AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1342140

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1342140 MtrunA17_Chr2g0328361 79.128 642 55 3 1 588 1 617 0.0 982
Msa1342140 MtrunA17_Chr2g0328381 75.846 650 88 5 1 588 1 643 0.0 969
Msa1342140 MtrunA17_Chr2g0328341 75.730 651 84 8 1 588 1 640 0.0 953
Msa1342140 MtrunA17_Chr4g0031721 56.982 444 151 7 182 588 246 686 2.11e-173 508
Msa1342140 MtrunA17_Chr2g0328371 81.781 247 45 0 295 541 6 252 2.13e-150 432
Msa1342140 MtrunA17_Chr2g0328391 41.186 624 273 12 46 588 61 671 5.61e-150 447
Msa1342140 MtrunA17_Chr4g0031701 40.065 619 277 14 46 588 28 628 1.65e-144 431
Msa1342140 MtrunA17_Chr4g0031731 39.550 622 276 15 46 588 28 628 9.40e-140 419
Msa1342140 MtrunA17_Chr4g0031741 39.601 601 283 11 50 588 70 652 2.02e-137 414
Msa1342140 MtrunA17_Chr2g0328431 38.662 613 295 13 50 588 51 656 4.72e-136 410
Msa1342140 MtrunA17_Chr4g0031711 47.511 442 183 10 191 588 299 735 8.65e-136 412
Msa1342140 MtrunA17_Chr2g0328411 38.752 609 296 13 50 586 51 654 2.18e-135 410
Msa1342140 MtrunA17_Chr7g0238891 48.579 387 166 4 233 588 358 742 4.66e-135 411
Msa1342140 MtrunA17_Chr2g0328401 37.563 591 281 14 54 566 55 635 6.73e-122 374
Msa1342140 MtrunA17_Chr3g0101141 28.814 531 289 17 116 585 39 541 7.61e-55 194
Msa1342140 MtrunA17_Chr5g0447691 30.400 375 225 5 243 585 173 543 5.49e-54 192
Msa1342140 MtrunA17_Chr2g0290241 31.332 383 225 7 238 585 45 424 1.31e-52 186
Msa1342140 MtrunA17_Chr4g0076091 29.973 377 229 5 242 586 170 543 1.86e-52 188
Msa1342140 MtrunA17_Chr2g0319091 30.400 375 225 5 243 585 208 578 2.64e-51 186
Msa1342140 MtrunA17_Chr3g0125811 31.283 374 219 7 245 585 201 569 5.36e-51 184
Msa1342140 MtrunA17_Chr7g0224271 29.306 389 219 6 242 585 295 672 7.26e-50 183
Msa1342140 MtrunA17_Chr5g0445331 29.659 381 224 9 243 585 157 531 1.26e-49 180
Msa1342140 MtrunA17_Chr1g0159461 30.108 372 226 4 245 585 223 591 5.17e-49 179
Msa1342140 MtrunA17_Chr8g0376381 30.270 370 230 6 237 585 159 521 1.03e-48 177
Msa1342140 MtrunA17_Chr3g0110971 31.510 384 222 7 237 585 209 586 2.39e-48 177
Msa1342140 MtrunA17_Chr8g0357601 29.639 388 216 10 242 585 177 551 8.60e-44 164
Msa1342140 MtrunA17_Chr4g0057891 28.534 382 225 9 244 585 146 519 2.55e-43 162
Msa1342140 MtrunA17_Chr2g0306641 31.383 376 223 9 239 585 117 486 2.31e-42 159
Msa1342140 MtrunA17_Chr7g0245601 30.137 365 214 9 251 587 442 793 1.13e-40 158
Msa1342140 MtrunA17_Chr5g0396491 25.909 440 235 8 233 585 42 477 4.80e-38 146
Msa1342140 MtrunA17_Chr4g0057291 25.648 386 236 9 243 587 288 663 3.16e-36 144
Msa1342140 MtrunA17_Chr4g0039661 28.836 378 219 10 244 585 191 554 1.85e-34 137
Msa1342140 MtrunA17_Chr3g0085681 25.537 419 222 9 248 585 26 435 9.69e-34 133
Msa1342140 MtrunA17_Chr4g0038851 24.943 437 236 9 236 585 37 468 1.55e-33 133
Msa1342140 MtrunA17_Chr7g0236851 28.571 287 194 5 305 585 375 656 4.56e-31 128
Msa1342140 MtrunA17_Chr2g0294461 25.000 388 245 6 239 585 202 584 1.16e-30 126
Msa1342140 MtrunA17_Chr4g0038761 26.810 373 222 9 251 588 88 444 2.21e-30 124
Msa1342140 MtrunA17_Chr6g0468561 28.191 376 222 12 248 585 296 661 6.12e-30 125
Msa1342140 MtrunA17_Chr5g0401131 27.344 384 230 13 247 587 114 491 8.83e-29 120
Msa1342140 MtrunA17_Chr1g0183641 27.467 375 231 12 239 585 115 476 1.35e-28 119
Msa1342140 MtrunA17_Chr2g0294471 24.611 386 246 7 239 585 196 575 8.84e-28 117
Msa1342140 MtrunA17_Chr1g0200401 26.718 393 220 14 247 585 80 458 1.28e-27 116
Msa1342140 MtrunA17_Chr7g0270031 25.984 381 234 10 242 585 184 553 1.63e-25 110
Msa1342140 MtrunA17_Chr3g0085361 26.036 338 187 9 301 585 22 349 8.28e-24 103
Msa1342140 MtrunA17_Chr5g0424131 26.531 392 221 16 247 585 121 498 1.15e-22 101
Msa1342140 MtrunA17_Chr2g0329591 26.923 390 225 11 247 587 74 452 5.57e-20 93.2
Msa1342140 MtrunA17_Chr3g0114841 27.333 300 185 11 302 585 217 499 7.99e-20 92.8
Msa1342140 MtrunA17_Chr5g0401421 21.327 422 250 10 244 588 32 448 1.12e-19 92.0
Msa1342140 MtrunA17_Chr1g0194621 23.469 392 237 12 242 585 141 517 1.49e-19 92.0
Msa1342140 MtrunA17_Chr4g0053901 21.905 420 248 8 244 588 56 470 3.18e-19 90.9
Msa1342140 MtrunA17_Chr8g0344101 23.919 393 229 14 247 585 223 599 3.59e-12 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1342140 AT2G29060.2 41.722 604 282 13 50 587 57 656 3.57e-153 455
Msa1342140 AT2G29060.1 39.375 640 283 11 50 587 57 693 3.42e-149 446
Msa1342140 AT1G07530.1 47.289 461 196 8 172 588 310 767 1.38e-145 439
Msa1342140 AT1G07520.2 45.414 447 201 7 180 588 90 531 1.12e-132 398
Msa1342140 AT1G07520.4 45.414 447 201 7 180 588 90 531 1.12e-132 398
Msa1342140 AT2G29065.1 39.130 598 304 11 50 588 34 630 2.59e-132 400
Msa1342140 AT1G07520.3 45.414 447 201 7 180 588 255 696 3.99e-131 400
Msa1342140 AT1G07520.1 45.414 447 201 7 180 588 254 695 4.10e-131 400
Msa1342140 AT5G59450.1 37.370 578 290 11 49 588 57 600 4.50e-121 371
Msa1342140 AT2G37650.2 47.135 384 168 5 235 587 323 702 2.16e-117 364
Msa1342140 AT2G37650.1 47.135 384 168 5 235 587 335 714 2.90e-117 364
