AlfalfaGEDB | Msa1342190

M. sativa cultivar zhongmu-4 / Msa1342190

KEGG: K17604
GO: -
PFAM: PF03101.18

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1342190	PNX73002.1	63.625	822	214	9	105	898	1	765	0.0	1046

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1342190	sp\|Q9SZL8\|FRS5_ARATH	30.261	651	403	14	23	638	4	638	1.39e-84	291

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1342190	A0A2K3L384	63.625	822	214	9	105	898	1	765	0.0	1046

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa1342190	TF	FAR1

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1342190	MtrunA17_Chr2g0287651	42.308	624	330	4	94	690	68	688	6.09e-178	538
Msa1342190	MtrunA17_Chr1g0203051	33.446	592	356	7	64	621	34	621	2.35e-106	343
Msa1342190	MtrunA17_Chr1g0202341	30.680	603	367	10	100	668	50	635	1.67e-88	296
Msa1342190	MtrunA17_Chr5g0448761	30.877	570	350	9	105	636	64	627	4.54e-87	295
Msa1342190	MtrunA17_Chr8g0363841	29.144	549	366	8	147	680	88	628	4.99e-80	273
Msa1342190	MtrunA17_Chr2g0324011	28.356	596	386	6	95	655	4	593	2.18e-79	269
Msa1342190	MtrunA17_Chr2g0296781	29.542	633	391	14	105	694	1	621	2.79e-79	273
Msa1342190	MtrunA17_Chr6g0477261	34.813	428	264	6	218	634	22	445	5.09e-78	267
Msa1342190	MtrunA17_Chr5g0441581	28.670	579	373	11	138	697	85	642	1.24e-77	267
Msa1342190	MtrunA17_Chr3g0082121	29.654	607	377	12	104	677	46	635	1.83e-75	261

Showing 1 to 10 of 32 entries

Previous1 2 3 4Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1342190	AT4G38180.1	30.261	651	403	14	23	638	4	638	1.42e-85	291
Msa1342190	AT4G15090.1	30.000	670	416	16	53	684	2	656	3.78e-83	286
Msa1342190	AT4G15090.5	30.000	670	416	16	53	684	2	656	3.78e-83	286
Msa1342190	AT4G15090.3	30.000	670	416	16	53	684	2	656	3.78e-83	286
Msa1342190	AT4G15090.2	30.000	670	416	16	53	684	2	656	3.78e-83	286
Msa1342190	AT4G15090.4	30.000	670	416	16	53	684	2	656	3.78e-83	286
Msa1342190	AT3G22170.2	26.599	688	418	14	52	693	30	676	4.39e-70	249
Msa1342190	AT3G22170.1	26.599	688	418	14	52	693	30	676	4.39e-70	249
Msa1342190	AT2G27110.2	26.521	641	407	14	59	676	14	613	1.94e-66	239
Msa1342190	AT2G27110.1	26.521	641	407	14	59	676	14	613	1.94e-66	239

Showing 1 to 10 of 45 entries

Previous1 2 3 4 5Next

Find 156 sgRNAs with CRISPR-Local

Find 217 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCGGTGATTACTGATG+GGG	0.637407	tig0005289:+42498	Msa1342190:CDS
AAAATGACCATGTTTCGTCG+AGG	0.652304	tig0005289:+43363	Msa1342190:CDS
AAAATTGATCCACCATTATT+TGG	0.177287	tig0005289:-44303	None:intergenic
AAACAATAGAGACATACAAG+TGG	0.671084	tig0005289:+42434	Msa1342190:CDS
AAACATCGCAGTGACTATTG+TGG	0.611836	tig0005289:+44536	Msa1342190:CDS
AAAGGACTTATATAATTTCA+CGG	0.493961	tig0005289:+42111	Msa1342190:CDS
AAAGTCTGATTTGCAAGAGA+TGG	0.531904	tig0005289:+43280	Msa1342190:CDS
AAAGTTTAAAGATGTCAAAA+AGG	0.436388	tig0005289:+43026	Msa1342190:CDS
AAATGACCATGTTTCGTCGA+GGG	0.581274	tig0005289:+43364	Msa1342190:CDS
AAATGATGATATAAGGGATA+TGG	0.309095	tig0005289:+41639	Msa1342190:CDS

