AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1342190

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1342190 MtrunA17_Chr2g0287651 42.308 624 330 4 94 690 68 688 6.09e-178 538
Msa1342190 MtrunA17_Chr1g0203051 33.446 592 356 7 64 621 34 621 2.35e-106 343
Msa1342190 MtrunA17_Chr1g0202341 30.680 603 367 10 100 668 50 635 1.67e-88 296
Msa1342190 MtrunA17_Chr5g0448761 30.877 570 350 9 105 636 64 627 4.54e-87 295
Msa1342190 MtrunA17_Chr8g0363841 29.144 549 366 8 147 680 88 628 4.99e-80 273
Msa1342190 MtrunA17_Chr2g0324011 28.356 596 386 6 95 655 4 593 2.18e-79 269
Msa1342190 MtrunA17_Chr2g0296781 29.542 633 391 14 105 694 1 621 2.79e-79 273
Msa1342190 MtrunA17_Chr6g0477261 34.813 428 264 6 218 634 22 445 5.09e-78 267
Msa1342190 MtrunA17_Chr5g0441581 28.670 579 373 11 138 697 85 642 1.24e-77 267
Msa1342190 MtrunA17_Chr3g0082121 29.654 607 377 12 104 677 46 635 1.83e-75 261
Msa1342190 MtrunA17_Chr1g0198761 30.156 577 349 10 107 638 53 620 1.21e-73 258
Msa1342190 MtrunA17_Chr1g0207551 31.071 560 348 10 105 634 38 589 1.35e-73 258
Msa1342190 MtrunA17_Chr3g0080351 27.564 624 362 12 96 672 71 651 4.80e-70 249
Msa1342190 MtrunA17_Chr1g0203721 26.763 624 413 11 107 697 69 681 2.41e-68 245
Msa1342190 MtrunA17_Chr2g0329031 25.446 617 390 10 88 667 1 584 2.39e-67 239
Msa1342190 MtrunA17_Chr1g0196541 29.825 570 346 14 105 634 1 556 2.51e-67 239
Msa1342190 MtrunA17_Chr3g0118611 29.862 509 325 11 184 682 56 542 8.88e-65 233
Msa1342190 MtrunA17_Chr5g0448511 30.653 398 266 5 244 635 5 398 9.19e-65 228
Msa1342190 MtrunA17_Chr6g0458391 26.455 567 350 11 105 634 229 765 7.23e-64 230
Msa1342190 MtrunA17_Chr5g0440451 27.451 612 397 15 105 682 47 645 8.58e-62 226
Msa1342190 MtrunA17_Chr2g0276841 26.240 625 408 13 107 694 76 684 2.46e-57 210
Msa1342190 MtrunA17_Chr2g0291581 26.512 562 366 11 105 634 75 621 5.25e-56 206
Msa1342190 MtrunA17_Chr2g0290391 26.068 679 412 19 84 703 35 682 7.55e-56 206
Msa1342190 MtrunA17_Chr5g0431001 31.591 421 243 10 107 485 67 484 1.13e-55 201
Msa1342190 MtrunA17_Chr2g0291591 29.109 505 317 9 82 553 39 535 1.30e-55 202
Msa1342190 MtrunA17_Chr2g0287061 26.633 597 382 15 106 682 188 748 1.41e-52 197
Msa1342190 MtrunA17_Chr2g0294841 27.352 574 357 13 107 635 51 609 5.47e-52 195
Msa1342190 MtrunA17_Chr1g0164591 32.459 305 192 3 165 464 12 307 1.22e-50 181
Msa1342190 MtrunA17_Chr2g0308841 33.051 236 156 1 409 644 4 237 3.30e-38 144
Msa1342190 MtrunA17_Chr7g0258861 28.772 285 161 5 105 355 14 290 7.03e-31 124
Msa1342190 MtrunA17_Chr1g0149131 34.545 110 67 1 356 460 1 110 3.94e-15 72.8
Msa1342190 MtrunA17_Chr8g0340801 33.945 109 70 1 186 294 1 107 3.22e-14 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1342190 AT4G38180.1 30.261 651 403 14 23 638 4 638 1.42e-85 291
Msa1342190 AT4G15090.1 30.000 670 416 16 53 684 2 656 3.78e-83 286
Msa1342190 AT4G15090.5 30.000 670 416 16 53 684 2 656 3.78e-83 286
Msa1342190 AT4G15090.3 30.000 670 416 16 53 684 2 656 3.78e-83 286
Msa1342190 AT4G15090.2 30.000 670 416 16 53 684 2 656 3.78e-83 286
Msa1342190 AT4G15090.4 30.000 670 416 16 53 684 2 656 3.78e-83 286
Msa1342190 AT3G22170.2 26.599 688 418 14 52 693 30 676 4.39e-70 249
Msa1342190 AT3G22170.1 26.599 688 418 14 52 693 30 676 4.39e-70 249
Msa1342190 AT2G27110.2 26.521 641 407 14 59 676 14 613 1.94e-66 239
Msa1342190 AT2G27110.1 26.521 641 407 14 59 676 14 613 1.94e-66 239
Msa1342190 AT2G27110.3 30.324 432 281 7 251 676 51 468 2.19e-62 225
Msa1342190 AT1G76320.2 26.353 573 356 12 105 637 1 547 1.62e-60 220
Msa1342190 AT1G76320.1 26.353 573 356 12 105 637 1 547 1.69e-60 220
Msa1342190 AT1G76320.4 26.353 573 356 12 105 637 1 547 1.69e-60 220
Msa1342190 AT1G76320.3 26.353 573 356 12 105 637 1 547 2.26e-60 218
Msa1342190 AT4G19990.1 29.825 399 272 4 246 638 110 506 2.32e-59 216
Msa1342190 AT4G19990.6 29.825 399 272 4 246 638 167 563 4.92e-59 216
Msa1342190 AT4G19990.2 29.825 399 272 4 246 638 167 563 4.92e-59 216
Msa1342190 AT4G19990.3 29.825 399 272 4 246 638 167 563 5.28e-59 216
Msa1342190 AT4G19990.4 29.825 399 272 4 246 638 167 563 5.28e-59 216
Msa1342190 AT1G52520.1 26.714 569 369 11 105 639 89 643 5.66e-59 215
Msa1342190 AT4G19990.5 29.825 399 272 4 246 638 167 563 5.74e-59 216
Msa1342190 AT4G19990.7 29.825 399 272 4 246 638 181 577 7.35e-59 216
Msa1342190 AT3G06250.2 26.654 544 352 9 105 634 194 704 3.04e-58 214
Msa1342190 AT3G06250.1 26.654 544 352 9 105 634 194 704 3.04e-58 214
Msa1342190 AT3G06250.3 26.654 544 352 9 105 634 194 704 3.04e-58 214
Msa1342190 AT1G80010.1 27.005 611 380 17 80 643 79 670 5.36e-58 213
Msa1342190 AT5G28530.1 27.383 577 364 12 107 640 61 625 9.66e-57 208
Msa1342190 AT1G10240.2 26.182 592 377 10 107 655 54 628 1.96e-56 207