Msa1342140 AT3G46600.3 42.353 425 209 6 194 588 131 549 2.53e-112 347
Msa1342140 AT3G46600.1 42.353 425 209 6 194 588 163 581 4.31e-112 347
Msa1342140 AT3G46600.2 44.267 375 177 4 244 588 1 373 4.88e-108 329
Msa1342140 AT5G48150.1 31.378 392 234 5 226 585 101 489 2.09e-57 201
Msa1342140 AT5G48150.4 31.378 392 234 5 226 585 101 489 2.09e-57 201
Msa1342140 AT5G48150.2 31.378 392 234 5 226 585 101 489 2.09e-57 201
Msa1342140 AT5G48150.3 31.378 392 234 5 226 585 101 489 2.09e-57 201
Msa1342140 AT1G50600.3 32.080 399 230 7 220 585 135 525 2.15e-56 199
Msa1342140 AT1G50600.1 32.080 399 230 7 220 585 206 596 4.85e-56 199
Msa1342140 AT1G50600.2 32.080 399 230 7 220 585 210 600 7.64e-56 199
Msa1342140 AT2G04890.1 30.458 371 223 6 243 585 49 412 6.90e-55 192
Msa1342140 AT1G21450.1 26.587 583 355 16 49 585 37 592 1.84e-48 178
Msa1342140 AT3G03450.1 29.551 379 230 9 237 585 173 544 1.64e-45 169
Msa1342140 AT1G66350.1 30.376 372 225 7 237 585 145 505 3.19e-45 167
Msa1342140 AT4G17230.1 29.894 378 229 7 242 587 153 526 3.99e-45 168
Msa1342140 AT4G17230.2 29.894 378 229 7 242 587 153 526 3.99e-45 168
Msa1342140 AT2G01570.1 29.973 377 226 8 237 585 214 580 9.36e-44 165
Msa1342140 AT3G54220.1 31.061 396 229 9 223 587 269 651 1.91e-43 165
Msa1342140 AT5G17490.1 27.297 370 240 6 239 585 152 515 6.89e-43 161
Msa1342140 AT1G14920.1 28.533 375 234 7 237 585 162 528 1.02e-41 158
Msa1342140 AT5G66770.1 29.781 366 220 9 251 585 224 583 9.44e-37 145
Msa1342140 AT1G50420.1 23.266 447 252 8 226 585 36 478 2.52e-32 130
Msa1342140 AT3G50650.1 26.496 351 222 7 267 585 195 541 2.44e-31 128
Msa1342140 AT5G52510.1 27.105 380 232 12 245 585 266 639 8.24e-31 127
Msa1342140 AT1G63100.2 26.776 366 226 8 235 568 269 624 3.58e-29 123
Msa1342140 AT1G63100.1 27.027 370 220 9 235 568 244 599 3.71e-29 122
Msa1342140 AT4G37650.1 25.770 357 210 10 246 553 145 495 1.40e-28 120
Msa1342140 AT5G41920.1 27.895 380 222 12 241 585 37 399 3.75e-28 117
Msa1342140 AT3G49950.1 24.416 385 242 9 247 587 30 409 4.60e-24 105
Msa1342140 AT1G55580.1 28.383 303 186 9 302 585 154 444 6.87e-24 105
Msa1342140 AT4G08250.1 25.831 391 235 16 239 585 97 476 2.26e-21 98.2
Msa1342140 AT3G13840.1 24.274 379 230 11 247 585 148 509 8.87e-14 74.7

Find 104 sgRNAs with CRISPR-Local

Find 286 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCACTCTCTCCAACAAATT+TGG 0.135021 tig0005209:-18224 Msa1342140:intergenic
AGTCTTCACATTATAGATTT+TGG 0.151926 tig0005209:+18107 Msa1342140:CDS
GGAGGAATTGGAAGAGTATT+TGG 0.153984 tig0005209:-17478 Msa1342140:intergenic
ATGCTATGAACAAATATATT+TGG 0.177812 tig0005209:-18473 Msa1342140:intergenic
CAAAGATTGGCACATTTCTT+TGG 0.204755 tig0005209:+17898 Msa1342140:CDS
GAATTCTCTTCAACTGTTCT+TGG 0.222104 tig0005209:+17024 Msa1342140:CDS
GTCAGGGCTATGCACAAATT+TGG 0.233828 tig0005209:-17359 Msa1342140:intergenic
GAATCCGAGGGGTGCTGTTT+TGG 0.240293 tig0005209:+18430 Msa1342140:CDS
TGGGTTTAAGTCTTTGAAAT+TGG 0.243482 tig0005209:+18736 Msa1342140:CDS
TATCCCTGTGATCCTCAATT+TGG 0.247519 tig0005209:-18195 Msa1342140:intergenic
AGTCTTCTTCCATGAGAAAT+TGG 0.250588 tig0005209:-17152 Msa1342140:intergenic
TCTTAATCTGGTTTAATAAC+TGG 0.258792 tig0005209:-17846 Msa1342140:intergenic
GAAACAAAGTTTGGAGGAAT+TGG 0.270095 tig0005209:-17490 Msa1342140:intergenic
TTCTATTTGGTTCTTCTTGT+TGG 0.274191 tig0005209:+18870 Msa1342140:CDS
TGAAATATCATTACAAGAAA+TGG 0.276552 tig0005209:-17815 Msa1342140:intergenic
TTTGTTCATAGCATTGTTAA+TGG 0.283287 tig0005209:+18482 Msa1342140:CDS
ATTCACTCTCCCTTTGTTCA+TGG 0.291853 tig0005209:-17005 Msa1342140:intergenic
CAAACAGATTCTATGGTTAT+AGG 0.296898 tig0005209:+17731 Msa1342140:CDS
AGTAATTTATCAAATAATTC+TGG 0.301090 tig0005209:-17640 Msa1342140:intergenic
GAGAAGAATGTTTCTTAATC+TGG 0.311876 tig0005209:-17858 Msa1342140:intergenic
GAGGAATTGGAAGAGTATTT+GGG 0.326156 tig0005209:-17477 Msa1342140:intergenic
TGGAAGGGTAGAGTTCTATT+TGG 0.329745 tig0005209:+18857 Msa1342140:CDS
TCGAATTGAGAAACAAAGTT+TGG 0.339338 tig0005209:-17499 Msa1342140:intergenic
GAATTATCAAACAGATTCTA+TGG 0.344805 tig0005209:+17724 Msa1342140:CDS
TCCTCAAACATCAACCTATT+AGG 0.349519 tig0005209:-18608 Msa1342140:intergenic
TGATGTTTGAGGAAGAGTTT+TGG 0.352833 tig0005209:+18618 Msa1342140:CDS
GCAACTTATTGCGAACGTTT+CGG 0.353167 tig0005209:+18266 Msa1342140:CDS
TGGAAGACTCTTCATGTTCA+TGG 0.366829 tig0005209:-17110 Msa1342140:intergenic
AGAGTATTTGGGAGTGGAAA+AGG 0.382981 tig0005209:-17466 Msa1342140:intergenic
ATCCCTGTGATCCTCAATTT+GGG 0.383992 tig0005209:-18194 Msa1342140:intergenic
ACCTGATGAGACAGTTGTTT+CGG 0.393796 tig0005209:+18406 Msa1342140:CDS
GCAATACCATTGAACTCAAA+AGG 0.401581 tig0005209:-18293 Msa1342140:intergenic
GTTGAAGAGCAAAGGAATCT+TGG 0.406232 tig0005209:-17197 Msa1342140:intergenic
GAGTGAATGGAACAGGTCTT+AGG 0.408191 tig0005209:+18240 Msa1342140:CDS
GATAGATCTTCCAAATTTGT+TGG 0.422261 tig0005209:+18214 Msa1342140:CDS
TTGAGAGGCCAGAGACATAT+AGG 0.428001 tig0005209:+18687 Msa1342140:CDS
