AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1342310

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1342310 MtrunA17_Chr1g0205831 77.348 181 28 2 137 316 2 170 8.93e-90 270
Msa1342310 MtrunA17_Chr1g0205831 58.173 208 52 3 223 428 5 179 6.09e-66 208
Msa1342310 MtrunA17_Chr1g0205831 41.500 200 44 3 17 206 6 142 1.31e-35 129
Msa1342310 MtrunA17_Chr1g0205831 53.947 76 25 1 17 82 77 152 5.52e-15 72.8
Msa1342310 MtrunA17_Chr1g0205821 62.500 216 23 2 1 206 1 168 9.12e-79 241
Msa1342310 MtrunA17_Chr1g0205821 61.081 185 45 2 125 294 1 173 5.24e-66 208
Msa1342310 MtrunA17_Chr1g0205821 61.635 159 55 1 228 386 21 173 7.09e-59 190
Msa1342310 MtrunA17_Chr1g0205821 51.807 83 40 0 309 391 10 92 2.61e-19 85.1
Msa1342310 MtrunA17_Chr1g0205821 50.575 87 33 1 5 81 91 177 1.22e-16 77.4
Msa1342310 MtrunA17_Chr4g0075861 40.613 261 137 5 125 384 1 244 1.35e-43 156
Msa1342310 MtrunA17_Chr4g0075861 35.573 253 108 7 1 208 1 243 2.60e-26 109
Msa1342310 MtrunA17_Chr4g0075861 39.548 177 94 4 237 413 26 189 1.50e-22 98.6
Msa1342310 MtrunA17_Chr4g0075971 41.985 262 132 7 125 384 1 244 5.24e-42 156
Msa1342310 MtrunA17_Chr4g0075971 35.178 253 109 7 1 208 1 243 4.48e-25 107
Msa1342310 MtrunA17_Chr4g0075971 42.135 178 88 6 237 413 26 189 7.65e-23 101
Msa1342310 MtrunA17_Chr7g0218891 33.333 282 163 8 125 395 1 268 5.76e-32 122
Msa1342310 MtrunA17_Chr7g0218891 31.401 207 122 5 224 426 17 207 4.79e-19 86.7
Msa1342310 MtrunA17_Chr7g0218891 27.907 258 132 7 1 206 1 256 9.25e-17 80.1
Msa1342310 MtrunA17_Chr1g0206771 39.634 164 93 3 126 288 5 163 9.18e-29 111
Msa1342310 MtrunA17_Chr1g0206771 37.342 158 86 1 223 380 19 163 1.38e-27 108
Msa1342310 MtrunA17_Chr1g0206771 33.813 139 75 2 2 130 5 136 2.08e-14 71.2
Msa1342310 MtrunA17_Chr1g0205811 51.754 114 47 2 315 428 17 122 4.35e-28 107
Msa1342310 MtrunA17_Chr1g0205811 61.250 80 29 1 129 206 4 83 2.87e-24 97.1
Msa1342310 MtrunA17_Chr1g0205811 52.381 84 40 0 223 306 17 100 4.65e-22 90.9
Msa1342310 MtrunA17_Chr1g0205811 49.495 99 39 2 1 88 1 99 3.43e-20 85.9
Msa1342310 MtrunA17_Chr3g0077891 40.828 169 91 3 135 294 6 174 6.86e-28 108
Msa1342310 MtrunA17_Chr3g0077891 38.462 169 94 4 223 386 11 174 5.93e-23 95.1
Msa1342310 MtrunA17_Chr3g0077891 44.355 124 53 5 27 134 23 146 4.33e-16 75.9
Msa1342310 MtrunA17_Chr3g0077941 40.476 168 92 3 135 294 6 173 1.59e-26 105
Msa1342310 MtrunA17_Chr3g0077941 38.824 170 91 4 223 386 11 173 1.00e-19 86.3
Msa1342310 MtrunA17_Chr3g0077941 42.958 142 63 6 11 135 6 146 9.85e-17 77.8
Msa1342310 MtrunA17_Chr1g0205801 59.740 77 31 0 130 206 5 81 1.08e-24 97.8
Msa1342310 MtrunA17_Chr1g0205801 57.143 84 36 0 223 306 15 98 1.07e-23 95.1
Msa1342310 MtrunA17_Chr1g0205801 55.172 87 38 1 315 401 15 100 1.86e-22 91.7
Msa1342310 MtrunA17_Chr1g0205801 54.839 93 32 1 6 88 5 97 1.91e-22 91.7
Msa1342310 MtrunA17_Chr3g0077911 41.875 160 82 4 223 381 11 160 1.84e-24 99.0
Msa1342310 MtrunA17_Chr3g0077911 40.994 161 81 4 136 289 7 160 1.25e-22 94.0
Msa1342310 MtrunA17_Chr3g0077911 34.211 190 65 4 21 199 13 153 4.97e-17 78.2
Msa1342310 MtrunA17_Chr3g0077911 42.353 85 45 2 315 399 11 91 4.23e-13 67.0
Msa1342310 MtrunA17_Chr3g0077881 42.169 166 86 5 135 291 6 170 1.96e-24 99.4
Msa1342310 MtrunA17_Chr3g0077881 39.286 168 87 5 223 383 11 170 1.02e-20 89.0
Msa1342310 MtrunA17_Chr3g0077881 42.742 124 55 5 27 134 23 146 7.90e-17 78.2
Msa1342310 MtrunA17_Chr3g0077861 40.816 147 79 3 236 381 21 160 2.48e-21 90.5
Msa1342310 MtrunA17_Chr3g0077861 39.752 161 83 4 136 289 7 160 9.67e-21 89.0
Msa1342310 MtrunA17_Chr3g0077861 40.678 118 58 3 23 129 15 131 6.59e-14 69.3
Msa1342310 MtrunA17_Chr5g0415031 32.934 167 103 2 211 374 31 191 9.11e-18 86.3
Msa1342310 MtrunA17_Chr5g0415031 37.815 119 64 1 11 119 41 159 2.76e-17 84.7
Msa1342310 MtrunA17_Chr5g0415031 35.484 155 89 4 135 282 41 191 5.96e-17 83.6
Msa1342310 MtrunA17_Chr5g0415031 38.824 85 52 0 315 399 46 130 1.46e-11 66.6
Msa1342310 MtrunA17_Chr8g0364231 37.500 152 89 2 223 374 45 190 7.12e-17 83.6
Msa1342310 MtrunA17_Chr8g0364231 36.364 154 85 6 137 282 42 190 3.35e-15 78.2
Msa1342310 MtrunA17_Chr8g0364231 31.515 165 90 3 11 165 40 191 8.18e-14 73.9
Msa1342310 MtrunA17_Chr8g0364231 50.000 74 36 1 315 388 45 117 8.60e-13 70.9
Msa1342310 MtrunA17_Chr1g0206781 43.478 92 47 1 298 389 2 88 4.09e-16 74.3
Msa1342310 MtrunA17_Chr1g0206781 43.902 82 46 0 223 304 14 95 8.48e-15 70.5
Msa1342310 MtrunA17_Chr1g0206781 37.288 118 51 2 138 255 12 106 1.81e-13 67.0
Msa1342310 MtrunA17_Chr6g0452021 34.868 152 91 3 223 374 46 189 1.84e-15 78.2
Msa1342310 MtrunA17_Chr6g0452021 34.667 150 91 3 137 282 43 189 1.02e-14 75.9
Msa1342310 MtrunA17_Chr6g0452021 30.061 163 89 5 13 165 43 190 4.55e-12 67.8
Msa1342310 MtrunA17_Chr1g0209201 39.130 138 72 4 122 257 2 129 2.43e-15 72.8
Msa1342310 MtrunA17_Chr1g0209201 39.167 120 57 3 228 347 24 127 2.87e-13 67.0
