AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1344020

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1344020 MtrunA17_Chr8g0355091 89.873 237 24 0 1 237 1 237 1.33e-159 441
Msa1344020 MtrunA17_Chr1g0206701 90.717 237 22 0 1 237 1 237 1.04e-154 429
Msa1344020 MtrunA17_Chr1g0206721 92.694 219 16 0 1 219 1 219 6.42e-153 424
Msa1344020 MtrunA17_Chr2g0292791 91.561 237 20 0 1 237 1 237 7.24e-152 422
Msa1344020 MtrunA17_Chr3g0099421 87.671 219 27 0 1 219 26 244 1.74e-144 404
Msa1344020 MtrunA17_Chr1g0149391 88.608 237 27 0 1 237 1 237 2.42e-144 402
Msa1344020 MtrunA17_Chr1g0206691 82.727 220 38 0 18 237 1 220 4.69e-135 379
Msa1344020 MtrunA17_Chr3g0099411 80.822 219 23 1 1 219 1 200 9.97e-126 355
Msa1344020 MtrunA17_Chr2g0300441 72.152 237 65 1 1 237 1 236 3.48e-121 344
Msa1344020 MtrunA17_Chr5g0422941 68.354 237 75 0 1 237 1 237 4.29e-121 344
Msa1344020 MtrunA17_Chr3g0089141 74.043 235 43 3 1 225 1 227 8.03e-121 343
Msa1344020 MtrunA17_Chr1g0208561 74.043 235 43 3 1 225 1 227 2.56e-120 342
Msa1344020 MtrunA17_Chr1g0188671 71.556 225 64 0 1 225 39 263 4.11e-119 340
Msa1344020 MtrunA17_Chr1g0206991 89.011 182 20 0 1 182 1 182 5.57e-119 336
Msa1344020 MtrunA17_Chr2g0325971 73.617 235 44 3 1 225 1 227 3.58e-118 336
Msa1344020 MtrunA17_Chr2g0317451 66.949 236 78 0 1 236 1 236 6.60e-118 336
Msa1344020 MtrunA17_Chr1g0187361 71.111 225 65 0 1 225 1 225 2.18e-117 334
Msa1344020 MtrunA17_Chr2g0317481 66.949 236 78 0 1 236 1 236 2.22e-117 334
Msa1344020 MtrunA17_Chr1g0208581 71.489 235 49 3 1 225 1 227 1.65e-114 327
Msa1344020 MtrunA17_Chr5g0419601 70.042 237 71 0 1 237 1 237 2.02e-114 327
Msa1344020 MtrunA17_Chr5g0422421 68.889 225 70 0 1 225 1 225 7.48e-113 323
Msa1344020 MtrunA17_Chr7g0238991 64.831 236 81 2 3 237 14 248 1.30e-102 297
Msa1344020 MtrunA17_Chr2g0300421 78.906 128 27 0 1 128 1 128 3.27e-68 207
Msa1344020 MtrunA17_Chr3g0085241 55.294 170 76 0 3 172 35 204 1.39e-66 206
Msa1344020 MtrunA17_Chr3g0089151 75.969 129 31 0 1 129 1 129 2.27e-65 199
Msa1344020 MtrunA17_Chr3g0119901 56.024 166 73 0 7 172 7 172 3.97e-65 201
Msa1344020 MtrunA17_Chr3g0111931 69.608 102 31 0 21 122 2 103 4.31e-47 151
Msa1344020 MtrunA17_Chr2g0333981 39.766 171 93 2 5 172 8 171 6.42e-41 138
Msa1344020 MtrunA17_Chr8g0379021 41.566 166 87 2 5 167 8 166 1.07e-40 137
Msa1344020 MtrunA17_Chr4g0018951 44.516 155 74 3 5 159 8 150 1.12e-34 122