Msa1342190 AT1G10240.1 26.182 592 377 10 107 655 54 628 1.96e-56 207
Msa1342190 AT5G28530.3 27.036 577 362 12 107 640 61 621 2.18e-55 204
Msa1342190 AT5G28530.2 27.036 577 362 12 107 640 61 621 2.18e-55 204
Msa1342190 AT4G38170.1 29.609 358 243 5 283 634 45 399 9.09e-55 199
Msa1342190 AT5G18960.2 26.094 594 390 13 105 682 215 775 2.11e-54 203
Msa1342190 AT5G18960.1 26.094 594 390 13 105 682 215 775 2.11e-54 203
Msa1342190 AT2G32250.6 29.002 431 282 7 258 674 176 596 2.08e-53 201
Msa1342190 AT2G32250.1 29.002 431 282 7 258 674 176 596 2.08e-53 201
Msa1342190 AT2G32250.3 29.002 431 282 7 258 674 176 596 2.08e-53 201
Msa1342190 AT2G32250.2 29.002 431 282 7 258 674 176 596 2.18e-53 200
Msa1342190 AT2G32250.4 29.002 431 282 7 258 674 176 596 2.18e-53 200
Msa1342190 AT2G32250.8 29.002 431 282 7 258 674 135 555 2.70e-53 199
Msa1342190 AT2G32250.7 29.002 431 282 7 258 674 135 555 3.20e-53 199
Msa1342190 AT2G32250.5 29.002 431 282 7 258 674 176 596 3.24e-53 199
Msa1342190 AT5G28530.4 24.162 567 332 15 107 640 61 562 4.41e-36 145
Msa1342190 AT5G28530.5 23.986 567 329 15 107 640 61 558 6.05e-35 142

Find 156 sgRNAs with CRISPR-Local

Find 217 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAAGGCGATGCCTTGTATT+TGG 0.159430 tig0005289:-42556 None:intergenic
TCAATGTTGATTGTGATATT+TGG 0.171428 tig0005289:-44066 None:intergenic
AAAATTGATCCACCATTATT+TGG 0.177287 tig0005289:-44303 None:intergenic
CTCTTGCAAATCAGACTTTC+AGG 0.192125 tig0005289:-43276 None:intergenic
ATCACTTGCAACAAATTTAC+TGG 0.221550 tig0005289:-43529 None:intergenic
CCCATAGTTTCTCAATGTTT+TGG 0.242135 tig0005289:-44560 None:intergenic
TCACTCAATTTGCGGTAATT+AGG 0.258248 tig0005289:-41977 None:intergenic
CCATCAGTAATCACCGCTTT+TGG 0.302214 tig0005289:-42496 None:intergenic
AAATGATGATATAAGGGATA+TGG 0.309095 tig0005289:+41639 Msa1342190:CDS
TAACACCATACCCAACATTA+TGG 0.313783 tig0005289:-44254 None:intergenic
AGGACTTGGGTTTATCAAAA+AGG 0.326599 tig0005289:+42093 Msa1342190:CDS
CAGTGTTAGAATGTGATGAT+AGG 0.338987 tig0005289:-44350 None:intergenic
TGATAAACCCAAGTCCTTCA+TGG 0.346028 tig0005289:-42087 None:intergenic
ACCTATAGAAAGAACAAGTA+TGG 0.346662 tig0005289:+42334 Msa1342190:CDS
ATGTGACAAATGATGATATA+AGG 0.351919 tig0005289:+41632 Msa1342190:CDS
ACGACTTTGTTCGTACGATT+TGG 0.356788 tig0005289:+41888 Msa1342190:CDS
TTACCCACCTGTTGTTTGAT+AGG 0.364739 tig0005289:-42717 None:intergenic
CACTACGGGGTGCCAAATAA+TGG 0.366974 tig0005289:+44291 Msa1342190:CDS
GAGTTTACATTTACAGATGA+TGG 0.367609 tig0005289:+42229 Msa1342190:CDS
TAAGAGCGCAAGTGATTATA+AGG 0.371814 tig0005289:+43428 Msa1342190:CDS
AGGTTTGACTATGAGTGTTT+TGG 0.377109 tig0005289:+42289 Msa1342190:CDS
TGTAAGAACATGTCATATCT+TGG 0.387474 tig0005289:+42039 Msa1342190:CDS
ATCCATGTTGTCATACTTCA+TGG 0.394339 tig0005289:-43247 None:intergenic
TCCATACTTGTTCTTTCTAT+AGG 0.400377 tig0005289:-42335 None:intergenic
ATCATTCGCAACAAATTTGT+TGG 0.403036 tig0005289:-43556 None:intergenic
TAAATTTGTTGCAAGTGATA+AGG 0.405681 tig0005289:+43533 Msa1342190:CDS
TCTAACACTGCTCTGCATAC+TGG 0.407068 tig0005289:+44363 Msa1342190:CDS
ATATAATTTCACGGATCATC+AGG 0.409639 tig0005289:+42120 Msa1342190:CDS
TTTGGGCAGATTCTACTAGT+AGG 0.409763 tig0005289:+42269 Msa1342190:CDS
GATTATAAGGAGGCTCTAGA+AGG 0.413898 tig0005289:+43441 Msa1342190:CDS
GATTCATTATCAGACTCAAT+AGG 0.414121 tig0005289:-43739 None:intergenic
GCACTGGTATTACACGTAAG+AGG 0.418801 tig0005289:+43947 Msa1342190:CDS
CAAGGCATCGCCTTTGCGCC+TGG 0.420887 tig0005289:+42563 Msa1342190:CDS
AACAAATACAAGCACTAGAA+AGG 0.422563 tig0005289:+44026 Msa1342190:CDS
TGTCCAGAACTTGCTGGAAT+TGG 0.422787 tig0005289:+43681 Msa1342190:intron
TGCGGTAATTAGGCATCAAA+TGG 0.435720 tig0005289:-41967 None:intergenic
AAAGTTTAAAGATGTCAAAA+AGG 0.436388 tig0005289:+43026 Msa1342190:CDS
CGCAGAACAATTAGTTCGAA+TGG 0.445789 tig0005289:-41849 None:intergenic
TATCAACTTCACTCAATTTG+CGG 0.446828 tig0005289:-41985 None:intergenic
AAGGGTGGCCATGAAGGACT+TGG 0.449428 tig0005289:+42079 Msa1342190:CDS
GTAAGAACATGTCATATCTT+GGG 0.464989 tig0005289:+42040 Msa1342190:CDS
AACGCAAAGGAGCTAATTCA+TGG 0.469712 tig0005289:-41940 None:intergenic
AGTGTTAGAATGTGATGATA+GGG 0.470693 tig0005289:-44349 None:intergenic
TTCGAATGGTTAGCGTAGAT+CGG 0.471186 tig0005289:-41835 None:intergenic
AATAGCCGTCATGAGGGAAA+TGG 0.477370 tig0005289:+43489 Msa1342190:CDS
CAAGGGAAAGAGAACTTTGA+TGG 0.478759 tig0005289:+41592 Msa1342190:CDS
CGGACGTGTCCAGAACTTGC+TGG 0.483560 tig0005289:+43675 Msa1342190:intron
AAAGGACTTATATAATTTCA+CGG 0.493961 tig0005289:+42111 Msa1342190:CDS
CACTCTGTAGCAGTGTCAAA+TGG 0.499398 tig0005289:+43904 Msa1342190:CDS
CCAAAAGCGGTGATTACTGA+TGG 0.502215 tig0005289:+42496 Msa1342190:CDS
AATGGTGTGACCCGTGACTT+TGG 0.505092 tig0005289:+44183 Msa1342190:CDS