Msa1342310 MtrunA17_Chr1g0209201 36.111 144 67 6 3 135 10 139 8.84e-13 65.5
Msa1342310 MtrunA17_Chr6g0452001 35.065 154 91 3 135 282 61 211 7.42e-15 77.0
Msa1342310 MtrunA17_Chr6g0452001 32.237 152 97 1 223 374 66 211 2.23e-12 69.3
Msa1342310 MtrunA17_Chr6g0452001 29.091 165 94 3 11 165 61 212 3.95e-12 68.6
Msa1342310 MtrunA17_Chr1g0205861 52.381 63 30 0 137 199 16 78 2.27e-14 69.3
Msa1342310 MtrunA17_Chr8g0364021 44.286 70 39 0 137 206 44 113 1.16e-11 64.7
Msa1342310 MtrunA17_Chr3g0077811 46.053 76 40 1 132 206 8 83 2.89e-11 60.5
Msa1342310 MtrunA17_Chr2g0328701 38.983 118 52 4 1 108 18 125 6.20e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1342310 AT1G27260.1 40.351 171 99 3 223 393 6 173 1.04e-26 107
Msa1342310 AT1G27260.1 36.813 182 101 3 135 306 1 178 3.02e-24 100
Msa1342310 AT1G27260.1 28.713 202 107 8 11 189 1 188 1.97e-11 63.9
Msa1342310 AT1G24230.1 29.084 251 149 7 135 378 12 240 1.12e-21 94.0
Msa1342310 AT1G24230.1 33.133 166 89 2 222 386 16 160 9.42e-20 88.6
Msa1342310 AT1G23810.1 36.000 175 106 4 223 393 17 189 1.64e-21 93.6
Msa1342310 AT1G23810.1 27.907 215 128 7 140 338 17 220 3.49e-14 72.4
Msa1342310 AT1G24250.1 35.503 169 91 5 223 375 17 183 2.42e-19 87.4
Msa1342310 AT1G24250.1 28.319 226 124 8 140 338 17 231 4.39e-14 72.4
Msa1342310 AT1G10450.2 32.759 174 106 4 116 282 10 179 1.75e-16 82.4
Msa1342310 AT1G10450.2 34.868 152 91 2 223 374 36 179 3.44e-13 72.4
Msa1342310 AT1G10450.1 32.759 174 106 4 116 282 10 179 1.75e-16 82.4
Msa1342310 AT1G10450.1 34.868 152 91 2 223 374 36 179 3.44e-13 72.4
Msa1342310 AT1G10450.3 32.759 174 106 4 116 282 61 230 1.82e-16 82.4
Msa1342310 AT1G10450.3 34.868 152 91 2 223 374 87 230 3.25e-13 72.4
Msa1342310 AT3G01320.2 34.286 175 99 6 135 302 55 220 2.26e-15 79.3
Msa1342310 AT3G01320.2 31.250 160 99 2 223 382 60 208 2.03e-12 70.1
Msa1342310 AT3G01320.2 34.375 128 71 3 4 119 46 172 5.48e-12 68.6
Msa1342310 AT3G01320.1 34.286 175 99 6 135 302 55 220 2.52e-15 79.0
Msa1342310 AT3G01320.1 31.250 160 99 2 223 382 60 208 2.32e-12 69.7
Msa1342310 AT3G01320.1 34.375 128 71 3 4 119 46 172 5.64e-12 68.6
Msa1342310 AT5G15020.2 36.184 152 86 4 137 282 52 198 4.31e-15 78.2
Msa1342310 AT5G15020.2 28.090 178 101 4 11 177 50 211 1.37e-12 70.5
Msa1342310 AT5G15020.2 30.921 152 97 2 223 374 55 198 3.36e-11 66.2
Msa1342310 AT5G15020.1 36.184 152 86 4 137 282 52 198 4.44e-15 78.2
Msa1342310 AT5G15020.1 28.090 178 101 4 11 177 50 211 1.31e-12 70.5
Msa1342310 AT5G15020.1 30.921 152 97 2 223 374 55 198 3.43e-11 66.2
Msa1342310 AT1G24190.1 35.669 157 86 5 135 282 12 162 5.31e-15 78.2
Msa1342310 AT1G24190.1 35.484 155 88 6 223 374 17 162 2.99e-13 72.4
Msa1342310 AT1G24190.1 31.214 173 86 5 11 168 12 166 4.28e-11 65.9
Msa1342310 AT1G24190.3 35.669 157 86 5 135 282 12 162 5.41e-15 78.2
Msa1342310 AT1G24190.3 35.484 155 88 6 223 374 17 162 3.54e-13 72.4
Msa1342310 AT1G24190.3 31.214 173 86 5 11 168 12 166 4.14e-11 65.9
Msa1342310 AT1G24190.2 35.669 157 86 5 135 282 12 162 5.45e-15 78.2
Msa1342310 AT1G24190.2 35.484 155 88 6 223 374 17 162 3.24e-13 72.4
Msa1342310 AT1G24190.2 31.214 173 86 5 11 168 12 166 4.24e-11 65.9
Msa1342310 AT1G24200.1 32.895 152 93 2 224 375 18 160 9.75e-15 73.2
Msa1342310 AT1G24200.1 33.129 163 85 6 133 283 10 160 4.93e-13 68.2
Msa1342310 AT1G24200.1 44.578 83 43 2 298 380 3 82 5.42e-12 65.1
Msa1342310 AT1G70060.2 34.545 165 98 4 125 282 2 163 3.32e-14 75.5
Msa1342310 AT1G70060.2 32.895 152 97 1 223 374 17 163 1.44e-13 73.6
Msa1342310 AT1G70060.2 31.953 169 91 4 11 168 12 167 5.74e-13 71.6
Msa1342310 AT1G70060.1 34.545 165 98 4 125 282 2 163 3.32e-14 75.5
Msa1342310 AT1G70060.1 32.895 152 97 1 223 374 17 163 1.44e-13 73.6
Msa1342310 AT1G70060.1 31.953 169 91 4 11 168 12 167 5.74e-13 71.6
Msa1342310 AT1G59890.4 34.416 154 86 4 137 282 45 191 9.39e-13 70.9
Msa1342310 AT1G59890.4 29.518 166 92 3 13 168 45 195 7.35e-12 68.2
Msa1342310 AT1G59890.3 34.416 154 86 4 137 282 45 191 9.91e-13 70.9
Msa1342310 AT1G59890.3 29.518 166 92 3 13 168 45 195 7.82e-12 68.2
Msa1342310 AT1G27280.1 34.028 144 91 2 231 374 4 143 1.04e-12 67.8
Msa1342310 AT1G27280.1 29.949 197 126 4 148 338 4 194 2.11e-12 67.0
Msa1342310 AT1G59890.2 34.416 154 86 4 137 282 45 191 1.08e-12 70.9
Msa1342310 AT1G59890.2 29.518 166 92 3 13 168 45 195 7.37e-12 68.2
Msa1342310 AT1G59890.1 34.416 154 86 4 137 282 45 191 1.11e-12 70.9
Msa1342310 AT1G59890.1 29.518 166 92 3 13 168 45 195 7.50e-12 68.2
Msa1342310 AT1G27220.1 40.260 77 46 0 129 205 6 82 3.53e-12 65.5
Msa1342310 AT5G15025.1 40.741 81 48 0 126 206 36 116 3.73e-12 63.5
Msa1342310 AT1G27270.1 36.129 155 90 4 227 373 21 174 9.82e-12 65.1
Msa1342310 AT5G15040.1 45.161 62 34 0 228 289 11 72 1.51e-11 60.8
Msa1342310 AT5G15040.1 37.681 69 43 0 313 381 4 72 7.14e-11 58.9
Msa1342310 AT5G15040.3 45.161 62 34 0 228 289 11 72 1.51e-11 60.8
Msa1342310 AT5G15040.3 37.681 69 43 0 313 381 4 72 7.14e-11 58.9
