AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1343850


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1343850 MtrunA17_Chr2g0289181 45.022 231 32 3 257 392 2 232 1.35e-54 180
Msa1343850 MtrunA17_Chr1g0202461 60.000 60 23 1 246 305 239 297 4.62e-19 88.2
Msa1343850 MtrunA17_Chr7g0248691 49.275 69 35 0 237 305 122 190 1.65e-17 82.8
Msa1343850 MtrunA17_Chr6g0470161 45.455 88 48 0 305 392 32 119 3.08e-17 77.4
Msa1343850 MtrunA17_Chr8g0348311 55.738 61 23 1 245 305 135 191 9.06e-17 80.9
Msa1343850 MtrunA17_Chr8g0366921 50.495 101 43 2 1 101 1 94 1.18e-16 80.1
Msa1343850 MtrunA17_Chr2g0284321 50.746 67 29 1 243 305 5 71 1.04e-15 75.5
Msa1343850 MtrunA17_Chr6g0470151 49.485 97 47 1 1 95 1 97 4.28e-15 76.3
Msa1343850 MtrunA17_Chr8g0379461 65.116 43 15 0 270 312 77 119 4.67e-15 74.3
Msa1343850 MtrunA17_Chr5g0401821 47.143 70 30 1 270 332 200 269 1.03e-14 73.9
Msa1343850 MtrunA17_Chr2g0319961 42.500 80 37 1 242 312 44 123 1.33e-14 73.2
Msa1343850 MtrunA17_Chr7g0270051 46.970 66 28 1 247 305 24 89 1.87e-14 72.8
Msa1343850 MtrunA17_Chr4g0053281 51.471 68 25 2 270 334 267 329 3.00e-14 73.2
Msa1343850 MtrunA17_Chr1g0184691 74.286 35 9 0 270 304 294 328 4.08e-14 73.2
Msa1343850 MtrunA17_Chr2g0293481 43.590 78 31 2 241 305 226 303 8.21e-14 72.8
Msa1343850 MtrunA17_Chr1g0147881 74.286 35 9 0 270 304 263 297 1.12e-13 71.6
Msa1343850 MtrunA17_Chr7g0266611 51.136 88 42 1 305 392 78 164 2.00e-13 67.8
Msa1343850 MtrunA17_Chr7g0228941 46.552 58 26 1 263 320 46 98 3.50e-13 66.2
Msa1343850 MtrunA17_Chr8g0387501 65.789 38 13 0 270 307 130 167 3.56e-13 69.3
Msa1343850 MtrunA17_Chr3g0139021 39.474 76 40 2 246 320 290 360 4.94e-13 70.1
Msa1343850 MtrunA17_Chr4g0071521 71.429 35 10 0 270 304 246 280 8.94e-13 68.6
Msa1343850 MtrunA17_Chr5g0447701 48.438 64 29 2 265 328 88 147 7.37e-12 66.2
Msa1343850 MtrunA17_Chr2g0293901 42.051 195 84 4 1 168 1 193 3.15e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1343850 AT5G52830.1 58.333 60 24 1 246 305 143 201 7.75e-18 84.3
Msa1343850 AT4G01250.1 54.237 59 27 0 247 305 106 164 2.81e-17 82.0
Msa1343850 AT4G23550.1 58.491 53 22 0 253 305 124 176 2.24e-16 79.7
Msa1343850 AT1G29280.1 48.571 70 27 1 245 305 41 110 3.46e-15 75.5
Msa1343850 AT5G45050.1 45.882 85 40 2 236 320 1148 1226 4.71e-15 77.8
Msa1343850 AT5G45050.2 45.882 85 40 2 236 320 1120 1198 4.81e-15 77.8
Msa1343850 AT5G45050.4 45.882 85 40 2 236 320 1009 1087 5.69e-15 77.4
Msa1343850 AT3G58710.1 65.116 43 15 0 270 312 72 114 2.17e-14 73.2
Msa1343850 AT3G58710.2 65.116 43 15 0 270 312 71 113 2.27e-14 73.2
Msa1343850 AT4G31550.1 77.143 35 8 0 270 304 247 281 2.74e-14 73.6
Msa1343850 AT4G31550.2 49.206 63 32 0 270 332 246 308 2.80e-14 73.6
Msa1343850 AT2G24570.1 77.143 35 8 0 270 304 244 278 3.47e-14 73.2
Msa1343850 AT2G23320.1 51.562 64 23 2 270 330 241 299 3.71e-14 73.2
Msa1343850 AT5G28650.1 65.116 43 15 0 270 312 263 305 4.47e-14 73.2
Msa1343850 AT3G04670.1 74.286 35 9 0 270 304 263 297 9.28e-14 72.0
Msa1343850 AT4G24240.1 47.059 68 33 1 240 304 249 316 1.09e-13 72.0
Msa1343850 AT2G30590.1 47.541 61 29 1 247 304 288 348 5.06e-13 70.5
Msa1343850 AT2G34830.2 69.444 36 11 0 270 305 225 260 1.33e-12 69.3
Msa1343850 AT2G34830.1 69.444 36 11 0 270 305 216 251 1.39e-12 69.3
Msa1343850 AT1G30650.1 42.647 68 30 1 249 307 188 255 5.42e-12 67.4
Msa1343850 AT2G38470.1 45.333 75 36 3 253 327 169 238 3.72e-11 65.1

Find 111 sgRNAs with CRISPR-Local

Find 358 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGAAGTCATTTGGTTTAAA+TGG 0.099028 tig0006671:+12971 None:intergenic
GGGTGGGGATGGTGGTGGTC+AGG 0.219889 tig0006671:+12816 Msa1343860:CDS
TTGAGGGAATGCTATGTTAT+TGG 0.232068 tig0006671:+13060 None:intergenic
GATATTGTAGGTGGTGGAGG+TGG 0.278924 tig0006671:+12847 Msa1343860:CDS
TGGATGTGGAGACCCTTTAA+TGG 0.287579 tig0006671:+12215 None:intergenic
GTGGGGATGGTGGTGGTCAG+GGG 0.289879 tig0006671:+12818 Msa1343860:CDS
ATAAATCCAGTTTCAGAATA+AGG 0.301581 tig0006671:+11332 None:intergenic
TATGGACAGAAACCCATTAA+AGG 0.302088 tig0006671:-12228 Msa1343850:CDS
GGTGATGTGGGTGGGGATGG+TGG 0.303024 tig0006671:+12808 Msa1343860:CDS
TGGGGATGGTGGTGGTCAGG+GGG 0.305119 tig0006671:+12819 Msa1343860:CDS
GGTGGGGATGGTGGTGGTCA+GGG 0.307039 tig0006671:+12817 Msa1343860:CDS
TTCACATAACAACAAGATTA+TGG 0.327717 tig0006671:-11411 Msa1343850:CDS
TGGGATATTGTAGGTGGTGG+AGG 0.330741 tig0006671:+12844 Msa1343860:CDS
AACTTGCCTTATTCTGAAAC+TGG 0.331215 tig0006671:-11338 Msa1343850:CDS
ATCAATGCATGCAACAGGTT+TGG 0.338091 tig0006671:+12529 None:intergenic
CACTAAGCAAATCGAGAAAA+AGG 0.340079 tig0006671:-12460 Msa1343850:intron
TCGTGGGCATGGAGGAAATA+TGG 0.346010 tig0006671:-12246 Msa1343850:CDS
GAGTGTTAGGAAATTAAAAT+TGG 0.348469 tig0006671:+12601 None:intergenic
GGGGATGGTGGTGGTCAGGG+GGG 0.349141 tig0006671:+12820 Msa1343860:CDS
TCAATGCATGCAACAGGTTT+GGG 0.360204 tig0006671:+12530 None:intergenic
ATTGTAGGTGGTGGAGGTGG+GGG 0.360558 tig0006671:+12850 Msa1343860:CDS
GATGTGGGTGGGGATGGTGG+TGG 0.361535 tig0006671:+12811 Msa1343860:CDS
TATTGTAGGTGGTGGAGGTG+GGG 0.362235 tig0006671:+12849 Msa1343860:CDS