Msa1344020 MtrunA17_Chr1g0187351 81.818 66 12 0 18 83 1 66 2.84e-34 117
Msa1344020 MtrunA17_Chr4g0071601 37.500 184 95 4 5 175 8 184 3.99e-31 113
Msa1344020 MtrunA17_Chr3g0111841 83.051 59 10 0 15 73 2 60 1.45e-29 105
Msa1344020 MtrunA17_Chr1g0175601 47.525 101 51 1 9 109 2 100 1.40e-25 98.6
Msa1344020 MtrunA17_Chr1g0169761 62.319 69 26 0 9 77 2 70 1.18e-24 96.3
Msa1344020 MtrunA17_Chr8g0376821 62.319 69 26 0 9 77 2 70 2.40e-24 95.5
Msa1344020 MtrunA17_Chr3g0111831 68.852 61 19 0 16 76 11 71 5.19e-24 91.7
Msa1344020 MtrunA17_Chr4g0074101 40.517 116 54 2 9 109 2 117 5.94e-24 95.1
Msa1344020 MtrunA17_Chr1g0175611 46.535 101 52 1 9 109 2 100 1.09e-23 93.6
Msa1344020 MtrunA17_Chr1g0180591 48.544 103 51 2 9 109 2 104 1.19e-23 93.6
Msa1344020 MtrunA17_Chr8g0357771 42.857 126 67 2 9 131 2 125 1.40e-23 93.6
Msa1344020 MtrunA17_Chr8g0356071 40.152 132 67 3 9 135 2 126 1.04e-22 90.9
Msa1344020 MtrunA17_Chr4g0052061 40.708 113 64 2 9 120 2 112 1.15e-20 85.1
Msa1344020 MtrunA17_Chr4g0049901 33.939 165 86 3 10 153 29 191 2.61e-19 83.6
Msa1344020 MtrunA17_Chr3g0077501 52.941 68 32 0 9 76 2 69 3.52e-19 82.8
Msa1344020 MtrunA17_Chr3g0097101 42.453 106 51 1 3 108 11 106 5.22e-19 82.8
Msa1344020 MtrunA17_Chr4g0052081 41.509 106 61 1 9 113 2 107 1.34e-18 80.5
Msa1344020 MtrunA17_Chr4g0057151 50.685 73 36 0 10 82 3 75 2.38e-18 80.5
Msa1344020 MtrunA17_Chr8g0345001 33.544 158 92 3 8 159 17 167 6.03e-18 78.6
Msa1344020 MtrunA17_Chr8g0351051 33.929 168 95 5 9 167 2 162 9.13e-18 79.7
Msa1344020 MtrunA17_Chr5g0427401 51.471 68 33 0 9 76 2 69 1.48e-17 78.6
Msa1344020 MtrunA17_Chr2g0284911 41.346 104 60 1 9 112 17 119 2.37e-17 78.6
Msa1344020 MtrunA17_Chr8g0351041 47.436 78 41 0 10 87 3 80 2.64e-17 76.6
Msa1344020 MtrunA17_Chr8g0380021 51.471 68 33 0 9 76 18 85 2.72e-17 78.2
Msa1344020 MtrunA17_Chr6g0474371 49.275 69 34 1 9 76 2 70 3.15e-17 77.0
Msa1344020 MtrunA17_Chr3g0134451 42.308 104 57 3 9 111 2 103 4.47e-17 78.6
Msa1344020 MtrunA17_Chr5g0412461 29.108 213 127 6 9 201 2 210 5.29e-17 77.0
Msa1344020 MtrunA17_Chr3g0093131 34.965 143 76 4 26 159 36 170 8.06e-17 75.9
Msa1344020 MtrunA17_Chr5g0412271 30.047 213 126 8 9 201 2 211 8.43e-17 76.6
Msa1344020 MtrunA17_Chr4g0061691 47.826 69 35 1 9 76 2 70 1.20e-16 76.3
Msa1344020 MtrunA17_Chr7g0246431 38.182 110 66 1 10 119 3 110 1.21e-16 75.9
Msa1344020 MtrunA17_Chr2g0279821 48.529 68 35 0 9 76 2 69 1.26e-16 76.3