Msa1342310 AT5G15040.2 45.161 62 34 0 228 289 11 72 1.51e-11 60.8
Msa1342310 AT5G15040.2 37.681 69 43 0 313 381 4 72 7.14e-11 58.9

Find 65 sgRNAs with CRISPR-Local

Find 294 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTGCTGTTGCAAACGAATT+TGG 0.114157 tig0005338:+20884 None:intergenic
GTCCCAAAAGTAAATCTTTA+TGG 0.189829 tig0005338:+20738 None:intergenic
GTGAAACTCCTACAAGATTT+TGG 0.194654 tig0005338:-24850 Msa1342310:CDS
TGAAACTCCTACATGATTTC+AGG 0.203193 tig0005338:-21066 Msa1342310:CDS
AACTCTAAAATCAATTCTTT+TGG 0.284021 tig0005338:+20517 None:intergenic
AACTCTTACATCAATTCTTT+TGG 0.285232 tig0005338:+24567 None:intergenic
AACTCTCATATCAATTCTTT+TGG 0.286653 tig0005338:+20793 None:intergenic
CTGCTGTTGCAAACGAATTT+GGG 0.300087 tig0005338:+20885 None:intergenic
AACTCTTCTATCAATTCTTT+TGG 0.305538 tig0005338:+21042 None:intergenic
GACTCTTCTATCAATTCTTT+TGG 0.310378 tig0005338:+24825 None:intergenic
AGACCATAAAGATTTACTTT+TGG 0.338463 tig0005338:-20741 Msa1342310:CDS
TGAAGCAATGACGTTTATAA+AGG 0.363280 tig0005338:-21137 Msa1342310:CDS
CGTCATTGCTTCACCAATCA+AGG 0.390356 tig0005338:+21147 None:intergenic
AGTTGCATTTCCAGATAAGA+TGG 0.401348 tig0005338:-20858 Msa1342310:CDS
GGTTACATTTGAAGATAAGA+TGG 0.406022 tig0005338:-24632 Msa1342310:CDS
AGTTGCATTTCAAGATAAGA+TGG 0.422713 tig0005338:-20582 Msa1342310:CDS
AAGCTGTGTTTCAAGATAAG+AGG 0.447897 tig0005338:-24891 Msa1342310:CDS
CACCCTTGCATCGTCAATCA+AGG 0.459246 tig0005338:+24930 None:intergenic
ATGAACAGCTCAAGAAGAAC+AGG 0.465556 tig0005338:-24955 Msa1342310:CDS
ACTTGTGTTTCAAGATAAGA+AGG 0.472355 tig0005338:-21107 Msa1342310:CDS
AGTTGTCAAAGATGGAGTTA+TGG 0.472541 tig0005338:-21023 Msa1342310:CDS
TTCAACATCTTCTTGCCAGC+AGG 0.472583 tig0005338:-20965 Msa1342310:CDS
AGTAGAACTAATCCCTTGAT+TGG 0.477123 tig0005338:-21160 Msa1342310:CDS
AGTCGTCAAAGAAGGAGTTA+TGG 0.477577 tig0005338:-24806 Msa1342310:CDS
ACATGAAATCCCACTTCCAT+TGG 0.486277 tig0005338:-24725 Msa1342310:CDS
CTTCTATTCTTCTTGCCACC+AGG 0.488485 tig0005338:-20929 Msa1342310:CDS
GATAGAAGAGTTGTCAAAGA+TGG 0.492886 tig0005338:-21031 Msa1342310:CDS
GATGAACAACAAGGTGATGC+TGG 0.505510 tig0005338:-20389 Msa1342310:CDS
AATCAAGGGATTAGTTCTAC+TGG 0.506014 tig0005338:+21162 None:intergenic
GAAACTCCTACATGATTTCA+GGG 0.508203 tig0005338:-21065 Msa1342310:CDS
ACACAAAATCTCACTTCCAT+TGG 0.512949 tig0005338:-20417 Msa1342310:CDS
ACACAAAATCTCACTTCCAT+TGG 0.514630 tig0005338:-20693 Msa1342310:CDS
GATAGAAGAGTCGTCAAAGA+AGG 0.515587 tig0005338:-24814 Msa1342310:CDS
AAATCATCATCCAATGGAAG+TGG 0.515740 tig0005338:+24715 None:intergenic
TTCAACATCTTCTTGCCACC+AGG 0.516818 tig0005338:-24748 Msa1342310:CDS
GTCCCTTGATTGACGATGCA+AGG 0.537025 tig0005338:-24933 Msa1342310:CDS
AGCTGTGTTTCAAGATAAGA+GGG 0.537554 tig0005338:-24890 Msa1342310:CDS
CGATGCAAGGGTGTTTGTAA+AGG 0.542038 tig0005338:-24920 Msa1342310:CDS
AACGAATTTGGGAATAGAAG+TGG 0.545086 tig0005338:+20896 None:intergenic
CTCAACACTTGGTTGCCAGC+GGG 0.549872 tig0005338:-20716 Msa1342310:CDS
TGAACTTCAAGTTGATGAAG+TGG 0.554268 tig0005338:-20315 Msa1342310:CDS
CTCAACACTTGGTTGCCAGC+AGG 0.555626 tig0005338:-20440 Msa1342310:CDS
ACGAATTTGGGAATAGAAGT+GGG 0.571692 tig0005338:+20897 None:intergenic
AGTGGGATTTCATCTCCTGC+TGG 0.573929 tig0005338:+20950 None:intergenic
TGTTGTTCATCACCATCCAA+TGG 0.575143 tig0005338:+20401 None:intergenic
TGTTGTTCATCACCATCCAA+TGG 0.575143 tig0005338:+20677 None:intergenic
AGAAGTGGGAATTCATGTCC+TGG 0.583648 tig0005338:+20911 None:intergenic
GGAAGTGGGATTTCATGTCC+TGG 0.588837 tig0005338:+24730 None:intergenic
GTCATTGCTTCACCAATCAA+GGG 0.590508 tig0005338:+21148 None:intergenic
AAAATCTCACTTCCATTGGA+TGG 0.592611 tig0005338:-20413 Msa1342310:CDS
AAAATCTCACTTCCATTGGA+TGG 0.592611 tig0005338:-20689 Msa1342310:CDS
TCCCTTGATTGACGATGCAA+GGG 0.593982 tig0005338:-24932 Msa1342310:CDS
TGTTGTAAATCATCATCCAA+TGG 0.600709 tig0005338:+24709 None:intergenic
GGTGATGAACAACAAGGTGA+TGG 0.600828 tig0005338:-20668 Msa1342310:CDS
ACTCAACACTTGGTTGCCAG+CGG 0.601418 tig0005338:-20717 Msa1342310:CDS
AATCATCATCCAATGGAAGT+GGG 0.616288 tig0005338:+24716 None:intergenic
ACCCTTGCATCGTCAATCAA+GGG 0.616892 tig0005338:+24931 None:intergenic
GGTGGCAAGAAGAATAGAAG+TGG 0.618772 tig0005338:+20932 None:intergenic
TGAACAACAAGGTGATGGAT+CGG 0.624867 tig0005338:-20663 Msa1342310:CDS
AGCGCTCAAAGATCGAGCAA+TGG 0.659577 tig0005338:-24674 Msa1342310:CDS
GTGGCAAGAAGAATAGAAGT+GGG 0.680483 tig0005338:+20933 None:intergenic
AGTGGGAATTCATGTCCTGG+TGG 0.708807 tig0005338:+20914 None:intergenic
AGTGGGATTTCATGTCCTGG+TGG 0.734772 tig0005338:+24733 None:intergenic
TTGGATGGTGATGAACAACA+AGG 0.791947 tig0005338:-20398 Msa1342310:CDS
TTGGATGGTGATGAACAACA+AGG 0.791947 tig0005338:-20674 Msa1342310:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTAAAACAAAACAAAAT+TGG + tig0005338:23469-23488 None:intergenic 10.0%
!! CAAAATTTATTATGAAGATA+TGG - tig0005338:21579-21598 Msa1342310:intron 15.0%