TCTAAATCTATGAAGTCATT+TGG 0.362957 tig0006671:+12962 None:intergenic
TTGGTCAGATGATTACTTAA+TGG 0.368705 tig0006671:-11261 Msa1343850:CDS
ATATTGTAGGTGGTGGAGGT+GGG 0.369979 tig0006671:+12848 Msa1343860:CDS
GTTGGTGATGTGGGTGGGGA+TGG 0.376997 tig0006671:+12805 Msa1343860:CDS
GTTGTTGTTCCGCGAGTGTT+AGG 0.379748 tig0006671:+12588 None:intergenic
GGATGTGGAGACCCTTTAAT+GGG 0.385486 tig0006671:+12216 None:intergenic
GGATGGGATATTGTAGGTGG+TGG 0.386256 tig0006671:+12841 Msa1343860:CDS
GTAGTGGCCGTATTAGTAAT+GGG 0.386403 tig0006671:+12713 Msa1343860:CDS
GTGTTCGCAGTAGAGATGAT+AGG 0.394801 tig0006671:+12668 Msa1343860:CDS
TGAAGTCATTTGGTTTAAAT+GGG 0.397097 tig0006671:+12972 None:intergenic
AGTAGCTGGGGTGGAGATAG+TGG 0.401287 tig0006671:+12910 Msa1343860:CDS
TAATGTTGGTGATGTGGGTG+GGG 0.404886 tig0006671:+12801 Msa1343860:CDS
ATCCACAAATGTTAGAAACT+TGG 0.408052 tig0006671:-11435 Msa1343850:CDS
AGGGGTCGGGGTGATTATAT+TGG 0.410652 tig0006671:+12688 Msa1343860:CDS
GTTTCAATCGGAGGTGGAGG+AGG 0.417377 tig0006671:+13100 None:intergenic
GTGATATCAATGCATGCAAC+AGG 0.433021 tig0006671:+12524 None:intergenic
GACCCAGCTTCTTCGACAAC+GGG 0.441727 tig0006671:+11458 None:intergenic
AAAGATGGTGTGGTACTTTG+AGG 0.441819 tig0006671:+13043 None:intergenic
AGTGTTAATGTTGGTGATGT+GGG 0.446897 tig0006671:+12796 Msa1343860:CDS
CAGTAGAGATGATAGGGGTC+GGG 0.449702 tig0006671:+12675 Msa1343860:CDS
ACCCAAGTTTCTAACATTTG+TGG 0.449992 tig0006671:+11433 None:intergenic
GTGGTTGTGGTGGTTTCAAT+CGG 0.455405 tig0006671:+13088 None:intergenic
ATGGACAGAAACCCATTAAA+GGG 0.461015 tig0006671:-12227 Msa1343850:CDS
TTAATGTTGGTGATGTGGGT+GGG 0.467691 tig0006671:+12800 Msa1343860:CDS
TATAGCACACCAATGCCGTT+TGG 0.476487 tig0006671:+12295 None:intergenic
TCCACAAATGTTAGAAACTT+GGG 0.479230 tig0006671:-11434 Msa1343850:CDS
GTGGTTTCAATCGGAGGTGG+AGG 0.483897 tig0006671:+13097 None:intergenic
AAGATGGTGTGGTACTTTGA+GGG 0.484465 tig0006671:+13044 None:intergenic
GTTATTGGCCGTGGTGGTTG+TGG 0.488418 tig0006671:+13075 None:intergenic
TTACCCGTTGTCGAAGAAGC+TGG 0.488577 tig0006671:-11461 Msa1343850:CDS
GTTAGGAAATTAAAATTGGT+GGG 0.494516 tig0006671:+12605 None:intergenic
TGGGGTGGAGATAGTGGGGA+TGG 0.497054 tig0006671:+12916 Msa1343860:CDS
AGCAATGCTCAAGTTGTTGT+CGG 0.499521 tig0006671:-11368 Msa1343850:CDS
TTAAATGGGATAAAAGAGAA+TGG 0.500195 tig0006671:+12986 None:intergenic
AGTGGTGGGAGTAGTGATGG+TGG 0.500420 tig0006671:+12751 Msa1343860:CDS
TAAATGGGATAAAAGAGAAT+GGG 0.501373 tig0006671:+12987 None:intergenic
GTAGCTGGGGTGGAGATAGT+GGG 0.503727 tig0006671:+12911 Msa1343860:CDS
GTTAATGTTGGTGATGTGGG+TGG 0.504390 tig0006671:+12799 Msa1343860:CDS
TGTAGTGGCCGTATTAGTAA+TGG 0.506802 tig0006671:+12712 Msa1343860:CDS
TGTTCGCAGTAGAGATGATA+GGG 0.507057 tig0006671:+12669 Msa1343860:CDS
ATGGACTTCAACCGCCTCAA+TGG 0.514519 tig0006671:-11242 Msa1343850:CDS
GTGGTGGTTTCAATCGGAGG+TGG 0.519986 tig0006671:+13094 None:intergenic
GAGTAGTGATGGTGGGAGTG+TGG 0.520200 tig0006671:+12759 Msa1343860:CDS
GTGAAATCATCAAAGAAAGA+TGG 0.521869 tig0006671:+13028 None:intergenic
GTAATAGTATGGAGAGTGGT+GGG 0.523121 tig0006671:+12737 Msa1343860:CDS
ACATAATAACCAAACGGCAT+TGG 0.525701 tig0006671:-12304 Msa1343850:CDS
GAGAGTGGTGGGAGTAGTGA+TGG 0.528944 tig0006671:+12748 Msa1343860:CDS
TGTTAGGAAATTAAAATTGG+TGG 0.530065 tig0006671:+12604 None:intergenic
TGATAACAAACATAACAGCT+TGG 0.533538 tig0006671:-11280 Msa1343850:CDS
GTGGTGGGAGTAGTGATGGT+GGG 0.534801 tig0006671:+12752 Msa1343860:CDS
GGTGATTATATTGGTTGTAG+TGG 0.536550 tig0006671:+12697 Msa1343860:CDS
TAGTGTTAATGTTGGTGATG+TGG 0.540874 tig0006671:+12795 Msa1343860:CDS
TGCTATGTTATTGGCCGTGG+TGG 0.541995 tig0006671:+13069 None:intergenic
GCAGTAGAGATGATAGGGGT+CGG 0.543866 tig0006671:+12674 Msa1343860:CDS
CAGAAAACATAATAACCAAA+CGG 0.550138 tig0006671:-12310 Msa1343850:CDS
AGATTGTCCAGCAAGAAGAA+AGG 0.551728 tig0006671:-11715 Msa1343850:intron
TACCCGTTGTCGAAGAAGCT+GGG 0.554513 tig0006671:-11460 Msa1343850:CDS
AGTAGAGATGATAGGGGTCG+GGG 0.555014 tig0006671:+12676 Msa1343860:CDS
GAATGCTATGTTATTGGCCG+TGG 0.557522 tig0006671:+13066 None:intergenic
GTTGTGGTGGTTTCAATCGG+AGG 0.560812 tig0006671:+13091 None:intergenic
TGACCCAGCTTCTTCGACAA+CGG 0.566165 tig0006671:+11457 None:intergenic
TGGCATACTAGTAGCTGGGG+TGG 0.566316 tig0006671:+12901 Msa1343860:CDS
TTTCAAAAGACTCGTGGGCA+TGG 0.568404 tig0006671:-12257 Msa1343850:CDS
TTAGGAAATTAAAATTGGTG+GGG 0.575907 tig0006671:+12606 None:intergenic
TTATTACAAATGTAGCACTT+TGG 0.580718 tig0006671:-11739 Msa1343850:CDS
TTTCAATCGGAGGTGGAGGA+GGG 0.591027 tig0006671:+13101 None:intergenic
GACTTCAACCGCCTCAATGG+TGG 0.595091 tig0006671:-11239 Msa1343850:CDS
GGGGTGGAGATAGTGGGGAT+GGG 0.599391 tig0006671:+12917 Msa1343860:CDS
AGAATAGAGCACCACCATTG+AGG 0.605565 tig0006671:+11228 None:intergenic
ATTGGCCGTGGTGGTTGTGG+TGG 0.609891 tig0006671:+13078 None:intergenic
GATTTGCTTAGTGCAACTGA+TGG 0.610064 tig0006671:+12470 None:intergenic
ATGAACACTAGTGTTTGTCA+TGG 0.612356 tig0006671:+12643 Msa1343860:CDS
ATGTGTGTGAACCTTGGATG+TGG 0.613865 tig0006671:+12201 None:intergenic
