Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1343850 | XP_024632663.2 | 57.992 | 488 | 90 | 8 | 1 | 392 | 1 | 469 | 4.49e-155 | 456 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1343850 | sp|Q9FLX8|WRK27_ARATH | 58.333 | 60 | 24 | 1 | 246 | 305 | 143 | 201 | 7.63e-17 | 84.3 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1343850 | A0A072V4M0 | 57.992 | 488 | 90 | 8 | 1 | 392 | 1 | 469 | 2.14e-155 | 456 |
Gene ID | Type | Classification |
---|---|---|
Msa1343850 | TF | WRKY |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1343850 | MtrunA17_Chr2g0289181 | 45.022 | 231 | 32 | 3 | 257 | 392 | 2 | 232 | 1.35e-54 | 180 |
Msa1343850 | MtrunA17_Chr1g0202461 | 60.000 | 60 | 23 | 1 | 246 | 305 | 239 | 297 | 4.62e-19 | 88.2 |
Msa1343850 | MtrunA17_Chr7g0248691 | 49.275 | 69 | 35 | 0 | 237 | 305 | 122 | 190 | 1.65e-17 | 82.8 |
Msa1343850 | MtrunA17_Chr6g0470161 | 45.455 | 88 | 48 | 0 | 305 | 392 | 32 | 119 | 3.08e-17 | 77.4 |
Msa1343850 | MtrunA17_Chr8g0348311 | 55.738 | 61 | 23 | 1 | 245 | 305 | 135 | 191 | 9.06e-17 | 80.9 |
Msa1343850 | MtrunA17_Chr8g0366921 | 50.495 | 101 | 43 | 2 | 1 | 101 | 1 | 94 | 1.18e-16 | 80.1 |
Msa1343850 | MtrunA17_Chr2g0284321 | 50.746 | 67 | 29 | 1 | 243 | 305 | 5 | 71 | 1.04e-15 | 75.5 |
Msa1343850 | MtrunA17_Chr6g0470151 | 49.485 | 97 | 47 | 1 | 1 | 95 | 1 | 97 | 4.28e-15 | 76.3 |
Msa1343850 | MtrunA17_Chr8g0379461 | 65.116 | 43 | 15 | 0 | 270 | 312 | 77 | 119 | 4.67e-15 | 74.3 |
Msa1343850 | MtrunA17_Chr5g0401821 | 47.143 | 70 | 30 | 1 | 270 | 332 | 200 | 269 | 1.03e-14 | 73.9 |
Msa1343850 | MtrunA17_Chr2g0319961 | 42.500 | 80 | 37 | 1 | 242 | 312 | 44 | 123 | 1.33e-14 | 73.2 |
Msa1343850 | MtrunA17_Chr7g0270051 | 46.970 | 66 | 28 | 1 | 247 | 305 | 24 | 89 | 1.87e-14 | 72.8 |
Msa1343850 | MtrunA17_Chr4g0053281 | 51.471 | 68 | 25 | 2 | 270 | 334 | 267 | 329 | 3.00e-14 | 73.2 |
Msa1343850 | MtrunA17_Chr1g0184691 | 74.286 | 35 | 9 | 0 | 270 | 304 | 294 | 328 | 4.08e-14 | 73.2 |
Msa1343850 | MtrunA17_Chr2g0293481 | 43.590 | 78 | 31 | 2 | 241 | 305 | 226 | 303 | 8.21e-14 | 72.8 |
Msa1343850 | MtrunA17_Chr1g0147881 | 74.286 | 35 | 9 | 0 | 270 | 304 | 263 | 297 | 1.12e-13 | 71.6 |
Msa1343850 | MtrunA17_Chr7g0266611 | 51.136 | 88 | 42 | 1 | 305 | 392 | 78 | 164 | 2.00e-13 | 67.8 |
Msa1343850 | MtrunA17_Chr7g0228941 | 46.552 | 58 | 26 | 1 | 263 | 320 | 46 | 98 | 3.50e-13 | 66.2 |
Msa1343850 | MtrunA17_Chr8g0387501 | 65.789 | 38 | 13 | 0 | 270 | 307 | 130 | 167 | 3.56e-13 | 69.3 |
Msa1343850 | MtrunA17_Chr3g0139021 | 39.474 | 76 | 40 | 2 | 246 | 320 | 290 | 360 | 4.94e-13 | 70.1 |
Msa1343850 | MtrunA17_Chr4g0071521 | 71.429 | 35 | 10 | 0 | 270 | 304 | 246 | 280 | 8.94e-13 | 68.6 |
Msa1343850 | MtrunA17_Chr5g0447701 | 48.438 | 64 | 29 | 2 | 265 | 328 | 88 | 147 | 7.37e-12 | 66.2 |
Msa1343850 | MtrunA17_Chr2g0293901 | 42.051 | 195 | 84 | 4 | 1 | 168 | 1 | 193 | 3.15e-11 | 62.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1343850 | AT5G52830.1 | 58.333 | 60 | 24 | 1 | 246 | 305 | 143 | 201 | 7.75e-18 | 84.3 |
Msa1343850 | AT4G01250.1 | 54.237 | 59 | 27 | 0 | 247 | 305 | 106 | 164 | 2.81e-17 | 82.0 |
Msa1343850 | AT4G23550.1 | 58.491 | 53 | 22 | 0 | 253 | 305 | 124 | 176 | 2.24e-16 | 79.7 |
Msa1343850 | AT1G29280.1 | 48.571 | 70 | 27 | 1 | 245 | 305 | 41 | 110 | 3.46e-15 | 75.5 |
Msa1343850 | AT5G45050.1 | 45.882 | 85 | 40 | 2 | 236 | 320 | 1148 | 1226 | 4.71e-15 | 77.8 |
Msa1343850 | AT5G45050.2 | 45.882 | 85 | 40 | 2 | 236 | 320 | 1120 | 1198 | 4.81e-15 | 77.8 |
Msa1343850 | AT5G45050.4 | 45.882 | 85 | 40 | 2 | 236 | 320 | 1009 | 1087 | 5.69e-15 | 77.4 |
Msa1343850 | AT3G58710.1 | 65.116 | 43 | 15 | 0 | 270 | 312 | 72 | 114 | 2.17e-14 | 73.2 |
Msa1343850 | AT3G58710.2 | 65.116 | 43 | 15 | 0 | 270 | 312 | 71 | 113 | 2.27e-14 | 73.2 |
Msa1343850 | AT4G31550.1 | 77.143 | 35 | 8 | 0 | 270 | 304 | 247 | 281 | 2.74e-14 | 73.6 |
Msa1343850 | AT4G31550.2 | 49.206 | 63 | 32 | 0 | 270 | 332 | 246 | 308 | 2.80e-14 | 73.6 |
Msa1343850 | AT2G24570.1 | 77.143 | 35 | 8 | 0 | 270 | 304 | 244 | 278 | 3.47e-14 | 73.2 |
Msa1343850 | AT2G23320.1 | 51.562 | 64 | 23 | 2 | 270 | 330 | 241 | 299 | 3.71e-14 | 73.2 |
Msa1343850 | AT5G28650.1 | 65.116 | 43 | 15 | 0 | 270 | 312 | 263 | 305 | 4.47e-14 | 73.2 |
Msa1343850 | AT3G04670.1 | 74.286 | 35 | 9 | 0 | 270 | 304 | 263 | 297 | 9.28e-14 | 72.0 |
Msa1343850 | AT4G24240.1 | 47.059 | 68 | 33 | 1 | 240 | 304 | 249 | 316 | 1.09e-13 | 72.0 |
Msa1343850 | AT2G30590.1 | 47.541 | 61 | 29 | 1 | 247 | 304 | 288 | 348 | 5.06e-13 | 70.5 |
Msa1343850 | AT2G34830.2 | 69.444 | 36 | 11 | 0 | 270 | 305 | 225 | 260 | 1.33e-12 | 69.3 |
Msa1343850 | AT2G34830.1 | 69.444 | 36 | 11 | 0 | 270 | 305 | 216 | 251 | 1.39e-12 | 69.3 |
Msa1343850 | AT1G30650.1 | 42.647 | 68 | 30 | 1 | 249 | 307 | 188 | 255 | 5.42e-12 | 67.4 |
Msa1343850 | AT2G38470.1 | 45.333 | 75 | 36 | 3 | 253 | 327 | 169 | 238 | 3.72e-11 | 65.1 |
Find 111 sgRNAs with CRISPR-Local
Find 358 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATGAAGTCATTTGGTTTAAA+TGG | 0.099028 | tig0006671:+12971 | None:intergenic |
GGGTGGGGATGGTGGTGGTC+AGG | 0.219889 | tig0006671:+12816 | Msa1343860:CDS |
TTGAGGGAATGCTATGTTAT+TGG | 0.232068 | tig0006671:+13060 | None:intergenic |
GATATTGTAGGTGGTGGAGG+TGG | 0.278924 | tig0006671:+12847 | Msa1343860:CDS |
TGGATGTGGAGACCCTTTAA+TGG | 0.287579 | tig0006671:+12215 | None:intergenic |
GTGGGGATGGTGGTGGTCAG+GGG | 0.289879 | tig0006671:+12818 | Msa1343860:CDS |
ATAAATCCAGTTTCAGAATA+AGG | 0.301581 | tig0006671:+11332 | None:intergenic |
TATGGACAGAAACCCATTAA+AGG | 0.302088 | tig0006671:-12228 | Msa1343850:CDS |
GGTGATGTGGGTGGGGATGG+TGG | 0.303024 | tig0006671:+12808 | Msa1343860:CDS |