GACACCGATAGTGATACATA+TGG 0.508428 tig0005289:+41430 Msa1342190:CDS
GCAAGGGTTAAAATACAAGA+TGG 0.508614 tig0005289:+42142 Msa1342190:CDS
GTATCACTATATACATCAAA+AGG 0.509968 tig0005289:-41373 None:intergenic
GGTCAAAAGGGTGGCCATGA+AGG 0.510809 tig0005289:+42073 Msa1342190:CDS
TTTGAGTTACTTCCAAGGTA+AGG 0.511685 tig0005289:+42180 Msa1342190:CDS
TGTGATGATAGGGTAGTTGT+CGG 0.517812 tig0005289:-44339 None:intergenic
AGTTTGAATCTGAGTGGAAG+AGG 0.520947 tig0005289:+42677 Msa1342190:CDS
ATTTCGTCTGCAACTTGTCA+AGG 0.521232 tig0005289:-43164 None:intergenic
AAATGGACATGACAAGGATA+AGG 0.524930 tig0005289:+43506 Msa1342190:CDS
ACACCGATAGTGATACATAT+GGG 0.525577 tig0005289:+41431 Msa1342190:CDS
CAAGGGTTAAAATACAAGAT+GGG 0.527779 tig0005289:+42143 Msa1342190:CDS
AACAACGATGTTCGTACTGA+TGG 0.529175 tig0005289:+41520 Msa1342190:CDS
AAAGTCTGATTTGCAAGAGA+TGG 0.531904 tig0005289:+43280 Msa1342190:CDS
AAGTGCCCCTCGACGAAACA+TGG 0.534361 tig0005289:-43370 None:intergenic
ACAAATACAAGCACTAGAAA+GGG 0.535750 tig0005289:+44027 Msa1342190:CDS
AGCATTTCGATGCAAATGCC+AGG 0.536176 tig0005289:-42581 None:intergenic
GTAGTTGTCGGAGGGAATTG+TGG 0.539742 tig0005289:-44327 None:intergenic
TGTGACAAATGATGATATAA+GGG 0.541240 tig0005289:+41633 Msa1342190:CDS
GAGTTGTGTTTCCAAATACA+AGG 0.541485 tig0005289:+42545 Msa1342190:CDS
AAGACAGCCATTGTGCAAGT+TGG 0.545484 tig0005289:+44229 Msa1342190:CDS
AGCTAATTCATGGTTGTGAG+AGG 0.545517 tig0005289:-41930 None:intergenic
TATCAGTATCAGCCTTACCT+TGG 0.546983 tig0005289:-42192 None:intergenic
ACTTCATGGCACAAATAATG+TGG 0.547507 tig0005289:-43233 None:intergenic
CAAAAGCGGTGATTACTGAT+GGG 0.550752 tig0005289:+42497 Msa1342190:CDS
TTGACCTATCAAACAACAGG+TGG 0.553778 tig0005289:+42713 Msa1342190:CDS
GATGCAAATGCCAGGCGCAA+AGG 0.554082 tig0005289:-42573 None:intergenic
TCGTCATTTGCCTCCCAAGA+AGG 0.555407 tig0005289:+43330 Msa1342190:CDS
GTTTGAATCTGAGTGGAAGA+GGG 0.557830 tig0005289:+42678 Msa1342190:CDS
CACTGGTATTACACGTAAGA+GGG 0.559146 tig0005289:+43948 Msa1342190:CDS
GGTGTCGTGTCTGAAGATCA+AGG 0.560464 tig0005289:+43702 Msa1342190:CDS
TTCATCATTACCTTCTTGGG+AGG 0.565482 tig0005289:-43340 None:intergenic
CGAGAAGTTGAGAAAAGCAC+TGG 0.569609 tig0005289:+43931 Msa1342190:CDS
TTTATCGGTTGAAGAGAATG+TGG 0.570772 tig0005289:+42746 Msa1342190:CDS
TATTATTTGCAAAATACCAC+GGG 0.572281 tig0005289:+41698 Msa1342190:CDS
CCTTTGACATTCACCATCAG+TGG 0.574175 tig0005289:-43579 None:intergenic
GTGGAATTTAACCATGGTAA+TGG 0.576772 tig0005289:+41556 Msa1342190:CDS
GCACAAATAATGTGGGAACA+TGG 0.578248 tig0005289:-43225 None:intergenic
CACCCCATATGTATCACTAT+CGG 0.580906 tig0005289:-41434 None:intergenic
AAATGACCATGTTTCGTCGA+GGG 0.581274 tig0005289:+43364 Msa1342190:CDS
GTGTCGTGTCTGAAGATCAA+GGG 0.581492 tig0005289:+43703 Msa1342190:CDS
GCTAATTCATGGTTGTGAGA+GGG 0.581523 tig0005289:-41929 None:intergenic
GTATTATTTGCAAAATACCA+CGG 0.584890 tig0005289:+41697 Msa1342190:CDS
AATGACCATGTTTCGTCGAG+GGG 0.585541 tig0005289:+43365 Msa1342190:CDS
GCAAGTTGGAACCATAATGT+TGG 0.585606 tig0005289:+44243 Msa1342190:CDS
TAAGATAAATAGCCGTCATG+AGG 0.585792 tig0005289:+43482 Msa1342190:CDS
AGGGTGGCCATGAAGGACTT+GGG 0.586883 tig0005289:+42080 Msa1342190:CDS
GAAGCTTCAAAGATATTCAC+CGG 0.587720 tig0005289:+43000 Msa1342190:CDS
AAGATAAATAGCCGTCATGA+GGG 0.587755 tig0005289:+43483 Msa1342190:CDS
ATACTCACCGGTGTATAACT+CGG 0.588936 tig0005289:-44399 None:intergenic
ATGATAGGGTAGTTGTCGGA+GGG 0.591320 tig0005289:-44335 None:intergenic
CATGTCCATTTCCCTCATGA+CGG 0.591948 tig0005289:-43494 None:intergenic
ATTTCACGGATCATCAGGCA+AGG 0.592596 tig0005289:+42125 Msa1342190:CDS
TGGAACCATAATGTTGGGTA+TGG 0.594448 tig0005289:+44249 Msa1342190:CDS
CTTCATGGCACAAATAATGT+GGG 0.594948 tig0005289:-43232 None:intergenic
TATGAGTGCGTTGAAGAATG+TGG 0.597255 tig0005289:+44502 Msa1342190:CDS
GAACGAGATGAAGATGAGGA+TGG 0.598765 tig0005289:+43081 Msa1342190:CDS
CAAGTTGGAACCATAATGTT+GGG 0.599464 tig0005289:+44244 Msa1342190:CDS
TTATCGGTTGAAGAGAATGT+GGG 0.602000 tig0005289:+42747 Msa1342190:CDS
GTCAATGCAGTTGTCAGCAT+AGG 0.607551 tig0005289:-42964 None:intergenic
ATATAGTGATACAGATGAGG+TGG 0.607738 tig0005289:+41384 Msa1342190:CDS
CTGAAAAGTTTGAATCTGAG+TGG 0.609008 tig0005289:+42671 Msa1342190:CDS
AAGGGTTAAAATACAAGATG+GGG 0.610552 tig0005289:+42144 Msa1342190:CDS
AAACATCGCAGTGACTATTG+TGG 0.611836 tig0005289:+44536 Msa1342190:CDS
ATTATAAGGAGGCTCTAGAA+GGG 0.613050 tig0005289:+43442 Msa1342190:CDS
GCTACTTTGAGTTACTTCCA+AGG 0.617165 tig0005289:+42175 Msa1342190:CDS
GTTGATAAACAAGTTGCTAG+TGG 0.617676 tig0005289:+42001 Msa1342190:CDS
CGATAGTGATACATATGGGG+TGG 0.618374 tig0005289:+41435 Msa1342190:CDS
GATGATAGGGTAGTTGTCGG+AGG 0.619255 tig0005289:-44336 None:intergenic
AAATGGTTGTTTCTCCATGG+TGG 0.622494 tig0005289:-42387 None:intergenic