TAGCTGGGGTGGAGATAGTG+GGG 0.614917 tig0006671:+12912 Msa1343860:CDS
ATCATCAAAGAAAGATGGTG+TGG 0.615055 tig0006671:+13033 None:intergenic
TTAAAGGGTCTCCACATCCA+AGG 0.615060 tig0006671:-12212 Msa1343850:intron
GGTAATAGTATGGAGAGTGG+TGG 0.626131 tig0006671:+12736 Msa1343860:CDS
TGAGCTTTCAAAAGACTCGT+GGG 0.628685 tig0006671:-12262 Msa1343850:CDS
TAGTGGCCGTATTAGTAATG+GGG 0.630367 tig0006671:+12714 Msa1343860:CDS
ATGAGCTTTCAAAAGACTCG+TGG 0.638619 tig0006671:-12263 Msa1343850:CDS
GGTGGTAGGAGTGGTAAATG+TGG 0.664560 tig0006671:+13135 None:intergenic
ATGTACATTAGTGTTAATGT+TGG 0.667666 tig0006671:+12787 Msa1343860:CDS
CAAAAGACTCGTGGGCATGG+AGG 0.669284 tig0006671:-12254 Msa1343850:CDS
ATAGAGCACCACCATTGAGG+CGG 0.679111 tig0006671:+11231 None:intergenic
TGAAACCACCACAACCACCA+CGG 0.682811 tig0006671:-13083 Msa1343850:CDS
AGTGGCCGTATTAGTAATGG+GGG 0.703018 tig0006671:+12715 Msa1343860:CDS
ACTTGAGCATTGCTACTCTG+TGG 0.710623 tig0006671:+11377 None:intergenic
GTTCGCAGTAGAGATGATAG+GGG 0.735858 tig0006671:+12670 Msa1343860:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAAATATATAAAATAAT+AGG + tig0006671:11989-12008 None:intergenic 0.0%
!! ATTAAAATATATAAAATAAT+AGG + tig0006671:11989-12008 None:intergenic 0.0%
!! TTAAAAAAGTTATTTATTAG+GGG + tig0006671:12553-12572 None:intergenic 10.0%
!! GATTAAAAAAGTTATTTATT+AGG + tig0006671:12555-12574 None:intergenic 10.0%
!! TTTAATAAAAATGTTGTTAT+TGG - tig0006671:12792-12811 Msa1343850:CDS 10.0%
!! TTAAAAAAGTTATTTATTAG+GGG + tig0006671:12553-12572 None:intergenic 10.0%
!! GATTAAAAAAGTTATTTATT+AGG + tig0006671:12555-12574 None:intergenic 10.0%
!! TTTAATAAAAATGTTGTTAT+TGG - tig0006671:12792-12811 Msa1343850:CDS 10.0%
!! TTCTAATTAAATTCAACATA+TGG - tig0006671:12369-12388 Msa1343850:intron 15.0%
!!! ACAACATTTTTATTAAATGT+TGG + tig0006671:12789-12808 Msa1343860:CDS 15.0%
!! TTCTAATTAAATTCAACATA+TGG - tig0006671:12369-12388 Msa1343850:intron 15.0%
!!! ACAACATTTTTATTAAATGT+TGG + tig0006671:12789-12808 Msa1343860:CDS 15.0%
!! TAGAATTATATGCAATGAAT+AGG + tig0006671:12354-12373 None:intergenic 20.0%
!! ACTTATATTGTGATATATGA+AGG - tig0006671:12744-12763 Msa1343850:CDS 20.0%
!! TAGAATTATATGCAATGAAT+AGG + tig0006671:12354-12373 None:intergenic 20.0%
!! ACTTATATTGTGATATATGA+AGG - tig0006671:12744-12763 Msa1343850:CDS 20.0%
! TAAATGGGATAAAAGAGAAT+GGG + tig0006671:11426-11445 None:intergenic 25.0%
! TTAAATGGGATAAAAGAGAA+TGG + tig0006671:11427-11446 None:intergenic 25.0%
!! TGAAGTCATTTGGTTTAAAT+GGG + tig0006671:11441-11460 None:intergenic 25.0%
!! ATGAAGTCATTTGGTTTAAA+TGG + tig0006671:11442-11461 None:intergenic 25.0%
! TCTAAATCTATGAAGTCATT+TGG + tig0006671:11451-11470 None:intergenic 25.0%
! ATGTACATTAGTGTTAATGT+TGG + tig0006671:11626-11645 None:intergenic 25.0%
! TTAGGAAATTAAAATTGGTG+GGG + tig0006671:11807-11826 None:intergenic 25.0%
! GTTAGGAAATTAAAATTGGT+GGG + tig0006671:11808-11827 None:intergenic 25.0%
! TGTTAGGAAATTAAAATTGG+TGG + tig0006671:11809-11828 None:intergenic 25.0%
! GAGTGTTAGGAAATTAAAAT+TGG + tig0006671:11812-11831 None:intergenic 25.0%
! TATTCTTACGTAACTTAACT+CGG - tig0006671:12044-12063 Msa1343850:intron 25.0%
!! TGTTTTCTGTAAGAAAAGAA+AGG + tig0006671:12089-12108 None:intergenic 25.0%
! CAGAAAACATAATAACCAAA+CGG - tig0006671:12100-12119 Msa1343850:intron 25.0%
!! AATCAATGTTTAAAACTCGA+GGG + tig0006671:12317-12336 None:intergenic 25.0%
!!! GAGTTTTAAACATTGATTGT+AGG - tig0006671:12319-12338 Msa1343850:intron 25.0%
! AACATATGGTATCTTAATCA+CGG - tig0006671:12383-12402 Msa1343850:intron 25.0%
! TAGAGGAAGTAAAAACATAT+TGG + tig0006671:12507-12526 None:intergenic 25.0%
!! AAATTTGTTTATGCTGAAAC+TGG - tig0006671:12602-12621 Msa1343850:CDS 25.0%
! TCTTTAATAAATGATGTTGC+AGG - tig0006671:12646-12665 Msa1343850:CDS 25.0%
! TTATTACAAATGTAGCACTT+TGG - tig0006671:12671-12690 Msa1343850:CDS 25.0%
! TTCACATAACAACAAGATTA+TGG - tig0006671:12999-13018 Msa1343850:CDS 25.0%
! ATAAATCCAGTTTCAGAATA+AGG + tig0006671:13081-13100 None:intergenic 25.0%
! TAAATGGGATAAAAGAGAAT+GGG + tig0006671:11426-11445 None:intergenic 25.0%
! TTAAATGGGATAAAAGAGAA+TGG + tig0006671:11427-11446 None:intergenic 25.0%
!! TGAAGTCATTTGGTTTAAAT+GGG + tig0006671:11441-11460 None:intergenic 25.0%
!! ATGAAGTCATTTGGTTTAAA+TGG + tig0006671:11442-11461 None:intergenic 25.0%
! TCTAAATCTATGAAGTCATT+TGG + tig0006671:11451-11470 None:intergenic 25.0%
! ATGTACATTAGTGTTAATGT+TGG + tig0006671:11626-11645 None:intergenic 25.0%
! TTAGGAAATTAAAATTGGTG+GGG + tig0006671:11807-11826 None:intergenic 25.0%
! GTTAGGAAATTAAAATTGGT+GGG + tig0006671:11808-11827 None:intergenic 25.0%
! TGTTAGGAAATTAAAATTGG+TGG + tig0006671:11809-11828 None:intergenic 25.0%
! GAGTGTTAGGAAATTAAAAT+TGG + tig0006671:11812-11831 None:intergenic 25.0%
! TATTCTTACGTAACTTAACT+CGG - tig0006671:12044-12063 Msa1343850:intron 25.0%
!! TGTTTTCTGTAAGAAAAGAA+AGG + tig0006671:12089-12108 None:intergenic 25.0%
! CAGAAAACATAATAACCAAA+CGG - tig0006671:12100-12119 Msa1343850:intron 25.0%
!! AATCAATGTTTAAAACTCGA+GGG + tig0006671:12317-12336 None:intergenic 25.0%
!!! GAGTTTTAAACATTGATTGT+AGG - tig0006671:12319-12338 Msa1343850:intron 25.0%