TGGGGATGGTGGTGGTCAGG+GGG | 0.305119 | tig0006671:+12819 | Msa1343860:CDS |
GGTGGGGATGGTGGTGGTCA+GGG | 0.307039 | tig0006671:+12817 | Msa1343860:CDS |
TTCACATAACAACAAGATTA+TGG | 0.327717 | tig0006671:-11411 | Msa1343850:CDS |
TGGGATATTGTAGGTGGTGG+AGG | 0.330741 | tig0006671:+12844 | Msa1343860:CDS |
AACTTGCCTTATTCTGAAAC+TGG | 0.331215 | tig0006671:-11338 | Msa1343850:CDS |
ATCAATGCATGCAACAGGTT+TGG | 0.338091 | tig0006671:+12529 | None:intergenic |
CACTAAGCAAATCGAGAAAA+AGG | 0.340079 | tig0006671:-12460 | Msa1343850:intron |
TCGTGGGCATGGAGGAAATA+TGG | 0.346010 | tig0006671:-12246 | Msa1343850:CDS |
GAGTGTTAGGAAATTAAAAT+TGG | 0.348469 | tig0006671:+12601 | None:intergenic |
GGGGATGGTGGTGGTCAGGG+GGG | 0.349141 | tig0006671:+12820 | Msa1343860:CDS |
TCAATGCATGCAACAGGTTT+GGG | 0.360204 | tig0006671:+12530 | None:intergenic |
ATTGTAGGTGGTGGAGGTGG+GGG | 0.360558 | tig0006671:+12850 | Msa1343860:CDS |
GATGTGGGTGGGGATGGTGG+TGG | 0.361535 | tig0006671:+12811 | Msa1343860:CDS |
TATTGTAGGTGGTGGAGGTG+GGG | 0.362235 | tig0006671:+12849 | Msa1343860:CDS |
TCTAAATCTATGAAGTCATT+TGG | 0.362957 | tig0006671:+12962 | None:intergenic |
TTGGTCAGATGATTACTTAA+TGG | 0.368705 | tig0006671:-11261 | Msa1343850:CDS |
ATATTGTAGGTGGTGGAGGT+GGG | 0.369979 | tig0006671:+12848 | Msa1343860:CDS |
GTTGGTGATGTGGGTGGGGA+TGG | 0.376997 | tig0006671:+12805 | Msa1343860:CDS |
GTTGTTGTTCCGCGAGTGTT+AGG | 0.379748 | tig0006671:+12588 | None:intergenic |
GGATGTGGAGACCCTTTAAT+GGG | 0.385486 | tig0006671:+12216 | None:intergenic |
GGATGGGATATTGTAGGTGG+TGG | 0.386256 | tig0006671:+12841 | Msa1343860:CDS |
GTAGTGGCCGTATTAGTAAT+GGG | 0.386403 | tig0006671:+12713 | Msa1343860:CDS |
GTGTTCGCAGTAGAGATGAT+AGG | 0.394801 | tig0006671:+12668 | Msa1343860:CDS |
TGAAGTCATTTGGTTTAAAT+GGG | 0.397097 | tig0006671:+12972 | None:intergenic |
AGTAGCTGGGGTGGAGATAG+TGG | 0.401287 | tig0006671:+12910 | Msa1343860:CDS |
TAATGTTGGTGATGTGGGTG+GGG | 0.404886 | tig0006671:+12801 | Msa1343860:CDS |
ATCCACAAATGTTAGAAACT+TGG | 0.408052 | tig0006671:-11435 | Msa1343850:CDS |
AGGGGTCGGGGTGATTATAT+TGG | 0.410652 | tig0006671:+12688 | Msa1343860:CDS |
GTTTCAATCGGAGGTGGAGG+AGG | 0.417377 | tig0006671:+13100 | None:intergenic |
GTGATATCAATGCATGCAAC+AGG | 0.433021 | tig0006671:+12524 | None:intergenic |
GACCCAGCTTCTTCGACAAC+GGG | 0.441727 | tig0006671:+11458 | None:intergenic |
AAAGATGGTGTGGTACTTTG+AGG | 0.441819 | tig0006671:+13043 | None:intergenic |
AGTGTTAATGTTGGTGATGT+GGG | 0.446897 | tig0006671:+12796 | Msa1343860:CDS |
CAGTAGAGATGATAGGGGTC+GGG | 0.449702 | tig0006671:+12675 | Msa1343860:CDS |
ACCCAAGTTTCTAACATTTG+TGG | 0.449992 | tig0006671:+11433 | None:intergenic |
GTGGTTGTGGTGGTTTCAAT+CGG | 0.455405 | tig0006671:+13088 | None:intergenic |
ATGGACAGAAACCCATTAAA+GGG | 0.461015 | tig0006671:-12227 | Msa1343850:CDS |
TTAATGTTGGTGATGTGGGT+GGG | 0.467691 | tig0006671:+12800 | Msa1343860:CDS |
TATAGCACACCAATGCCGTT+TGG | 0.476487 | tig0006671:+12295 | None:intergenic |
TCCACAAATGTTAGAAACTT+GGG | 0.479230 | tig0006671:-11434 | Msa1343850:CDS |
GTGGTTTCAATCGGAGGTGG+AGG | 0.483897 | tig0006671:+13097 | None:intergenic |
AAGATGGTGTGGTACTTTGA+GGG | 0.484465 | tig0006671:+13044 | None:intergenic |
GTTATTGGCCGTGGTGGTTG+TGG | 0.488418 | tig0006671:+13075 | None:intergenic |
TTACCCGTTGTCGAAGAAGC+TGG | 0.488577 | tig0006671:-11461 | Msa1343850:CDS |
GTTAGGAAATTAAAATTGGT+GGG | 0.494516 | tig0006671:+12605 | None:intergenic |
TGGGGTGGAGATAGTGGGGA+TGG | 0.497054 | tig0006671:+12916 | Msa1343860:CDS |
AGCAATGCTCAAGTTGTTGT+CGG | 0.499521 | tig0006671:-11368 | Msa1343850:CDS |
TTAAATGGGATAAAAGAGAA+TGG | 0.500195 | tig0006671:+12986 | None:intergenic |
AGTGGTGGGAGTAGTGATGG+TGG | 0.500420 | tig0006671:+12751 | Msa1343860:CDS |
TAAATGGGATAAAAGAGAAT+GGG | 0.501373 | tig0006671:+12987 | None:intergenic |
GTAGCTGGGGTGGAGATAGT+GGG | 0.503727 | tig0006671:+12911 | Msa1343860:CDS |
GTTAATGTTGGTGATGTGGG+TGG | 0.504390 | tig0006671:+12799 | Msa1343860:CDS |
TGTAGTGGCCGTATTAGTAA+TGG | 0.506802 | tig0006671:+12712 | Msa1343860:CDS |
TGTTCGCAGTAGAGATGATA+GGG | 0.507057 | tig0006671:+12669 | Msa1343860:CDS |
ATGGACTTCAACCGCCTCAA+TGG | 0.514519 | tig0006671:-11242 | Msa1343850:CDS |
GTGGTGGTTTCAATCGGAGG+TGG | 0.519986 | tig0006671:+13094 | None:intergenic |
GAGTAGTGATGGTGGGAGTG+TGG | 0.520200 | tig0006671:+12759 | Msa1343860:CDS |
GTGAAATCATCAAAGAAAGA+TGG | 0.521869 | tig0006671:+13028 | None:intergenic |
GTAATAGTATGGAGAGTGGT+GGG | 0.523121 | tig0006671:+12737 | Msa1343860:CDS |
ACATAATAACCAAACGGCAT+TGG | 0.525701 | tig0006671:-12304 | Msa1343850:CDS |
GAGAGTGGTGGGAGTAGTGA+TGG | 0.528944 | tig0006671:+12748 | Msa1343860:CDS |
TGTTAGGAAATTAAAATTGG+TGG | 0.530065 | tig0006671:+12604 | None:intergenic |
TGATAACAAACATAACAGCT+TGG | 0.533538 | tig0006671:-11280 | Msa1343850:CDS |
GTGGTGGGAGTAGTGATGGT+GGG | 0.534801 | tig0006671:+12752 | Msa1343860:CDS |
GGTGATTATATTGGTTGTAG+TGG | 0.536550 | tig0006671:+12697 | Msa1343860:CDS |
TAGTGTTAATGTTGGTGATG+TGG | 0.540874 | tig0006671:+12795 | Msa1343860:CDS |
TGCTATGTTATTGGCCGTGG+TGG | 0.541995 | tig0006671:+13069 | None:intergenic |
GCAGTAGAGATGATAGGGGT+CGG | 0.543866 | tig0006671:+12674 | Msa1343860:CDS |
CAGAAAACATAATAACCAAA+CGG | 0.550138 | tig0006671:-12310 | Msa1343850:CDS |
AGATTGTCCAGCAAGAAGAA+AGG | 0.551728 | tig0006671:-11715 | Msa1343850:intron |
TACCCGTTGTCGAAGAAGCT+GGG | 0.554513 | tig0006671:-11460 | Msa1343850:CDS |
AGTAGAGATGATAGGGGTCG+GGG | 0.555014 | tig0006671:+12676 | Msa1343860:CDS |
GAATGCTATGTTATTGGCCG+TGG | 0.557522 | tig0006671:+13066 | None:intergenic |
GTTGTGGTGGTTTCAATCGG+AGG | 0.560812 | tig0006671:+13091 | None:intergenic |