Msa1344020 MtrunA17_Chr8g0351031 47.436 78 41 0 10 87 3 80 1.33e-16 75.9
Msa1344020 MtrunA17_Chr1g0204111 50.000 68 34 0 9 76 18 85 2.83e-16 75.5
Msa1344020 MtrunA17_Chr4g0020221 42.683 82 47 0 9 90 2 83 4.99e-16 75.1
Msa1344020 MtrunA17_Chr4g0049541 47.059 68 36 0 9 76 2 69 1.04e-15 73.6
Msa1344020 MtrunA17_Chr6g0455511 49.275 69 34 1 9 76 2 70 1.09e-15 73.9
Msa1344020 MtrunA17_Chr7g0220111 49.275 69 34 1 9 76 2 70 1.19e-15 73.9
Msa1344020 MtrunA17_Chr8g0366231 40.964 83 46 1 9 91 2 81 1.45e-15 73.6
Msa1344020 MtrunA17_Chr5g0411691 48.529 68 35 0 9 76 2 69 1.57e-15 73.2
Msa1344020 MtrunA17_Chr1g0173161 52.459 61 29 0 9 69 2 62 2.40e-15 68.9
Msa1344020 MtrunA17_Chr5g0420081 45.070 71 36 1 9 79 2 69 4.01e-15 72.0
Msa1344020 MtrunA17_Chr5g0425191 56.604 53 23 0 9 61 2 54 4.39e-15 68.9
Msa1344020 MtrunA17_Chr5g0404951 50.000 70 33 1 9 76 2 71 4.82e-15 72.0
Msa1344020 MtrunA17_Chr2g0308251 47.826 69 36 0 9 77 2 70 6.05e-15 68.2
Msa1344020 MtrunA17_Chr5g0420091 47.826 69 35 1 9 76 2 70 8.54e-15 70.9
Msa1344020 MtrunA17_Chr4g0044071 52.632 57 27 0 9 65 2 58 1.27e-14 68.2
Msa1344020 MtrunA17_Chr7g0246381 48.485 66 29 1 9 69 2 67 1.43e-14 66.6
Msa1344020 MtrunA17_Chr8g0377561 53.571 56 26 0 9 64 2 57 1.84e-14 67.0
Msa1344020 MtrunA17_Chr7g0220121 43.478 69 38 1 9 76 2 70 2.01e-14 70.5
Msa1344020 MtrunA17_Chr3g0122251 41.237 97 54 1 9 105 2 95 2.10e-14 70.5
Msa1344020 MtrunA17_Chr1g0164791 47.143 70 35 1 9 76 2 71 2.76e-14 69.7
Msa1344020 MtrunA17_Chr5g0427921 49.123 57 29 0 9 65 2 58 3.17e-14 65.5
Msa1344020 MtrunA17_Chr4g0061671 50.877 57 28 0 9 65 2 58 4.26e-14 68.6
Msa1344020 MtrunA17_Chr3g0125241 44.286 70 37 1 9 76 27 96 4.52e-14 68.6
Msa1344020 MtrunA17_Chr1g0159661 46.970 66 34 1 9 74 2 66 5.07e-14 68.2
Msa1344020 MtrunA17_Chr3g0142191 28.814 177 98 5 9 181 2 154 1.17e-13 68.2
Msa1344020 MtrunA17_Chr4g0025531 30.198 202 112 6 5 198 5 185 2.22e-12 64.7
Msa1344020 MtrunA17_Chr2g0302091 31.288 163 84 7 7 159 36 180 6.75e-12 62.8
Msa1344020 MtrunA17_Chr5g0417661 42.029 69 34 1 9 77 57 119 1.33e-11 60.5
Msa1344020 MtrunA17_Chr4g0060841 28.409 176 104 9 9 172 2 167 1.99e-11 62.8
Msa1344020 MtrunA17_Chr4g0018421 40.000 70 41 1 9 77 2 71 2.51e-11 61.2
Msa1344020 MtrunA17_Chr1g0166611 36.190 105 58 2 20 123 17 113 7.66e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1344020 AT5G60440.1 55.914 186 75 3 5 187 3 184 8.98e-64 201