! AACATATGGTATCTTAATCA+CGG - tig0006671:12383-12402 Msa1343850:intron 25.0%
! TAGAGGAAGTAAAAACATAT+TGG + tig0006671:12507-12526 None:intergenic 25.0%
!! AAATTTGTTTATGCTGAAAC+TGG - tig0006671:12602-12621 Msa1343850:CDS 25.0%
! TCTTTAATAAATGATGTTGC+AGG - tig0006671:12646-12665 Msa1343850:CDS 25.0%
! TTATTACAAATGTAGCACTT+TGG - tig0006671:12671-12690 Msa1343850:CDS 25.0%
! TTCACATAACAACAAGATTA+TGG - tig0006671:12999-13018 Msa1343850:CDS 25.0%
! ATAAATCCAGTTTCAGAATA+AGG + tig0006671:13081-13100 None:intergenic 25.0%
GTGAAATCATCAAAGAAAGA+TGG + tig0006671:11385-11404 None:intergenic 30.0%
TATTACCCCCATTACTAATA+CGG - tig0006671:11690-11709 Msa1343850:intron 30.0%
!!! TTTTAATTTCCTAACACTCG+CGG - tig0006671:11813-11832 Msa1343850:intron 30.0%
GTATGCATGATAAAAATGAG+CGG + tig0006671:11914-11933 None:intergenic 30.0%
! CAATCAATGTTTAAAACTCG+AGG + tig0006671:12318-12337 None:intergenic 30.0%
! TAAACATTGATTGTAGGCAT+TGG - tig0006671:12325-12344 Msa1343850:intron 30.0%
! AAACATTGATTGTAGGCATT+GGG - tig0006671:12326-12345 Msa1343850:intron 30.0%
GAAAAATATGGTACACTTAG+AGG + tig0006671:12524-12543 None:intergenic 30.0%
TAGGGGCTTAAAGAAAAATA+TGG + tig0006671:12536-12555 None:intergenic 30.0%
! TCAGCATAAACAAATTTTGC+AGG + tig0006671:12599-12618 None:intergenic 30.0%
! AAATTTAGGTTTGCCTAATG+TGG - tig0006671:12828-12847 Msa1343850:CDS 30.0%
CTCTATAATAGTTCCATTTC+CGG + tig0006671:12925-12944 Msa1343860:CDS 30.0%
ATCCACAAATGTTAGAAACT+TGG - tig0006671:12975-12994 Msa1343850:CDS 30.0%
TCCACAAATGTTAGAAACTT+GGG - tig0006671:12976-12995 Msa1343850:CDS 30.0%
TGATAACAAACATAACAGCT+TGG - tig0006671:13130-13149 Msa1343850:CDS 30.0%
TTGGTCAGATGATTACTTAA+TGG - tig0006671:13149-13168 Msa1343850:CDS 30.0%
GTGAAATCATCAAAGAAAGA+TGG + tig0006671:11385-11404 None:intergenic 30.0%
TATTACCCCCATTACTAATA+CGG - tig0006671:11690-11709 Msa1343850:intron 30.0%
!!! TTTTAATTTCCTAACACTCG+CGG - tig0006671:11813-11832 Msa1343850:intron 30.0%
GTATGCATGATAAAAATGAG+CGG + tig0006671:11914-11933 None:intergenic 30.0%
! CAATCAATGTTTAAAACTCG+AGG + tig0006671:12318-12337 None:intergenic 30.0%
! TAAACATTGATTGTAGGCAT+TGG - tig0006671:12325-12344 Msa1343850:intron 30.0%
! AAACATTGATTGTAGGCATT+GGG - tig0006671:12326-12345 Msa1343850:intron 30.0%
GAAAAATATGGTACACTTAG+AGG + tig0006671:12524-12543 None:intergenic 30.0%
TAGGGGCTTAAAGAAAAATA+TGG + tig0006671:12536-12555 None:intergenic 30.0%
! TCAGCATAAACAAATTTTGC+AGG + tig0006671:12599-12618 None:intergenic 30.0%
! AAATTTAGGTTTGCCTAATG+TGG - tig0006671:12828-12847 Msa1343850:CDS 30.0%
CTCTATAATAGTTCCATTTC+CGG + tig0006671:12925-12944 Msa1343860:CDS 30.0%
ATCCACAAATGTTAGAAACT+TGG - tig0006671:12975-12994 Msa1343850:CDS 30.0%
TCCACAAATGTTAGAAACTT+GGG - tig0006671:12976-12995 Msa1343850:CDS 30.0%
TGATAACAAACATAACAGCT+TGG - tig0006671:13130-13149 Msa1343850:CDS 30.0%
TTGGTCAGATGATTACTTAA+TGG - tig0006671:13149-13168 Msa1343850:CDS 30.0%
TTGAGGGAATGCTATGTTAT+TGG + tig0006671:11353-11372 None:intergenic 35.0%
ATCATCAAAGAAAGATGGTG+TGG + tig0006671:11380-11399 None:intergenic 35.0%
!! TTTTTGGCATACTAGTAGCT+GGG + tig0006671:11516-11535 None:intergenic 35.0%
!!! ATTTTTGGCATACTAGTAGC+TGG + tig0006671:11517-11536 None:intergenic 35.0%
!! AGTGTTAATGTTGGTGATGT+GGG + tig0006671:11617-11636 None:intergenic 35.0%
!! TAGTGTTAATGTTGGTGATG+TGG + tig0006671:11618-11637 None:intergenic 35.0%
! TAGTAATGGGGGTAATAGTA+TGG + tig0006671:11687-11706 None:intergenic 35.0%
! GGTGATTATATTGGTTGTAG+TGG + tig0006671:11716-11735 None:intergenic 35.0%
ATGAACACTAGTGTTTGTCA+TGG + tig0006671:11770-11789 None:intergenic 35.0%
CACTAAGCAAATCGAGAAAA+AGG - tig0006671:11950-11969 Msa1343850:intron 35.0%
ACATAATAACCAAACGGCAT+TGG - tig0006671:12106-12125 Msa1343850:intron 35.0%
TATGGACAGAAACCCATTAA+AGG - tig0006671:12182-12201 Msa1343850:intron 35.0%
ATGGACAGAAACCCATTAAA+GGG - tig0006671:12183-12202 Msa1343850:intron 35.0%
! TTTTGAATGTGTGTGAACCT+TGG + tig0006671:12218-12237 None:intergenic 35.0%
TTTAAATGTGCAGCTCATTG+TGG + tig0006671:12459-12478 None:intergenic 35.0%
! TTTTCTACCTTTCTTCTTGC+TGG + tig0006671:12705-12724 Msa1343860:CDS 35.0%
! AAACCTAAATTTGTGATGGG+GGG + tig0006671:12820-12839 Msa1343860:CDS 35.0%
CAAACCTAAATTTGTGATGG+GGG + tig0006671:12821-12840 Msa1343860:CDS 35.0%
GCAAACCTAAATTTGTGATG+GGG + tig0006671:12822-12841 Msa1343860:CDS 35.0%
GGCAAACCTAAATTTGTGAT+GGG + tig0006671:12823-12842 Msa1343860:CDS 35.0%
AGGCAAACCTAAATTTGTGA+TGG + tig0006671:12824-12843 Msa1343860:CDS 35.0%
AACTACAACATCACCACATT+AGG + tig0006671:12844-12863 Msa1343860:CDS 35.0%
GATGTTGTAGTTTGATCATC+CGG - tig0006671:12852-12871 Msa1343850:CDS 35.0%
TGATTGATCAACGAGAACAT+GGG + tig0006671:12890-12909 Msa1343860:CDS 35.0%
TTGATTGATCAACGAGAACA+TGG + tig0006671:12891-12910 Msa1343860:CDS 35.0%
TCAATCAAACATCCCTTATC+CGG - tig0006671:12903-12922 Msa1343850:CDS 35.0%
ATAGTTCCATTTCCGGATAA+GGG + tig0006671:12918-12937 Msa1343860:CDS 35.0%
AATAGTTCCATTTCCGGATA+AGG + tig0006671:12919-12938 Msa1343860:CDS 35.0%
ACCCAAGTTTCTAACATTTG+TGG + tig0006671:12980-12999 None:intergenic 35.0%