TGACCCAGCTTCTTCGACAA+CGG | 0.566165 | tig0006671:+11457 | None:intergenic |
TGGCATACTAGTAGCTGGGG+TGG | 0.566316 | tig0006671:+12901 | Msa1343860:CDS |
TTTCAAAAGACTCGTGGGCA+TGG | 0.568404 | tig0006671:-12257 | Msa1343850:CDS |
TTAGGAAATTAAAATTGGTG+GGG | 0.575907 | tig0006671:+12606 | None:intergenic |
TTATTACAAATGTAGCACTT+TGG | 0.580718 | tig0006671:-11739 | Msa1343850:CDS |
TTTCAATCGGAGGTGGAGGA+GGG | 0.591027 | tig0006671:+13101 | None:intergenic |
GACTTCAACCGCCTCAATGG+TGG | 0.595091 | tig0006671:-11239 | Msa1343850:CDS |
GGGGTGGAGATAGTGGGGAT+GGG | 0.599391 | tig0006671:+12917 | Msa1343860:CDS |
AGAATAGAGCACCACCATTG+AGG | 0.605565 | tig0006671:+11228 | None:intergenic |
ATTGGCCGTGGTGGTTGTGG+TGG | 0.609891 | tig0006671:+13078 | None:intergenic |
GATTTGCTTAGTGCAACTGA+TGG | 0.610064 | tig0006671:+12470 | None:intergenic |
ATGAACACTAGTGTTTGTCA+TGG | 0.612356 | tig0006671:+12643 | Msa1343860:CDS |
ATGTGTGTGAACCTTGGATG+TGG | 0.613865 | tig0006671:+12201 | None:intergenic |
TAGCTGGGGTGGAGATAGTG+GGG | 0.614917 | tig0006671:+12912 | Msa1343860:CDS |
ATCATCAAAGAAAGATGGTG+TGG | 0.615055 | tig0006671:+13033 | None:intergenic |
TTAAAGGGTCTCCACATCCA+AGG | 0.615060 | tig0006671:-12212 | Msa1343850:intron |
GGTAATAGTATGGAGAGTGG+TGG | 0.626131 | tig0006671:+12736 | Msa1343860:CDS |
TGAGCTTTCAAAAGACTCGT+GGG | 0.628685 | tig0006671:-12262 | Msa1343850:CDS |
TAGTGGCCGTATTAGTAATG+GGG | 0.630367 | tig0006671:+12714 | Msa1343860:CDS |
ATGAGCTTTCAAAAGACTCG+TGG | 0.638619 | tig0006671:-12263 | Msa1343850:CDS |
GGTGGTAGGAGTGGTAAATG+TGG | 0.664560 | tig0006671:+13135 | None:intergenic |
ATGTACATTAGTGTTAATGT+TGG | 0.667666 | tig0006671:+12787 | Msa1343860:CDS |
CAAAAGACTCGTGGGCATGG+AGG | 0.669284 | tig0006671:-12254 | Msa1343850:CDS |
ATAGAGCACCACCATTGAGG+CGG | 0.679111 | tig0006671:+11231 | None:intergenic |
TGAAACCACCACAACCACCA+CGG | 0.682811 | tig0006671:-13083 | Msa1343850:CDS |
AGTGGCCGTATTAGTAATGG+GGG | 0.703018 | tig0006671:+12715 | Msa1343860:CDS |
ACTTGAGCATTGCTACTCTG+TGG | 0.710623 | tig0006671:+11377 | None:intergenic |
GTTCGCAGTAGAGATGATAG+GGG | 0.735858 | tig0006671:+12670 | Msa1343860:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATTAAAATATATAAAATAAT+AGG | + | tig0006671:11989-12008 | None:intergenic | 0.0% |
!! | ATTAAAATATATAAAATAAT+AGG | + | tig0006671:11989-12008 | None:intergenic | 0.0% |
!! | TTAAAAAAGTTATTTATTAG+GGG | + | tig0006671:12553-12572 | None:intergenic | 10.0% |
!! | GATTAAAAAAGTTATTTATT+AGG | + | tig0006671:12555-12574 | None:intergenic | 10.0% |
!! | TTTAATAAAAATGTTGTTAT+TGG | - | tig0006671:12792-12811 | Msa1343850:CDS | 10.0% |
!! | TTAAAAAAGTTATTTATTAG+GGG | + | tig0006671:12553-12572 | None:intergenic | 10.0% |
!! | GATTAAAAAAGTTATTTATT+AGG | + | tig0006671:12555-12574 | None:intergenic | 10.0% |
!! | TTTAATAAAAATGTTGTTAT+TGG | - | tig0006671:12792-12811 | Msa1343850:CDS | 10.0% |
!! | TTCTAATTAAATTCAACATA+TGG | - | tig0006671:12369-12388 | Msa1343850:intron | 15.0% |
!!! | ACAACATTTTTATTAAATGT+TGG | + | tig0006671:12789-12808 | Msa1343860:CDS | 15.0% |
!! | TTCTAATTAAATTCAACATA+TGG | - | tig0006671:12369-12388 | Msa1343850:intron | 15.0% |
!!! | ACAACATTTTTATTAAATGT+TGG | + | tig0006671:12789-12808 | Msa1343860:CDS | 15.0% |
!! | TAGAATTATATGCAATGAAT+AGG | + | tig0006671:12354-12373 | None:intergenic | 20.0% |
!! | ACTTATATTGTGATATATGA+AGG | - | tig0006671:12744-12763 | Msa1343850:CDS | 20.0% |
!! | TAGAATTATATGCAATGAAT+AGG | + | tig0006671:12354-12373 | None:intergenic | 20.0% |
!! | ACTTATATTGTGATATATGA+AGG | - | tig0006671:12744-12763 | Msa1343850:CDS | 20.0% |
! | TAAATGGGATAAAAGAGAAT+GGG | + | tig0006671:11426-11445 | None:intergenic | 25.0% |
! | TTAAATGGGATAAAAGAGAA+TGG | + | tig0006671:11427-11446 | None:intergenic | 25.0% |
!! | TGAAGTCATTTGGTTTAAAT+GGG | + | tig0006671:11441-11460 | None:intergenic | 25.0% |
!! | ATGAAGTCATTTGGTTTAAA+TGG | + | tig0006671:11442-11461 | None:intergenic | 25.0% |
! | TCTAAATCTATGAAGTCATT+TGG | + | tig0006671:11451-11470 | None:intergenic | 25.0% |
! | ATGTACATTAGTGTTAATGT+TGG | + | tig0006671:11626-11645 | None:intergenic | 25.0% |
! | TTAGGAAATTAAAATTGGTG+GGG | + | tig0006671:11807-11826 | None:intergenic | 25.0% |
! | GTTAGGAAATTAAAATTGGT+GGG | + | tig0006671:11808-11827 | None:intergenic | 25.0% |
! | TGTTAGGAAATTAAAATTGG+TGG | + | tig0006671:11809-11828 | None:intergenic | 25.0% |
! | GAGTGTTAGGAAATTAAAAT+TGG | + | tig0006671:11812-11831 | None:intergenic | 25.0% |
! | TATTCTTACGTAACTTAACT+CGG | - | tig0006671:12044-12063 | Msa1343850:intron | 25.0% |
!! | TGTTTTCTGTAAGAAAAGAA+AGG | + | tig0006671:12089-12108 | None:intergenic | 25.0% |
! | CAGAAAACATAATAACCAAA+CGG | - | tig0006671:12100-12119 | Msa1343850:intron | 25.0% |
!! | AATCAATGTTTAAAACTCGA+GGG | + | tig0006671:12317-12336 | None:intergenic | 25.0% |
!!! | GAGTTTTAAACATTGATTGT+AGG | - | tig0006671:12319-12338 | Msa1343850:intron | 25.0% |
! | AACATATGGTATCTTAATCA+CGG | - | tig0006671:12383-12402 | Msa1343850:intron | 25.0% |
! | TAGAGGAAGTAAAAACATAT+TGG | + | tig0006671:12507-12526 | None:intergenic | 25.0% |
!! | AAATTTGTTTATGCTGAAAC+TGG | - | tig0006671:12602-12621 | Msa1343850:CDS | 25.0% |
! | TCTTTAATAAATGATGTTGC+AGG | - | tig0006671:12646-12665 | Msa1343850:CDS | 25.0% |
! | TTATTACAAATGTAGCACTT+TGG | - | tig0006671:12671-12690 | Msa1343850:CDS | 25.0% |
! | TTCACATAACAACAAGATTA+TGG | - | tig0006671:12999-13018 | Msa1343850:CDS | 25.0% |
! | ATAAATCCAGTTTCAGAATA+AGG | + | tig0006671:13081-13100 | None:intergenic | 25.0% |
! | TAAATGGGATAAAAGAGAAT+GGG | + | tig0006671:11426-11445 | None:intergenic | 25.0% |
! | TTAAATGGGATAAAAGAGAA+TGG | + | tig0006671:11427-11446 | None:intergenic | 25.0% |