Showing 1 to 10 of 156 entries

Previous1 2 3 4 5…16Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TGTATATAGTGATACAGATG+AGG	+	tig0005289:41381-41400	Msa1342190:CDS	30.0%
TCAATTAGTATGCAATAAGG+AGG	+	tig0005289:41778-41797	Msa1342190:intron	30.0%
CAATTAGTATGCAATAAGGA+GGG	+	tig0005289:41779-41798	Msa1342190:intron	30.0%
TATCAACTTCACTCAATTTG+CGG	-	tig0005289:41988-42007	None:intergenic	30.0%
TGTAAGAACATGTCATATCT+TGG	+	tig0005289:42039-42058	Msa1342190:CDS	30.0%
GTAAGAACATGTCATATCTT+GGG	+	tig0005289:42040-42059	Msa1342190:CDS	30.0%
ATATAATTTCACGGATCATC+AGG	+	tig0005289:42120-42139	Msa1342190:CDS	30.0%
CAAGGGTTAAAATACAAGAT+GGG	+	tig0005289:42143-42162	Msa1342190:CDS	30.0%
AAGGGTTAAAATACAAGATG+GGG	+	tig0005289:42144-42163	Msa1342190:CDS	30.0%
GAGTTTACATTTACAGATGA+TGG	+	tig0005289:42229-42248	Msa1342190:CDS	30.0%

Showing 1 to 10 of 217 entries

Previous1 2 3 4 5…22Next

Chromosome	Type	Strat	End	Strand	Name
tig0005289	gene	41346	44571	41346	ID=Msa1342190;Name=Msa1342190
tig0005289	mRNA	41346	44571	41346	ID=Msa1342190-mRNA-1;Parent=Msa1342190;Name=Msa1342190-mRNA-1;_AED=0.28;_eAED=0.30;_QI=0\|0\|0\|0.33\|1\|1\|6\|0\|927
tig0005289	exon	41346	41726	41346	ID=Msa1342190-mRNA-1:exon:3487;Parent=Msa1342190-mRNA-1
tig0005289	exon	41797	43587	41797	ID=Msa1342190-mRNA-1:exon:3488;Parent=Msa1342190-mRNA-1
tig0005289	exon	43688	43774	43688	ID=Msa1342190-mRNA-1:exon:3489;Parent=Msa1342190-mRNA-1
tig0005289	exon	43871	44092	43871	ID=Msa1342190-mRNA-1:exon:3490;Parent=Msa1342190-mRNA-1
tig0005289	exon	44183	44413	44183	ID=Msa1342190-mRNA-1:exon:3491;Parent=Msa1342190-mRNA-1
tig0005289	exon	44500	44571	44500	ID=Msa1342190-mRNA-1:exon:3492;Parent=Msa1342190-mRNA-1
tig0005289	CDS	41346	41726	41346	ID=Msa1342190-mRNA-1:cds;Parent=Msa1342190-mRNA-1
tig0005289	CDS	41797	43587	41797	ID=Msa1342190-mRNA-1:cds;Parent=Msa1342190-mRNA-1
tig0005289	CDS	43688	43774	43688	ID=Msa1342190-mRNA-1:cds;Parent=Msa1342190-mRNA-1
tig0005289	CDS	43871	44092	43871	ID=Msa1342190-mRNA-1:cds;Parent=Msa1342190-mRNA-1
tig0005289	CDS	44183	44413	44183	ID=Msa1342190-mRNA-1:cds;Parent=Msa1342190-mRNA-1
tig0005289	CDS	44500	44571	44500	ID=Msa1342190-mRNA-1:cds;Parent=Msa1342190-mRNA-1