CATTGAACGAGATGAAGATG+AGG 0.623154 tig0005289:+43077 Msa1342190:CDS
TATGGTTCCAACTTGCACAA+TGG 0.627946 tig0005289:-44236 None:intergenic
TTTCACGGATCATCAGGCAA+GGG 0.637022 tig0005289:+42126 Msa1342190:CDS
TACGGGGTGCCAAATAATGG+TGG 0.637391 tig0005289:+44294 Msa1342190:CDS
AAAAGCGGTGATTACTGATG+GGG 0.637407 tig0005289:+42498 Msa1342190:CDS
TTTAGTGGATATAACCACCA+TGG 0.638528 tig0005289:+42373 Msa1342190:CDS
AGAACGACATCAATCTGTGA+AGG 0.639278 tig0005289:+42808 Msa1342190:CDS
CCTTTCTTACTTCAAACCCG+TGG 0.639832 tig0005289:-41714 None:intergenic
CATTGCAAACACCATTACCA+TGG 0.642035 tig0005289:-41567 None:intergenic
AATGGTGTTTGCAATGAGCA+AGG 0.648235 tig0005289:+41574 Msa1342190:CDS
GCTAGTGGTCTACATTCGCA+AGG 0.649023 tig0005289:+42016 Msa1342190:CDS
AACAATAGAGACATACAAGT+GGG 0.649289 tig0005289:+42435 Msa1342190:CDS
ATCAAATGGACAAAACGCAA+AGG 0.651947 tig0005289:-41953 None:intergenic
AAAATGACCATGTTTCGTCG+AGG 0.652304 tig0005289:+43363 Msa1342190:CDS
TGACCTATCAAACAACAGGT+GGG 0.653955 tig0005289:+42714 Msa1342190:CDS
TGAGGGAAATGGACATGACA+AGG 0.654599 tig0005289:+43500 Msa1342190:CDS
TGTCGTGTCTGAAGATCAAG+GGG 0.656613 tig0005289:+43704 Msa1342190:CDS
ATGGTGTTTGCAATGAGCAA+GGG 0.657603 tig0005289:+41575 Msa1342190:CDS
TCTGTAGCAGTGTCAAATGG+TGG 0.657609 tig0005289:+43907 Msa1342190:CDS
TGATGGAGATGCAGACGGTG+TGG 0.660310 tig0005289:+41537 Msa1342190:CDS
AAACAATAGAGACATACAAG+TGG 0.671084 tig0005289:+42434 Msa1342190:CDS
TGCCATGAAGTATGACAACA+TGG 0.671427 tig0005289:+43245 Msa1342190:CDS
GTATGACAAACATCCAAAAG+CGG 0.671446 tig0005289:+42483 Msa1342190:CDS
CACCGATAGTGATACATATG+GGG 0.671448 tig0005289:+41432 Msa1342190:CDS
CAATGTTCCGAGTTATACAC+CGG 0.682160 tig0005289:+44392 Msa1342190:CDS
CATTTGACACTGCTACAGAG+TGG 0.682675 tig0005289:-43903 None:intergenic
GAGCGCAAGTGATTATAAGG+AGG 0.683366 tig0005289:+43431 Msa1342190:CDS
TGTTGCGAATGATCCACTGA+TGG 0.687875 tig0005289:+43566 Msa1342190:CDS
GACGGTGTGGAATTTAACCA+TGG 0.688761 tig0005289:+41550 Msa1342190:CDS
TGTATATAGTGATACAGATG+AGG 0.703043 tig0005289:+41381 Msa1342190:CDS
TGTAGACGCTTTGAACGCAG+AGG 0.705116 tig0005289:+43198 Msa1342190:CDS
CGTACTGATGGAGATGCAGA+CGG 0.711480 tig0005289:+41532 Msa1342190:CDS
ACATAGACTATTGAACGCAG+CGG 0.723695 tig0005289:-43394 None:intergenic
AATTATGCAAGAAATCCACA+AGG 0.743577 tig0005289:-42873 None:intergenic
GGATATGGAATTCAACACAG+AGG 0.763384 tig0005289:+41654 Msa1342190:CDS
GTCGTGTCTGAAGATCAAGG+GGG 0.856783 tig0005289:+43705 Msa1342190:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGAAATTGTATATGATATTT+TGG + tig0005289:43832-43851 Msa1342190:intron 15.0%
!!! AATTATTTTAATATGCACTA+CGG + tig0005289:44276-44295 Msa1342190:CDS 15.0%
!!! TCATAAACTGTTTTAAATAT+AGG - tig0005289:44487-44506 None:intergenic 15.0%
!! AAAGGACTTATATAATTTCA+CGG + tig0005289:42111-42130 Msa1342190:CDS 20.0%
!! AAAGTTTAAAGATGTCAAAA+AGG + tig0005289:43026-43045 Msa1342190:CDS 20.0%
!!! ATTTTCAAGGTTAATGTATT+TGG + tig0005289:43114-43133 Msa1342190:CDS 20.0%
!!! TTGTTTTAATTGTTGTAGAA+TGG + tig0005289:44165-44184 Msa1342190:intron 20.0%
!!! ATTATTTTAATATGCACTAC+GGG + tig0005289:44277-44296 Msa1342190:CDS 20.0%
! GTATCACTATATACATCAAA+AGG - tig0005289:41376-41395 None:intergenic 25.0%
! ATGTGACAAATGATGATATA+AGG + tig0005289:41632-41651 Msa1342190:CDS 25.0%
! TGTGACAAATGATGATATAA+GGG + tig0005289:41633-41652 Msa1342190:CDS 25.0%
! AAATGATGATATAAGGGATA+TGG + tig0005289:41639-41658 Msa1342190:CDS 25.0%
! GTATTATTTGCAAAATACCA+CGG + tig0005289:41697-41716 Msa1342190:CDS 25.0%
! TATTATTTGCAAAATACCAC+GGG + tig0005289:41698-41717 Msa1342190:CDS 25.0%
! GATCGAAAAAATAAGAAGAA+TGG + tig0005289:41809-41828 Msa1342190:CDS 25.0%
! ATATCCACTAAAAATGACAA+GGG - tig0005289:42365-42384 None:intergenic 25.0%
! TATATCCACTAAAAATGACA+AGG - tig0005289:42366-42385 None:intergenic 25.0%
! AATTAAAGCACAAGCAAAAA+TGG - tig0005289:42407-42426 None:intergenic 25.0%
!!! GGTTCTAAATTTGTTTTCAA+AGG + tig0005289:42456-42475 Msa1342190:CDS 25.0%
!! GACATCTTTAAACTTTTTAC+CGG - tig0005289:43022-43041 None:intergenic 25.0%
!! CAAAAAAGATGTAGCTTTTT+CGG + tig0005289:43137-43156 Msa1342190:CDS 25.0%
!! TTTTTCATCATTACCTTCTT+GGG - tig0005289:43346-43365 None:intergenic 25.0%
!!! TTTTTTCATCATTACCTTCT+TGG - tig0005289:43347-43366 None:intergenic 25.0%
!!! TAAATTTGTTGCAAGTGATA+AGG + tig0005289:43533-43552 Msa1342190:CDS 25.0%
!! TCAATGTTGATTGTGATATT+TGG - tig0005289:44069-44088 None:intergenic 25.0%
! CAGCAAATATACTATAACAA+AGG - tig0005289:44102-44121 None:intergenic 25.0%
!!! TTATTTTAATATGCACTACG+GGG + tig0005289:44278-44297 Msa1342190:CDS 25.0%
! AAAATTGATCCACCATTATT+TGG - tig0005289:44306-44325 None:intergenic 25.0%
! TAAACAATCAAAATACTCAC+CGG - tig0005289:44414-44433 None:intergenic 25.0%
TGTATATAGTGATACAGATG+AGG + tig0005289:41381-41400 Msa1342190:CDS 30.0%