!! | TGAAGTCATTTGGTTTAAAT+GGG | + | tig0006671:11441-11460 | None:intergenic | 25.0% |
!! | ATGAAGTCATTTGGTTTAAA+TGG | + | tig0006671:11442-11461 | None:intergenic | 25.0% |
! | TCTAAATCTATGAAGTCATT+TGG | + | tig0006671:11451-11470 | None:intergenic | 25.0% |
! | ATGTACATTAGTGTTAATGT+TGG | + | tig0006671:11626-11645 | None:intergenic | 25.0% |
! | TTAGGAAATTAAAATTGGTG+GGG | + | tig0006671:11807-11826 | None:intergenic | 25.0% |
! | GTTAGGAAATTAAAATTGGT+GGG | + | tig0006671:11808-11827 | None:intergenic | 25.0% |
! | TGTTAGGAAATTAAAATTGG+TGG | + | tig0006671:11809-11828 | None:intergenic | 25.0% |
! | GAGTGTTAGGAAATTAAAAT+TGG | + | tig0006671:11812-11831 | None:intergenic | 25.0% |
! | TATTCTTACGTAACTTAACT+CGG | - | tig0006671:12044-12063 | Msa1343850:intron | 25.0% |
!! | TGTTTTCTGTAAGAAAAGAA+AGG | + | tig0006671:12089-12108 | None:intergenic | 25.0% |
! | CAGAAAACATAATAACCAAA+CGG | - | tig0006671:12100-12119 | Msa1343850:intron | 25.0% |
!! | AATCAATGTTTAAAACTCGA+GGG | + | tig0006671:12317-12336 | None:intergenic | 25.0% |
!!! | GAGTTTTAAACATTGATTGT+AGG | - | tig0006671:12319-12338 | Msa1343850:intron | 25.0% |
! | AACATATGGTATCTTAATCA+CGG | - | tig0006671:12383-12402 | Msa1343850:intron | 25.0% |
! | TAGAGGAAGTAAAAACATAT+TGG | + | tig0006671:12507-12526 | None:intergenic | 25.0% |
!! | AAATTTGTTTATGCTGAAAC+TGG | - | tig0006671:12602-12621 | Msa1343850:CDS | 25.0% |
! | TCTTTAATAAATGATGTTGC+AGG | - | tig0006671:12646-12665 | Msa1343850:CDS | 25.0% |
! | TTATTACAAATGTAGCACTT+TGG | - | tig0006671:12671-12690 | Msa1343850:CDS | 25.0% |
! | TTCACATAACAACAAGATTA+TGG | - | tig0006671:12999-13018 | Msa1343850:CDS | 25.0% |
! | ATAAATCCAGTTTCAGAATA+AGG | + | tig0006671:13081-13100 | None:intergenic | 25.0% |
GTGAAATCATCAAAGAAAGA+TGG | + | tig0006671:11385-11404 | None:intergenic | 30.0% | |
TATTACCCCCATTACTAATA+CGG | - | tig0006671:11690-11709 | Msa1343850:intron | 30.0% | |
!!! | TTTTAATTTCCTAACACTCG+CGG | - | tig0006671:11813-11832 | Msa1343850:intron | 30.0% |
GTATGCATGATAAAAATGAG+CGG | + | tig0006671:11914-11933 | None:intergenic | 30.0% | |
! | CAATCAATGTTTAAAACTCG+AGG | + | tig0006671:12318-12337 | None:intergenic | 30.0% |
! | TAAACATTGATTGTAGGCAT+TGG | - | tig0006671:12325-12344 | Msa1343850:intron | 30.0% |
! | AAACATTGATTGTAGGCATT+GGG | - | tig0006671:12326-12345 | Msa1343850:intron | 30.0% |
GAAAAATATGGTACACTTAG+AGG | + | tig0006671:12524-12543 | None:intergenic | 30.0% | |
TAGGGGCTTAAAGAAAAATA+TGG | + | tig0006671:12536-12555 | None:intergenic | 30.0% | |
! | TCAGCATAAACAAATTTTGC+AGG | + | tig0006671:12599-12618 | None:intergenic | 30.0% |
! | AAATTTAGGTTTGCCTAATG+TGG | - | tig0006671:12828-12847 | Msa1343850:CDS | 30.0% |
CTCTATAATAGTTCCATTTC+CGG | + | tig0006671:12925-12944 | Msa1343860:CDS | 30.0% | |
ATCCACAAATGTTAGAAACT+TGG | - | tig0006671:12975-12994 | Msa1343850:CDS | 30.0% | |
TCCACAAATGTTAGAAACTT+GGG | - | tig0006671:12976-12995 | Msa1343850:CDS | 30.0% | |
TGATAACAAACATAACAGCT+TGG | - | tig0006671:13130-13149 | Msa1343850:CDS | 30.0% | |
TTGGTCAGATGATTACTTAA+TGG | - | tig0006671:13149-13168 | Msa1343850:CDS | 30.0% | |
GTGAAATCATCAAAGAAAGA+TGG | + | tig0006671:11385-11404 | None:intergenic | 30.0% | |
TATTACCCCCATTACTAATA+CGG | - | tig0006671:11690-11709 | Msa1343850:intron | 30.0% | |
!!! | TTTTAATTTCCTAACACTCG+CGG | - | tig0006671:11813-11832 | Msa1343850:intron | 30.0% |
GTATGCATGATAAAAATGAG+CGG | + | tig0006671:11914-11933 | None:intergenic | 30.0% | |
! | CAATCAATGTTTAAAACTCG+AGG | + | tig0006671:12318-12337 | None:intergenic | 30.0% |
! | TAAACATTGATTGTAGGCAT+TGG | - | tig0006671:12325-12344 | Msa1343850:intron | 30.0% |
! | AAACATTGATTGTAGGCATT+GGG | - | tig0006671:12326-12345 | Msa1343850:intron | 30.0% |
GAAAAATATGGTACACTTAG+AGG | + | tig0006671:12524-12543 | None:intergenic | 30.0% | |
TAGGGGCTTAAAGAAAAATA+TGG | + | tig0006671:12536-12555 | None:intergenic | 30.0% | |
! | TCAGCATAAACAAATTTTGC+AGG | + | tig0006671:12599-12618 | None:intergenic | 30.0% |
! | AAATTTAGGTTTGCCTAATG+TGG | - | tig0006671:12828-12847 | Msa1343850:CDS | 30.0% |
CTCTATAATAGTTCCATTTC+CGG | + | tig0006671:12925-12944 | Msa1343860:CDS | 30.0% | |
ATCCACAAATGTTAGAAACT+TGG | - | tig0006671:12975-12994 | Msa1343850:CDS | 30.0% | |
TCCACAAATGTTAGAAACTT+GGG | - | tig0006671:12976-12995 | Msa1343850:CDS | 30.0% | |
TGATAACAAACATAACAGCT+TGG | - | tig0006671:13130-13149 | Msa1343850:CDS | 30.0% | |
TTGGTCAGATGATTACTTAA+TGG | - | tig0006671:13149-13168 | Msa1343850:CDS | 30.0% | |
TTGAGGGAATGCTATGTTAT+TGG | + | tig0006671:11353-11372 | None:intergenic | 35.0% | |
ATCATCAAAGAAAGATGGTG+TGG | + | tig0006671:11380-11399 | None:intergenic | 35.0% | |
!! | TTTTTGGCATACTAGTAGCT+GGG | + | tig0006671:11516-11535 | None:intergenic | 35.0% |
!!! | ATTTTTGGCATACTAGTAGC+TGG | + | tig0006671:11517-11536 | None:intergenic | 35.0% |
!! | AGTGTTAATGTTGGTGATGT+GGG | + | tig0006671:11617-11636 | None:intergenic | 35.0% |
!! | TAGTGTTAATGTTGGTGATG+TGG | + | tig0006671:11618-11637 | None:intergenic | 35.0% |
! | TAGTAATGGGGGTAATAGTA+TGG | + | tig0006671:11687-11706 | None:intergenic | 35.0% |
! | GGTGATTATATTGGTTGTAG+TGG | + | tig0006671:11716-11735 | None:intergenic | 35.0% |
ATGAACACTAGTGTTTGTCA+TGG | + | tig0006671:11770-11789 | None:intergenic | 35.0% | |
CACTAAGCAAATCGAGAAAA+AGG | - | tig0006671:11950-11969 | Msa1343850:intron | 35.0% | |
ACATAATAACCAAACGGCAT+TGG | - | tig0006671:12106-12125 | Msa1343850:intron | 35.0% | |
TATGGACAGAAACCCATTAA+AGG | - | tig0006671:12182-12201 | Msa1343850:intron | 35.0% | |
ATGGACAGAAACCCATTAAA+GGG | - | tig0006671:12183-12202 | Msa1343850:intron | 35.0% | |
! | TTTTGAATGTGTGTGAACCT+TGG | + | tig0006671:12218-12237 | None:intergenic | 35.0% |