Gene Sequence

>Msa1342190

ATGTCTACATATAGTGAAGCAACATTGCCTTTTGATGTATATAGTGATACAGATGAGGTGGAATTTAATAGTGTTAATGATATTGACACCGATAGTGATACATATGGGGTGGAATTTAACAGTGTTAATGATGTTGACACTGATAGTGATACTGAAGATATAAAAGTTAATAGCAACAACGATGTTCGTACTGATGGAGATGCAGACGGTGTGGAATTTAACCATGGTAATGGTGTTTGCAATGAGCAAGGGAAAGAGAACTTTGATGGCTACAAATGCATCAGTGATGTGACAAATGATGATATAAGGGATATGGAATTCAACACAGAGGATGAAGCTATAAAGTTTTATGTATTATTTGCAAAATACCACGGGTTTGAAGAGGGTGTTAATGATCGAAAAAATAAGAAGAATGGCAGCCGATCTACGCTAACCATTCGAACTAATTGTTCTGCGAAACTTCGAGTAGTCTACGACTTTGTTCGTACGATTTGGAGAGTTTCTGTTTTCAAACCCTCTCACAACCATGAATTAGCTCCTTTGCGTTTTGTCCATTTGATGCCTAATTACCGCAAATTGAGTGAAGTTGATAAACAAGTTGCTAGTGGTCTACATTCGCAAGGTGTAAGAACATGTCATATCTTGGGTTTTTTGATGGGTCAAAAGGGTGGCCATGAAGGACTTGGGTTTATCAAAAAGGACTTATATAATTTCACGGATCATCAGGCAAGGGTTAAAATACAAGATGGGGATACTTTTGCTACTTTGAGTTACTTCCAAGGTAAGGCTGATACTGATACATCATTCTTTTCAGAGTTTACATTTACAGATGATGGACGCCTAGAAAACATTTTTTGGGCAGATTCTACTAGTAGGTTTGACTATGAGTGTTTTGGCGATGTTGTTGCATTTGACACTACCTATAGAAAGAACAAGTATGGAAAACCCCTTGTCATTTTTAGTGGATATAACCACCATGGAGAAACAACCATTTTTGCTTGTGCTTTAATTTGTGATGAAACAATAGAGACATACAAGTGGGTTCTAAATTTGTTTTCAAAGGCCATGTATGACAAACATCCAAAAGCGGTGATTACTGATGGGGATAAATCAATGAGAAAAGCTATCAGAGTTGTGTTTCCAAATACAAGGCATCGCCTTTGCGCCTGGCATTTGCATCGAAATGCTGTTCAACATGTGAAGAATTCAAAATTTTTAGAAGAGTTCAAGTCACTGATGTATTCTCCATGTACACCTGAAAAGTTTGAATCTGAGTGGAAGAGGGTTGTTGAAAATTTTGACCTATCAAACAACAGGTGGGTAAAAAGAATTTATCGGTTGAAGAGAATGTGGGCAAGTGCATACATGCGAGACCATTTTTTGTGTGGTGTTAGAACGACATCAATCTGTGAAGGAGTGAATTCATTTATCAAGAAGTATGTCCGACACAAAAATAGCCTTGTGGATTTCTTGCATAATTTTGAAAGAGCTCTCAAAGAATACAGACATAATGAATTATTTTCTGATTTCAAGTCGTTCTATTATCATCCTATGCTGACAACTGCATTGACTACTTTTGAGTCTGAAGCTTCAAAGATATTCACCGGTAAAAAGTTTAAAGATGTCAAAAAGGCGATAGAGGATGTTGTTGCATTATCAGTCATTGAACGAGATGAAGATGAGGATGGAAACATTGTCATTTTCAAGGTTAATGTATTTGGCAAAAAAGATGTAGCTTTTTCGGTATACCTTGACAAGTTGCAGACGAAATTTTTATGTGATTGTAGACGCTTTGAACGCAGAGGACTGCCATGTTCCCACATTATTTGTGCCATGAAGTATGACAACATGGATGTGTTTCCTGAAAGTCTGATTTGCAAGAGATGGACAAAGACTGCAAAGAGTGATCACATCTCGTCATTTGCCTCCCAAGAAGGTAATGATGAAAAAATGACCATGTTTCGTCGAGGGGCACTTGCCGCTGCGTTCAATAGTCTATGTAATGTTTCGTGTAAGAGCGCAAGTGATTATAAGGAGGCTCTAGAAGGGATTTATAGTGTGTGTAATAAGATAAATAGCCGTCATGAGGGAAATGGACATGACAAGGATAAGGCCAGTAAATTTGTTGCAAGTGATAAGGCCAACAAATTTGTTGCGAATGATCCACTGATGAACTTGCTGGAATTGGTGTCGTGTCTGAAGATCAAGGGGGAGAAGGCTTCACCTATTGAGTCTGATAATGAATCAAAAAGTTTAAGTCTGTCTATGAGTAATGATATGAATGATGACATCCACTCTGTAGCAGTGTCAAATGGTGGACGAGAAGTTGAGAAAAGCACTGGTATTACACGTAAGAGGGAATGTGACAATGTTGCATTTTCAACACAAGACTCTGTCAACAAAAGAAAAACAAAAACAAATACAAGCACTAGAAAGGGTGATGCTTGTGTGACTCCAAATATCACAATCAACATTGATAATAATGGTGTGACCCGTGACTTTGGACATGAAAAATCTACTCTCAAACAAGACAGCCATTGTGCAAGTTGGAACCATAATGTTGGGTATGGTGTTAATTATTTTAATATGCACTACGGGGTGCCAAATAATGGTGGATCAATTTTTCCACAATTCCCTCCGACAACTACCCTATCATCACATTCTAACACTGCTCTGCATACTGGAACACACAATGTTCCGAGTTATACACCGTTTATGAGTGCGTTGAAGAATGTGGAGCTGTTAGCAAAACATCGCAGTGACTATTGTGGACCAAAACATTGA