AAGAAACATTCTTCTCCAAC+AGG 0.432850 tig0005209:+17865 Msa1342140:CDS
TTGAACGTGAGGATCCTAAT+AGG 0.434511 tig0005209:+18594 Msa1342140:CDS
TTTGATAAATTACTAGTCCT+TGG 0.440112 tig0005209:+17649 Msa1342140:CDS
ATGAGGAAGTTGTGGATTTG+AGG 0.441434 tig0005209:+17767 Msa1342140:CDS
TAGCTTGTGAAGGCTGTGAT+AGG 0.447026 tig0005209:+18663 Msa1342140:CDS
ACTCTTCATGTTCATGGTGT+TGG 0.448056 tig0005209:-17104 Msa1342140:intergenic
TTGGAGAGAGTGAATGGAAC+AGG 0.449006 tig0005209:+18233 Msa1342140:CDS
GAGAAAATGCTCTTCTTCAA+AGG 0.453527 tig0005209:-17563 Msa1342140:intergenic
GAAGCACGTTTAGCAGGAAC+TGG 0.455780 tig0005209:+17931 Msa1342140:CDS
CTTTGAGTTCCATCACCTGT+TGG 0.456885 tig0005209:-17880 Msa1342140:intergenic
TGCCATTGCCTATATGTCTC+TGG 0.465075 tig0005209:-18695 Msa1342140:intergenic
GAAGTGGAGGAAGGAGGAGG+AGG 0.469076 tig0005209:-17297 Msa1342140:intergenic
GGTTATGGTTTCAAGTGGCC+TGG 0.469133 tig0005209:+18134 Msa1342140:CDS
AATTTGTTGGAGAGAGTGAA+TGG 0.471019 tig0005209:+18227 Msa1342140:CDS
CATCGTTTATCGAAAAGATC+TGG 0.473353 tig0005209:+18164 Msa1342140:CDS
TCCTAATAGGTTGATGTTTG+AGG 0.474185 tig0005209:+18607 Msa1342140:CDS
GAAGAGTCTTCCAATGCTCT+TGG 0.479029 tig0005209:+17120 Msa1342140:CDS
TCCGAAACAACTGTCTCATC+AGG 0.480396 tig0005209:-18407 Msa1342140:intergenic
GAGTATTTGGGAGTGGAAAA+GGG 0.483840 tig0005209:-17465 Msa1342140:intergenic
AGAAGACGACGACGAAGAAG+TGG 0.487980 tig0005209:-17313 Msa1342140:intergenic
GAAGAAGTGGAGGAAGGAGG+AGG 0.488333 tig0005209:-17300 Msa1342140:intergenic
GCACTTGAAGCACGTTTAGC+AGG 0.499951 tig0005209:+17925 Msa1342140:CDS
CATGTTGTGAAGCTCTATGC+TGG 0.501576 tig0005209:-18896 Msa1342140:intergenic
GTTAATATAACCAAGAGCAT+TGG 0.505462 tig0005209:-17130 Msa1342140:intergenic
CCACCCAAATTGAGGATCAC+AGG 0.506955 tig0005209:+18191 Msa1342140:CDS
CTCAGTAAGTTGAAGAGCAA+AGG 0.507074 tig0005209:-17205 Msa1342140:intergenic
CATTCTTCTCCAACAGGTGA+TGG 0.507316 tig0005209:+17871 Msa1342140:CDS
TAGGAGACAAAGAAGTTATG+AGG 0.508963 tig0005209:+17750 Msa1342140:CDS
AAAATTGGATGCTACAAGGT+TGG 0.509330 tig0005209:+18837 Msa1342140:CDS
GCAGTAGCAGTAGGAGGAGG+AGG 0.511002 tig0005209:-17267 Msa1342140:intergenic
ATTGGAAGAGTATTTGGGAG+TGG 0.520042 tig0005209:-17472 Msa1342140:intergenic
AATTGAGAAACAAAGTTTGG+AGG 0.522706 tig0005209:-17496 Msa1342140:intergenic
TTATATTAACCAATTTCTCA+TGG 0.526067 tig0005209:+17143 Msa1342140:CDS
AAGAAGTTATGAGGAAGTTG+TGG 0.533441 tig0005209:+17759 Msa1342140:CDS
GCATGTTATAGATAAATTGA+AGG 0.536806 tig0005209:+18763 Msa1342140:CDS
TGATTCACACCATGAACAAA+GGG 0.537296 tig0005209:+16996 Msa1342140:CDS
CATGTTATAGATAAATTGAA+GGG 0.543479 tig0005209:+18764 Msa1342140:CDS
GTCTTAATTACCTCATGAGA+AGG 0.545201 tig0005209:-17535 Msa1342140:intergenic
TTGGATGCTACAAGGTTGGA+AGG 0.548278 tig0005209:+18841 Msa1342140:CDS
TTGGGAAAGTATCAAAGTTG+AGG 0.550259 tig0005209:+18322 Msa1342140:CDS
CTGGCGGGCCACCCAAATTG+AGG 0.551191 tig0005209:+18183 Msa1342140:CDS
GTAGCAGTAGGAGGAGGAGG+AGG 0.552690 tig0005209:-17264 Msa1342140:intergenic
CAGTTGTTTCGGAGAATCCG+AGG 0.555081 tig0005209:+18417 Msa1342140:CDS
AGGTGATGGAACTCAAAGAT+TGG 0.559955 tig0005209:+17885 Msa1342140:CDS
GCAGCAGTAGCAGTAGGAGG+AGG 0.561458 tig0005209:-17270 Msa1342140:intergenic
GGAGCAGCAGCAGTAGCAGT+AGG 0.562763 tig0005209:-17276 Msa1342140:intergenic
GGCCAGAGACATATAGGCAA+TGG 0.582352 tig0005209:+18693 Msa1342140:CDS
AGTTGTTTCGGAGAATCCGA+GGG 0.585285 tig0005209:+18418 Msa1342140:CDS
CATGGAAGATGATGACATAG+AGG 0.588846 tig0005209:+17065 Msa1342140:CDS
TCTTAATTACCTCATGAGAA+GGG 0.597606 tig0005209:-17534 Msa1342140:intergenic
CACCCAAATTGAGGATCACA+GGG 0.601284 tig0005209:+18192 Msa1342140:CDS
TTGATTCACACCATGAACAA+AGG 0.606981 tig0005209:+16995 Msa1342140:CDS
GTGTTGGTTATGGTTTCAAG+TGG 0.612035 tig0005209:+18129 Msa1342140:CDS
GACGAAGAAGTGGAGGAAGG+AGG 0.612049 tig0005209:-17303 Msa1342140:intergenic
AGACGACGACGAAGAAGTGG+AGG 0.616647 tig0005209:-17310 Msa1342140:intergenic
AAATCCAAAACAGCACCCCT+CGG 0.616918 tig0005209:-18434 Msa1342140:intergenic
GCAGCAGCAGTAGCAGTAGG+AGG 0.617587 tig0005209:-17273 Msa1342140:intergenic
GACGACGAAGAAGTGGAGGA+AGG 0.619817 tig0005209:-17306 Msa1342140:intergenic
CCTGTGATCCTCAATTTGGG+TGG 0.623258 tig0005209:-18191 Msa1342140:intergenic
GATAAACGATGTATTAAACC+AGG 0.631290 tig0005209:-18152 Msa1342140:intergenic
GTTTATCGAAAAGATCTGGC+GGG 0.631371 tig0005209:+18168 Msa1342140:CDS
TGGATGCTACAAGGTTGGAA+GGG 0.641743 tig0005209:+18842 Msa1342140:CDS
TTGTTGTAGATGGACAAAAG+AGG 0.645747 tig0005209:+16970 None:intergenic
CGTTTATCGAAAAGATCTGG+CGG 0.648801 tig0005209:+18167 Msa1342140:CDS
TAACAACAATGTTGAACGTG+AGG 0.650267 tig0005209:+18583 Msa1342140:CDS
ATGAATGTTATAGCTTGTGA+AGG 0.662961 tig0005209:+18653 Msa1342140:CDS
AAGGCTGTGATAGGATTGAG+AGG 0.704778 tig0005209:+18672 Msa1342140:CDS
GTTGTTTCGGAGAATCCGAG+GGG 0.740038 tig0005209:+18419 Msa1342140:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATAAACAAATTTCTCA+TGG + tig0005209:17047-17066 Msa1342140:CDS 15.0%
!! AGTAATTTATCAAATAATTC+TGG - tig0005209:17643-17662 Msa1342140:intergenic 15.0%