Msa1344020 AT2G24840.1 50.000 164 71 4 6 163 60 218 9.37e-46 153
Msa1344020 AT1G65360.1 40.088 227 121 6 5 225 3 220 1.13e-42 144
Msa1344020 AT1G01530.1 42.632 190 101 3 4 192 2 184 2.50e-42 144
Msa1344020 AT4G36590.1 46.951 164 77 4 5 160 3 164 5.88e-40 138
Msa1344020 AT2G34440.1 45.299 117 55 2 9 121 2 113 7.94e-27 102
Msa1344020 AT3G04100.1 32.716 162 105 3 2 159 7 168 4.15e-26 101
Msa1344020 AT3G66656.1 43.697 119 63 1 9 123 2 120 1.33e-25 99.0
Msa1344020 AT1G72350.1 36.184 152 64 4 9 160 43 161 6.76e-23 93.2
Msa1344020 AT1G28460.1 29.586 169 115 2 5 169 4 172 1.94e-20 85.5
Msa1344020 AT4G22950.2 49.351 77 39 0 10 86 3 79 2.23e-19 82.4
Msa1344020 AT1G29962.1 29.651 172 114 4 5 169 4 175 2.47e-19 82.8
Msa1344020 AT4G09960.2 46.512 86 45 1 9 93 2 87 2.62e-19 83.6
Msa1344020 AT4G09960.1 46.512 86 45 1 9 93 2 87 3.04e-19 83.6
Msa1344020 AT4G09960.6 46.512 86 45 1 9 93 3 88 3.23e-19 83.6
Msa1344020 AT4G09960.5 46.512 86 45 1 9 93 12 97 4.51e-19 83.2
Msa1344020 AT4G22950.3 40.909 110 62 1 10 119 3 109 5.72e-19 82.8
Msa1344020 AT4G22950.1 40.909 110 62 1 10 119 3 109 5.72e-19 82.8
Msa1344020 AT4G09960.3 46.512 86 45 1 9 93 28 113 6.19e-19 83.2
Msa1344020 AT2G45660.2 52.941 68 32 0 10 77 3 70 1.04e-18 80.5
Msa1344020 AT2G45650.1 52.941 68 32 0 9 76 2 69 1.41e-18 82.4
Msa1344020 AT4G09960.4 46.512 86 45 1 9 93 97 182 1.71e-18 83.2
Msa1344020 AT4G18960.1 31.513 238 137 10 5 226 15 242 3.23e-18 81.3
Msa1344020 AT2G45660.1 52.941 68 32 0 10 77 3 70 3.30e-18 80.5
Msa1344020 AT2G22540.3 39.855 138 63 5 9 132 2 133 3.47e-18 80.9
Msa1344020 AT2G22540.1 39.855 138 63 5 9 132 2 133 3.47e-18 80.9
Msa1344020 AT5G51870.2 53.731 67 31 0 10 76 3 69 3.42e-17 76.6
Msa1344020 AT3G57230.2 47.059 68 36 0 9 76 2 69 3.76e-17 75.9
Msa1344020 AT2G42830.1 47.368 76 40 0 1 76 9 84 4.00e-17 78.2
Msa1344020 AT2G42830.2 47.368 76 40 0 1 76 9 84 4.25e-17 78.2
Msa1344020 AT3G58780.1 50.704 71 35 0 6 76 14 84 4.56e-17 78.2
Msa1344020 AT5G51870.1 53.731 67 31 0 10 76 3 69 4.58e-17 77.4
Msa1344020 AT3G58780.5 50.704 71 35 0 6 76 20 90 4.94e-17 78.2
Msa1344020 AT3G61120.1 51.471 68 33 0 9 76 2 69 6.32e-17 77.8
Msa1344020 AT5G51870.5 50.000 72 36 0 5 76 21 92 7.26e-17 76.6
Msa1344020 AT4G24540.1 51.471 68 33 0 9 76 2 69 8.04e-17 77.0
Msa1344020 AT1G17310.1 36.905 168 65 5 8 170 47 178 8.54e-17 76.6
Msa1344020 AT5G51870.4 53.731 67 31 0 10 76 3 69 8.66e-17 76.6