!! AACTTGCCTTATTCTGAAAC+TGG - tig0006671:13072-13091 Msa1343850:CDS 35.0%
TTGAGGGAATGCTATGTTAT+TGG + tig0006671:11353-11372 None:intergenic 35.0%
ATCATCAAAGAAAGATGGTG+TGG + tig0006671:11380-11399 None:intergenic 35.0%
!! TTTTTGGCATACTAGTAGCT+GGG + tig0006671:11516-11535 None:intergenic 35.0%
!!! ATTTTTGGCATACTAGTAGC+TGG + tig0006671:11517-11536 None:intergenic 35.0%
!! AGTGTTAATGTTGGTGATGT+GGG + tig0006671:11617-11636 None:intergenic 35.0%
!! TAGTGTTAATGTTGGTGATG+TGG + tig0006671:11618-11637 None:intergenic 35.0%
! TAGTAATGGGGGTAATAGTA+TGG + tig0006671:11687-11706 None:intergenic 35.0%
! GGTGATTATATTGGTTGTAG+TGG + tig0006671:11716-11735 None:intergenic 35.0%
ATGAACACTAGTGTTTGTCA+TGG + tig0006671:11770-11789 None:intergenic 35.0%
CACTAAGCAAATCGAGAAAA+AGG - tig0006671:11950-11969 Msa1343850:intron 35.0%
ACATAATAACCAAACGGCAT+TGG - tig0006671:12106-12125 Msa1343850:intron 35.0%
TATGGACAGAAACCCATTAA+AGG - tig0006671:12182-12201 Msa1343850:intron 35.0%
ATGGACAGAAACCCATTAAA+GGG - tig0006671:12183-12202 Msa1343850:intron 35.0%
! TTTTGAATGTGTGTGAACCT+TGG + tig0006671:12218-12237 None:intergenic 35.0%
TTTAAATGTGCAGCTCATTG+TGG + tig0006671:12459-12478 None:intergenic 35.0%
! TTTTCTACCTTTCTTCTTGC+TGG + tig0006671:12705-12724 Msa1343860:CDS 35.0%
! AAACCTAAATTTGTGATGGG+GGG + tig0006671:12820-12839 Msa1343860:CDS 35.0%
CAAACCTAAATTTGTGATGG+GGG + tig0006671:12821-12840 Msa1343860:CDS 35.0%
GCAAACCTAAATTTGTGATG+GGG + tig0006671:12822-12841 Msa1343860:CDS 35.0%
GGCAAACCTAAATTTGTGAT+GGG + tig0006671:12823-12842 Msa1343860:CDS 35.0%
AGGCAAACCTAAATTTGTGA+TGG + tig0006671:12824-12843 Msa1343860:CDS 35.0%
AACTACAACATCACCACATT+AGG + tig0006671:12844-12863 Msa1343860:CDS 35.0%
GATGTTGTAGTTTGATCATC+CGG - tig0006671:12852-12871 Msa1343850:CDS 35.0%
TGATTGATCAACGAGAACAT+GGG + tig0006671:12890-12909 Msa1343860:CDS 35.0%
TTGATTGATCAACGAGAACA+TGG + tig0006671:12891-12910 Msa1343860:CDS 35.0%
TCAATCAAACATCCCTTATC+CGG - tig0006671:12903-12922 Msa1343850:CDS 35.0%
ATAGTTCCATTTCCGGATAA+GGG + tig0006671:12918-12937 Msa1343860:CDS 35.0%
AATAGTTCCATTTCCGGATA+AGG + tig0006671:12919-12938 Msa1343860:CDS 35.0%
ACCCAAGTTTCTAACATTTG+TGG + tig0006671:12980-12999 None:intergenic 35.0%
!! AACTTGCCTTATTCTGAAAC+TGG - tig0006671:13072-13091 Msa1343850:CDS 35.0%
TTCAAAAATGGTGGTAGGAG+TGG + tig0006671:11287-11306 None:intergenic 40.0%
AAGATGGTGTGGTACTTTGA+GGG + tig0006671:11369-11388 None:intergenic 40.0%
AAAGATGGTGTGGTACTTTG+AGG + tig0006671:11370-11389 None:intergenic 40.0%
!! AAGAGAATGGGCTCTTTTCA+TGG + tig0006671:11414-11433 None:intergenic 40.0%
! TTTTGGCATACTAGTAGCTG+GGG + tig0006671:11515-11534 None:intergenic 40.0%
!!! GTGGTGATGGCATTGATTTT+TGG + tig0006671:11532-11551 None:intergenic 40.0%
!! TTAATGTTGGTGATGTGGGT+GGG + tig0006671:11613-11632 None:intergenic 40.0%
GTAATAGTATGGAGAGTGGT+GGG + tig0006671:11676-11695 None:intergenic 40.0%
TAGTGGCCGTATTAGTAATG+GGG + tig0006671:11699-11718 None:intergenic 40.0%
GTAGTGGCCGTATTAGTAAT+GGG + tig0006671:11700-11719 None:intergenic 40.0%
TGTAGTGGCCGTATTAGTAA+TGG + tig0006671:11701-11720 None:intergenic 40.0%
TGTTCGCAGTAGAGATGATA+GGG + tig0006671:11744-11763 None:intergenic 40.0%
TCAATGCATGCAACAGGTTT+GGG + tig0006671:11883-11902 None:intergenic 40.0%
ATCAATGCATGCAACAGGTT+TGG + tig0006671:11884-11903 None:intergenic 40.0%
GTGATATCAATGCATGCAAC+AGG + tig0006671:11889-11908 None:intergenic 40.0%
! GATTTGCTTAGTGCAACTGA+TGG + tig0006671:11943-11962 None:intergenic 40.0%
ATGAGCTTTCAAAAGACTCG+TGG - tig0006671:12147-12166 Msa1343850:intron 40.0%
TGAGCTTTCAAAAGACTCGT+GGG - tig0006671:12148-12167 Msa1343850:intron 40.0%
! ATGTTTAAAACTCGAGGGTG+CGG + tig0006671:12312-12331 None:intergenic 40.0%
GCTCATTGTGGATAATTGAG+TGG + tig0006671:12447-12466 None:intergenic 40.0%
AGATTGTCCAGCAAGAAGAA+AGG - tig0006671:12695-12714 Msa1343850:CDS 40.0%
AAACATCCCTTATCCGGAAA+TGG - tig0006671:12909-12928 Msa1343850:CDS 40.0%
! AGCAATGCTCAAGTTGTTGT+CGG - tig0006671:13042-13061 Msa1343850:CDS 40.0%
TTCAAAAATGGTGGTAGGAG+TGG + tig0006671:11287-11306 None:intergenic 40.0%
AAGATGGTGTGGTACTTTGA+GGG + tig0006671:11369-11388 None:intergenic 40.0%
AAAGATGGTGTGGTACTTTG+AGG + tig0006671:11370-11389 None:intergenic 40.0%
!! AAGAGAATGGGCTCTTTTCA+TGG + tig0006671:11414-11433 None:intergenic 40.0%
! TTTTGGCATACTAGTAGCTG+GGG + tig0006671:11515-11534 None:intergenic 40.0%
!!! GTGGTGATGGCATTGATTTT+TGG + tig0006671:11532-11551 None:intergenic 40.0%
!! TTAATGTTGGTGATGTGGGT+GGG + tig0006671:11613-11632 None:intergenic 40.0%
GTAATAGTATGGAGAGTGGT+GGG + tig0006671:11676-11695 None:intergenic 40.0%
TAGTGGCCGTATTAGTAATG+GGG + tig0006671:11699-11718 None:intergenic 40.0%
GTAGTGGCCGTATTAGTAAT+GGG + tig0006671:11700-11719 None:intergenic 40.0%
TGTAGTGGCCGTATTAGTAA+TGG + tig0006671:11701-11720 None:intergenic 40.0%
TGTTCGCAGTAGAGATGATA+GGG + tig0006671:11744-11763 None:intergenic 40.0%
TCAATGCATGCAACAGGTTT+GGG + tig0006671:11883-11902 None:intergenic 40.0%
ATCAATGCATGCAACAGGTT+TGG + tig0006671:11884-11903 None:intergenic 40.0%
