGTAGTTTCGGAGAATCCGA+AGG | + | tig0005209:619-638 | Msa1342130:CDS | 45.0% | |
| GTAGTTTCGGAGAATCCGAA+GGG | + | tig0005209:620-639 | Msa1342130:CDS | 45.0% | |
| GTGAACGTGAGGATCCTAAT+AGG | + | tig0005209:795-814 | Msa1342130:CDS | 45.0% | |
| AAGGTTGTGATAGGGTTGAG+AGG | + | tig0005209:873-892 | Msa1342130:CDS | 45.0% | |
| TTGAGAGGCCAGAGACATAT+AGG | + | tig0005209:888-907 | Msa1342130:CDS | 45.0% | |
| TGCCAATGCCTATATGTCTC+TGG | - | tig0005209:899-918 | Msa1342130:intergenic | 45.0% | |
| ATTCTAGGCACGTGGGAAAT+GGG | + | tig0005209:918-937 | Msa1342130:CDS | 45.0% | |
| TTGGATGCTACAAGGTTGGA+AGG | + | tig0005209:1042-1061 | Msa1342130:CDS | 45.0% | |
| TGGATGCTACAAGGTTGGAA+GGG | + | tig0005209:1043-1062 | Msa1342130:CDS | 45.0% | |
| CATTCTTCTCCAACAGGTGA+TGG | + | tig0005209:74-93 | Msa1342130:CDS | 45.0% | |
| ! | CTTTGAGTTCCATCACCTGT+TGG | - | tig0005209:86-105 | Msa1342130:intergenic | 45.0% |
| CACCGTCTATCGAAAAGATC+CGG | + | tig0005209:365-384 | Msa1342130:CDS | 45.0% | |
| ! | CACCGGATCTTTTCGATAGA+CGG | - | tig0005209:370-389 | Msa1342130:intergenic | 45.0% |
| GTCTATCGAAAAGATCCGGT+GGG | + | tig0005209:369-388 | Msa1342130:CDS | 45.0% | |
| CCTGTGATCTTCAATTTGGG+TGG | - | tig0005209:395-414 | Msa1342130:intergenic | 45.0% | |
| CCACCCAAATTGAAGATCAC+AGG | + | tig0005209:392-411 | Msa1342130:CDS | 45.0% | |
| ATGGAGAGAGTGAATGAAGC+AGG | + | tig0005209:434-453 | Msa1342130:CDS | 45.0% | |
| GAGTGAATGAAGCAGGTCTT+AGG | + | tig0005209:441-460 | Msa1342130:CDS | 45.0% | |
| AGTAGTTTCGGAGAATCCGA+AGG | + | tig0005209:619-638 | Msa1342130:CDS | 45.0% | |
| GTAGTTTCGGAGAATCCGAA+GGG | + | tig0005209:620-639 | Msa1342130:CDS | 45.0% | |
| GTGAACGTGAGGATCCTAAT+AGG | + | tig0005209:795-814 | Msa1342130:CDS | 45.0% | |
| AAGGTTGTGATAGGGTTGAG+AGG | + | tig0005209:873-892 | Msa1342130:CDS | 45.0% | |
| TTGAGAGGCCAGAGACATAT+AGG | + | tig0005209:888-907 | Msa1342130:CDS | 45.0% | |
| TGCCAATGCCTATATGTCTC+TGG | - | tig0005209:899-918 | Msa1342130:intergenic | 45.0% | |
| ATTCTAGGCACGTGGGAAAT+GGG | + | tig0005209:918-937 | Msa1342130:CDS | 45.0% | |
| TTGGATGCTACAAGGTTGGA+AGG | + | tig0005209:1042-1061 | Msa1342130:CDS | 45.0% | |
| TGGATGCTACAAGGTTGGAA+GGG | + | tig0005209:1043-1062 | Msa1342130:CDS | 45.0% | |
| GAAGCACGTTTAGCAGGAAC+TGG | + | tig0005209:134-153 | Msa1342130:CDS | 50.0% | |
| CGTCTATCGAAAAGATCCGG+TGG | + | tig0005209:368-387 | Msa1342130:CDS | 50.0% | |
| !!! | GAATCCGAAGGGTGCTGTTT+TGG | + | tig0005209:631-650 | Msa1342130:CDS | 50.0% |
| GGCCAGAGACATATAGGCAT+TGG | + | tig0005209:894-913 | Msa1342130:CDS | 50.0% | |
| CATTGGCATTCTAGGCACGT+GGG | + | tig0005209:911-930 | Msa1342130:CDS | 50.0% | |
| CATTCTAGGCACGTGGGAAA+TGG | + | tig0005209:917-936 | Msa1342130:CDS | 50.0% | |
| GAAGCACGTTTAGCAGGAAC+TGG | + | tig0005209:134-153 | Msa1342130:CDS | 50.0% | |
| CGTCTATCGAAAAGATCCGG+TGG | + | tig0005209:368-387 | Msa1342130:CDS | 50.0% | |
| !!! | GAATCCGAAGGGTGCTGTTT+TGG | + | tig0005209:631-650 | Msa1342130:CDS | 50.0% |
| GGCCAGAGACATATAGGCAT+TGG | + | tig0005209:894-913 | Msa1342130:CDS | 50.0% | |
| CATTGGCATTCTAGGCACGT+GGG | + | tig0005209:911-930 | Msa1342130:CDS | 50.0% | |
| CATTCTAGGCACGTGGGAAA+TGG | + | tig0005209:917-936 | Msa1342130:CDS | 50.0% | |
| GCACTCGAAGCACGTTTAGC+AGG | + | tig0005209:128-147 | Msa1342130:CDS | 55.0% | |
| CTTCAATTTGGGTGGCCCAC+CGG | - | tig0005209:387-406 | Msa1342130:intergenic | 55.0% | |
| ! | GCATTGGCATTCTAGGCACG+TGG | + | tig0005209:910-929 | Msa1342130:CDS | 55.0% |
| GCACTCGAAGCACGTTTAGC+AGG | + | tig0005209:128-147 | Msa1342130:CDS | 55.0% | |
| CTTCAATTTGGGTGGCCCAC+CGG | - | tig0005209:387-406 | Msa1342130:intergenic | 55.0% | |
| ! | GCATTGGCATTCTAGGCACG+TGG | + | tig0005209:910-929 | Msa1342130:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0005209 | gene | 2 | 1105 | 2 | ID=Msa1342130;Name=Msa1342130 |
| tig0005209 | mRNA | 2 | 1105 | 2 | ID=Msa1342130-mRNA-1;Parent=Msa1342130;Name=Msa1342130-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|367 |
| tig0005209 | exon | 2 | 1105 | 2 | ID=Msa1342130-mRNA-1:exon:3477;Parent=Msa1342130-mRNA-1 |
| tig0005209 | CDS | 2 | 1105 | 2 | ID=Msa1342130-mRNA-1:cds;Parent=Msa1342130-mRNA-1 |
| Gene Sequence |
| Protein sequence |