!!! TAAGGTTTTTAAAAAATGTA+TGG - tig0005338:22753-22772 Msa1342310:intron 15.0%
!!! AAATATAAGTTATTGTGTTT+TGG - tig0005338:22839-22858 Msa1342310:intron 15.0%
!! TAATGATTTAAAAAGAAAGT+AGG - tig0005338:22881-22900 Msa1342310:intron 15.0%
!! TTTATATGGATAAAAAACAT+AGG + tig0005338:23101-23120 None:intergenic 15.0%
!!! TTTAATTTGTTTTTAAAACC+CGG + tig0005338:23231-23250 None:intergenic 15.0%
!! GTTTCAAAATTTAAAAAAAC+AGG - tig0005338:23509-23528 Msa1342310:intron 15.0%
!! GTAAAATATAATATAAGTGT+TGG + tig0005338:23585-23604 None:intergenic 15.0%
!!! CAATTATTTTTCTTTCTATT+TGG - tig0005338:23790-23809 Msa1342310:intron 15.0%
!!! AGACCATAAAAATTTACTTT+TGG - tig0005338:20720-20739 Msa1342310:CDS 20.0%
!!! GACCATAAAAATTTACTTTT+GGG - tig0005338:20721-20740 Msa1342310:CDS 20.0%
!!! ATCCCAAAAGTAAATTTTTA+TGG + tig0005338:20726-20745 None:intergenic 20.0%
!!! CATCTTTTTTGTATTATGTA+AGG + tig0005338:21044-21063 None:intergenic 20.0%
!! CTTACATAATACAAAAAAGA+TGG - tig0005338:21042-21061 Msa1342310:CDS 20.0%
!!! ACATTAATTAATGGATTGAT+TGG - tig0005338:21243-21262 Msa1342310:intron 20.0%
!!! AATTATTCTAACTTCAAGTT+AGG - tig0005338:21656-21675 Msa1342310:intron 20.0%
!! AATAAGGTATGACATAAAAA+AGG - tig0005338:21788-21807 Msa1342310:intron 20.0%
!! ATAAGGTATGACATAAAAAA+GGG - tig0005338:21789-21808 Msa1342310:intron 20.0%
!! TAAAACAAAACAAAATTGGA+GGG + tig0005338:23465-23484 None:intergenic 20.0%
!! TTAAAACAAAACAAAATTGG+AGG + tig0005338:23466-23485 None:intergenic 20.0%
!!! TTTCTATACCTTTTGAATTT+TGG - tig0005338:24006-24025 Msa1342310:intron 20.0%
!!! TTCTATACCTTTTGAATTTT+GGG - tig0005338:24007-24026 Msa1342310:intron 20.0%
!!! AACTCTAAAATCAATTCTTT+TGG + tig0005338:24721-24740 None:intergenic 20.0%
!!! AGACCATAAAAATTTACTTT+TGG - tig0005338:20720-20739 Msa1342310:CDS 20.0%
!!! GACCATAAAAATTTACTTTT+GGG - tig0005338:20721-20740 Msa1342310:CDS 20.0%
!! AACTCTTACATCAATTCTTT+TGG + tig0005338:20671-20690 None:intergenic 25.0%
!!! GTCATTTTATAGATCAAACT+AGG + tig0005338:20843-20862 None:intergenic 25.0%
! AGTTTGATCTATAAAATGAC+AGG - tig0005338:20843-20862 Msa1342310:CDS 25.0%
! AGCAGAATCACATTAATTAA+TGG - tig0005338:21234-21253 Msa1342310:intron 25.0%
! ATACGTAAAATTTAGCAGTA+TGG - tig0005338:21435-21454 Msa1342310:intron 25.0%
! TACTATTTAATCGCTGAAAA+AGG - tig0005338:21483-21502 Msa1342310:intron 25.0%
! CTTAGATGAAAGGAATAATA+AGG - tig0005338:21772-21791 Msa1342310:intron 25.0%
! TAAGGTATGACATAAAAAAG+GGG - tig0005338:21790-21809 Msa1342310:intron 25.0%
!!! TTTTTGTTAAAGAGCATTTG+TGG - tig0005338:21834-21853 Msa1342310:intron 25.0%
! AAGCCAAATCATATGTAAAA+AGG - tig0005338:21931-21950 Msa1342310:intron 25.0%
!! GATCCTTTTTACATATGATT+TGG + tig0005338:21937-21956 None:intergenic 25.0%
! CAGTTTATTAATTACACATG+AGG + tig0005338:21974-21993 None:intergenic 25.0%
!!! TTAGGAATATGTTTTTGTTG+GGG + tig0005338:22473-22492 None:intergenic 25.0%
!!! GTTAGGAATATGTTTTTGTT+GGG + tig0005338:22474-22493 None:intergenic 25.0%
! TAGATAAATCAAGACGATAT+CGG + tig0005338:22496-22515 None:intergenic 25.0%
! CTATTATGCATATTACCAAT+TGG - tig0005338:22608-22627 Msa1342310:intron 25.0%
!!! GGTTTTTAAAAAATGTATGG+AGG - tig0005338:22756-22775 Msa1342310:intron 25.0%
! CCAATTAAGTTAAATTCACA+AGG + tig0005338:22913-22932 None:intergenic 25.0%
!! CCTTGTGAATTTAACTTAAT+TGG - tig0005338:22910-22929 Msa1342310:intron 25.0%
! CAACATTTCATAATATTTGC+AGG - tig0005338:22936-22955 Msa1342310:intron 25.0%
! TGTGTGACTTGAATAAAAAA+AGG - tig0005338:23004-23023 Msa1342310:intron 25.0%
! TGACTTGAATAAAAAAAGGT+AGG - tig0005338:23008-23027 Msa1342310:intron 25.0%
! ATGGATAAAAAACATAGGAA+TGG + tig0005338:23096-23115 None:intergenic 25.0%
! TAAAGTGGGATCTATTTATA+TGG + tig0005338:23115-23134 None:intergenic 25.0%
!! AGCACTACATTTTGTTAATT+AGG - tig0005338:23330-23349 Msa1342310:intron 25.0%
! AAAACAAAACAAAATTGGAG+GGG + tig0005338:23464-23483 None:intergenic 25.0%
!!! GAATACTAGTTTTTGAAAAG+TGG - tig0005338:23540-23559 Msa1342310:intron 25.0%
! GTGGAAAATAATGAACATTA+AGG - tig0005338:23559-23578 Msa1342310:intron 25.0%
!!! ACGTGTGTGTTTTTATTTTT+TGG + tig0005338:23701-23720 None:intergenic 25.0%
! ATTGCACTACAATATTTGAA+GGG + tig0005338:23774-23793 None:intergenic 25.0%
! AATTGCACTACAATATTTGA+AGG + tig0005338:23775-23794 None:intergenic 25.0%
!! TTTTTCTTTCTATTTGGCAT+TGG - tig0005338:23796-23815 Msa1342310:intron 25.0%
!! AACTCTTCTATCAATTCTTT+TGG + tig0005338:24196-24215 None:intergenic 25.0%
!! AACTCTCATATCAATTCTTT+TGG + tig0005338:24445-24464 None:intergenic 25.0%
!! AGACCATAAAGATTTACTTT+TGG - tig0005338:24494-24513 Msa1342310:intron 25.0%
!!! GACCATAAAGATTTACTTTT+GGG - tig0005338:24495-24514 Msa1342310:intron 25.0%
!!! GATTTTAGAGTTTTCAAAGA+AGG - tig0005338:24729-24748 Msa1342310:CDS 25.0%
!! GTCCCAAAAGTAAATTTTTA+TGG + tig0005338:24776-24795 None:intergenic 25.0%
! GACTCTTCTATCAATTCTTT+TGG + tig0005338:20413-20432 None:intergenic 30.0%
TGTTGTAAATCATCATCCAA+TGG + tig0005338:20529-20548 None:intergenic 30.0%