GTGATATCAATGCATGCAAC+AGG + tig0006671:11889-11908 None:intergenic 40.0%
! GATTTGCTTAGTGCAACTGA+TGG + tig0006671:11943-11962 None:intergenic 40.0%
ATGAGCTTTCAAAAGACTCG+TGG - tig0006671:12147-12166 Msa1343850:intron 40.0%
TGAGCTTTCAAAAGACTCGT+GGG - tig0006671:12148-12167 Msa1343850:intron 40.0%
! ATGTTTAAAACTCGAGGGTG+CGG + tig0006671:12312-12331 None:intergenic 40.0%
GCTCATTGTGGATAATTGAG+TGG + tig0006671:12447-12466 None:intergenic 40.0%
AGATTGTCCAGCAAGAAGAA+AGG - tig0006671:12695-12714 Msa1343850:CDS 40.0%
AAACATCCCTTATCCGGAAA+TGG - tig0006671:12909-12928 Msa1343850:CDS 40.0%
! AGCAATGCTCAAGTTGTTGT+CGG - tig0006671:13042-13061 Msa1343850:CDS 40.0%
GGGTCTTCAAAAATGGTGGT+AGG + tig0006671:11292-11311 None:intergenic 45.0%
AGGAGGGTCTTCAAAAATGG+TGG + tig0006671:11296-11315 None:intergenic 45.0%
TGGAGGAGGGTCTTCAAAAA+TGG + tig0006671:11299-11318 None:intergenic 45.0%
GTGGTTGTGGTGGTTTCAAT+CGG + tig0006671:11325-11344 None:intergenic 45.0%
GAATGCTATGTTATTGGCCG+TGG + tig0006671:11347-11366 None:intergenic 45.0%
!! ATATTGTAGGTGGTGGAGGT+GGG + tig0006671:11565-11584 None:intergenic 45.0%
!! TAATGTTGGTGATGTGGGTG+GGG + tig0006671:11612-11631 None:intergenic 45.0%
!! GTTAATGTTGGTGATGTGGG+TGG + tig0006671:11614-11633 None:intergenic 45.0%
GGTAATAGTATGGAGAGTGG+TGG + tig0006671:11677-11696 None:intergenic 45.0%
AGTGGCCGTATTAGTAATGG+GGG + tig0006671:11698-11717 None:intergenic 45.0%
GTTCGCAGTAGAGATGATAG+GGG + tig0006671:11743-11762 None:intergenic 45.0%
GTGTTCGCAGTAGAGATGAT+AGG + tig0006671:11745-11764 None:intergenic 45.0%
TATAGCACACCAATGCCGTT+TGG + tig0006671:12118-12137 None:intergenic 45.0%
TTTCAAAAGACTCGTGGGCA+TGG - tig0006671:12153-12172 Msa1343850:intron 45.0%
GGATGTGGAGACCCTTTAAT+GGG + tig0006671:12197-12216 None:intergenic 45.0%
TGGATGTGGAGACCCTTTAA+TGG + tig0006671:12198-12217 None:intergenic 45.0%
TTAAAGGGTCTCCACATCCA+AGG - tig0006671:12198-12217 Msa1343850:intron 45.0%
ATGTGTGTGAACCTTGGATG+TGG + tig0006671:12212-12231 None:intergenic 45.0%
!! AGGGTGCGGTTGTTTGTTTT+AGG + tig0006671:12298-12317 None:intergenic 45.0%
GTACCCCCCATCACAAATTT+AGG - tig0006671:12814-12833 Msa1343850:CDS 45.0%
! ACTTGAGCATTGCTACTCTG+TGG + tig0006671:13036-13055 None:intergenic 45.0%
! AGAATAGAGCACCACCATTG+AGG + tig0006671:13185-13204 None:intergenic 45.0%
GGGTCTTCAAAAATGGTGGT+AGG + tig0006671:11292-11311 None:intergenic 45.0%
AGGAGGGTCTTCAAAAATGG+TGG + tig0006671:11296-11315 None:intergenic 45.0%
TGGAGGAGGGTCTTCAAAAA+TGG + tig0006671:11299-11318 None:intergenic 45.0%
GTGGTTGTGGTGGTTTCAAT+CGG + tig0006671:11325-11344 None:intergenic 45.0%
GAATGCTATGTTATTGGCCG+TGG + tig0006671:11347-11366 None:intergenic 45.0%
!! ATATTGTAGGTGGTGGAGGT+GGG + tig0006671:11565-11584 None:intergenic 45.0%
!! TAATGTTGGTGATGTGGGTG+GGG + tig0006671:11612-11631 None:intergenic 45.0%
!! GTTAATGTTGGTGATGTGGG+TGG + tig0006671:11614-11633 None:intergenic 45.0%
GGTAATAGTATGGAGAGTGG+TGG + tig0006671:11677-11696 None:intergenic 45.0%
AGTGGCCGTATTAGTAATGG+GGG + tig0006671:11698-11717 None:intergenic 45.0%
GTTCGCAGTAGAGATGATAG+GGG + tig0006671:11743-11762 None:intergenic 45.0%
GTGTTCGCAGTAGAGATGAT+AGG + tig0006671:11745-11764 None:intergenic 45.0%
TATAGCACACCAATGCCGTT+TGG + tig0006671:12118-12137 None:intergenic 45.0%
TTTCAAAAGACTCGTGGGCA+TGG - tig0006671:12153-12172 Msa1343850:intron 45.0%
GGATGTGGAGACCCTTTAAT+GGG + tig0006671:12197-12216 None:intergenic 45.0%
TGGATGTGGAGACCCTTTAA+TGG + tig0006671:12198-12217 None:intergenic 45.0%
TTAAAGGGTCTCCACATCCA+AGG - tig0006671:12198-12217 Msa1343850:intron 45.0%
ATGTGTGTGAACCTTGGATG+TGG + tig0006671:12212-12231 None:intergenic 45.0%
!! AGGGTGCGGTTGTTTGTTTT+AGG + tig0006671:12298-12317 None:intergenic 45.0%
GTACCCCCCATCACAAATTT+AGG - tig0006671:12814-12833 Msa1343850:CDS 45.0%
! ACTTGAGCATTGCTACTCTG+TGG + tig0006671:13036-13055 None:intergenic 45.0%
! AGAATAGAGCACCACCATTG+AGG + tig0006671:13185-13204 None:intergenic 45.0%
!! AAATAATATCAATTTATTAT+TGG - tig0006671:12479-12498 Msa1343850:CDS 5.0%
!! ATTAAAAAAGTTATTTATTA+GGG + tig0006671:12554-12573 None:intergenic 5.0%
!! AAATAATATCAATTTATTAT+TGG - tig0006671:12479-12498 Msa1343850:CDS 5.0%
!! ATTAAAAAAGTTATTTATTA+GGG + tig0006671:12554-12573 None:intergenic 5.0%
GGTGGTAGGAGTGGTAAATG+TGG + tig0006671:11278-11297 None:intergenic 50.0%
TTTCAATCGGAGGTGGAGGA+GGG + tig0006671:11312-11331 None:intergenic 50.0%
GTTGTGGTGGTTTCAATCGG+AGG + tig0006671:11322-11341 None:intergenic 50.0%
TGAAACCACCACAACCACCA+CGG - tig0006671:11327-11346 Msa1343850:CDS 50.0%
TGCTATGTTATTGGCCGTGG+TGG + tig0006671:11344-11363 None:intergenic 50.0%
!! TATTGTAGGTGGTGGAGGTG+GGG + tig0006671:11564-11583 None:intergenic 50.0%
!! GATATTGTAGGTGGTGGAGG+TGG + tig0006671:11566-11585 None:intergenic 50.0%
! TGGGATATTGTAGGTGGTGG+AGG + tig0006671:11569-11588 None:intergenic 50.0%
GGATGGGATATTGTAGGTGG+TGG + tig0006671:11572-11591 None:intergenic 50.0%
GGGGGTAATAGTATGGAGAG+TGG + tig0006671:11680-11699 None:intergenic 50.0%
AGGGGTCGGGGTGATTATAT+TGG + tig0006671:11725-11744 None:intergenic 50.0%