!!! TTTTATAAACAAATTTCTCA+TGG + tig0005209:17047-17066 Msa1342140:CDS 15.0%
!! AGTAATTTATCAAATAATTC+TGG - tig0005209:17643-17662 Msa1342140:intergenic 15.0%
!! TTATATTAACCAATTTCTCA+TGG + tig0005209:17143-17162 Msa1342140:CDS 20.0%
!! TTGGTACTAAAGTAAAAAAA+GGG + tig0005209:17668-17687 Msa1342140:CDS 20.0%
!! TGAAATATCATTACAAGAAA+TGG - tig0005209:17818-17837 Msa1342140:intergenic 20.0%
!! ATGCTATGAACAAATATATT+TGG - tig0005209:18476-18495 Msa1342140:intergenic 20.0%
!! CATGTTATAGATAAATTGAA+GGG + tig0005209:18764-18783 Msa1342140:CDS 20.0%
!! TTATATTAACCAATTTCTCA+TGG + tig0005209:17143-17162 Msa1342140:CDS 20.0%
!! TTGGTACTAAAGTAAAAAAA+GGG + tig0005209:17668-17687 Msa1342140:CDS 20.0%
!! TGAAATATCATTACAAGAAA+TGG - tig0005209:17818-17837 Msa1342140:intergenic 20.0%
!! ATGCTATGAACAAATATATT+TGG - tig0005209:18476-18495 Msa1342140:intergenic 20.0%
!! CATGTTATAGATAAATTGAA+GGG + tig0005209:18764-18783 Msa1342140:CDS 20.0%
! TATAATTGGATCAAGTTCAA+AGG - tig0005209:17422-17441 Msa1342140:intergenic 25.0%
! TAGTTGTATGAGTCTATAAT+TGG - tig0005209:17436-17455 Msa1342140:intergenic 25.0%
! TTTGATAAATTACTAGTCCT+TGG + tig0005209:17649-17668 Msa1342140:CDS 25.0%
!!! CTTTTTTTACTTTAGTACCA+AGG - tig0005209:17669-17688 Msa1342140:intergenic 25.0%
! CTTGGTACTAAAGTAAAAAA+AGG + tig0005209:17667-17686 Msa1342140:CDS 25.0%
! GAATTATCAAACAGATTCTA+TGG + tig0005209:17724-17743 Msa1342140:CDS 25.0%
!! TCTTAATCTGGTTTAATAAC+TGG - tig0005209:17849-17868 Msa1342140:intergenic 25.0%
!! TAATTGCAAGCTTTTCAAAA+GGG - tig0005209:18043-18062 Msa1342140:intergenic 25.0%
!! ATAATTGCAAGCTTTTCAAA+AGG - tig0005209:18044-18063 Msa1342140:intergenic 25.0%
!! AGTCTTCACATTATAGATTT+TGG + tig0005209:18107-18126 Msa1342140:CDS 25.0%
! TCAATGGTATTGCAAAAAAT+TGG + tig0005209:18303-18322 Msa1342140:CDS 25.0%
! CAATGGTATTGCAAAAAATT+GGG + tig0005209:18304-18323 Msa1342140:CDS 25.0%
!!! AAGTTGAGGATTTTAAGATA+AGG + tig0005209:18336-18355 Msa1342140:CDS 25.0%
!!! TGTTTTGGATTTGATTAAGA+AGG + tig0005209:18445-18464 Msa1342140:CDS 25.0%
! TTTGTTCATAGCATTGTTAA+TGG + tig0005209:18482-18501 Msa1342140:CDS 25.0%
! TTAAACCTTGTCACAAAAAA+AGG - tig0005209:18521-18540 Msa1342140:intergenic 25.0%
!!! TTTTTTTGTGACAAGGTTTA+AGG + tig0005209:18520-18539 Msa1342140:CDS 25.0%
! GCATGTTATAGATAAATTGA+AGG + tig0005209:18763-18782 Msa1342140:CDS 25.0%
!! TAATAGTGATTTTCTGTTTG+AGG + tig0005209:18808-18827 Msa1342140:CDS 25.0%
!! TGTTTGAGGTGAATAAAAAT+TGG + tig0005209:18822-18841 Msa1342140:CDS 25.0%
! AATAAAAATTGGATGCTACA+AGG + tig0005209:18833-18852 Msa1342140:CDS 25.0%
! TATAATTGGATCAAGTTCAA+AGG - tig0005209:17422-17441 Msa1342140:intergenic 25.0%
! TAGTTGTATGAGTCTATAAT+TGG - tig0005209:17436-17455 Msa1342140:intergenic 25.0%
! TTTGATAAATTACTAGTCCT+TGG + tig0005209:17649-17668 Msa1342140:CDS 25.0%
!!! CTTTTTTTACTTTAGTACCA+AGG - tig0005209:17669-17688 Msa1342140:intergenic 25.0%
! CTTGGTACTAAAGTAAAAAA+AGG + tig0005209:17667-17686 Msa1342140:CDS 25.0%
! GAATTATCAAACAGATTCTA+TGG + tig0005209:17724-17743 Msa1342140:CDS 25.0%
!! TCTTAATCTGGTTTAATAAC+TGG - tig0005209:17849-17868 Msa1342140:intergenic 25.0%
!! TAATTGCAAGCTTTTCAAAA+GGG - tig0005209:18043-18062 Msa1342140:intergenic 25.0%
!! ATAATTGCAAGCTTTTCAAA+AGG - tig0005209:18044-18063 Msa1342140:intergenic 25.0%
!! AGTCTTCACATTATAGATTT+TGG + tig0005209:18107-18126 Msa1342140:CDS 25.0%
! TCAATGGTATTGCAAAAAAT+TGG + tig0005209:18303-18322 Msa1342140:CDS 25.0%
! CAATGGTATTGCAAAAAATT+GGG + tig0005209:18304-18323 Msa1342140:CDS 25.0%
!!! AAGTTGAGGATTTTAAGATA+AGG + tig0005209:18336-18355 Msa1342140:CDS 25.0%
!!! TGTTTTGGATTTGATTAAGA+AGG + tig0005209:18445-18464 Msa1342140:CDS 25.0%
! TTTGTTCATAGCATTGTTAA+TGG + tig0005209:18482-18501 Msa1342140:CDS 25.0%
! TTAAACCTTGTCACAAAAAA+AGG - tig0005209:18521-18540 Msa1342140:intergenic 25.0%
!!! TTTTTTTGTGACAAGGTTTA+AGG + tig0005209:18520-18539 Msa1342140:CDS 25.0%
! GCATGTTATAGATAAATTGA+AGG + tig0005209:18763-18782 Msa1342140:CDS 25.0%
!! TAATAGTGATTTTCTGTTTG+AGG + tig0005209:18808-18827 Msa1342140:CDS 25.0%
!! TGTTTGAGGTGAATAAAAAT+TGG + tig0005209:18822-18841 Msa1342140:CDS 25.0%
! AATAAAAATTGGATGCTACA+AGG + tig0005209:18833-18852 Msa1342140:CDS 25.0%
! GTTAATATAACCAAGAGCAT+TGG - tig0005209:17133-17152 Msa1342140:intergenic 30.0%
!!! AAATTTGGTTTTGTTGATGC+TGG - tig0005209:17347-17366 Msa1342140:intergenic 30.0%
AACTATAATCACTGATGTCA+GGG - tig0005209:17378-17397 Msa1342140:intergenic 30.0%
AAACTATAATCACTGATGTC+AGG - tig0005209:17379-17398 Msa1342140:intergenic 30.0%
AATTGAGAAACAAAGTTTGG+AGG - tig0005209:17499-17518 Msa1342140:intergenic 30.0%
TCGAATTGAGAAACAAAGTT+TGG - tig0005209:17502-17521 Msa1342140:intergenic 30.0%
TCTTAATTACCTCATGAGAA+GGG - tig0005209:17537-17556 Msa1342140:intergenic 30.0%
CAAACAGATTCTATGGTTAT+AGG + tig0005209:17731-17750 Msa1342140:CDS 30.0%
GAGAAGAATGTTTCTTAATC+TGG - tig0005209:17861-17880 Msa1342140:intergenic 30.0%
!! CACATTATAGATTTTGGTGT+TGG + tig0005209:18113-18132 Msa1342140:CDS 30.0%