TCAATTAGTATGCAATAAGG+AGG + tig0005289:41778-41797 Msa1342190:intron 30.0%
CAATTAGTATGCAATAAGGA+GGG + tig0005289:41779-41798 Msa1342190:intron 30.0%
TATCAACTTCACTCAATTTG+CGG - tig0005289:41988-42007 None:intergenic 30.0%
TGTAAGAACATGTCATATCT+TGG + tig0005289:42039-42058 Msa1342190:CDS 30.0%
GTAAGAACATGTCATATCTT+GGG + tig0005289:42040-42059 Msa1342190:CDS 30.0%
!!! TCATATCTTGGGTTTTTTGA+TGG + tig0005289:42051-42070 Msa1342190:CDS 30.0%
!!! CATATCTTGGGTTTTTTGAT+GGG + tig0005289:42052-42071 Msa1342190:CDS 30.0%
ATATAATTTCACGGATCATC+AGG + tig0005289:42120-42139 Msa1342190:CDS 30.0%
CAAGGGTTAAAATACAAGAT+GGG + tig0005289:42143-42162 Msa1342190:CDS 30.0%
AAGGGTTAAAATACAAGATG+GGG + tig0005289:42144-42163 Msa1342190:CDS 30.0%
GAGTTTACATTTACAGATGA+TGG + tig0005289:42229-42248 Msa1342190:CDS 30.0%
!!! ACGCCTAGAAAACATTTTTT+GGG + tig0005289:42252-42271 Msa1342190:CDS 30.0%
ACCTATAGAAAGAACAAGTA+TGG + tig0005289:42334-42353 Msa1342190:CDS 30.0%
TCCATACTTGTTCTTTCTAT+AGG - tig0005289:42338-42357 None:intergenic 30.0%
TATCCACTAAAAATGACAAG+GGG - tig0005289:42364-42383 None:intergenic 30.0%
AAACAATAGAGACATACAAG+TGG + tig0005289:42434-42453 Msa1342190:CDS 30.0%
AACAATAGAGACATACAAGT+GGG + tig0005289:42435-42454 Msa1342190:CDS 30.0%
! TTTTGGATGTTTGTCATACA+TGG - tig0005289:42482-42501 None:intergenic 30.0%
!! ATTTTGACCTATCAAACAAC+AGG + tig0005289:42710-42729 Msa1342190:CDS 30.0%
GGTGGGTAAAAAGAATTTAT+CGG + tig0005289:42731-42750 Msa1342190:CDS 30.0%
TTCTAACACCACACAAAAAA+TGG - tig0005289:42792-42811 None:intergenic 30.0%
AATTATGCAAGAAATCCACA+AGG - tig0005289:42876-42895 None:intergenic 30.0%
!!! TGGAAACATTGTCATTTTCA+AGG + tig0005289:43101-43120 Msa1342190:CDS 30.0%
ATCACTTGCAACAAATTTAC+TGG - tig0005289:43532-43551 None:intergenic 30.0%
ATCATTCGCAACAAATTTGT+TGG - tig0005289:43559-43578 None:intergenic 30.0%
TGTTCTAATTGTAGAAATCC+AGG + tig0005289:43642-43661 Msa1342190:intron 30.0%
GTTCTAATTGTAGAAATCCA+GGG + tig0005289:43643-43662 Msa1342190:intron 30.0%
GATTCATTATCAGACTCAAT+AGG - tig0005289:43742-43761 None:intergenic 30.0%
AACAAATACAAGCACTAGAA+AGG + tig0005289:44026-44045 Msa1342190:CDS 30.0%
ACAAATACAAGCACTAGAAA+GGG + tig0005289:44027-44046 Msa1342190:CDS 30.0%
! ATTTTTCATGTCCAAAGTCA+CGG - tig0005289:44197-44216 None:intergenic 30.0%
AGTGTTAGAATGTGATGATA+GGG - tig0005289:44352-44371 None:intergenic 30.0%
ATATAGTGATACAGATGAGG+TGG + tig0005289:41384-41403 Msa1342190:CDS 35.0%
ACACCGATAGTGATACATAT+GGG + tig0005289:41431-41450 Msa1342190:CDS 35.0%
GTGGAATTTAACCATGGTAA+TGG + tig0005289:41556-41575 Msa1342190:CDS 35.0%
ATGTGATCACGTGATTCTAA+TGG + tig0005289:41740-41759 Msa1342190:intron 35.0%
TGTGATCACGTGATTCTAAT+GGG + tig0005289:41741-41760 Msa1342190:intron 35.0%
GCGTCAATTAGTATGCAATA+AGG + tig0005289:41775-41794 Msa1342190:intron 35.0%
ATCAAATGGACAAAACGCAA+AGG - tig0005289:41956-41975 None:intergenic 35.0%
TCACTCAATTTGCGGTAATT+AGG - tig0005289:41980-41999 None:intergenic 35.0%
! GTTGATAAACAAGTTGCTAG+TGG + tig0005289:42001-42020 Msa1342190:CDS 35.0%
!!! GGTTTTTTGATGGGTCAAAA+GGG + tig0005289:42061-42080 Msa1342190:CDS 35.0%
AGGACTTGGGTTTATCAAAA+AGG + tig0005289:42093-42112 Msa1342190:CDS 35.0%
GCAAGGGTTAAAATACAAGA+TGG + tig0005289:42142-42161 Msa1342190:CDS 35.0%
! TTTGAGTTACTTCCAAGGTA+AGG + tig0005289:42180-42199 Msa1342190:CDS 35.0%
!!! GACGCCTAGAAAACATTTTT+TGG + tig0005289:42251-42270 Msa1342190:CDS 35.0%
! CTGCCCAAAAAATGTTTTCT+AGG - tig0005289:42258-42277 None:intergenic 35.0%
! AGGTTTGACTATGAGTGTTT+TGG + tig0005289:42289-42308 Msa1342190:CDS 35.0%
!!! AAACCCCTTGTCATTTTTAG+TGG + tig0005289:42358-42377 Msa1342190:CDS 35.0%
! TTTAGTGGATATAACCACCA+TGG + tig0005289:42373-42392 Msa1342190:CDS 35.0%
!! CAAAAATGGTTGTTTCTCCA+TGG - tig0005289:42393-42412 None:intergenic 35.0%
GTATGACAAACATCCAAAAG+CGG + tig0005289:42483-42502 Msa1342190:CDS 35.0%
GAGTTGTGTTTCCAAATACA+AGG + tig0005289:42545-42564 Msa1342190:CDS 35.0%
!!! TCAAACTTTTCAGGTGTACA+TGG - tig0005289:42664-42683 None:intergenic 35.0%
! CACTCAGATTCAAACTTTTC+AGG - tig0005289:42673-42692 None:intergenic 35.0%
CTGAAAAGTTTGAATCTGAG+TGG + tig0005289:42671-42690 Msa1342190:CDS 35.0%
! TTTATCGGTTGAAGAGAATG+TGG + tig0005289:42746-42765 Msa1342190:CDS 35.0%
! TTATCGGTTGAAGAGAATGT+GGG + tig0005289:42747-42766 Msa1342190:CDS 35.0%
GAAGCTTCAAAGATATTCAC+CGG + tig0005289:43000-43019 Msa1342190:CDS 35.0%
CTTCATGGCACAAATAATGT+GGG - tig0005289:43235-43254 None:intergenic 35.0%
ACTTCATGGCACAAATAATG+TGG - tig0005289:43236-43255 None:intergenic 35.0%
ATCCATGTTGTCATACTTCA+TGG - tig0005289:43250-43269 None:intergenic 35.0%
! AAAGTCTGATTTGCAAGAGA+TGG + tig0005289:43280-43299 Msa1342190:CDS 35.0%
! TAAGAGCGCAAGTGATTATA+AGG + tig0005289:43428-43447 Msa1342190:CDS 35.0%