AGTAGAGATGATAGGGGTCG+GGG + tig0006671:11737-11756 None:intergenic 50.0%
CAGTAGAGATGATAGGGGTC+GGG + tig0006671:11738-11757 None:intergenic 50.0%
GCAGTAGAGATGATAGGGGT+CGG + tig0006671:11739-11758 None:intergenic 50.0%
! GTTGTTGTTCCGCGAGTGTT+AGG + tig0006671:11825-11844 None:intergenic 50.0%
TCGTGGGCATGGAGGAAATA+TGG - tig0006671:12164-12183 Msa1343850:intron 50.0%
TTACCCGTTGTCGAAGAAGC+TGG - tig0006671:12949-12968 Msa1343850:CDS 50.0%
TACCCGTTGTCGAAGAAGCT+GGG - tig0006671:12950-12969 Msa1343850:CDS 50.0%
TGACCCAGCTTCTTCGACAA+CGG + tig0006671:12956-12975 None:intergenic 50.0%
ATGGACTTCAACCGCCTCAA+TGG - tig0006671:13168-13187 Msa1343850:CDS 50.0%
! ATAGAGCACCACCATTGAGG+CGG + tig0006671:13182-13201 None:intergenic 50.0%
GGTGGTAGGAGTGGTAAATG+TGG + tig0006671:11278-11297 None:intergenic 50.0%
TTTCAATCGGAGGTGGAGGA+GGG + tig0006671:11312-11331 None:intergenic 50.0%
GTTGTGGTGGTTTCAATCGG+AGG + tig0006671:11322-11341 None:intergenic 50.0%
TGAAACCACCACAACCACCA+CGG - tig0006671:11327-11346 Msa1343850:CDS 50.0%
TGCTATGTTATTGGCCGTGG+TGG + tig0006671:11344-11363 None:intergenic 50.0%
!! TATTGTAGGTGGTGGAGGTG+GGG + tig0006671:11564-11583 None:intergenic 50.0%
!! GATATTGTAGGTGGTGGAGG+TGG + tig0006671:11566-11585 None:intergenic 50.0%
! TGGGATATTGTAGGTGGTGG+AGG + tig0006671:11569-11588 None:intergenic 50.0%
GGATGGGATATTGTAGGTGG+TGG + tig0006671:11572-11591 None:intergenic 50.0%
GGGGGTAATAGTATGGAGAG+TGG + tig0006671:11680-11699 None:intergenic 50.0%
AGGGGTCGGGGTGATTATAT+TGG + tig0006671:11725-11744 None:intergenic 50.0%
AGTAGAGATGATAGGGGTCG+GGG + tig0006671:11737-11756 None:intergenic 50.0%
CAGTAGAGATGATAGGGGTC+GGG + tig0006671:11738-11757 None:intergenic 50.0%
GCAGTAGAGATGATAGGGGT+CGG + tig0006671:11739-11758 None:intergenic 50.0%
! GTTGTTGTTCCGCGAGTGTT+AGG + tig0006671:11825-11844 None:intergenic 50.0%
TCGTGGGCATGGAGGAAATA+TGG - tig0006671:12164-12183 Msa1343850:intron 50.0%
TTACCCGTTGTCGAAGAAGC+TGG - tig0006671:12949-12968 Msa1343850:CDS 50.0%
TACCCGTTGTCGAAGAAGCT+GGG - tig0006671:12950-12969 Msa1343850:CDS 50.0%
TGACCCAGCTTCTTCGACAA+CGG + tig0006671:12956-12975 None:intergenic 50.0%
ATGGACTTCAACCGCCTCAA+TGG - tig0006671:13168-13187 Msa1343850:CDS 50.0%
! ATAGAGCACCACCATTGAGG+CGG + tig0006671:13182-13201 None:intergenic 50.0%
GTTTCAATCGGAGGTGGAGG+AGG + tig0006671:11313-11332 None:intergenic 55.0%
GTGGTTTCAATCGGAGGTGG+AGG + tig0006671:11316-11335 None:intergenic 55.0%
GTGGTGGTTTCAATCGGAGG+TGG + tig0006671:11319-11338 None:intergenic 55.0%
GTTATTGGCCGTGGTGGTTG+TGG + tig0006671:11338-11357 None:intergenic 55.0%
TAGCTGGGGTGGAGATAGTG+GGG + tig0006671:11501-11520 None:intergenic 55.0%
GTAGCTGGGGTGGAGATAGT+GGG + tig0006671:11502-11521 None:intergenic 55.0%
AGTAGCTGGGGTGGAGATAG+TGG + tig0006671:11503-11522 None:intergenic 55.0%
TGGCATACTAGTAGCTGGGG+TGG + tig0006671:11512-11531 None:intergenic 55.0%
!! ATTGTAGGTGGTGGAGGTGG+GGG + tig0006671:11563-11582 None:intergenic 55.0%
GGGGGATGGGATATTGTAGG+TGG + tig0006671:11575-11594 None:intergenic 55.0%
CAGGGGGGATGGGATATTGT+AGG + tig0006671:11578-11597 None:intergenic 55.0%
!! GAGTAGTGATGGTGGGAGTG+TGG + tig0006671:11654-11673 None:intergenic 55.0%
! GTGGTGGGAGTAGTGATGGT+GGG + tig0006671:11661-11680 None:intergenic 55.0%
! AGTGGTGGGAGTAGTGATGG+TGG + tig0006671:11662-11681 None:intergenic 55.0%
! GAGAGTGGTGGGAGTAGTGA+TGG + tig0006671:11665-11684 None:intergenic 55.0%
CAAAAGACTCGTGGGCATGG+AGG - tig0006671:12156-12175 Msa1343850:intron 55.0%
! ACATGGGCATTGCTGCTCTC+CGG + tig0006671:12874-12893 Msa1343860:CDS 55.0%
GACCCAGCTTCTTCGACAAC+GGG + tig0006671:12955-12974 None:intergenic 55.0%
GACTTCAACCGCCTCAATGG+TGG - tig0006671:13171-13190 Msa1343850:CDS 55.0%
GTTTCAATCGGAGGTGGAGG+AGG + tig0006671:11313-11332 None:intergenic 55.0%
GTGGTTTCAATCGGAGGTGG+AGG + tig0006671:11316-11335 None:intergenic 55.0%
GTGGTGGTTTCAATCGGAGG+TGG + tig0006671:11319-11338 None:intergenic 55.0%
GTTATTGGCCGTGGTGGTTG+TGG + tig0006671:11338-11357 None:intergenic 55.0%
TAGCTGGGGTGGAGATAGTG+GGG + tig0006671:11501-11520 None:intergenic 55.0%
GTAGCTGGGGTGGAGATAGT+GGG + tig0006671:11502-11521 None:intergenic 55.0%
AGTAGCTGGGGTGGAGATAG+TGG + tig0006671:11503-11522 None:intergenic 55.0%
TGGCATACTAGTAGCTGGGG+TGG + tig0006671:11512-11531 None:intergenic 55.0%
!! ATTGTAGGTGGTGGAGGTGG+GGG + tig0006671:11563-11582 None:intergenic 55.0%
GGGGGATGGGATATTGTAGG+TGG + tig0006671:11575-11594 None:intergenic 55.0%
CAGGGGGGATGGGATATTGT+AGG + tig0006671:11578-11597 None:intergenic 55.0%
!! GAGTAGTGATGGTGGGAGTG+TGG + tig0006671:11654-11673 None:intergenic 55.0%
! GTGGTGGGAGTAGTGATGGT+GGG + tig0006671:11661-11680 None:intergenic 55.0%
! AGTGGTGGGAGTAGTGATGG+TGG + tig0006671:11662-11681 None:intergenic 55.0%
! GAGAGTGGTGGGAGTAGTGA+TGG + tig0006671:11665-11684 None:intergenic 55.0%
CAAAAGACTCGTGGGCATGG+AGG - tig0006671:12156-12175 Msa1343850:intron 55.0%
! ACATGGGCATTGCTGCTCTC+CGG + tig0006671:12874-12893 Msa1343860:CDS 55.0%
GACCCAGCTTCTTCGACAAC+GGG + tig0006671:12955-12974 None:intergenic 55.0%
GACTTCAACCGCCTCAATGG+TGG - tig0006671:13171-13190 Msa1343850:CDS 55.0%