!!! ATAGATTTTGGTGTTGGTTA+TGG + tig0005209:18119-18138 Msa1342140:CDS 30.0%
GATAAACGATGTATTAAACC+AGG - tig0005209:18155-18174 Msa1342140:intergenic 30.0%
GATAGATCTTCCAAATTTGT+TGG + tig0005209:18214-18233 Msa1342140:CDS 30.0%
! ATGAATGTTATAGCTTGTGA+AGG + tig0005209:18653-18672 Msa1342140:CDS 30.0%
!! TGGGTTTAAGTCTTTGAAAT+TGG + tig0005209:18736-18755 Msa1342140:CDS 30.0%
!! TTCTATTTGGTTCTTCTTGT+TGG + tig0005209:18870-18889 Msa1342140:CDS 30.0%
! GTTAATATAACCAAGAGCAT+TGG - tig0005209:17133-17152 Msa1342140:intergenic 30.0%
!!! AAATTTGGTTTTGTTGATGC+TGG - tig0005209:17347-17366 Msa1342140:intergenic 30.0%
AACTATAATCACTGATGTCA+GGG - tig0005209:17378-17397 Msa1342140:intergenic 30.0%
AAACTATAATCACTGATGTC+AGG - tig0005209:17379-17398 Msa1342140:intergenic 30.0%
AATTGAGAAACAAAGTTTGG+AGG - tig0005209:17499-17518 Msa1342140:intergenic 30.0%
TCGAATTGAGAAACAAAGTT+TGG - tig0005209:17502-17521 Msa1342140:intergenic 30.0%
TCTTAATTACCTCATGAGAA+GGG - tig0005209:17537-17556 Msa1342140:intergenic 30.0%
CAAACAGATTCTATGGTTAT+AGG + tig0005209:17731-17750 Msa1342140:CDS 30.0%
GAGAAGAATGTTTCTTAATC+TGG - tig0005209:17861-17880 Msa1342140:intergenic 30.0%
!! CACATTATAGATTTTGGTGT+TGG + tig0005209:18113-18132 Msa1342140:CDS 30.0%
!!! ATAGATTTTGGTGTTGGTTA+TGG + tig0005209:18119-18138 Msa1342140:CDS 30.0%
GATAAACGATGTATTAAACC+AGG - tig0005209:18155-18174 Msa1342140:intergenic 30.0%
GATAGATCTTCCAAATTTGT+TGG + tig0005209:18214-18233 Msa1342140:CDS 30.0%
! ATGAATGTTATAGCTTGTGA+AGG + tig0005209:18653-18672 Msa1342140:CDS 30.0%
!! TGGGTTTAAGTCTTTGAAAT+TGG + tig0005209:18736-18755 Msa1342140:CDS 30.0%
!! TTCTATTTGGTTCTTCTTGT+TGG + tig0005209:18870-18889 Msa1342140:CDS 30.0%
TTGATTCACACCATGAACAA+AGG + tig0005209:16995-17014 Msa1342140:CDS 35.0%
TGATTCACACCATGAACAAA+GGG + tig0005209:16996-17015 Msa1342140:CDS 35.0%
GAATTCTCTTCAACTGTTCT+TGG + tig0005209:17024-17043 Msa1342140:CDS 35.0%
AGTCTTCTTCCATGAGAAAT+TGG - tig0005209:17155-17174 Msa1342140:intergenic 35.0%
!! GAGGAATTGGAAGAGTATTT+GGG - tig0005209:17480-17499 Msa1342140:intergenic 35.0%
GAAACAAAGTTTGGAGGAAT+TGG - tig0005209:17493-17512 Msa1342140:intergenic 35.0%
GTCTTAATTACCTCATGAGA+AGG - tig0005209:17538-17557 Msa1342140:intergenic 35.0%
GAGAAAATGCTCTTCTTCAA+AGG - tig0005209:17566-17585 Msa1342140:intergenic 35.0%
!! TGAAAGCTTGTGTTTTCAAG+TGG - tig0005209:17694-17713 Msa1342140:intergenic 35.0%
TAGGAGACAAAGAAGTTATG+AGG + tig0005209:17750-17769 Msa1342140:CDS 35.0%
AAGAAGTTATGAGGAAGTTG+TGG + tig0005209:17759-17778 Msa1342140:CDS 35.0%
AAGAAACATTCTTCTCCAAC+AGG + tig0005209:17865-17884 Msa1342140:CDS 35.0%
CAAAGATTGGCACATTTCTT+TGG + tig0005209:17898-17917 Msa1342140:CDS 35.0%
CATCGTTTATCGAAAAGATC+TGG + tig0005209:18164-18183 Msa1342140:CDS 35.0%
TTCACTCTCTCCAACAAATT+TGG - tig0005209:18227-18246 Msa1342140:intergenic 35.0%
!! AATTTGTTGGAGAGAGTGAA+TGG + tig0005209:18227-18246 Msa1342140:CDS 35.0%
GCAATACCATTGAACTCAAA+AGG - tig0005209:18296-18315 Msa1342140:intergenic 35.0%
!! TTGGGAAAGTATCAAAGTTG+AGG + tig0005209:18322-18341 Msa1342140:CDS 35.0%
!!! ATGCACCTTTTTTTGTGACA+AGG + tig0005209:18513-18532 Msa1342140:CDS 35.0%
TAACAACAATGTTGAACGTG+AGG + tig0005209:18583-18602 Msa1342140:CDS 35.0%
!! TCCTAATAGGTTGATGTTTG+AGG + tig0005209:18607-18626 Msa1342140:CDS 35.0%
TCCTCAAACATCAACCTATT+AGG - tig0005209:18611-18630 Msa1342140:intergenic 35.0%
! TGATGTTTGAGGAAGAGTTT+TGG + tig0005209:18618-18637 Msa1342140:CDS 35.0%
! GATGTTTGAGGAAGAGTTTT+GGG + tig0005209:18619-18638 Msa1342140:CDS 35.0%
! ATGTTTGAGGAAGAGTTTTG+GGG + tig0005209:18620-18639 Msa1342140:CDS 35.0%
! CATATAGGCAATGGCATTTT+AGG + tig0005209:18702-18721 Msa1342140:CDS 35.0%
! ATTTTAGGCACATGGGAAAT+GGG + tig0005209:18717-18736 Msa1342140:CDS 35.0%
AAAATTGGATGCTACAAGGT+TGG + tig0005209:18837-18856 Msa1342140:CDS 35.0%
TTGATTCACACCATGAACAA+AGG + tig0005209:16995-17014 Msa1342140:CDS 35.0%
TGATTCACACCATGAACAAA+GGG + tig0005209:16996-17015 Msa1342140:CDS 35.0%
GAATTCTCTTCAACTGTTCT+TGG + tig0005209:17024-17043 Msa1342140:CDS 35.0%
AGTCTTCTTCCATGAGAAAT+TGG - tig0005209:17155-17174 Msa1342140:intergenic 35.0%
!! GAGGAATTGGAAGAGTATTT+GGG - tig0005209:17480-17499 Msa1342140:intergenic 35.0%
GAAACAAAGTTTGGAGGAAT+TGG - tig0005209:17493-17512 Msa1342140:intergenic 35.0%
GTCTTAATTACCTCATGAGA+AGG - tig0005209:17538-17557 Msa1342140:intergenic 35.0%
GAGAAAATGCTCTTCTTCAA+AGG - tig0005209:17566-17585 Msa1342140:intergenic 35.0%
!! TGAAAGCTTGTGTTTTCAAG+TGG - tig0005209:17694-17713 Msa1342140:intergenic 35.0%
TAGGAGACAAAGAAGTTATG+AGG + tig0005209:17750-17769 Msa1342140:CDS 35.0%
AAGAAGTTATGAGGAAGTTG+TGG + tig0005209:17759-17778 Msa1342140:CDS 35.0%
AAGAAACATTCTTCTCCAAC+AGG + tig0005209:17865-17884 Msa1342140:CDS 35.0%
CAAAGATTGGCACATTTCTT+TGG + tig0005209:17898-17917 Msa1342140:CDS 35.0%
CATCGTTTATCGAAAAGATC+TGG + tig0005209:18164-18183 Msa1342140:CDS 35.0%
TTCACTCTCTCCAACAAATT+TGG - tig0005209:18227-18246 Msa1342140:intergenic 35.0%
!! AATTTGTTGGAGAGAGTGAA+TGG + tig0005209:18227-18246 Msa1342140:CDS 35.0%