!! ATTATAAGGAGGCTCTAGAA+GGG + tig0005289:43442-43461 Msa1342190:CDS 35.0%
TAAGATAAATAGCCGTCATG+AGG + tig0005289:43482-43501 Msa1342190:CDS 35.0%
AAGATAAATAGCCGTCATGA+GGG + tig0005289:43483-43502 Msa1342190:CDS 35.0%
AAATGGACATGACAAGGATA+AGG + tig0005289:43506-43525 Msa1342190:CDS 35.0%
!!! TGTTGACTTTTTACTCCTAC+GGG - tig0005289:43607-43626 None:intergenic 35.0%
!!! GTGTTGACTTTTTACTCCTA+CGG - tig0005289:43608-43627 None:intergenic 35.0%
TTAGAACAACATCTTGTCCT+CGG - tig0005289:43630-43649 None:intergenic 35.0%
TATCATTACTCATAGACAGC+TGG - tig0005289:43870-43889 None:intergenic 35.0%
!! TGCTGAAAATTGTGTTGCTT+TGG + tig0005289:44117-44136 Msa1342190:intron 35.0%
! TTTTTCATGTCCAAAGTCAC+GGG - tig0005289:44196-44215 None:intergenic 35.0%
! CAAGTTGGAACCATAATGTT+GGG + tig0005289:44244-44263 Msa1342190:CDS 35.0%
TAACACCATACCCAACATTA+TGG - tig0005289:44257-44276 None:intergenic 35.0%
CAGTGTTAGAATGTGATGAT+AGG - tig0005289:44353-44372 None:intergenic 35.0%
GACACCGATAGTGATACATA+TGG + tig0005289:41430-41449 Msa1342190:CDS 40.0%
CACCGATAGTGATACATATG+GGG + tig0005289:41432-41451 Msa1342190:CDS 40.0%
CACCCCATATGTATCACTAT+CGG - tig0005289:41437-41456 None:intergenic 40.0%
AACAACGATGTTCGTACTGA+TGG + tig0005289:41520-41539 Msa1342190:CDS 40.0%
CATTGCAAACACCATTACCA+TGG - tig0005289:41570-41589 None:intergenic 40.0%
AATGGTGTTTGCAATGAGCA+AGG + tig0005289:41574-41593 Msa1342190:CDS 40.0%
ATGGTGTTTGCAATGAGCAA+GGG + tig0005289:41575-41594 Msa1342190:CDS 40.0%
CAAGGGAAAGAGAACTTTGA+TGG + tig0005289:41592-41611 Msa1342190:CDS 40.0%
GGATATGGAATTCAACACAG+AGG + tig0005289:41654-41673 Msa1342190:CDS 40.0%
TTCGAATGGTTAGCGTAGAT+CGG - tig0005289:41838-41857 None:intergenic 40.0%
CGCAGAACAATTAGTTCGAA+TGG - tig0005289:41852-41871 None:intergenic 40.0%
ACGACTTTGTTCGTACGATT+TGG + tig0005289:41888-41907 Msa1342190:CDS 40.0%
GCTAATTCATGGTTGTGAGA+GGG - tig0005289:41932-41951 None:intergenic 40.0%
AGCTAATTCATGGTTGTGAG+AGG - tig0005289:41933-41952 None:intergenic 40.0%
AACGCAAAGGAGCTAATTCA+TGG - tig0005289:41943-41962 None:intergenic 40.0%
TGCGGTAATTAGGCATCAAA+TGG - tig0005289:41970-41989 None:intergenic 40.0%
!!! GGGTTTTTTGATGGGTCAAA+AGG + tig0005289:42060-42079 Msa1342190:CDS 40.0%
!! TTTTTGATGGGTCAAAAGGG+TGG + tig0005289:42064-42083 Msa1342190:CDS 40.0%
TGATAAACCCAAGTCCTTCA+TGG - tig0005289:42090-42109 None:intergenic 40.0%
! GCTACTTTGAGTTACTTCCA+AGG + tig0005289:42175-42194 Msa1342190:CDS 40.0%
TATCAGTATCAGCCTTACCT+TGG - tig0005289:42195-42214 None:intergenic 40.0%
TTTGGGCAGATTCTACTAGT+AGG + tig0005289:42269-42288 Msa1342190:CDS 40.0%
!! AAATGGTTGTTTCTCCATGG+TGG - tig0005289:42390-42409 None:intergenic 40.0%
CAAAAGCGGTGATTACTGAT+GGG + tig0005289:42497-42516 Msa1342190:CDS 40.0%
AAAAGCGGTGATTACTGATG+GGG + tig0005289:42498-42517 Msa1342190:CDS 40.0%
AGTTTGAATCTGAGTGGAAG+AGG + tig0005289:42677-42696 Msa1342190:CDS 40.0%
GTTTGAATCTGAGTGGAAGA+GGG + tig0005289:42678-42697 Msa1342190:CDS 40.0%
TTGACCTATCAAACAACAGG+TGG + tig0005289:42713-42732 Msa1342190:CDS 40.0%
TGACCTATCAAACAACAGGT+GGG + tig0005289:42714-42733 Msa1342190:CDS 40.0%
! TTACCCACCTGTTGTTTGAT+AGG - tig0005289:42720-42739 None:intergenic 40.0%
!!! ATGCGAGACCATTTTTTGTG+TGG + tig0005289:42781-42800 Msa1342190:CDS 40.0%
AGAACGACATCAATCTGTGA+AGG + tig0005289:42808-42827 Msa1342190:CDS 40.0%
!!! CCACAAGGCTATTTTTGTGT+CGG - tig0005289:42861-42880 None:intergenic 40.0%
AGATGTCAAAAAGGCGATAG+AGG + tig0005289:43035-43054 Msa1342190:CDS 40.0%
CATTGAACGAGATGAAGATG+AGG + tig0005289:43077-43096 Msa1342190:CDS 40.0%
ATTTCGTCTGCAACTTGTCA+AGG - tig0005289:43167-43186 None:intergenic 40.0%
GCACAAATAATGTGGGAACA+TGG - tig0005289:43228-43247 None:intergenic 40.0%
TGCCATGAAGTATGACAACA+TGG + tig0005289:43245-43264 Msa1342190:CDS 40.0%
CTCTTGCAAATCAGACTTTC+AGG - tig0005289:43279-43298 None:intergenic 40.0%
TTCATCATTACCTTCTTGGG+AGG - tig0005289:43343-43362 None:intergenic 40.0%
AAAATGACCATGTTTCGTCG+AGG + tig0005289:43363-43382 Msa1342190:CDS 40.0%
AAATGACCATGTTTCGTCGA+GGG + tig0005289:43364-43383 Msa1342190:CDS 40.0%
ACATAGACTATTGAACGCAG+CGG - tig0005289:43397-43416 None:intergenic 40.0%
!! GATTATAAGGAGGCTCTAGA+AGG + tig0005289:43441-43460 Msa1342190:CDS 40.0%
CACTGGTATTACACGTAAGA+GGG + tig0005289:43948-43967 Msa1342190:CDS 40.0%
TATGGTTCCAACTTGCACAA+TGG - tig0005289:44239-44258 None:intergenic 40.0%
! GCAAGTTGGAACCATAATGT+TGG + tig0005289:44243-44262 Msa1342190:CDS 40.0%
TGGAACCATAATGTTGGGTA+TGG + tig0005289:44249-44268 Msa1342190:CDS 40.0%
TGTGATGATAGGGTAGTTGT+CGG - tig0005289:44342-44361 None:intergenic 40.0%
CAATGTTCCGAGTTATACAC+CGG + tig0005289:44392-44411 Msa1342190:CDS 40.0%
ATACTCACCGGTGTATAACT+CGG - tig0005289:44402-44421 None:intergenic 40.0%