! GGCATTTTTAACAACAGTTA+AGG - tig0005338:20582-20601 Msa1342310:CDS 30.0%
GGTTACATTTGAAGATAAGA+TGG - tig0005338:20603-20622 Msa1342310:CDS 30.0%
! TTACATCAATTCTTTTGGCA+CGG + tig0005338:20666-20685 None:intergenic 30.0%
CTATAAAATGACAGGTTCAT+TGG - tig0005338:20851-20870 Msa1342310:CDS 30.0%
CAATCTAAGAAAAGAGCAAA+AGG + tig0005338:20878-20897 None:intergenic 30.0%
TTGATACAATTCTATGTACC+AGG + tig0005338:21082-21101 None:intergenic 30.0%
TCATATTCATAGAATTGTCC+TGG - tig0005338:21109-21128 Msa1342310:CDS 30.0%
TTCTTGTACTTAAATGTACC+AGG + tig0005338:21130-21149 None:intergenic 30.0%
!! TGTGCAAAGTTTTCACTTTT+CGG - tig0005338:21317-21336 Msa1342310:intron 30.0%
!! CCAAATGATTCTAAGATAAC+CGG - tig0005338:21381-21400 Msa1342310:intron 30.0%
!!! ATAGTGCATGATAATGGTTT+TGG + tig0005338:21878-21897 None:intergenic 30.0%
!! ACTTTCTAATGTTACTTTGC+AGG + tig0005338:22367-22386 None:intergenic 30.0%
!! GGTTAGGAATATGTTTTTGT+TGG + tig0005338:22475-22494 None:intergenic 30.0%
TGGAGTGTACAAAAACAAAA+AGG + tig0005338:22537-22556 None:intergenic 30.0%
TCTCATACATTTGGTCATTA+TGG + tig0005338:22557-22576 None:intergenic 30.0%
CAGAATGTATCTCATACATT+TGG + tig0005338:22566-22585 None:intergenic 30.0%
CATTCTGTTCACAAAGATAA+AGG - tig0005338:22579-22598 Msa1342310:intron 30.0%
TTACGACATATATAGCCAAT+TGG + tig0005338:22626-22645 None:intergenic 30.0%
TTCATAATATTTGCAGGAGT+CGG - tig0005338:22942-22961 Msa1342310:intron 30.0%
TAACAAAATGTAGTGCTAAG+TGG + tig0005338:23327-23346 None:intergenic 30.0%
TTGCACTACAATATTTGAAG+GGG + tig0005338:23773-23792 None:intergenic 30.0%
! ATGAATGTTGATGAGGTAAA+AGG + tig0005338:23975-23994 None:intergenic 30.0%
AGATCATATGAATGTTGATG+AGG + tig0005338:23982-24001 None:intergenic 30.0%
TGAAGCAATGACGTTTATAA+AGG - tig0005338:24098-24117 Msa1342310:intron 30.0%
ACTTGTGTTTCAAGATAAGA+AGG - tig0005338:24128-24147 Msa1342310:intron 30.0%
! TCATACTTTTCCATCTTATC+TGG + tig0005338:24390-24409 None:intergenic 30.0%
! GATATGAGAGTTTTCAAAGA+AGG - tig0005338:24453-24472 Msa1342310:intron 30.0%
! AGTTTTCAAAGAAGGAATGA+TGG - tig0005338:24461-24480 Msa1342310:intron 30.0%
GTCCCAAAAGTAAATCTTTA+TGG + tig0005338:24500-24519 None:intergenic 30.0%
AGTTGCATTTCAAGATAAGA+TGG - tig0005338:24653-24672 Msa1342310:CDS 30.0%
! TAGAGTTTTCAAAGAAGGAA+TGG - tig0005338:24734-24753 Msa1342310:CDS 30.0%
AAGCTGTGTTTCAAGATAAG+AGG - tig0005338:20344-20363 Msa1342310:CDS 35.0%
AGCTGTGTTTCAAGATAAGA+GGG - tig0005338:20345-20364 Msa1342310:CDS 35.0%
! GTGAAACTCCTACAAGATTT+TGG - tig0005338:20385-20404 Msa1342310:CDS 35.0%
AATCATCATCCAATGGAAGT+GGG + tig0005338:20522-20541 None:intergenic 35.0%
AAATCATCATCCAATGGAAG+TGG + tig0005338:20523-20542 None:intergenic 35.0%
GATGTAAGAGTTGTCAAAGA+AGG - tig0005338:20679-20698 Msa1342310:CDS 35.0%
AGTTGTCAAAGAAGGAATGA+TGG - tig0005338:20687-20706 Msa1342310:CDS 35.0%
ACACAAAATCTCACTTCCAT+TGG - tig0005338:20768-20787 Msa1342310:CDS 35.0%
AAAATCTCACTTCCATTGGA+TGG - tig0005338:20772-20791 Msa1342310:CDS 35.0%
TATTGTTCATCACCATCCAA+TGG + tig0005338:20787-20806 None:intergenic 35.0%
ACAAGCTTGATTACAATCGT+CGG - tig0005338:20807-20826 Msa1342310:CDS 35.0%
!! ATGGATATGATTTGTTGTCC+TGG - tig0005338:21061-21080 Msa1342310:CDS 35.0%
ACAAGATCCATCATGATTGT+AGG + tig0005338:21280-21299 None:intergenic 35.0%
TTTGCACACTCTCTTATCTA+TGG + tig0005338:21305-21324 None:intergenic 35.0%
CCGGTTATCTTAGAATCATT+TGG + tig0005338:21384-21403 None:intergenic 35.0%
ATAGTGATTACTTTGCATGC+CGG + tig0005338:21403-21422 None:intergenic 35.0%
! ATAAATTTTGCCTCCTCCAA+AGG + tig0005338:21569-21588 None:intergenic 35.0%
CCTTTCATCTAAGTGTTATG+CGG + tig0005338:21765-21784 None:intergenic 35.0%
TAATTACACATGAGGTCAGA+AGG + tig0005338:21966-21985 None:intergenic 35.0%
TAGGACAAGACAAAAACAAG+TGG - tig0005338:22077-22096 Msa1342310:intron 35.0%
AGGACAAGACAAAAACAAGT+GGG - tig0005338:22078-22097 Msa1342310:intron 35.0%
CAAAGATCGACACTTTCAAA+GGG - tig0005338:22204-22223 Msa1342310:intron 35.0%
AGCATAATTTGGACCTCATT+TGG + tig0005338:22241-22260 None:intergenic 35.0%
TCCAAATTATGCTGTAACTG+AGG - tig0005338:22248-22267 Msa1342310:intron 35.0%
ACCTCAGTTACAGCATAATT+TGG + tig0005338:22252-22271 None:intergenic 35.0%
AGGACAATATTTCCGATTCT+TGG + tig0005338:22347-22366 None:intergenic 35.0%
AAAGATGTTACAGTGGTGTA+GGG + tig0005338:22394-22413 None:intergenic 35.0%
AAAAGATGTTACAGTGGTGT+AGG + tig0005338:22395-22414 None:intergenic 35.0%
! AAATCAAGACGATATCGGTT+AGG + tig0005338:22491-22510 None:intergenic 35.0%
TCATAATATTTGCAGGAGTC+GGG - tig0005338:22943-22962 Msa1342310:intron 35.0%
! TCTCGAAAAGTAGAGTGTTT+GGG + tig0005338:22977-22996 None:intergenic 35.0%
! ATCTCGAAAAGTAGAGTGTT+TGG + tig0005338:22978-22997 None:intergenic 35.0%
!!! TGTTTTTAAAACCCGGAAGA+AGG + tig0005338:23224-23243 None:intergenic 35.0%
AAATAGAACGTAGTGATGTG+AGG - tig0005338:23248-23267 Msa1342310:intron 35.0%
AACTACACAGAAACGCAAAT+GGG + tig0005338:23295-23314 None:intergenic 35.0%