TTTAAATGTGCAGCTCATTG+TGG | + | tig0006671:12459-12478 | None:intergenic | 35.0% | |
! | TTTTCTACCTTTCTTCTTGC+TGG | + | tig0006671:12705-12724 | Msa1343860:CDS | 35.0% |
! | AAACCTAAATTTGTGATGGG+GGG | + | tig0006671:12820-12839 | Msa1343860:CDS | 35.0% |
CAAACCTAAATTTGTGATGG+GGG | + | tig0006671:12821-12840 | Msa1343860:CDS | 35.0% | |
GCAAACCTAAATTTGTGATG+GGG | + | tig0006671:12822-12841 | Msa1343860:CDS | 35.0% | |
GGCAAACCTAAATTTGTGAT+GGG | + | tig0006671:12823-12842 | Msa1343860:CDS | 35.0% | |
AGGCAAACCTAAATTTGTGA+TGG | + | tig0006671:12824-12843 | Msa1343860:CDS | 35.0% | |
AACTACAACATCACCACATT+AGG | + | tig0006671:12844-12863 | Msa1343860:CDS | 35.0% | |
GATGTTGTAGTTTGATCATC+CGG | - | tig0006671:12852-12871 | Msa1343850:CDS | 35.0% | |
TGATTGATCAACGAGAACAT+GGG | + | tig0006671:12890-12909 | Msa1343860:CDS | 35.0% | |
TTGATTGATCAACGAGAACA+TGG | + | tig0006671:12891-12910 | Msa1343860:CDS | 35.0% | |
TCAATCAAACATCCCTTATC+CGG | - | tig0006671:12903-12922 | Msa1343850:CDS | 35.0% | |
ATAGTTCCATTTCCGGATAA+GGG | + | tig0006671:12918-12937 | Msa1343860:CDS | 35.0% | |
AATAGTTCCATTTCCGGATA+AGG | + | tig0006671:12919-12938 | Msa1343860:CDS | 35.0% | |
ACCCAAGTTTCTAACATTTG+TGG | + | tig0006671:12980-12999 | None:intergenic | 35.0% | |
!! | AACTTGCCTTATTCTGAAAC+TGG | - | tig0006671:13072-13091 | Msa1343850:CDS | 35.0% |
TTGAGGGAATGCTATGTTAT+TGG | + | tig0006671:11353-11372 | None:intergenic | 35.0% | |
ATCATCAAAGAAAGATGGTG+TGG | + | tig0006671:11380-11399 | None:intergenic | 35.0% | |
!! | TTTTTGGCATACTAGTAGCT+GGG | + | tig0006671:11516-11535 | None:intergenic | 35.0% |
!!! | ATTTTTGGCATACTAGTAGC+TGG | + | tig0006671:11517-11536 | None:intergenic | 35.0% |
!! | AGTGTTAATGTTGGTGATGT+GGG | + | tig0006671:11617-11636 | None:intergenic | 35.0% |
!! | TAGTGTTAATGTTGGTGATG+TGG | + | tig0006671:11618-11637 | None:intergenic | 35.0% |
! | TAGTAATGGGGGTAATAGTA+TGG | + | tig0006671:11687-11706 | None:intergenic | 35.0% |
! | GGTGATTATATTGGTTGTAG+TGG | + | tig0006671:11716-11735 | None:intergenic | 35.0% |
ATGAACACTAGTGTTTGTCA+TGG | + | tig0006671:11770-11789 | None:intergenic | 35.0% | |
CACTAAGCAAATCGAGAAAA+AGG | - | tig0006671:11950-11969 | Msa1343850:intron | 35.0% | |
ACATAATAACCAAACGGCAT+TGG | - | tig0006671:12106-12125 | Msa1343850:intron | 35.0% | |
TATGGACAGAAACCCATTAA+AGG | - | tig0006671:12182-12201 | Msa1343850:intron | 35.0% | |
ATGGACAGAAACCCATTAAA+GGG | - | tig0006671:12183-12202 | Msa1343850:intron | 35.0% | |
! | TTTTGAATGTGTGTGAACCT+TGG | + | tig0006671:12218-12237 | None:intergenic | 35.0% |
TTTAAATGTGCAGCTCATTG+TGG | + | tig0006671:12459-12478 | None:intergenic | 35.0% | |
! | TTTTCTACCTTTCTTCTTGC+TGG | + | tig0006671:12705-12724 | Msa1343860:CDS | 35.0% |
! | AAACCTAAATTTGTGATGGG+GGG | + | tig0006671:12820-12839 | Msa1343860:CDS | 35.0% |
CAAACCTAAATTTGTGATGG+GGG | + | tig0006671:12821-12840 | Msa1343860:CDS | 35.0% | |
GCAAACCTAAATTTGTGATG+GGG | + | tig0006671:12822-12841 | Msa1343860:CDS | 35.0% | |
GGCAAACCTAAATTTGTGAT+GGG | + | tig0006671:12823-12842 | Msa1343860:CDS | 35.0% | |
AGGCAAACCTAAATTTGTGA+TGG | + | tig0006671:12824-12843 | Msa1343860:CDS | 35.0% | |
AACTACAACATCACCACATT+AGG | + | tig0006671:12844-12863 | Msa1343860:CDS | 35.0% | |
GATGTTGTAGTTTGATCATC+CGG | - | tig0006671:12852-12871 | Msa1343850:CDS | 35.0% | |
TGATTGATCAACGAGAACAT+GGG | + | tig0006671:12890-12909 | Msa1343860:CDS | 35.0% | |
TTGATTGATCAACGAGAACA+TGG | + | tig0006671:12891-12910 | Msa1343860:CDS | 35.0% | |
TCAATCAAACATCCCTTATC+CGG | - | tig0006671:12903-12922 | Msa1343850:CDS | 35.0% | |
ATAGTTCCATTTCCGGATAA+GGG | + | tig0006671:12918-12937 | Msa1343860:CDS | 35.0% | |
AATAGTTCCATTTCCGGATA+AGG | + | tig0006671:12919-12938 | Msa1343860:CDS | 35.0% | |
ACCCAAGTTTCTAACATTTG+TGG | + | tig0006671:12980-12999 | None:intergenic | 35.0% | |
!! | AACTTGCCTTATTCTGAAAC+TGG | - | tig0006671:13072-13091 | Msa1343850:CDS | 35.0% |
TTCAAAAATGGTGGTAGGAG+TGG | + | tig0006671:11287-11306 | None:intergenic | 40.0% | |
AAGATGGTGTGGTACTTTGA+GGG | + | tig0006671:11369-11388 | None:intergenic | 40.0% | |
AAAGATGGTGTGGTACTTTG+AGG | + | tig0006671:11370-11389 | None:intergenic | 40.0% | |
!! | AAGAGAATGGGCTCTTTTCA+TGG | + | tig0006671:11414-11433 | None:intergenic | 40.0% |
! | TTTTGGCATACTAGTAGCTG+GGG | + | tig0006671:11515-11534 | None:intergenic | 40.0% |
!!! | GTGGTGATGGCATTGATTTT+TGG | + | tig0006671:11532-11551 | None:intergenic | 40.0% |
!! | TTAATGTTGGTGATGTGGGT+GGG | + | tig0006671:11613-11632 | None:intergenic | 40.0% |
GTAATAGTATGGAGAGTGGT+GGG | + | tig0006671:11676-11695 | None:intergenic | 40.0% | |
TAGTGGCCGTATTAGTAATG+GGG | + | tig0006671:11699-11718 | None:intergenic | 40.0% | |
GTAGTGGCCGTATTAGTAAT+GGG | + | tig0006671:11700-11719 | None:intergenic | 40.0% | |
TGTAGTGGCCGTATTAGTAA+TGG | + | tig0006671:11701-11720 | None:intergenic | 40.0% | |
TGTTCGCAGTAGAGATGATA+GGG | + | tig0006671:11744-11763 | None:intergenic | 40.0% | |
TCAATGCATGCAACAGGTTT+GGG | + | tig0006671:11883-11902 | None:intergenic | 40.0% | |
ATCAATGCATGCAACAGGTT+TGG | + | tig0006671:11884-11903 | None:intergenic | 40.0% | |
GTGATATCAATGCATGCAAC+AGG | + | tig0006671:11889-11908 | None:intergenic | 40.0% | |
! | GATTTGCTTAGTGCAACTGA+TGG | + | tig0006671:11943-11962 | None:intergenic | 40.0% |
ATGAGCTTTCAAAAGACTCG+TGG | - | tig0006671:12147-12166 | Msa1343850:intron | 40.0% | |
TGAGCTTTCAAAAGACTCGT+GGG | - | tig0006671:12148-12167 | Msa1343850:intron | 40.0% | |
! | ATGTTTAAAACTCGAGGGTG+CGG | + | tig0006671:12312-12331 | None:intergenic | 40.0% |
GCTCATTGTGGATAATTGAG+TGG | + | tig0006671:12447-12466 | None:intergenic | 40.0% | |