Msa1344020 AT3G58780.4 50.704 71 35 0 6 76 14 84 9.39e-17 77.8
Msa1344020 AT1G17310.2 36.905 168 65 5 8 170 58 189 1.02e-16 76.6
Msa1344020 AT5G51870.3 53.731 67 31 0 10 76 13 79 1.07e-16 76.6
Msa1344020 AT5G10140.2 50.725 69 33 1 9 76 2 70 1.19e-16 75.1
Msa1344020 AT3G57390.3 50.000 68 34 0 9 76 2 69 1.24e-16 76.6
Msa1344020 AT5G62165.14 49.254 67 34 0 10 76 3 69 1.40e-16 73.6
Msa1344020 AT4G37940.4 48.529 68 35 0 9 76 2 69 1.61e-16 75.9
Msa1344020 AT5G62165.17 49.254 67 34 0 10 76 3 69 1.68e-16 74.7
Msa1344020 AT5G62165.12 49.254 67 34 0 10 76 3 69 1.68e-16 74.7
Msa1344020 AT5G62165.11 49.254 67 34 0 10 76 3 69 1.68e-16 74.7
Msa1344020 AT1G22130.1 37.143 105 65 1 9 112 2 106 1.69e-16 77.8
Msa1344020 AT4G37940.1 48.529 68 35 0 9 76 2 69 1.80e-16 76.3
Msa1344020 AT1G28450.1 27.950 161 110 3 5 159 4 164 1.81e-16 75.1
Msa1344020 AT4G37940.3 48.529 68 35 0 9 76 2 69 1.82e-16 75.1
Msa1344020 AT5G13790.2 43.011 93 44 1 9 101 2 85 1.91e-16 76.6
Msa1344020 AT5G62165.6 49.254 67 34 0 10 76 3 69 1.97e-16 74.3
Msa1344020 AT5G62165.9 49.254 67 34 0 10 76 3 69 1.97e-16 74.3
Msa1344020 AT5G62165.7 49.254 67 34 0 10 76 3 69 1.97e-16 74.3
Msa1344020 AT5G62165.8 49.254 67 34 0 10 76 3 69 1.97e-16 74.3
Msa1344020 AT5G62165.13 49.254 67 34 0 10 76 3 69 1.97e-16 74.3
Msa1344020 AT5G10140.4 50.725 69 33 1 9 76 2 70 2.08e-16 75.1
Msa1344020 AT3G57230.1 47.059 68 36 0 9 76 2 69 2.12e-16 76.3
Msa1344020 AT3G57230.4 47.059 68 36 0 9 76 2 69 2.12e-16 76.3
Msa1344020 AT1G77980.1 38.095 105 64 1 9 112 2 106 2.28e-16 77.4
Msa1344020 AT5G10140.3 50.725 69 33 1 9 76 2 70 2.32e-16 74.7
Msa1344020 AT5G10140.1 50.725 69 33 1 9 76 2 70 2.39e-16 75.1
Msa1344020 AT5G13790.1 51.471 68 33 0 9 76 2 69 2.80e-16 76.3
Msa1344020 AT3G57390.1 50.000 68 34 0 9 76 2 69 2.92e-16 75.9
Msa1344020 AT4G11880.2 48.611 72 36 1 10 80 3 74 4.37e-16 73.9
Msa1344020 AT4G11880.3 48.611 72 36 1 10 80 3 74 4.37e-16 73.9
Msa1344020 AT5G51860.2 52.239 67 32 0 10 76 3 69 5.17e-16 74.3
Msa1344020 AT1G69120.2 43.373 83 44 1 9 91 2 81 5.32e-16 75.1
Msa1344020 AT5G62165.10 49.254 67 34 0 10 76 3 69 6.97e-16 73.9
Msa1344020 AT5G62165.4 49.254 67 34 0 10 76 3 69 6.97e-16 73.9
Msa1344020 AT5G62165.3 49.254 67 34 0 10 76 3 69 7.02e-16 73.9
Msa1344020 AT5G62165.1 49.254 67 34 0 10 76 3 69 7.02e-16 73.9
Msa1344020 AT5G62165.2 49.254 67 34 0 10 76 3 69 7.02e-16 73.9