AAACTACACAGAAACGCAAA+TGG + tig0005338:23296-23315 None:intergenic 35.0%
TTGATGAGGTAAAAGGTCAA+GGG + tig0005338:23968-23987 None:intergenic 35.0%
AGCAGAACCCAAAATTCAAA+AGG + tig0005338:24017-24036 None:intergenic 35.0%
!! AATCAAGGGATTAGTTCTAC+TGG + tig0005338:24076-24095 None:intergenic 35.0%
AGTAGAACTAATCCCTTGAT+TGG - tig0005338:24075-24094 Msa1342310:intron 35.0%
TGAAACTCCTACATGATTTC+AGG - tig0005338:24169-24188 Msa1342310:intron 35.0%
GAAACTCCTACATGATTTCA+GGG - tig0005338:24170-24189 Msa1342310:intron 35.0%
GATAGAAGAGTTGTCAAAGA+TGG - tig0005338:24204-24223 Msa1342310:intron 35.0%
AGTTGTCAAAGATGGAGTTA+TGG - tig0005338:24212-24231 Msa1342310:intron 35.0%
ACGAATTTGGGAATAGAAGT+GGG + tig0005338:24341-24360 None:intergenic 35.0%
AACGAATTTGGGAATAGAAG+TGG + tig0005338:24342-24361 None:intergenic 35.0%
AGTTGCATTTCCAGATAAGA+TGG - tig0005338:24377-24396 Msa1342310:intron 35.0%
ACACAAAATCTCACTTCCAT+TGG - tig0005338:20768-20787 Msa1342310:CDS 35.0%
AAAATCTCACTTCCATTGGA+TGG - tig0005338:20772-20791 Msa1342310:CDS 35.0%
! AGTTTTCAAAGAAGGAATGG+TGG - tig0005338:24737-24756 Msa1342310:CDS 35.0%
ACACAAAATCTCACTTCCAT+TGG - tig0005338:20768-20787 Msa1342310:CDS 35.0%
AAAATCTCACTTCCATTGGA+TGG - tig0005338:20772-20791 Msa1342310:CDS 35.0%
!! TGAACTTCAAGTTGATGAAG+TGG - tig0005338:24920-24939 Msa1342310:CDS 35.0%
ATGAACAGCTCAAGAAGAAC+AGG - tig0005338:20280-20299 Msa1342310:CDS 40.0%
! TTTTGGCGCCAAAATCTTGT+AGG + tig0005338:20396-20415 None:intergenic 40.0%
GATAGAAGAGTCGTCAAAGA+AGG - tig0005338:20421-20440 Msa1342310:CDS 40.0%
AGTCGTCAAAGAAGGAGTTA+TGG - tig0005338:20429-20448 Msa1342310:CDS 40.0%
ACATGAAATCCCACTTCCAT+TGG - tig0005338:20510-20529 Msa1342310:CDS 40.0%
GCACTCTACGAAGTATACAA+TGG + tig0005338:20982-21001 None:intergenic 40.0%
CCATCATGATTGTAGGTATC+AGG + tig0005338:21273-21292 None:intergenic 40.0%
CCTGATACCTACAATCATGA+TGG - tig0005338:21270-21289 Msa1342310:intron 40.0%
!! ATGTTTTGTTCCACCACCTT+TGG - tig0005338:21550-21569 Msa1342310:intron 40.0%
CCGCATAACACTTAGATGAA+AGG - tig0005338:21762-21781 Msa1342310:intron 40.0%
GGTATGACATAAAAAAGGGG+TGG - tig0005338:21793-21812 Msa1342310:intron 40.0%
ACCATTATCATGCACTATGC+AGG - tig0005338:21880-21899 Msa1342310:intron 40.0%
ACCTGCATAGTGCATGATAA+TGG + tig0005338:21884-21903 None:intergenic 40.0%
AGATTCAATTTGGCTAACCG+TGG + tig0005338:22163-22182 None:intergenic 40.0%
CTTCGGGACTAGATTCAATT+TGG + tig0005338:22173-22192 None:intergenic 40.0%
TCTTTGCATGGAGACTTCTT+CGG + tig0005338:22190-22209 None:intergenic 40.0%
!! TGAAAGTGTCGATCTTTGCA+TGG + tig0005338:22202-22221 None:intergenic 40.0%
GCAAAGATCGACACTTTCAA+AGG - tig0005338:22203-22222 Msa1342310:intron 40.0%
!! TTATGACTTGCTGACATCTC+AGG + tig0005338:22279-22298 None:intergenic 40.0%
ATATTTCCGATTCTTGGCAG+TGG + tig0005338:22341-22360 None:intergenic 40.0%
GAGAGGAAAAGATGTTACAG+TGG + tig0005338:22401-22420 None:intergenic 40.0%
!! TATGTTTTTGTTGGGGTGAG+AGG + tig0005338:22466-22485 None:intergenic 40.0%
CATAATATTTGCAGGAGTCG+GGG - tig0005338:22944-22963 Msa1342310:intron 40.0%
! CTCGAAAAGTAGAGTGTTTG+GGG + tig0005338:22976-22995 None:intergenic 40.0%
CGTCTCAATGACACTAAAGT+GGG + tig0005338:23129-23148 None:intergenic 40.0%
ATACGTAGTGAGTAACGAGT+AGG - tig0005338:23398-23417 Msa1342310:intron 40.0%
GGGGTATGTGACGATTAATT+TGG + tig0005338:23445-23464 None:intergenic 40.0%
!!! ACAATTTTTAGCTGCCGTCT+TGG - tig0005338:23603-23622 Msa1342310:intron 40.0%
!!! CAATTTTTAGCTGCCGTCTT+GGG - tig0005338:23604-23623 Msa1342310:intron 40.0%
! GTTGATGAGGTAAAAGGTCA+AGG + tig0005338:23969-23988 None:intergenic 40.0%
GTCATTGCTTCACCAATCAA+GGG + tig0005338:24090-24109 None:intergenic 40.0%
! TTTTGGCCCTGAAATCATGT+AGG + tig0005338:24179-24198 None:intergenic 40.0%
GTGGCAAGAAGAATAGAAGT+GGG + tig0005338:24305-24324 None:intergenic 40.0%
CTGCTGTTGCAAACGAATTT+GGG + tig0005338:24353-24372 None:intergenic 40.0%
ACTGCTGTTGCAAACGAATT+TGG + tig0005338:24354-24373 None:intergenic 40.0%
!!! TACTTTTGGGACTCAACACT+TGG - tig0005338:24508-24527 Msa1342310:intron 40.0%
TGTTGTTCATCACCATCCAA+TGG + tig0005338:24561-24580 None:intergenic 40.0%
! TTGGATGGTGATGAACAACA+AGG - tig0005338:24561-24580 Msa1342310:intron 40.0%
!! TGAACAACAAGGTGATGGAT+CGG - tig0005338:24572-24591 Msa1342310:intron 40.0%
!!! TACTTTTGGGACTCAACACT+TGG - tig0005338:24508-24527 Msa1342310:intron 40.0%
TGTTGTTCATCACCATCCAA+TGG + tig0005338:24561-24580 None:intergenic 40.0%
! TTGGATGGTGATGAACAACA+AGG - tig0005338:24561-24580 Msa1342310:intron 40.0%
TCCCTTGATTGACGATGCAA+GGG - tig0005338:20303-20322 Msa1342310:CDS 45.0%
ACCCTTGCATCGTCAATCAA+GGG + tig0005338:20307-20326 None:intergenic 45.0%
!! CGATGCAAGGGTGTTTGTAA+AGG - tig0005338:20315-20334 Msa1342310:CDS 45.0%
TTCAACATCTTCTTGCCACC+AGG - tig0005338:20487-20506 Msa1342310:CDS 45.0%
! TTTTGGCACGGTAATCAGCT+AGG + tig0005338:20654-20673 None:intergenic 45.0%