AGATTGTCCAGCAAGAAGAA+AGG | - | tig0006671:12695-12714 | Msa1343850:CDS | 40.0% | |
AAACATCCCTTATCCGGAAA+TGG | - | tig0006671:12909-12928 | Msa1343850:CDS | 40.0% | |
! | AGCAATGCTCAAGTTGTTGT+CGG | - | tig0006671:13042-13061 | Msa1343850:CDS | 40.0% |
TTCAAAAATGGTGGTAGGAG+TGG | + | tig0006671:11287-11306 | None:intergenic | 40.0% | |
AAGATGGTGTGGTACTTTGA+GGG | + | tig0006671:11369-11388 | None:intergenic | 40.0% | |
AAAGATGGTGTGGTACTTTG+AGG | + | tig0006671:11370-11389 | None:intergenic | 40.0% | |
!! | AAGAGAATGGGCTCTTTTCA+TGG | + | tig0006671:11414-11433 | None:intergenic | 40.0% |
! | TTTTGGCATACTAGTAGCTG+GGG | + | tig0006671:11515-11534 | None:intergenic | 40.0% |
!!! | GTGGTGATGGCATTGATTTT+TGG | + | tig0006671:11532-11551 | None:intergenic | 40.0% |
!! | TTAATGTTGGTGATGTGGGT+GGG | + | tig0006671:11613-11632 | None:intergenic | 40.0% |
GTAATAGTATGGAGAGTGGT+GGG | + | tig0006671:11676-11695 | None:intergenic | 40.0% | |
TAGTGGCCGTATTAGTAATG+GGG | + | tig0006671:11699-11718 | None:intergenic | 40.0% | |
GTAGTGGCCGTATTAGTAAT+GGG | + | tig0006671:11700-11719 | None:intergenic | 40.0% | |
TGTAGTGGCCGTATTAGTAA+TGG | + | tig0006671:11701-11720 | None:intergenic | 40.0% | |
TGTTCGCAGTAGAGATGATA+GGG | + | tig0006671:11744-11763 | None:intergenic | 40.0% | |
TCAATGCATGCAACAGGTTT+GGG | + | tig0006671:11883-11902 | None:intergenic | 40.0% | |
ATCAATGCATGCAACAGGTT+TGG | + | tig0006671:11884-11903 | None:intergenic | 40.0% | |
GTGATATCAATGCATGCAAC+AGG | + | tig0006671:11889-11908 | None:intergenic | 40.0% | |
! | GATTTGCTTAGTGCAACTGA+TGG | + | tig0006671:11943-11962 | None:intergenic | 40.0% |
ATGAGCTTTCAAAAGACTCG+TGG | - | tig0006671:12147-12166 | Msa1343850:intron | 40.0% | |
TGAGCTTTCAAAAGACTCGT+GGG | - | tig0006671:12148-12167 | Msa1343850:intron | 40.0% | |
! | ATGTTTAAAACTCGAGGGTG+CGG | + | tig0006671:12312-12331 | None:intergenic | 40.0% |
GCTCATTGTGGATAATTGAG+TGG | + | tig0006671:12447-12466 | None:intergenic | 40.0% | |
AGATTGTCCAGCAAGAAGAA+AGG | - | tig0006671:12695-12714 | Msa1343850:CDS | 40.0% | |
AAACATCCCTTATCCGGAAA+TGG | - | tig0006671:12909-12928 | Msa1343850:CDS | 40.0% | |
! | AGCAATGCTCAAGTTGTTGT+CGG | - | tig0006671:13042-13061 | Msa1343850:CDS | 40.0% |
GGGTCTTCAAAAATGGTGGT+AGG | + | tig0006671:11292-11311 | None:intergenic | 45.0% | |
AGGAGGGTCTTCAAAAATGG+TGG | + | tig0006671:11296-11315 | None:intergenic | 45.0% | |
TGGAGGAGGGTCTTCAAAAA+TGG | + | tig0006671:11299-11318 | None:intergenic | 45.0% | |
GTGGTTGTGGTGGTTTCAAT+CGG | + | tig0006671:11325-11344 | None:intergenic | 45.0% | |
GAATGCTATGTTATTGGCCG+TGG | + | tig0006671:11347-11366 | None:intergenic | 45.0% | |
!! | ATATTGTAGGTGGTGGAGGT+GGG | + | tig0006671:11565-11584 | None:intergenic | 45.0% |
!! | TAATGTTGGTGATGTGGGTG+GGG | + | tig0006671:11612-11631 | None:intergenic | 45.0% |
!! | GTTAATGTTGGTGATGTGGG+TGG | + | tig0006671:11614-11633 | None:intergenic | 45.0% |
GGTAATAGTATGGAGAGTGG+TGG | + | tig0006671:11677-11696 | None:intergenic | 45.0% | |
AGTGGCCGTATTAGTAATGG+GGG | + | tig0006671:11698-11717 | None:intergenic | 45.0% | |
GTTCGCAGTAGAGATGATAG+GGG | + | tig0006671:11743-11762 | None:intergenic | 45.0% | |
GTGTTCGCAGTAGAGATGAT+AGG | + | tig0006671:11745-11764 | None:intergenic | 45.0% | |
TATAGCACACCAATGCCGTT+TGG | + | tig0006671:12118-12137 | None:intergenic | 45.0% | |
TTTCAAAAGACTCGTGGGCA+TGG | - | tig0006671:12153-12172 | Msa1343850:intron | 45.0% | |
GGATGTGGAGACCCTTTAAT+GGG | + | tig0006671:12197-12216 | None:intergenic | 45.0% | |
TGGATGTGGAGACCCTTTAA+TGG | + | tig0006671:12198-12217 | None:intergenic | 45.0% | |
TTAAAGGGTCTCCACATCCA+AGG | - | tig0006671:12198-12217 | Msa1343850:intron | 45.0% | |
ATGTGTGTGAACCTTGGATG+TGG | + | tig0006671:12212-12231 | None:intergenic | 45.0% | |
!! | AGGGTGCGGTTGTTTGTTTT+AGG | + | tig0006671:12298-12317 | None:intergenic | 45.0% |
GTACCCCCCATCACAAATTT+AGG | - | tig0006671:12814-12833 | Msa1343850:CDS | 45.0% | |
! | ACTTGAGCATTGCTACTCTG+TGG | + | tig0006671:13036-13055 | None:intergenic | 45.0% |
! | AGAATAGAGCACCACCATTG+AGG | + | tig0006671:13185-13204 | None:intergenic | 45.0% |
GGGTCTTCAAAAATGGTGGT+AGG | + | tig0006671:11292-11311 | None:intergenic | 45.0% | |
AGGAGGGTCTTCAAAAATGG+TGG | + | tig0006671:11296-11315 | None:intergenic | 45.0% | |
TGGAGGAGGGTCTTCAAAAA+TGG | + | tig0006671:11299-11318 | None:intergenic | 45.0% | |
GTGGTTGTGGTGGTTTCAAT+CGG | + | tig0006671:11325-11344 | None:intergenic | 45.0% | |
GAATGCTATGTTATTGGCCG+TGG | + | tig0006671:11347-11366 | None:intergenic | 45.0% | |
!! | ATATTGTAGGTGGTGGAGGT+GGG | + | tig0006671:11565-11584 | None:intergenic | 45.0% |
!! | TAATGTTGGTGATGTGGGTG+GGG | + | tig0006671:11612-11631 | None:intergenic | 45.0% |
!! | GTTAATGTTGGTGATGTGGG+TGG | + | tig0006671:11614-11633 | None:intergenic | 45.0% |
GGTAATAGTATGGAGAGTGG+TGG | + | tig0006671:11677-11696 | None:intergenic | 45.0% | |
AGTGGCCGTATTAGTAATGG+GGG | + | tig0006671:11698-11717 | None:intergenic | 45.0% | |
GTTCGCAGTAGAGATGATAG+GGG | + | tig0006671:11743-11762 | None:intergenic | 45.0% | |
GTGTTCGCAGTAGAGATGAT+AGG | + | tig0006671:11745-11764 | None:intergenic | 45.0% | |
TATAGCACACCAATGCCGTT+TGG | + | tig0006671:12118-12137 | None:intergenic | 45.0% | |
TTTCAAAAGACTCGTGGGCA+TGG | - | tig0006671:12153-12172 | Msa1343850:intron | 45.0% | |
GGATGTGGAGACCCTTTAAT+GGG | + | tig0006671:12197-12216 | None:intergenic | 45.0% | |
TGGATGTGGAGACCCTTTAA+TGG | + | tig0006671:12198-12217 | None:intergenic | 45.0% | |
TTAAAGGGTCTCCACATCCA+AGG | - | tig0006671:12198-12217 | Msa1343850:intron | 45.0% | |
ATGTGTGTGAACCTTGGATG+TGG | + | tig0006671:12212-12231 | None:intergenic | 45.0% | |
!! | AGGGTGCGGTTGTTTGTTTT+AGG | + | tig0006671:12298-12317 | None:intergenic | 45.0% |