TATGAGTGCGTTGAAGAATG+TGG + tig0005289:44502-44521 Msa1342190:CDS 40.0%
AAACATCGCAGTGACTATTG+TGG + tig0005289:44536-44555 Msa1342190:CDS 40.0%
CGATAGTGATACATATGGGG+TGG + tig0005289:41435-41454 Msa1342190:CDS 45.0%
GACGGTGTGGAATTTAACCA+TGG + tig0005289:41550-41569 Msa1342190:CDS 45.0%
CCTTTCTTACTTCAAACCCG+TGG - tig0005289:41717-41736 None:intergenic 45.0%
! CCACGGGTTTGAAGTAAGAA+AGG + tig0005289:41714-41733 Msa1342190:intron 45.0%
ATTTCACGGATCATCAGGCA+AGG + tig0005289:42125-42144 Msa1342190:CDS 45.0%
TTTCACGGATCATCAGGCAA+GGG + tig0005289:42126-42145 Msa1342190:CDS 45.0%
! CCATCAGTAATCACCGCTTT+TGG - tig0005289:42499-42518 None:intergenic 45.0%
CCAAAAGCGGTGATTACTGA+TGG + tig0005289:42496-42515 Msa1342190:CDS 45.0%
CAAAGGCGATGCCTTGTATT+TGG - tig0005289:42559-42578 None:intergenic 45.0%
AGCATTTCGATGCAAATGCC+AGG - tig0005289:42584-42603 None:intergenic 45.0%
! CCGACACAAAAATAGCCTTG+TGG + tig0005289:42858-42877 Msa1342190:CDS 45.0%
GTCAATGCAGTTGTCAGCAT+AGG - tig0005289:42967-42986 None:intergenic 45.0%
GAACGAGATGAAGATGAGGA+TGG + tig0005289:43081-43100 Msa1342190:CDS 45.0%
AATGACCATGTTTCGTCGAG+GGG + tig0005289:43365-43384 Msa1342190:CDS 45.0%
GAGCGCAAGTGATTATAAGG+AGG + tig0005289:43431-43450 Msa1342190:CDS 45.0%
AATAGCCGTCATGAGGGAAA+TGG + tig0005289:43489-43508 Msa1342190:CDS 45.0%
CATGTCCATTTCCCTCATGA+CGG - tig0005289:43497-43516 None:intergenic 45.0%
TGAGGGAAATGGACATGACA+AGG + tig0005289:43500-43519 Msa1342190:CDS 45.0%
TGTTGCGAATGATCCACTGA+TGG + tig0005289:43566-43585 Msa1342190:CDS 45.0%
CCTTTGACATTCACCATCAG+TGG - tig0005289:43582-43601 None:intergenic 45.0%
! CCACTGATGGTGAATGTCAA+AGG + tig0005289:43579-43598 Msa1342190:intron 45.0%
GGAGTAAAAAGTCAACACCG+AGG + tig0005289:43610-43629 Msa1342190:intron 45.0%
!! TGTCCAGAACTTGCTGGAAT+TGG + tig0005289:43681-43700 Msa1342190:intron 45.0%
ACACCAATTCCAGCAAGTTC+TGG - tig0005289:43687-43706 None:intergenic 45.0%
GTGTCGTGTCTGAAGATCAA+GGG + tig0005289:43703-43722 Msa1342190:CDS 45.0%
TGTCGTGTCTGAAGATCAAG+GGG + tig0005289:43704-43723 Msa1342190:CDS 45.0%
CATTTGACACTGCTACAGAG+TGG - tig0005289:43906-43925 None:intergenic 45.0%
CACTCTGTAGCAGTGTCAAA+TGG + tig0005289:43904-43923 Msa1342190:CDS 45.0%
TCTGTAGCAGTGTCAAATGG+TGG + tig0005289:43907-43926 Msa1342190:CDS 45.0%
! CGAGAAGTTGAGAAAAGCAC+TGG + tig0005289:43931-43950 Msa1342190:CDS 45.0%
! GCACTGGTATTACACGTAAG+AGG + tig0005289:43947-43966 Msa1342190:CDS 45.0%
AAGACAGCCATTGTGCAAGT+TGG + tig0005289:44229-44248 Msa1342190:CDS 45.0%
ATGATAGGGTAGTTGTCGGA+GGG - tig0005289:44338-44357 None:intergenic 45.0%
TCTAACACTGCTCTGCATAC+TGG + tig0005289:44363-44382 Msa1342190:CDS 45.0%
! CGTACTGATGGAGATGCAGA+CGG + tig0005289:41532-41551 Msa1342190:CDS 50.0%
GCTAGTGGTCTACATTCGCA+AGG + tig0005289:42016-42035 Msa1342190:CDS 50.0%
! TGTAGACGCTTTGAACGCAG+AGG + tig0005289:43198-43217 Msa1342190:CDS 50.0%
TCGTCATTTGCCTCCCAAGA+AGG + tig0005289:43330-43349 Msa1342190:CDS 50.0%
!! TGAATGTCAAAGGTGCCCGT+AGG + tig0005289:43589-43608 Msa1342190:intron 50.0%
GAAATCCAGGGCACACGATA+CGG + tig0005289:43655-43674 Msa1342190:intron 50.0%
! GGTGTCGTGTCTGAAGATCA+AGG + tig0005289:43702-43721 Msa1342190:CDS 50.0%
GTCGTGTCTGAAGATCAAGG+GGG + tig0005289:43705-43724 Msa1342190:CDS 50.0%
TCTGAAGATCAAGGGGGAGA+AGG + tig0005289:43711-43730 Msa1342190:CDS 50.0%
AATGGTGTGACCCGTGACTT+TGG + tig0005289:44183-44202 Msa1342190:CDS 50.0%
! CACTACGGGGTGCCAAATAA+TGG + tig0005289:44291-44310 Msa1342190:CDS 50.0%
! TACGGGGTGCCAAATAATGG+TGG + tig0005289:44294-44313 Msa1342190:CDS 50.0%
GTAGTTGTCGGAGGGAATTG+TGG - tig0005289:44330-44349 None:intergenic 50.0%
GATGATAGGGTAGTTGTCGG+AGG - tig0005289:44339-44358 None:intergenic 50.0%
TGATGGAGATGCAGACGGTG+TGG + tig0005289:41537-41556 Msa1342190:CDS 55.0%
GGTCAAAAGGGTGGCCATGA+AGG + tig0005289:42073-42092 Msa1342190:CDS 55.0%
AAGGGTGGCCATGAAGGACT+TGG + tig0005289:42079-42098 Msa1342190:CDS 55.0%
AGGGTGGCCATGAAGGACTT+GGG + tig0005289:42080-42099 Msa1342190:CDS 55.0%
GATGCAAATGCCAGGCGCAA+AGG - tig0005289:42576-42595 None:intergenic 55.0%
AAGTGCCCCTCGACGAAACA+TGG - tig0005289:43373-43392 None:intergenic 55.0%
CGGACGTGTCCAGAACTTGC+TGG + tig0005289:43675-43694 Msa1342190:intron 60.0%
!! CAAGGCATCGCCTTTGCGCC+TGG + tig0005289:42563-42582 Msa1342190:CDS 65.0%
CACGTCCGTATCGTGTGCCC+TGG - tig0005289:43663-43682 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0005289 gene 41346 44571 41346 ID=Msa1342190;Name=Msa1342190
tig0005289 mRNA 41346 44571 41346 ID=Msa1342190-mRNA-1;Parent=Msa1342190;Name=Msa1342190-mRNA-1;_AED=0.28;_eAED=0.30;_QI=0|0|0|0.33|1|1|6|0|927
tig0005289 exon 41346 41726 41346 ID=Msa1342190-mRNA-1:exon:3487;Parent=Msa1342190-mRNA-1
tig0005289 exon 41797 43587 41797 ID=Msa1342190-mRNA-1:exon:3488;Parent=Msa1342190-mRNA-1