GCAATACCATTGAACTCAAA+AGG - tig0005209:18296-18315 Msa1342140:intergenic 35.0%
!! TTGGGAAAGTATCAAAGTTG+AGG + tig0005209:18322-18341 Msa1342140:CDS 35.0%
!!! ATGCACCTTTTTTTGTGACA+AGG + tig0005209:18513-18532 Msa1342140:CDS 35.0%
TAACAACAATGTTGAACGTG+AGG + tig0005209:18583-18602 Msa1342140:CDS 35.0%
!! TCCTAATAGGTTGATGTTTG+AGG + tig0005209:18607-18626 Msa1342140:CDS 35.0%
TCCTCAAACATCAACCTATT+AGG - tig0005209:18611-18630 Msa1342140:intergenic 35.0%
! TGATGTTTGAGGAAGAGTTT+TGG + tig0005209:18618-18637 Msa1342140:CDS 35.0%
! GATGTTTGAGGAAGAGTTTT+GGG + tig0005209:18619-18638 Msa1342140:CDS 35.0%
! ATGTTTGAGGAAGAGTTTTG+GGG + tig0005209:18620-18639 Msa1342140:CDS 35.0%
! CATATAGGCAATGGCATTTT+AGG + tig0005209:18702-18721 Msa1342140:CDS 35.0%
! ATTTTAGGCACATGGGAAAT+GGG + tig0005209:18717-18736 Msa1342140:CDS 35.0%
AAAATTGGATGCTACAAGGT+TGG + tig0005209:18837-18856 Msa1342140:CDS 35.0%
ATTCACTCTCCCTTTGTTCA+TGG - tig0005209:17008-17027 Msa1342140:intergenic 40.0%
CATGGAAGATGATGACATAG+AGG + tig0005209:17065-17084 Msa1342140:CDS 40.0%
ACTCTTCATGTTCATGGTGT+TGG - tig0005209:17107-17126 Msa1342140:intergenic 40.0%
TGGAAGACTCTTCATGTTCA+TGG - tig0005209:17113-17132 Msa1342140:intergenic 40.0%
GTTGAAGAGCAAAGGAATCT+TGG - tig0005209:17200-17219 Msa1342140:intergenic 40.0%
! CTCAGTAAGTTGAAGAGCAA+AGG - tig0005209:17208-17227 Msa1342140:intergenic 40.0%
!!! TTGGTTTTGTTGATGCTGGA+TGG - tig0005209:17343-17362 Msa1342140:intergenic 40.0%
GAGTATTTGGGAGTGGAAAA+GGG - tig0005209:17468-17487 Msa1342140:intergenic 40.0%
! AGAGTATTTGGGAGTGGAAA+AGG - tig0005209:17469-17488 Msa1342140:intergenic 40.0%
!! ATTGGAAGAGTATTTGGGAG+TGG - tig0005209:17475-17494 Msa1342140:intergenic 40.0%
!! GGAGGAATTGGAAGAGTATT+TGG - tig0005209:17481-17500 Msa1342140:intergenic 40.0%
! AACTGTTTTCCCTTCTCATG+AGG + tig0005209:17525-17544 Msa1342140:CDS 40.0%
ATGAGGAAGTTGTGGATTTG+AGG + tig0005209:17767-17786 Msa1342140:CDS 40.0%
!! AGGTGATGGAACTCAAAGAT+TGG + tig0005209:17885-17904 Msa1342140:CDS 40.0%
ATCTGCAGCAGATTTCTTCT+TGG - tig0005209:17985-18004 Msa1342140:intergenic 40.0%
GAAGAAATCTGCTGCAGATA+TGG + tig0005209:17986-18005 Msa1342140:intron 40.0%
GGCATGCTGATGAATAAACT+TGG - tig0005209:18022-18041 Msa1342140:intergenic 40.0%
!! GTGTTGGTTATGGTTTCAAG+TGG + tig0005209:18129-18148 Msa1342140:CDS 40.0%
CGTTTATCGAAAAGATCTGG+CGG + tig0005209:18167-18186 Msa1342140:CDS 40.0%
GTTTATCGAAAAGATCTGGC+GGG + tig0005209:18168-18187 Msa1342140:CDS 40.0%
ATCCCTGTGATCCTCAATTT+GGG - tig0005209:18197-18216 Msa1342140:intergenic 40.0%
TATCCCTGTGATCCTCAATT+TGG - tig0005209:18198-18217 Msa1342140:intergenic 40.0%
GCAACTTATTGCGAACGTTT+CGG + tig0005209:18266-18285 Msa1342140:CDS 40.0%
!!! GGTGTTCCTTTTGAGTTCAA+TGG + tig0005209:18287-18306 Msa1342140:CDS 40.0%
ACCTGATGAGACAGTTGTTT+CGG + tig0005209:18406-18425 Msa1342140:CDS 40.0%
TTGAACGTGAGGATCCTAAT+AGG + tig0005209:18594-18613 Msa1342140:CDS 40.0%
!! TGTTTGAGGAAGAGTTTTGG+GGG + tig0005209:18621-18640 Msa1342140:CDS 40.0%
! CAATGGCATTTTAGGCACAT+GGG + tig0005209:18710-18729 Msa1342140:CDS 40.0%
! CATTTTAGGCACATGGGAAA+TGG + tig0005209:18716-18735 Msa1342140:CDS 40.0%
TGGAAGGGTAGAGTTCTATT+TGG + tig0005209:18857-18876 Msa1342140:CDS 40.0%
ATTCACTCTCCCTTTGTTCA+TGG - tig0005209:17008-17027 Msa1342140:intergenic 40.0%
CATGGAAGATGATGACATAG+AGG + tig0005209:17065-17084 Msa1342140:CDS 40.0%
ACTCTTCATGTTCATGGTGT+TGG - tig0005209:17107-17126 Msa1342140:intergenic 40.0%
TGGAAGACTCTTCATGTTCA+TGG - tig0005209:17113-17132 Msa1342140:intergenic 40.0%
GTTGAAGAGCAAAGGAATCT+TGG - tig0005209:17200-17219 Msa1342140:intergenic 40.0%
! CTCAGTAAGTTGAAGAGCAA+AGG - tig0005209:17208-17227 Msa1342140:intergenic 40.0%
!!! TTGGTTTTGTTGATGCTGGA+TGG - tig0005209:17343-17362 Msa1342140:intergenic 40.0%
GAGTATTTGGGAGTGGAAAA+GGG - tig0005209:17468-17487 Msa1342140:intergenic 40.0%
! AGAGTATTTGGGAGTGGAAA+AGG - tig0005209:17469-17488 Msa1342140:intergenic 40.0%
!! ATTGGAAGAGTATTTGGGAG+TGG - tig0005209:17475-17494 Msa1342140:intergenic 40.0%
!! GGAGGAATTGGAAGAGTATT+TGG - tig0005209:17481-17500 Msa1342140:intergenic 40.0%
! AACTGTTTTCCCTTCTCATG+AGG + tig0005209:17525-17544 Msa1342140:CDS 40.0%
ATGAGGAAGTTGTGGATTTG+AGG + tig0005209:17767-17786 Msa1342140:CDS 40.0%
!! AGGTGATGGAACTCAAAGAT+TGG + tig0005209:17885-17904 Msa1342140:CDS 40.0%
ATCTGCAGCAGATTTCTTCT+TGG - tig0005209:17985-18004 Msa1342140:intergenic 40.0%
GAAGAAATCTGCTGCAGATA+TGG + tig0005209:17986-18005 Msa1342140:intron 40.0%
GGCATGCTGATGAATAAACT+TGG - tig0005209:18022-18041 Msa1342140:intergenic 40.0%
!! GTGTTGGTTATGGTTTCAAG+TGG + tig0005209:18129-18148 Msa1342140:CDS 40.0%
CGTTTATCGAAAAGATCTGG+CGG + tig0005209:18167-18186 Msa1342140:CDS 40.0%
GTTTATCGAAAAGATCTGGC+GGG + tig0005209:18168-18187 Msa1342140:CDS 40.0%
ATCCCTGTGATCCTCAATTT+GGG - tig0005209:18197-18216 Msa1342140:intergenic 40.0%
TATCCCTGTGATCCTCAATT+TGG - tig0005209:18198-18217 Msa1342140:intergenic 40.0%
GCAACTTATTGCGAACGTTT+CGG + tig0005209:18266-18285 Msa1342140:CDS 40.0%