ATTCAACACCTTCTTGCCAG+AGG - tig0005338:20744-20763 Msa1342310:CDS 45.0%
TTCAACACCTTCTTGCCAGA+GGG - tig0005338:20745-20764 Msa1342310:CDS 45.0%
! AGTGAGATTTTGTGTCCCTC+TGG + tig0005338:20763-20782 None:intergenic 45.0%
TCGAACCTAGCAAACTGAGA+TGG - tig0005338:21342-21361 Msa1342310:intron 45.0%
ACCTAGCAAACTGAGATGGA+AGG - tig0005338:21346-21365 Msa1342310:intron 45.0%
CCTAGCAAACTGAGATGGAA+GGG - tig0005338:21347-21366 Msa1342310:intron 45.0%
! TTTTGTTCCACCACCTTTGG+AGG - tig0005338:21553-21572 Msa1342310:intron 45.0%
! AATTTTGCCTCCTCCAAAGG+TGG + tig0005338:21566-21585 None:intergenic 45.0%
!!! TTGGATTGGTTTTGATGGGG+TGG + tig0005338:22026-22045 None:intergenic 45.0%
!!! GGCTTGGATTGGTTTTGATG+GGG + tig0005338:22029-22048 None:intergenic 45.0%
!!! GGGCTTGGATTGGTTTTGAT+GGG + tig0005338:22030-22049 None:intergenic 45.0%
GTCCTACTTTCAGTGCTTTG+TGG + tig0005338:22063-22082 None:intergenic 45.0%
CCGTGGCATTATTCCTACAA+CGG + tig0005338:22146-22165 None:intergenic 45.0%
CCGTTGTAGGAATAATGCCA+CGG - tig0005338:22143-22162 Msa1342310:intron 45.0%
CTTTGCATGGAGACTTCTTC+GGG + tig0005338:22189-22208 None:intergenic 45.0%
! GGACCTTTTTGTGCCAAATG+AGG - tig0005338:22225-22244 Msa1342310:intron 45.0%
GGACCTCATTTGGCACAAAA+AGG + tig0005338:22231-22250 None:intergenic 45.0%
TGGCTCTTGGAATTCGAATG+GGG + tig0005338:22321-22340 None:intergenic 45.0%
GTGGCTCTTGGAATTCGAAT+GGG + tig0005338:22322-22341 None:intergenic 45.0%
AGTGGCTCTTGGAATTCGAA+TGG + tig0005338:22323-22342 None:intergenic 45.0%
GCGTCTCAATGACACTAAAG+TGG + tig0005338:23130-23149 None:intergenic 45.0%
! TAGTGTCATTGAGACGCCAA+AGG - tig0005338:23133-23152 Msa1342310:intron 45.0%
TTTCCCGTTCTTCCTTCTTC+CGG - tig0005338:23209-23228 Msa1342310:intron 45.0%
AAACCCGGAAGAAGGAAGAA+CGG + tig0005338:23216-23235 None:intergenic 45.0%
AGAACGTAGTGATGTGAGGA+AGG - tig0005338:23252-23271 Msa1342310:intron 45.0%
GAACGTAGTGATGTGAGGAA+GGG - tig0005338:23253-23272 Msa1342310:intron 45.0%
AACGTAGTGATGTGAGGAAG+GGG - tig0005338:23254-23273 Msa1342310:intron 45.0%
TGTAGTGCTAAGTGGCAAAG+TGG + tig0005338:23319-23338 None:intergenic 45.0%
!! GGCATTGGCAATAGAAACAC+AGG - tig0005338:23811-23830 Msa1342310:intron 45.0%
CTGGAGCTGTTCATCTTGAA+GGG + tig0005338:24057-24076 None:intergenic 45.0%
ACTGGAGCTGTTCATCTTGA+AGG + tig0005338:24058-24077 None:intergenic 45.0%
CGTCATTGCTTCACCAATCA+AGG + tig0005338:24091-24110 None:intergenic 45.0%
TTCAACATCTTCTTGCCAGC+AGG - tig0005338:24270-24289 Msa1342310:intron 45.0%
GGTGGCAAGAAGAATAGAAG+TGG + tig0005338:24306-24325 None:intergenic 45.0%
CTTCTATTCTTCTTGCCACC+AGG - tig0005338:24306-24325 Msa1342310:intron 45.0%
AGAAGTGGGAATTCATGTCC+TGG + tig0005338:24327-24346 None:intergenic 45.0%
GGTGATGAACAACAAGGTGA+TGG - tig0005338:24567-24586 Msa1342310:intron 45.0%
! AGTGAGATTTTGTGTCCTGC+TGG + tig0005338:24813-24832 None:intergenic 45.0%
GATGAACAACAAGGTGATGC+TGG - tig0005338:24846-24865 Msa1342310:CDS 45.0%
GTCCCTTGATTGACGATGCA+AGG - tig0005338:20302-20321 Msa1342310:CDS 50.0%
CACCCTTGCATCGTCAATCA+AGG + tig0005338:20308-20327 None:intergenic 50.0%
AGTGGGATTTCATGTCCTGG+TGG + tig0005338:20505-20524 None:intergenic 50.0%
GGAAGTGGGATTTCATGTCC+TGG + tig0005338:20508-20527 None:intergenic 50.0%
AGCGCTCAAAGATCGAGCAA+TGG - tig0005338:20561-20580 Msa1342310:CDS 50.0%
TTTGTGTCCCTCTGGCAAGA+AGG + tig0005338:20755-20774 None:intergenic 50.0%
! CCCTTCCATCTCAGTTTGCT+AGG + tig0005338:21350-21369 None:intergenic 50.0%
ACACATGAGGTCAGAAGGAG+CGG + tig0005338:21961-21980 None:intergenic 50.0%
!! TTTTGATGGGGTGGACTCTC+AGG + tig0005338:22017-22036 None:intergenic 50.0%
!!! CGGGCTTGGATTGGTTTTGA+TGG + tig0005338:22031-22050 None:intergenic 50.0%
!! GGCCACAAAGCACTGAAAGT+AGG - tig0005338:22058-22077 Msa1342310:intron 50.0%
GCATTATTCCTACAACGGCG+CGG + tig0005338:22141-22160 None:intergenic 50.0%
GGCTCTTGGAATTCGAATGG+GGG + tig0005338:22320-22339 None:intergenic 50.0%
CAAGAGCCACTGCCAAGAAT+CGG - tig0005338:22332-22351 Msa1342310:intron 50.0%
TGGAGAGTGATGGTTGCCTT+TGG + tig0005338:23152-23171 None:intergenic 50.0%
GACGTACGATTGGAGAGTGA+TGG + tig0005338:23162-23181 None:intergenic 50.0%
TTCCCGTTCTTCCTTCTTCC+GGG - tig0005338:23210-23229 Msa1342310:intron 50.0%
AACCCGGAAGAAGGAAGAAC+GGG + tig0005338:23215-23234 None:intergenic 50.0%
AGTGGGATTTCATCTCCTGC+TGG + tig0005338:24288-24307 None:intergenic 50.0%
AGTGGGAATTCATGTCCTGG+TGG + tig0005338:24324-24343 None:intergenic 50.0%
ACTCAACACTTGGTTGCCAG+CGG - tig0005338:24518-24537 Msa1342310:intron 50.0%
! AGTGAGATTTTGTGTCCCGC+TGG + tig0005338:24537-24556 None:intergenic 50.0%
! TGTTCCACCACCTTTGGAGG+AGG - tig0005338:21556-21575 Msa1342310:intron 55.0%
TTTGCCTCCTCCAAAGGTGG+TGG + tig0005338:21563-21582 None:intergenic 55.0%
TTTCAGTGCTTTGTGGCCGC+TGG + tig0005338:22056-22075 None:intergenic 55.0%
CGATTCTTGGCAGTGGCTCT+TGG + tig0005338:22334-22353 None:intergenic 55.0%
TGTTGGGGTGAGAGGCAGAT+GGG + tig0005338:22458-22477 None:intergenic 55.0%