tig0005289 exon 43688 43774 43688 ID=Msa1342190-mRNA-1:exon:3489;Parent=Msa1342190-mRNA-1
tig0005289 exon 43871 44092 43871 ID=Msa1342190-mRNA-1:exon:3490;Parent=Msa1342190-mRNA-1
tig0005289 exon 44183 44413 44183 ID=Msa1342190-mRNA-1:exon:3491;Parent=Msa1342190-mRNA-1
tig0005289 exon 44500 44571 44500 ID=Msa1342190-mRNA-1:exon:3492;Parent=Msa1342190-mRNA-1
tig0005289 CDS 41346 41726 41346 ID=Msa1342190-mRNA-1:cds;Parent=Msa1342190-mRNA-1
tig0005289 CDS 41797 43587 41797 ID=Msa1342190-mRNA-1:cds;Parent=Msa1342190-mRNA-1
tig0005289 CDS 43688 43774 43688 ID=Msa1342190-mRNA-1:cds;Parent=Msa1342190-mRNA-1
tig0005289 CDS 43871 44092 43871 ID=Msa1342190-mRNA-1:cds;Parent=Msa1342190-mRNA-1
tig0005289 CDS 44183 44413 44183 ID=Msa1342190-mRNA-1:cds;Parent=Msa1342190-mRNA-1
tig0005289 CDS 44500 44571 44500 ID=Msa1342190-mRNA-1:cds;Parent=Msa1342190-mRNA-1
Gene Sequence

>Msa1342190

ATGTCTACATATAGTGAAGCAACATTGCCTTTTGATGTATATAGTGATACAGATGAGGTGGAATTTAATAGTGTTAATGATATTGACACCGATAGTGATACATATGGGGTGGAATTTAACAGTGTTAATGATGTTGACACTGATAGTGATACTGAAGATATAAAAGTTAATAGCAACAACGATGTTCGTACTGATGGAGATGCAGACGGTGTGGAATTTAACCATGGTAATGGTGTTTGCAATGAGCAAGGGAAAGAGAACTTTGATGGCTACAAATGCATCAGTGATGTGACAAATGATGATATAAGGGATATGGAATTCAACACAGAGGATGAAGCTATAAAGTTTTATGTATTATTTGCAAAATACCACGGGTTTGAAGAGGGTGTTAATGATCGAAAAAATAAGAAGAATGGCAGCCGATCTACGCTAACCATTCGAACTAATTGTTCTGCGAAACTTCGAGTAGTCTACGACTTTGTTCGTACGATTTGGAGAGTTTCTGTTTTCAAACCCTCTCACAACCATGAATTAGCTCCTTTGCGTTTTGTCCATTTGATGCCTAATTACCGCAAATTGAGTGAAGTTGATAAACAAGTTGCTAGTGGTCTACATTCGCAAGGTGTAAGAACATGTCATATCTTGGGTTTTTTGATGGGTCAAAAGGGTGGCCATGAAGGACTTGGGTTTATCAAAAAGGACTTATATAATTTCACGGATCATCAGGCAAGGGTTAAAATACAAGATGGGGATACTTTTGCTACTTTGAGTTACTTCCAAGGTAAGGCTGATACTGATACATCATTCTTTTCAGAGTTTACATTTACAGATGATGGACGCCTAGAAAACATTTTTTGGGCAGATTCTACTAGTAGGTTTGACTATGAGTGTTTTGGCGATGTTGTTGCATTTGACACTACCTATAGAAAGAACAAGTATGGAAAACCCCTTGTCATTTTTAGTGGATATAACCACCATGGAGAAACAACCATTTTTGCTTGTGCTTTAATTTGTGATGAAACAATAGAGACATACAAGTGGGTTCTAAATTTGTTTTCAAAGGCCATGTATGACAAACATCCAAAAGCGGTGATTACTGATGGGGATAAATCAATGAGAAAAGCTATCAGAGTTGTGTTTCCAAATACAAGGCATCGCCTTTGCGCCTGGCATTTGCATCGAAATGCTGTTCAACATGTGAAGAATTCAAAATTTTTAGAAGAGTTCAAGTCACTGATGTATTCTCCATGTACACCTGAAAAGTTTGAATCTGAGTGGAAGAGGGTTGTTGAAAATTTTGACCTATCAAACAACAGGTGGGTAAAAAGAATTTATCGGTTGAAGAGAATGTGGGCAAGTGCATACATGCGAGACCATTTTTTGTGTGGTGTTAGAACGACATCAATCTGTGAAGGAGTGAATTCATTTATCAAGAAGTATGTCCGACACAAAAATAGCCTTGTGGATTTCTTGCATAATTTTGAAAGAGCTCTCAAAGAATACAGACATAATGAATTATTTTCTGATTTCAAGTCGTTCTATTATCATCCTATGCTGACAACTGCATTGACTACTTTTGAGTCTGAAGCTTCAAAGATATTCACCGGTAAAAAGTTTAAAGATGTCAAAAAGGCGATAGAGGATGTTGTTGCATTATCAGTCATTGAACGAGATGAAGATGAGGATGGAAACATTGTCATTTTCAAGGTTAATGTATTTGGCAAAAAAGATGTAGCTTTTTCGGTATACCTTGACAAGTTGCAGACGAAATTTTTATGTGATTGTAGACGCTTTGAACGCAGAGGACTGCCATGTTCCCACATTATTTGTGCCATGAAGTATGACAACATGGATGTGTTTCCTGAAAGTCTGATTTGCAAGAGATGGACAAAGACTGCAAAGAGTGATCACATCTCGTCATTTGCCTCCCAAGAAGGTAATGATGAAAAAATGACCATGTTTCGTCGAGGGGCACTTGCCGCTGCGTTCAATAGTCTATGTAATGTTTCGTGTAAGAGCGCAAGTGATTATAAGGAGGCTCTAGAAGGGATTTATAGTGTGTGTAATAAGATAAATAGCCGTCATGAGGGAAATGGACATGACAAGGATAAGGCCAGTAAATTTGTTGCAAGTGATAAGGCCAACAAATTTGTTGCGAATGATCCACTGATGAACTTGCTGGAATTGGTGTCGTGTCTGAAGATCAAGGGGGAGAAGGCTTCACCTATTGAGTCTGATAATGAATCAAAAAGTTTAAGTCTGTCTATGAGTAATGATATGAATGATGACATCCACTCTGTAGCAGTGTCAAATGGTGGACGAGAAGTTGAGAAAAGCACTGGTATTACACGTAAGAGGGAATGTGACAATGTTGCATTTTCAACACAAGACTCTGTCAACAAAAGAAAAACAAAAACAAATACAAGCACTAGAAAGGGTGATGCTTGTGTGACTCCAAATATCACAATCAACATTGATAATAATGGTGTGACCCGTGACTTTGGACATGAAAAATCTACTCTCAAACAAGACAGCCATTGTGCAAGTTGGAACCATAATGTTGGGTATGGTGTTAATTATTTTAATATGCACTACGGGGTGCCAAATAATGGTGGATCAATTTTTCCACAATTCCCTCCGACAACTACCCTATCATCACATTCTAACACTGCTCTGCATACTGGAACACACAATGTTCCGAGTTATACACCGTTTATGAGTGCGTTGAAGAATGTGGAGCTGTTAGCAAAACATCGCAGTGACTATTGTGGACCAAAACATTGA
Protein sequence

>Msa1342190

MSTYSEATLPFDVYSDTDEVEFNSVNDIDTDSDTYGVEFNSVNDVDTDSDTEDIKVNSNNDVRTDGDADGVEFNHGNGVCNEQGKENFDGYKCISDVTNDDIRDMEFNTEDEAIKFYVLFAKYHGFEEGVNDRKNKKNGSRSTLTIRTNCSAKLRVVYDFVRTIWRVSVFKPSHNHELAPLRFVHLMPNYRKLSEVDKQVASGLHSQGVRTCHILGFLMGQKGGHEGLGFIKKDLYNFTDHQARVKIQDGDTFATLSYFQGKADTDTSFFSEFTFTDDGRLENIFWADSTSRFDYECFGDVVAFDTTYRKNKYGKPLVIFSGYNHHGETTIFACALICDETIETYKWVLNLFSKAMYDKHPKAVITDGDKSMRKAIRVVFPNTRHRLCAWHLHRNAVQHVKNSKFLEEFKSLMYSPCTPEKFESEWKRVVENFDLSNNRWVKRIYRLKRMWASAYMRDHFLCGVRTTSICEGVNSFIKKYVRHKNSLVDFLHNFERALKEYRHNELFSDFKSFYYHPMLTTALTTFESEASKIFTGKKFKDVKKAIEDVVALSVIERDEDEDGNIVIFKVNVFGKKDVAFSVYLDKLQTKFLCDCRRFERRGLPCSHIICAMKYDNMDVFPESLICKRWTKTAKSDHISSFASQEGNDEKMTMFRRGALAAAFNSLCNVSCKSASDYKEALEGIYSVCNKINSRHEGNGHDKDKASKFVASDKANKFVANDPLMNLLELVSCLKIKGEKASPIESDNESKSLSLSMSNDMNDDIHSVAVSNGGREVEKSTGITRKRECDNVAFSTQDSVNKRKTKTNTSTRKGDACVTPNITINIDNNGVTRDFGHEKSTLKQDSHCASWNHNVGYGVNYFNMHYGVPNNGGSIFPQFPPTTTLSSHSNTALHTGTHNVPSYTPFMSALKNVELLAKHRSDYCGPKH*