!!! GGTGTTCCTTTTGAGTTCAA+TGG + tig0005209:18287-18306 Msa1342140:CDS 40.0%
ACCTGATGAGACAGTTGTTT+CGG + tig0005209:18406-18425 Msa1342140:CDS 40.0%
TTGAACGTGAGGATCCTAAT+AGG + tig0005209:18594-18613 Msa1342140:CDS 40.0%
!! TGTTTGAGGAAGAGTTTTGG+GGG + tig0005209:18621-18640 Msa1342140:CDS 40.0%
! CAATGGCATTTTAGGCACAT+GGG + tig0005209:18710-18729 Msa1342140:CDS 40.0%
! CATTTTAGGCACATGGGAAA+TGG + tig0005209:18716-18735 Msa1342140:CDS 40.0%
TGGAAGGGTAGAGTTCTATT+TGG + tig0005209:18857-18876 Msa1342140:CDS 40.0%
GAAGAGTCTTCCAATGCTCT+TGG + tig0005209:17120-17139 Msa1342140:CDS 45.0%
GTCAGGGCTATGCACAAATT+TGG - tig0005209:17362-17381 Msa1342140:intergenic 45.0%
CATTCTTCTCCAACAGGTGA+TGG + tig0005209:17871-17890 Msa1342140:CDS 45.0%
! CTTTGAGTTCCATCACCTGT+TGG - tig0005209:17883-17902 Msa1342140:intergenic 45.0%
CACCCAAATTGAGGATCACA+GGG + tig0005209:18192-18211 Msa1342140:CDS 45.0%
TTGGAGAGAGTGAATGGAAC+AGG + tig0005209:18233-18252 Msa1342140:CDS 45.0%
GAGTGAATGGAACAGGTCTT+AGG + tig0005209:18240-18259 Msa1342140:CDS 45.0%
TCCGAAACAACTGTCTCATC+AGG - tig0005209:18410-18429 Msa1342140:intergenic 45.0%
! AGTTGTTTCGGAGAATCCGA+GGG + tig0005209:18418-18437 Msa1342140:CDS 45.0%
AAATCCAAAACAGCACCCCT+CGG - tig0005209:18437-18456 Msa1342140:intergenic 45.0%
! TAGCTTGTGAAGGCTGTGAT+AGG + tig0005209:18663-18682 Msa1342140:CDS 45.0%
AAGGCTGTGATAGGATTGAG+AGG + tig0005209:18672-18691 Msa1342140:CDS 45.0%
TTGAGAGGCCAGAGACATAT+AGG + tig0005209:18687-18706 Msa1342140:CDS 45.0%
TGCCATTGCCTATATGTCTC+TGG - tig0005209:18698-18717 Msa1342140:intergenic 45.0%
! GCAATGGCATTTTAGGCACA+TGG + tig0005209:18709-18728 Msa1342140:CDS 45.0%
TTGGATGCTACAAGGTTGGA+AGG + tig0005209:18841-18860 Msa1342140:CDS 45.0%
TGGATGCTACAAGGTTGGAA+GGG + tig0005209:18842-18861 Msa1342140:CDS 45.0%
GAAGAGTCTTCCAATGCTCT+TGG + tig0005209:17120-17139 Msa1342140:CDS 45.0%
GTCAGGGCTATGCACAAATT+TGG - tig0005209:17362-17381 Msa1342140:intergenic 45.0%
CATTCTTCTCCAACAGGTGA+TGG + tig0005209:17871-17890 Msa1342140:CDS 45.0%
! CTTTGAGTTCCATCACCTGT+TGG - tig0005209:17883-17902 Msa1342140:intergenic 45.0%
CACCCAAATTGAGGATCACA+GGG + tig0005209:18192-18211 Msa1342140:CDS 45.0%
TTGGAGAGAGTGAATGGAAC+AGG + tig0005209:18233-18252 Msa1342140:CDS 45.0%
GAGTGAATGGAACAGGTCTT+AGG + tig0005209:18240-18259 Msa1342140:CDS 45.0%
TCCGAAACAACTGTCTCATC+AGG - tig0005209:18410-18429 Msa1342140:intergenic 45.0%
! AGTTGTTTCGGAGAATCCGA+GGG + tig0005209:18418-18437 Msa1342140:CDS 45.0%
AAATCCAAAACAGCACCCCT+CGG - tig0005209:18437-18456 Msa1342140:intergenic 45.0%
! TAGCTTGTGAAGGCTGTGAT+AGG + tig0005209:18663-18682 Msa1342140:CDS 45.0%
AAGGCTGTGATAGGATTGAG+AGG + tig0005209:18672-18691 Msa1342140:CDS 45.0%
TTGAGAGGCCAGAGACATAT+AGG + tig0005209:18687-18706 Msa1342140:CDS 45.0%
TGCCATTGCCTATATGTCTC+TGG - tig0005209:18698-18717 Msa1342140:intergenic 45.0%
! GCAATGGCATTTTAGGCACA+TGG + tig0005209:18709-18728 Msa1342140:CDS 45.0%
TTGGATGCTACAAGGTTGGA+AGG + tig0005209:18841-18860 Msa1342140:CDS 45.0%
TGGATGCTACAAGGTTGGAA+GGG + tig0005209:18842-18861 Msa1342140:CDS 45.0%
AGAAGACGACGACGAAGAAG+TGG - tig0005209:17316-17335 Msa1342140:intergenic 50.0%
GCACTTGAAGCACGTTTAGC+AGG + tig0005209:17925-17944 Msa1342140:CDS 50.0%
GAAGCACGTTTAGCAGGAAC+TGG + tig0005209:17931-17950 Msa1342140:CDS 50.0%
! GGTTATGGTTTCAAGTGGCC+TGG + tig0005209:18134-18153 Msa1342140:CDS 50.0%
CCTGTGATCCTCAATTTGGG+TGG - tig0005209:18194-18213 Msa1342140:intergenic 50.0%
CCACCCAAATTGAGGATCAC+AGG + tig0005209:18191-18210 Msa1342140:CDS 50.0%
! CAGTTGTTTCGGAGAATCCG+AGG + tig0005209:18417-18436 Msa1342140:CDS 50.0%
! GTTGTTTCGGAGAATCCGAG+GGG + tig0005209:18419-18438 Msa1342140:CDS 50.0%
!!! TGAGGAAGAGTTTTGGGGGA+AGG + tig0005209:18625-18644 Msa1342140:CDS 50.0%
GGCCAGAGACATATAGGCAA+TGG + tig0005209:18693-18712 Msa1342140:CDS 50.0%
AGAAGACGACGACGAAGAAG+TGG - tig0005209:17316-17335 Msa1342140:intergenic 50.0%
GCACTTGAAGCACGTTTAGC+AGG + tig0005209:17925-17944 Msa1342140:CDS 50.0%
GAAGCACGTTTAGCAGGAAC+TGG + tig0005209:17931-17950 Msa1342140:CDS 50.0%
! GGTTATGGTTTCAAGTGGCC+TGG + tig0005209:18134-18153 Msa1342140:CDS 50.0%
CCTGTGATCCTCAATTTGGG+TGG - tig0005209:18194-18213 Msa1342140:intergenic 50.0%
CCACCCAAATTGAGGATCAC+AGG + tig0005209:18191-18210 Msa1342140:CDS 50.0%
! CAGTTGTTTCGGAGAATCCG+AGG + tig0005209:18417-18436 Msa1342140:CDS 50.0%
! GTTGTTTCGGAGAATCCGAG+GGG + tig0005209:18419-18438 Msa1342140:CDS 50.0%
!!! TGAGGAAGAGTTTTGGGGGA+AGG + tig0005209:18625-18644 Msa1342140:CDS 50.0%
GGCCAGAGACATATAGGCAA+TGG + tig0005209:18693-18712 Msa1342140:CDS 50.0%
GAAGAAGTGGAGGAAGGAGG+AGG - tig0005209:17303-17322 Msa1342140:intergenic 55.0%
GACGAAGAAGTGGAGGAAGG+AGG - tig0005209:17306-17325 Msa1342140:intergenic 55.0%
GACGACGAAGAAGTGGAGGA+AGG - tig0005209:17309-17328 Msa1342140:intergenic 55.0%
AGACGACGACGAAGAAGTGG+AGG - tig0005209:17313-17332 Msa1342140:intergenic 55.0%
!!! GAATCCGAGGGGTGCTGTTT+TGG + tig0005209:18430-18449 Msa1342140:CDS 55.0%
GAAGAAGTGGAGGAAGGAGG+AGG - tig0005209:17303-17322 Msa1342140:intergenic 55.0%