ATTGGCCGTGGTGGTTGTGG+TGG + tig0006671:11335-11354 None:intergenic 60.0%
!! GGGGTGGAGATAGTGGGGAT+GGG + tig0006671:11496-11515 None:intergenic 60.0%
!! TGGGGTGGAGATAGTGGGGA+TGG + tig0006671:11497-11516 None:intergenic 60.0%
! GGGGGAAGATGTGGTGGTGA+TGG + tig0006671:11545-11564 None:intergenic 60.0%
!! GTTGGTGATGTGGGTGGGGA+TGG + tig0006671:11608-11627 None:intergenic 60.0%
ATTGGCCGTGGTGGTTGTGG+TGG + tig0006671:11335-11354 None:intergenic 60.0%
!! GGGGTGGAGATAGTGGGGAT+GGG + tig0006671:11496-11515 None:intergenic 60.0%
!! TGGGGTGGAGATAGTGGGGA+TGG + tig0006671:11497-11516 None:intergenic 60.0%
! GGGGGAAGATGTGGTGGTGA+TGG + tig0006671:11545-11564 None:intergenic 60.0%
!! GTTGGTGATGTGGGTGGGGA+TGG + tig0006671:11608-11627 None:intergenic 60.0%
GGAGGTGGGGGAAGATGTGG+TGG + tig0006671:11551-11570 None:intergenic 65.0%
GGTGGAGGTGGGGGAAGATG+TGG + tig0006671:11554-11573 None:intergenic 65.0%
!! TGGTGGTGGTCAGGGGGGAT+GGG + tig0006671:11588-11607 None:intergenic 65.0%
!! ATGGTGGTGGTCAGGGGGGA+TGG + tig0006671:11589-11608 None:intergenic 65.0%
!! TGGGGATGGTGGTGGTCAGG+GGG + tig0006671:11594-11613 None:intergenic 65.0%
!! GTGGGGATGGTGGTGGTCAG+GGG + tig0006671:11595-11614 None:intergenic 65.0%
!! GGTGGGGATGGTGGTGGTCA+GGG + tig0006671:11596-11615 None:intergenic 65.0%
! GATGTGGGTGGGGATGGTGG+TGG + tig0006671:11602-11621 None:intergenic 65.0%
GGTGATGTGGGTGGGGATGG+TGG + tig0006671:11605-11624 None:intergenic 65.0%
GGAGGTGGGGGAAGATGTGG+TGG + tig0006671:11551-11570 None:intergenic 65.0%
GGTGGAGGTGGGGGAAGATG+TGG + tig0006671:11554-11573 None:intergenic 65.0%
!! TGGTGGTGGTCAGGGGGGAT+GGG + tig0006671:11588-11607 None:intergenic 65.0%
!! ATGGTGGTGGTCAGGGGGGA+TGG + tig0006671:11589-11608 None:intergenic 65.0%
!! TGGGGATGGTGGTGGTCAGG+GGG + tig0006671:11594-11613 None:intergenic 65.0%
!! GTGGGGATGGTGGTGGTCAG+GGG + tig0006671:11595-11614 None:intergenic 65.0%
!! GGTGGGGATGGTGGTGGTCA+GGG + tig0006671:11596-11615 None:intergenic 65.0%
! GATGTGGGTGGGGATGGTGG+TGG + tig0006671:11602-11621 None:intergenic 65.0%
GGTGATGTGGGTGGGGATGG+TGG + tig0006671:11605-11624 None:intergenic 65.0%
!! GGGGATGGTGGTGGTCAGGG+GGG + tig0006671:11593-11612 None:intergenic 70.0%
!! GGGTGGGGATGGTGGTGGTC+AGG + tig0006671:11597-11616 None:intergenic 70.0%
!! GGGGATGGTGGTGGTCAGGG+GGG + tig0006671:11593-11612 None:intergenic 70.0%
!! GGGTGGGGATGGTGGTGGTC+AGG + tig0006671:11597-11616 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0006671 gene 11223 13209 11223 ID=Msa1343850;Name=Msa1343850
tig0006671 mRNA 11223 13209 11223 ID=Msa1343850-mRNA-1;Parent=Msa1343850;Name=Msa1343850-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|1|1|1|4|0|393
tig0006671 exon 12461 13209 12461 ID=Msa1343850-mRNA-1:exon:4301;Parent=Msa1343850-mRNA-1
tig0006671 exon 12213 12329 12213 ID=Msa1343850-mRNA-1:exon:4300;Parent=Msa1343850-mRNA-1
tig0006671 exon 11716 11764 11716 ID=Msa1343850-mRNA-1:exon:4299;Parent=Msa1343850-mRNA-1
tig0006671 exon 11223 11489 11223 ID=Msa1343850-mRNA-1:exon:4298;Parent=Msa1343850-mRNA-1
tig0006671 CDS 12461 13209 12461 ID=Msa1343850-mRNA-1:cds;Parent=Msa1343850-mRNA-1
tig0006671 CDS 12213 12329 12213 ID=Msa1343850-mRNA-1:cds;Parent=Msa1343850-mRNA-1
tig0006671 CDS 11716 11764 11716 ID=Msa1343850-mRNA-1:cds;Parent=Msa1343850-mRNA-1
tig0006671 CDS 11223 11489 11223 ID=Msa1343850-mRNA-1:cds;Parent=Msa1343850-mRNA-1
Gene Sequence

>Msa1343850

ATGGATAATGATGATTGTGATCTTTTTTCTATTGTACGTAGCTGCAACGCTACCACATTTACCACTCCTACCACCATTTTTGAAGACCCTCCTCCACCTCCGATTGAAACCACCACAACCACCACGGCCAATAACATAGCATTCCCTCAAAGTACCACACCATCTTTCTTTGATGATTTCACTTTTAACCATGAAAAGAGCCCATTCTCTTTTATCCCATTTAAACCAAATGACTTCATAGATTTAGATAAATTGATGATAAATTTCAATCCCATCCCCACTATCTCCACCCCAGCTACTAGTATGCCAAAAATCAATGCCATCACCACCACATCTTCCCCCACCTCCACCACCTACAATATCCCATCCCCCCTGACCACCACCATCCCCACCCACATCACCAACATTAACACTAATGTACATGCTATCCACACTCCCACCATCACTACTCCCACCACTCTCCATACTATTACCCCCATTACTAATACGGCCACTACAACCAATATAATCACCCCGACCCCTATCATCTCTACTGCGAACACTACCATGACAAACACTAGTGTTCATGAAATCAATCAATACCCCACCAATTTTAATTTCCTAACACTCGCGGAACAACAACTGATTCAACAAAACATCAACAATCAAGTGTCTGTTCCCAAACCTGTTGCATGCATTGATATCACAACCGCTCATTTTTATCATGCATACAAACATCCATCAGTTGCACTAAGCAAATCGAGAAAAAGAAAACATAATAACCAAACGGCATTGGTGTGCTATATGAGAGAAGATGAGCTTTCAAAAGACTCGTGGGCATGGAGGAAATATGGACAGAAACCCATTAAAGGGTCTCCACATCCAAGGAGTTATTACAAATGTAGCACTTTGGCAGATTGTCCAGCAAGAAGAAAGAGTCAATTACCCGTTGTCGAAGAAGCTGGGTCATCCACAAATGTTAGAAACTTGGGTTCACATAACAACAAGATTATGGAGTTTGATGAGCCACAGAGTAGCAATGCTCAAGTTGTTGTCGGTGACTCAAACTTGCCTTATTCTGAAACTGGATTTATTAGAAGCTTTGATGATGATGACAATATTTTGATAACAAACATAACAGCTTGGTCAGATGATTACTTAATGGACTTCAACCGCCTCAATGGTGGTGCTCTATTCTCTTAG

Protein sequence

>Msa1343850

MDNDDCDLFSIVRSCNATTFTTPTTIFEDPPPPPIETTTTTTANNIAFPQSTTPSFFDDFTFNHEKSPFSFIPFKPNDFIDLDKLMINFNPIPTISTPATSMPKINAITTTSSPTSTTYNIPSPLTTTIPTHITNINTNVHAIHTPTITTPTTLHTITPITNTATTTNIITPTPIISTANTTMTNTSVHEINQYPTNFNFLTLAEQQLIQQNINNQVSVPKPVACIDITTAHFYHAYKHPSVALSKSRKRKHNNQTALVCYMREDELSKDSWAWRKYGQKPIKGSPHPRSYYKCSTLADCPARRKSQLPVVEEAGSSTNVRNLGSHNNKIMEFDEPQSSNAQVVVGDSNLPYSETGFIRSFDDDDNILITNITAWSDDYLMDFNRLNGGALFS*