Protein sequence

>Msa1342190

MSTYSEATLPFDVYSDTDEVEFNSVNDIDTDSDTYGVEFNSVNDVDTDSDTEDIKVNSNNDVRTDGDADGVEFNHGNGVCNEQGKENFDGYKCISDVTNDDIRDMEFNTEDEAIKFYVLFAKYHGFEEGVNDRKNKKNGSRSTLTIRTNCSAKLRVVYDFVRTIWRVSVFKPSHNHELAPLRFVHLMPNYRKLSEVDKQVASGLHSQGVRTCHILGFLMGQKGGHEGLGFIKKDLYNFTDHQARVKIQDGDTFATLSYFQGKADTDTSFFSEFTFTDDGRLENIFWADSTSRFDYECFGDVVAFDTTYRKNKYGKPLVIFSGYNHHGETTIFACALICDETIETYKWVLNLFSKAMYDKHPKAVITDGDKSMRKAIRVVFPNTRHRLCAWHLHRNAVQHVKNSKFLEEFKSLMYSPCTPEKFESEWKRVVENFDLSNNRWVKRIYRLKRMWASAYMRDHFLCGVRTTSICEGVNSFIKKYVRHKNSLVDFLHNFERALKEYRHNELFSDFKSFYYHPMLTTALTTFESEASKIFTGKKFKDVKKAIEDVVALSVIERDEDEDGNIVIFKVNVFGKKDVAFSVYLDKLQTKFLCDCRRFERRGLPCSHIICAMKYDNMDVFPESLICKRWTKTAKSDHISSFASQEGNDEKMTMFRRGALAAAFNSLCNVSCKSASDYKEALEGIYSVCNKINSRHEGNGHDKDKASKFVASDKANKFVANDPLMNLLELVSCLKIKGEKASPIESDNESKSLSLSMSNDMNDDIHSVAVSNGGREVEKSTGITRKRECDNVAFSTQDSVNKRKTKTNTSTRKGDACVTPNITINIDNNGVTRDFGHEKSTLKQDSHCASWNHNVGYGVNYFNMHYGVPNNGGSIFPQFPPTTTLSSHSNTALHTGTHNVPSYTPFMSALKNVELLAKHRSDYCGPKH*