GACGAAGAAGTGGAGGAAGG+AGG - tig0005209:17306-17325 Msa1342140:intergenic 55.0%
GACGACGAAGAAGTGGAGGA+AGG - tig0005209:17309-17328 Msa1342140:intergenic 55.0%
AGACGACGACGAAGAAGTGG+AGG - tig0005209:17313-17332 Msa1342140:intergenic 55.0%
!!! GAATCCGAGGGGTGCTGTTT+TGG + tig0005209:18430-18449 Msa1342140:CDS 55.0%
GTAGCAGTAGGAGGAGGAGG+AGG - tig0005209:17267-17286 Msa1342140:intergenic 60.0%
GCAGTAGCAGTAGGAGGAGG+AGG - tig0005209:17270-17289 Msa1342140:intergenic 60.0%
GCAGCAGTAGCAGTAGGAGG+AGG - tig0005209:17273-17292 Msa1342140:intergenic 60.0%
GCAGCAGCAGTAGCAGTAGG+AGG - tig0005209:17276-17295 Msa1342140:intergenic 60.0%
GGAGCAGCAGCAGTAGCAGT+AGG - tig0005209:17279-17298 Msa1342140:intergenic 60.0%
GAAGTGGAGGAAGGAGGAGG+AGG - tig0005209:17300-17319 Msa1342140:intergenic 60.0%
GTAGCAGTAGGAGGAGGAGG+AGG - tig0005209:17267-17286 Msa1342140:intergenic 60.0%
GCAGTAGCAGTAGGAGGAGG+AGG - tig0005209:17270-17289 Msa1342140:intergenic 60.0%
GCAGCAGTAGCAGTAGGAGG+AGG - tig0005209:17273-17292 Msa1342140:intergenic 60.0%
GCAGCAGCAGTAGCAGTAGG+AGG - tig0005209:17276-17295 Msa1342140:intergenic 60.0%
GGAGCAGCAGCAGTAGCAGT+AGG - tig0005209:17279-17298 Msa1342140:intergenic 60.0%
GAAGTGGAGGAAGGAGGAGG+AGG - tig0005209:17300-17319 Msa1342140:intergenic 60.0%
GTAGGAGGAGGAGGAGGAGG+AGG - tig0005209:17261-17280 Msa1342140:intergenic 65.0%
GCAGTAGGAGGAGGAGGAGG+AGG - tig0005209:17264-17283 Msa1342140:intergenic 65.0%
! CTGGCGGGCCACCCAAATTG+AGG + tig0005209:18183-18202 Msa1342140:CDS 65.0%
GTAGGAGGAGGAGGAGGAGG+AGG - tig0005209:17261-17280 Msa1342140:intergenic 65.0%
GCAGTAGGAGGAGGAGGAGG+AGG - tig0005209:17264-17283 Msa1342140:intergenic 65.0%
! CTGGCGGGCCACCCAAATTG+AGG + tig0005209:18183-18202 Msa1342140:CDS 65.0%
Chromosome Type Strat End Strand Name
tig0005209 gene 16979 18904 16979 ID=Msa1342140;Name=Msa1342140
tig0005209 mRNA 16979 18904 16979 ID=Msa1342140-mRNA-1;Parent=Msa1342140;Name=Msa1342140-mRNA-1;_AED=0.04;_eAED=0.05;_QI=0|0|0|1|1|1|3|0|588
tig0005209 exon 16979 17366 16979 ID=Msa1342140-mRNA-1:exon:3478;Parent=Msa1342140-mRNA-1
tig0005209 exon 17443 17952 17443 ID=Msa1342140-mRNA-1:exon:3479;Parent=Msa1342140-mRNA-1
tig0005209 exon 18036 18904 18036 ID=Msa1342140-mRNA-1:exon:3480;Parent=Msa1342140-mRNA-1
tig0005209 CDS 16979 17366 16979 ID=Msa1342140-mRNA-1:cds;Parent=Msa1342140-mRNA-1
tig0005209 CDS 17443 17952 17443 ID=Msa1342140-mRNA-1:cds;Parent=Msa1342140-mRNA-1
tig0005209 CDS 18036 18904 18036 ID=Msa1342140-mRNA-1:cds;Parent=Msa1342140-mRNA-1
Gene Sequence

>Msa1342140

ATGGACAAAAGAGGTATTGATTCACACCATGAACAAAGGGAGAGTGAATTCTCTTCAACTGTTCTTGGTTTTATAAACAAATTTCTCATGGAAGATGATGACATAGAGGAAGACTACAATATGTTCCAACACCATGAACATGAAGAGTCTTCCAATGCTCTTGGTTATATTAACCAATTTCTCATGGAAGAAGACTTTGAAAAAGAATACACTATGTTCCAAGATTCCTTTGCTCTTCAACTTACTGAGAAATCATTTCATGATGTTATTTCTCACACTCCTCCTCCTCCTCCTCCTCCTACTGCTACTGCTGCTGCTCCTCCTCCTCCTTCCTCCACTTCTTCGTCGTCGTCTTCTTCTTCCATCCAGCATCAACAAAACCAAATTTACTCATACAACTACAATTACAACCCTTTTCCACTCCCAAATACTCTTCCAATTCCTCCAAACTTTGTTTCTCAATTCGACTCAACTGTTTTCCCTTCTCATGAGGTAATTAAGACAGAAACCTTTGAAGAAGAGCATTTTCTCAATGTGTCACAAAATGAGTCAGAACAAGTATATGTAGATGATAACAGTGAGTTACCAGAATTATTTGATAAATTACTAGTCCTTGGTACTAAAGTAAAAAAAGGGCCACTTGAAAACACAAGCTTTCAGCAGAATGAAGAATTATCAAACAGATTCTATGGTTATAGGAGACAAAGAAGTTATGAGGAAGTTGTGGATTTGAGGACACTATTGATGCTGTGTGCACAATCCATTTCTTGTAATGATATTTCAAATGCTAACCAGTTATTAAACCAGATTAAGAAACATTCTTCTCCAACAGGTGATGGAACTCAAAGATTGGCACATTTCTTTGGAAATGCACTTGAAGCACGTTTAGCAGGAACTGCATGCCCTTTTGAAAAGCTTGCAATTATGTTCTCAAACAATGCGATTTTTAATGTAGCAAAAGAAACAAAAAGTCTTCACATTATAGATTTTGGTGTTGGTTATGGTTTCAAGTGGCCTGGTTTAATACATCGTTTATCGAAAAGATCTGGCGGGCCACCCAAATTGAGGATCACAGGGATAGATCTTCCAAATTTGTTGGAGAGAGTGAATGGAACAGGTCTTAGGCTTGCAACTTATTGCGAACGTTTCGGTGTTCCTTTTGAGTTCAATGGTATTGCAAAAAATTGGGAAAGTATCAAAGTTGAGGATTTTAAGATAAGGAAAGATGAGTTTGTTGCTGTGAATTGTTATTTTAAACTTGAGAATCTACCTGATGAGACAGTTGTTTCGGAGAATCCGAGGGGTGCTGTTTTGGATTTGATTAAGAAGGCAAATCCAAATATATTTGTTCATAGCATTGTTAATGGTTGTTATGATGCACCTTTTTTTGTGACAAGGTTTAAGGAAGCTGTTTTTCATTACTCAGCATTGTTTGATATGCTTGATAACAACAATGTTGAACGTGAGGATCCTAATAGGTTGATGTTTGAGGAAGAGTTTTGGGGGAAGGATATAATGAATGTTATAGCTTGTGAAGGCTGTGATAGGATTGAGAGGCCAGAGACATATAGGCAATGGCATTTTAGGCACATGGGAAATGGGTTTAAGTCTTTGAAATTGGATAAGCATGTTATAGATAAATTGAAGGGTAAGTTGAGAGATGATGCATATAATAGTGATTTTCTGTTTGAGGTGAATAAAAATTGGATGCTACAAGGTTGGAAGGGTAGAGTTCTATTTGGTTCTTCTTGTTGGATTCCAGCATAG
Protein sequence

>Msa1342140

MDKRGIDSHHEQRESEFSSTVLGFINKFLMEDDDIEEDYNMFQHHEHEESSNALGYINQFLMEEDFEKEYTMFQDSFALQLTEKSFHDVISHTPPPPPPPTATAAAPPPPSSTSSSSSSSSIQHQQNQIYSYNYNYNPFPLPNTLPIPPNFVSQFDSTVFPSHEVIKTETFEEEHFLNVSQNESEQVYVDDNSELPELFDKLLVLGTKVKKGPLENTSFQQNEELSNRFYGYRRQRSYEEVVDLRTLLMLCAQSISCNDISNANQLLNQIKKHSSPTGDGTQRLAHFFGNALEARLAGTACPFEKLAIMFSNNAIFNVAKETKSLHIIDFGVGYGFKWPGLIHRLSKRSGGPPKLRITGIDLPNLLERVNGTGLRLATYCERFGVPFEFNGIAKNWESIKVEDFKIRKDEFVAVNCYFKLENLPDETVVSENPRGAVLDLIKKANPNIFVHSIVNGCYDAPFFVTRFKEAVFHYSALFDMLDNNNVEREDPNRLMFEEEFWGKDIMNVIACEGCDRIERPETYRQWHFRHMGNGFKSLKLDKHVIDKLKGKLRDDAYNSDFLFEVNKNWMLQGWKGRVLFGSSCWIPA*