TTGTTGGGGTGAGAGGCAGA+TGG + tig0005338:22459-22478 None:intergenic 55.0%
GCGTTTCGAGACACTCGCTA+AGG - tig0005338:22735-22754 Msa1342310:intron 55.0%
TCCAATCGTACGTCGTCGTG+TGG - tig0005338:23168-23187 Msa1342310:intron 55.0%
CCAATCGTACGTCGTCGTGT+GGG - tig0005338:23169-23188 Msa1342310:intron 55.0%
!! CGTCGTCGTGTGGGTTTTGA+CGG - tig0005338:23178-23197 Msa1342310:intron 55.0%
GTAGTGATGTGAGGAAGGGG+AGG - tig0005338:23257-23276 Msa1342310:intron 55.0%
GTGAGGAAGGGGAGGAAGAA+AGG - tig0005338:23265-23284 Msa1342310:intron 55.0%
TAGCCAAGTCGAGCCCAAGA+CGG + tig0005338:23620-23639 None:intergenic 55.0%
CTCAACACTTGGTTGCCAGC+GGG - tig0005338:24519-24538 Msa1342310:intron 55.0%
CTCAACACTTGGTTGCCAGC+AGG - tig0005338:24519-24538 Msa1342310:intron 55.0%
! CGGTTGTGTGTAGCGGGATG+CGG + tig0005338:22121-22140 None:intergenic 60.0%
AACGGCGCGGTTGTGTGTAG+CGG + tig0005338:22128-22147 None:intergenic 60.0%
ACACACAACCGCGCCGTTGT+AGG - tig0005338:22130-22149 Msa1342310:intron 60.0%
TCGGAGGTTGTGGGTGTGAG+AGG + tig0005338:22418-22437 None:intergenic 60.0%
! GAAGTGGCGTCGGAGGTTGT+GGG + tig0005338:22427-22446 None:intergenic 60.0%
GTTGGGGTGAGAGGCAGATG+GGG + tig0005338:22457-22476 None:intergenic 60.0%
CCCACACGACGACGTACGAT+TGG + tig0005338:23172-23191 None:intergenic 60.0%
CCAATCCAAGCCCGCACCAG+CGG - tig0005338:22037-22056 Msa1342310:intron 65.0%
TGCTTTGTGGCCGCTGGTGC+GGG + tig0005338:22050-22069 None:intergenic 65.0%
GTGCTTTGTGGCCGCTGGTG+CGG + tig0005338:22051-22070 None:intergenic 65.0%
AGCGGGATGCGGTCATGTCG+AGG + tig0005338:22110-22129 None:intergenic 65.0%
ACGGCGCGGTTGTGTGTAGC+GGG + tig0005338:22127-22146 None:intergenic 65.0%
! GGAAGTGGCGTCGGAGGTTG+TGG + tig0005338:22428-22447 None:intergenic 65.0%
! CAGATGGGGAGGCGTGGAAG+TGG + tig0005338:22443-22462 None:intergenic 65.0%
CTGCCGTCTTGGGCTCGACT+TGG - tig0005338:23614-23633 Msa1342310:intron 65.0%
CCGCTGGTGCGGGCTTGGAT+TGG + tig0005338:22040-22059 None:intergenic 70.0%
! AGGCGTGGAAGTGGCGTCGG+AGG + tig0005338:22434-22453 None:intergenic 70.0%
! GGGAGGCGTGGAAGTGGCGT+CGG + tig0005338:22437-22456 None:intergenic 70.0%
GAGAGGCAGATGGGGAGGCG+TGG + tig0005338:22449-22468 None:intergenic 70.0%
GGGGTGAGAGGCAGATGGGG+AGG + tig0005338:22454-22473 None:intergenic 70.0%
TGTGGCCGCTGGTGCGGGCT+TGG + tig0005338:22045-22064 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
tig0005338 gene 20280 24977 20280 ID=Msa1342310;Name=Msa1342310
tig0005338 mRNA 20280 24977 20280 ID=Msa1342310-mRNA-1;Parent=Msa1342310;Name=Msa1342310-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0|0|1|0|0.33|3|0|428
tig0005338 exon 24802 24977 24802 ID=Msa1342310-mRNA-1:exon:3546;Parent=Msa1342310-mRNA-1
tig0005338 exon 24576 24771 24576 ID=Msa1342310-mRNA-1:exon:3545;Parent=Msa1342310-mRNA-1
tig0005338 exon 20280 21194 20280 ID=Msa1342310-mRNA-1:exon:3544;Parent=Msa1342310-mRNA-1
tig0005338 CDS 24802 24977 24802 ID=Msa1342310-mRNA-1:cds;Parent=Msa1342310-mRNA-1
tig0005338 CDS 24576 24771 24576 ID=Msa1342310-mRNA-1:cds;Parent=Msa1342310-mRNA-1
tig0005338 CDS 20280 21194 20280 ID=Msa1342310-mRNA-1:cds;Parent=Msa1342310-mRNA-1
Gene Sequence

>Msa1342310

ATGAACAGCTCAAGAAGAACAGGTCCCTTGATTGACGATGCAAGGGTGTTTGTAAAGGATGTAGAAGCTGTGTTTCAAGATAAGAGGGAGAAGTATGATGAATTCGTGAAACTCCTACAAGATTTTGGCGCCAAAAGAATTGATAGAAGAGTCGTCAAAGAAGGAGTTATGGAGTTATTCAACATCTTCTTGCCACCAGGACATGAAATCCCACTTCCATTGGATGATGATTTACAACAACGTGATCAATCAGCGCTCAAAGATCGAGCAATGGCATTTTTAACAACAGTTAAGGTTACATTTGAAGATAAGATGGAAAAGTTCAATGAATTCTTGAAACTCCTAGCTGATTACCGTGCCAAAAGAATTGATATGAACAGCTCCAGTAGAACTAATCCCTTGATTGGTGAAGCAATGACGTTTATAAAGGATGTAAAACTTGTGTTTCAAGATAAGAAGGAAAAGTTTAATGAATTCATGAAACTCCTACATGATTTCAGGGCCAAAAGAATTGATAGAAGAGTTGTCAAAGATGGAGTTATGGAGTTGTTGAAAGAACATCAAGATTTAATTTCAAGATTCAACATCTTCTTGCCAGCAGGAGATGAAATCCCACTTCTATTCTTCTTGCCACCAGGACATGAATTCCCACTTCTATTCCCAAATTCGTTTGCAACAGCAGTTAAAGTTGCATTTCCAGATAAGATGGAAAAGTATGATGAATTCTTGAAACTCGTAGTTGATTGCAATGCCAAAAGAATTGATATGAGAGTTTTCAAAGAAGGAATGATGGAGTTGTTTAAAGACCATAAAGATTTACTTTTGGGACTCAACACTTGGTTGCCAGCGGGACACAAAATCTCACTTCCATTGGATGGTGATGAACAACAAGGTGATGGATCGGCGCTCAAAGATGAATCAGCACTCGCAGATGCAACAAAGTCGTTTGCAACAGCAGTTAAAGTTGCATTTCAAGATAAGATGGATAAGTATGATGAATTCTTAAAACTCATAATTGATTGTCGTACCAAAAGAATTGATTTTAGAGTTTTCAAAGAAGGAATGGTGGAGTTGTTTAAAGACCATAAAAATTTACTTTTGGGACTCAACACTTGGTTGCCAGCAGGACACAAAATCTCACTTCCATTGGATGGTGATGAACAACAAGGTGATGCTGGATTAGAGTTGAAAGATGCACAGAAAGATGCTGAACAACAAGAGTACAAAGATGAACTTCAAGTTGATGAAGTGGCACTCAAAGATGAGCAGAAAGATGACGAACAATAA
Protein sequence

>Msa1342310

MNSSRRTGPLIDDARVFVKDVEAVFQDKREKYDEFVKLLQDFGAKRIDRRVVKEGVMELFNIFLPPGHEIPLPLDDDLQQRDQSALKDRAMAFLTTVKVTFEDKMEKFNEFLKLLADYRAKRIDMNSSSRTNPLIGEAMTFIKDVKLVFQDKKEKFNEFMKLLHDFRAKRIDRRVVKDGVMELLKEHQDLISRFNIFLPAGDEIPLLFFLPPGHEFPLLFPNSFATAVKVAFPDKMEKYDEFLKLVVDCNAKRIDMRVFKEGMMELFKDHKDLLLGLNTWLPAGHKISLPLDGDEQQGDGSALKDESALADATKSFATAVKVAFQDKMDKYDEFLKLIIDCRTKRIDFRVFKEGMVELFKDHKNLLLGLNTWLPAGHKISLPLDGDEQQGDAGLELKDAQKDAEQQEYKDELQVDEVALKDEQKDDEQ*