GTACCCCCCATCACAAATTT+AGG | - | tig0006671:12814-12833 | Msa1343850:CDS | 45.0% | |
! | ACTTGAGCATTGCTACTCTG+TGG | + | tig0006671:13036-13055 | None:intergenic | 45.0% |
! | AGAATAGAGCACCACCATTG+AGG | + | tig0006671:13185-13204 | None:intergenic | 45.0% |
!! | AAATAATATCAATTTATTAT+TGG | - | tig0006671:12479-12498 | Msa1343850:CDS | 5.0% |
!! | ATTAAAAAAGTTATTTATTA+GGG | + | tig0006671:12554-12573 | None:intergenic | 5.0% |
!! | AAATAATATCAATTTATTAT+TGG | - | tig0006671:12479-12498 | Msa1343850:CDS | 5.0% |
!! | ATTAAAAAAGTTATTTATTA+GGG | + | tig0006671:12554-12573 | None:intergenic | 5.0% |
GGTGGTAGGAGTGGTAAATG+TGG | + | tig0006671:11278-11297 | None:intergenic | 50.0% | |
TTTCAATCGGAGGTGGAGGA+GGG | + | tig0006671:11312-11331 | None:intergenic | 50.0% | |
GTTGTGGTGGTTTCAATCGG+AGG | + | tig0006671:11322-11341 | None:intergenic | 50.0% | |
TGAAACCACCACAACCACCA+CGG | - | tig0006671:11327-11346 | Msa1343850:CDS | 50.0% | |
TGCTATGTTATTGGCCGTGG+TGG | + | tig0006671:11344-11363 | None:intergenic | 50.0% | |
!! | TATTGTAGGTGGTGGAGGTG+GGG | + | tig0006671:11564-11583 | None:intergenic | 50.0% |
!! | GATATTGTAGGTGGTGGAGG+TGG | + | tig0006671:11566-11585 | None:intergenic | 50.0% |
! | TGGGATATTGTAGGTGGTGG+AGG | + | tig0006671:11569-11588 | None:intergenic | 50.0% |
GGATGGGATATTGTAGGTGG+TGG | + | tig0006671:11572-11591 | None:intergenic | 50.0% | |
GGGGGTAATAGTATGGAGAG+TGG | + | tig0006671:11680-11699 | None:intergenic | 50.0% | |
AGGGGTCGGGGTGATTATAT+TGG | + | tig0006671:11725-11744 | None:intergenic | 50.0% | |
AGTAGAGATGATAGGGGTCG+GGG | + | tig0006671:11737-11756 | None:intergenic | 50.0% | |
CAGTAGAGATGATAGGGGTC+GGG | + | tig0006671:11738-11757 | None:intergenic | 50.0% | |
GCAGTAGAGATGATAGGGGT+CGG | + | tig0006671:11739-11758 | None:intergenic | 50.0% | |
! | GTTGTTGTTCCGCGAGTGTT+AGG | + | tig0006671:11825-11844 | None:intergenic | 50.0% |
TCGTGGGCATGGAGGAAATA+TGG | - | tig0006671:12164-12183 | Msa1343850:intron | 50.0% | |
TTACCCGTTGTCGAAGAAGC+TGG | - | tig0006671:12949-12968 | Msa1343850:CDS | 50.0% | |
TACCCGTTGTCGAAGAAGCT+GGG | - | tig0006671:12950-12969 | Msa1343850:CDS | 50.0% | |
TGACCCAGCTTCTTCGACAA+CGG | + | tig0006671:12956-12975 | None:intergenic | 50.0% | |
ATGGACTTCAACCGCCTCAA+TGG | - | tig0006671:13168-13187 | Msa1343850:CDS | 50.0% | |
! | ATAGAGCACCACCATTGAGG+CGG | + | tig0006671:13182-13201 | None:intergenic | 50.0% |
GGTGGTAGGAGTGGTAAATG+TGG | + | tig0006671:11278-11297 | None:intergenic | 50.0% | |
TTTCAATCGGAGGTGGAGGA+GGG | + | tig0006671:11312-11331 | None:intergenic | 50.0% | |
GTTGTGGTGGTTTCAATCGG+AGG | + | tig0006671:11322-11341 | None:intergenic | 50.0% | |
TGAAACCACCACAACCACCA+CGG | - | tig0006671:11327-11346 | Msa1343850:CDS | 50.0% | |
TGCTATGTTATTGGCCGTGG+TGG | + | tig0006671:11344-11363 | None:intergenic | 50.0% | |
!! | TATTGTAGGTGGTGGAGGTG+GGG | + | tig0006671:11564-11583 | None:intergenic | 50.0% |
!! | GATATTGTAGGTGGTGGAGG+TGG | + | tig0006671:11566-11585 | None:intergenic | 50.0% |
! | TGGGATATTGTAGGTGGTGG+AGG | + | tig0006671:11569-11588 | None:intergenic | 50.0% |
GGATGGGATATTGTAGGTGG+TGG | + | tig0006671:11572-11591 | None:intergenic | 50.0% | |
GGGGGTAATAGTATGGAGAG+TGG | + | tig0006671:11680-11699 | None:intergenic | 50.0% | |
AGGGGTCGGGGTGATTATAT+TGG | + | tig0006671:11725-11744 | None:intergenic | 50.0% | |
AGTAGAGATGATAGGGGTCG+GGG | + | tig0006671:11737-11756 | None:intergenic | 50.0% | |
CAGTAGAGATGATAGGGGTC+GGG | + | tig0006671:11738-11757 | None:intergenic | 50.0% | |
GCAGTAGAGATGATAGGGGT+CGG | + | tig0006671:11739-11758 | None:intergenic | 50.0% | |
! | GTTGTTGTTCCGCGAGTGTT+AGG | + | tig0006671:11825-11844 | None:intergenic | 50.0% |
TCGTGGGCATGGAGGAAATA+TGG | - | tig0006671:12164-12183 | Msa1343850:intron | 50.0% | |
TTACCCGTTGTCGAAGAAGC+TGG | - | tig0006671:12949-12968 | Msa1343850:CDS | 50.0% | |
TACCCGTTGTCGAAGAAGCT+GGG | - | tig0006671:12950-12969 | Msa1343850:CDS | 50.0% | |
TGACCCAGCTTCTTCGACAA+CGG | + | tig0006671:12956-12975 | None:intergenic | 50.0% | |
ATGGACTTCAACCGCCTCAA+TGG | - | tig0006671:13168-13187 | Msa1343850:CDS | 50.0% | |
! | ATAGAGCACCACCATTGAGG+CGG | + | tig0006671:13182-13201 | None:intergenic | 50.0% |
GTTTCAATCGGAGGTGGAGG+AGG | + | tig0006671:11313-11332 | None:intergenic | 55.0% | |
GTGGTTTCAATCGGAGGTGG+AGG | + | tig0006671:11316-11335 | None:intergenic | 55.0% | |
GTGGTGGTTTCAATCGGAGG+TGG | + | tig0006671:11319-11338 | None:intergenic | 55.0% | |
GTTATTGGCCGTGGTGGTTG+TGG | + | tig0006671:11338-11357 | None:intergenic | 55.0% | |
TAGCTGGGGTGGAGATAGTG+GGG | + | tig0006671:11501-11520 | None:intergenic | 55.0% | |
GTAGCTGGGGTGGAGATAGT+GGG | + | tig0006671:11502-11521 | None:intergenic | 55.0% | |
AGTAGCTGGGGTGGAGATAG+TGG | + | tig0006671:11503-11522 | None:intergenic | 55.0% | |
TGGCATACTAGTAGCTGGGG+TGG | + | tig0006671:11512-11531 | None:intergenic | 55.0% | |
!! | ATTGTAGGTGGTGGAGGTGG+GGG | + | tig0006671:11563-11582 | None:intergenic | 55.0% |
GGGGGATGGGATATTGTAGG+TGG | + | tig0006671:11575-11594 | None:intergenic | 55.0% | |
CAGGGGGGATGGGATATTGT+AGG | + | tig0006671:11578-11597 | None:intergenic | 55.0% | |
!! | GAGTAGTGATGGTGGGAGTG+TGG | + | tig0006671:11654-11673 | None:intergenic | 55.0% |
! | GTGGTGGGAGTAGTGATGGT+GGG | + | tig0006671:11661-11680 | None:intergenic | 55.0% |
! | AGTGGTGGGAGTAGTGATGG+TGG | + | tig0006671:11662-11681 | None:intergenic | 55.0% |
! | GAGAGTGGTGGGAGTAGTGA+TGG | + | tig0006671:11665-11684 | None:intergenic | 55.0% |
CAAAAGACTCGTGGGCATGG+AGG | - | tig0006671:12156-12175 | Msa1343850:intron | 55.0% | |
! | ACATGGGCATTGCTGCTCTC+CGG | + | tig0006671:12874-12893 | Msa1343860:CDS | 55.0% |
GACCCAGCTTCTTCGACAAC+GGG | + | tig0006671:12955-12974 | None:intergenic | 55.0% | |
GACTTCAACCGCCTCAATGG+TGG | - | tig0006671:13171-13190 | Msa1343850:CDS | 55.0% | |
GTTTCAATCGGAGGTGGAGG+AGG | + | tig0006671:11313-11332 | None:intergenic | 55.0% | |
GTGGTTTCAATCGGAGGTGG+AGG | + | tig0006671:11316-11335 | None:intergenic | 55.0% | |
GTGGTGGTTTCAATCGGAGG+TGG | + | tig0006671:11319-11338 | None:intergenic | 55.0% | |
GTTATTGGCCGTGGTGGTTG+TGG | + | tig0006671:11338-11357 | None:intergenic | 55.0% | |
TAGCTGGGGTGGAGATAGTG+GGG | + | tig0006671:11501-11520 | None:intergenic | 55.0% | |
GTAGCTGGGGTGGAGATAGT+GGG | + | tig0006671:11502-11521 | None:intergenic | 55.0% | |
AGTAGCTGGGGTGGAGATAG+TGG | + | tig0006671:11503-11522 | None:intergenic | 55.0% | |
TGGCATACTAGTAGCTGGGG+TGG | + | tig0006671:11512-11531 | None:intergenic | 55.0% | |
!! | ATTGTAGGTGGTGGAGGTGG+GGG | + | tig0006671:11563-11582 | None:intergenic | 55.0% |
GGGGGATGGGATATTGTAGG+TGG | + | tig0006671:11575-11594 | None:intergenic | 55.0% | |
CAGGGGGGATGGGATATTGT+AGG | + | tig0006671:11578-11597 | None:intergenic | 55.0% | |
!! | GAGTAGTGATGGTGGGAGTG+TGG | + | tig0006671:11654-11673 | None:intergenic | 55.0% |
! | GTGGTGGGAGTAGTGATGGT+GGG | + | tig0006671:11661-11680 | None:intergenic | 55.0% |
! | AGTGGTGGGAGTAGTGATGG+TGG | + | tig0006671:11662-11681 | None:intergenic | 55.0% |
! | GAGAGTGGTGGGAGTAGTGA+TGG | + | tig0006671:11665-11684 | None:intergenic | 55.0% |
CAAAAGACTCGTGGGCATGG+AGG | - | tig0006671:12156-12175 | Msa1343850:intron | 55.0% | |
! | ACATGGGCATTGCTGCTCTC+CGG | + | tig0006671:12874-12893 | Msa1343860:CDS | 55.0% |
GACCCAGCTTCTTCGACAAC+GGG | + | tig0006671:12955-12974 | None:intergenic | 55.0% | |
GACTTCAACCGCCTCAATGG+TGG | - | tig0006671:13171-13190 | Msa1343850:CDS | 55.0% | |
ATTGGCCGTGGTGGTTGTGG+TGG | + | tig0006671:11335-11354 | None:intergenic | 60.0% | |
!! | GGGGTGGAGATAGTGGGGAT+GGG | + | tig0006671:11496-11515 | None:intergenic | 60.0% |
!! | TGGGGTGGAGATAGTGGGGA+TGG | + | tig0006671:11497-11516 | None:intergenic | 60.0% |
! | GGGGGAAGATGTGGTGGTGA+TGG | + | tig0006671:11545-11564 | None:intergenic | 60.0% |
!! | GTTGGTGATGTGGGTGGGGA+TGG | + | tig0006671:11608-11627 | None:intergenic | 60.0% |
ATTGGCCGTGGTGGTTGTGG+TGG | + | tig0006671:11335-11354 | None:intergenic | 60.0% | |
!! | GGGGTGGAGATAGTGGGGAT+GGG | + | tig0006671:11496-11515 | None:intergenic | 60.0% |
!! | TGGGGTGGAGATAGTGGGGA+TGG | + | tig0006671:11497-11516 | None:intergenic | 60.0% |
! | GGGGGAAGATGTGGTGGTGA+TGG | + | tig0006671:11545-11564 | None:intergenic | 60.0% |
!! | GTTGGTGATGTGGGTGGGGA+TGG | + | tig0006671:11608-11627 | None:intergenic | 60.0% |
GGAGGTGGGGGAAGATGTGG+TGG | + | tig0006671:11551-11570 | None:intergenic | 65.0% | |
GGTGGAGGTGGGGGAAGATG+TGG | + | tig0006671:11554-11573 | None:intergenic | 65.0% | |
!! | TGGTGGTGGTCAGGGGGGAT+GGG | + | tig0006671:11588-11607 | None:intergenic | 65.0% |
!! | ATGGTGGTGGTCAGGGGGGA+TGG | + | tig0006671:11589-11608 | None:intergenic | 65.0% |
!! | TGGGGATGGTGGTGGTCAGG+GGG | + | tig0006671:11594-11613 | None:intergenic | 65.0% |
!! | GTGGGGATGGTGGTGGTCAG+GGG | + | tig0006671:11595-11614 | None:intergenic | 65.0% |
!! | GGTGGGGATGGTGGTGGTCA+GGG | + | tig0006671:11596-11615 | None:intergenic | 65.0% |
! | GATGTGGGTGGGGATGGTGG+TGG | + | tig0006671:11602-11621 | None:intergenic | 65.0% |
GGTGATGTGGGTGGGGATGG+TGG | + | tig0006671:11605-11624 | None:intergenic | 65.0% | |
GGAGGTGGGGGAAGATGTGG+TGG | + | tig0006671:11551-11570 | None:intergenic | 65.0% | |
GGTGGAGGTGGGGGAAGATG+TGG | + | tig0006671:11554-11573 | None:intergenic | 65.0% | |
!! | TGGTGGTGGTCAGGGGGGAT+GGG | + | tig0006671:11588-11607 | None:intergenic | 65.0% |
!! | ATGGTGGTGGTCAGGGGGGA+TGG | + | tig0006671:11589-11608 | None:intergenic | 65.0% |
!! | TGGGGATGGTGGTGGTCAGG+GGG | + | tig0006671:11594-11613 | None:intergenic | 65.0% |
!! | GTGGGGATGGTGGTGGTCAG+GGG | + | tig0006671:11595-11614 | None:intergenic | 65.0% |
!! | GGTGGGGATGGTGGTGGTCA+GGG | + | tig0006671:11596-11615 | None:intergenic | 65.0% |
! | GATGTGGGTGGGGATGGTGG+TGG | + | tig0006671:11602-11621 | None:intergenic | 65.0% |
GGTGATGTGGGTGGGGATGG+TGG | + | tig0006671:11605-11624 | None:intergenic | 65.0% | |
!! | GGGGATGGTGGTGGTCAGGG+GGG | + | tig0006671:11593-11612 | None:intergenic | 70.0% |
!! | GGGTGGGGATGGTGGTGGTC+AGG | + | tig0006671:11597-11616 | None:intergenic | 70.0% |
!! | GGGGATGGTGGTGGTCAGGG+GGG | + | tig0006671:11593-11612 | None:intergenic | 70.0% |
!! | GGGTGGGGATGGTGGTGGTC+AGG | + | tig0006671:11597-11616 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
tig0006671 | gene | 11223 | 13209 | 11223 | ID=Msa1343850;Name=Msa1343850 |
tig0006671 | mRNA | 11223 | 13209 | 11223 | ID=Msa1343850-mRNA-1;Parent=Msa1343850;Name=Msa1343850-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|1|1|1|4|0|393 |
tig0006671 | exon | 12461 | 13209 | 12461 | ID=Msa1343850-mRNA-1:exon:4301;Parent=Msa1343850-mRNA-1 |
tig0006671 | exon | 12213 | 12329 | 12213 | ID=Msa1343850-mRNA-1:exon:4300;Parent=Msa1343850-mRNA-1 |
tig0006671 | exon | 11716 | 11764 | 11716 | ID=Msa1343850-mRNA-1:exon:4299;Parent=Msa1343850-mRNA-1 |
tig0006671 | exon | 11223 | 11489 | 11223 | ID=Msa1343850-mRNA-1:exon:4298;Parent=Msa1343850-mRNA-1 |
tig0006671 | CDS | 12461 | 13209 | 12461 | ID=Msa1343850-mRNA-1:cds;Parent=Msa1343850-mRNA-1 |
tig0006671 | CDS | 12213 | 12329 | 12213 | ID=Msa1343850-mRNA-1:cds;Parent=Msa1343850-mRNA-1 |
tig0006671 | CDS | 11716 | 11764 | 11716 | ID=Msa1343850-mRNA-1:cds;Parent=Msa1343850-mRNA-1 |
tig0006671 | CDS | 11223 | 11489 | 11223 | ID=Msa1343850-mRNA-1:cds;Parent=Msa1343850-mRNA-1 |
Gene Sequence |
Protein sequence |