Msa1344020 AT1G77950.3 46.053 76 39 2 9 83 2 76 7.66e-16 74.7
Msa1344020 AT1G77950.2 46.053 76 39 2 9 83 2 76 7.66e-16 74.7
Msa1344020 AT1G77950.1 46.053 76 39 2 9 83 2 76 7.66e-16 74.7
Msa1344020 AT1G77950.4 46.053 76 39 2 9 83 2 76 7.66e-16 74.7
Msa1344020 AT5G51860.1 52.239 67 32 0 10 76 3 69 7.75e-16 73.9
Msa1344020 AT5G60910.1 49.296 71 33 1 9 79 2 69 7.97e-16 74.7
Msa1344020 AT2G22630.1 47.059 68 36 0 9 76 2 69 8.60e-16 74.3
Msa1344020 AT2G22630.2 47.059 68 36 0 9 76 2 69 8.60e-16 74.3
Msa1344020 AT4G11880.4 48.611 72 36 1 10 80 3 74 9.27e-16 73.9
Msa1344020 AT4G11880.1 48.611 72 36 1 10 80 3 74 9.27e-16 73.9
Msa1344020 AT1G69120.1 40.659 91 51 1 9 99 2 89 1.05e-15 74.3
Msa1344020 AT1G26310.1 47.826 69 35 1 9 76 2 70 1.32e-15 74.3
Msa1344020 AT2G22540.2 39.130 138 59 6 9 132 2 128 1.37e-15 73.9
Msa1344020 AT3G54340.1 47.143 70 35 1 9 76 2 71 1.78e-15 73.6
Msa1344020 AT3G30260.1 46.377 69 36 1 9 76 2 70 1.86e-15 73.6
Msa1344020 AT5G15800.1 49.275 69 34 1 9 76 2 70 3.06e-15 73.2
Msa1344020 AT1G24260.3 29.583 240 135 9 9 234 2 221 3.37e-15 72.8
Msa1344020 AT5G20240.2 47.143 70 35 1 9 76 2 71 4.91e-15 70.5
Msa1344020 AT5G15800.2 49.275 69 34 1 9 76 2 70 5.48e-15 72.8
Msa1344020 AT2G14210.1 46.377 69 36 1 9 76 2 70 5.86e-15 72.0
Msa1344020 AT5G20240.1 47.143 70 35 1 9 76 2 71 7.37e-15 71.2
Msa1344020 AT2G14210.2 46.377 69 36 1 9 76 2 70 7.65e-15 71.6
Msa1344020 AT1G24260.2 29.600 250 136 10 9 234 2 235 1.23e-14 71.6
Msa1344020 AT5G23260.1 43.299 97 47 3 2 90 9 105 1.68e-14 71.2
Msa1344020 AT5G65050.2 46.377 69 36 1 9 76 2 70 1.68e-14 69.7
Msa1344020 AT5G23260.4 43.299 97 47 3 2 90 9 105 1.76e-14 71.2
Msa1344020 AT3G02310.2 47.826 69 35 1 9 76 2 70 2.07e-14 70.1
Msa1344020 AT3G58780.2 52.459 61 29 0 6 66 14 74 2.10e-14 70.5
Msa1344020 AT5G65050.5 46.377 69 36 1 9 76 2 70 2.77e-14 69.3
Msa1344020 AT3G58780.3 52.459 61 29 0 6 66 14 74 2.90e-14 70.9
Msa1344020 AT5G65050.3 46.377 69 36 1 9 76 2 70 3.18e-14 69.3
Msa1344020 AT5G23260.2 44.318 88 43 2 9 90 2 89 3.33e-14 70.1
Msa1344020 AT5G23260.3 44.318 88 43 2 9 90 2 89 3.36e-14 70.1
Msa1344020 AT5G65050.1 46.377 69 36 1 9 76 2 70 3.59e-14 68.9
Msa1344020 AT2G03710.3 53.571 56 26 0 9 64 2 57 5.03e-14 68.6
Msa1344020 AT5G65060.3 46.377 69 36 1 9 76 2 70 5.35e-14 68.6
Msa1344020 AT3G02310.1 47.826 69 35 1 9 76 2 70 5.45e-14 69.7
Msa1344020 AT5G65060.2 46.377 69 36 1 9 76 2 70 5.54e-14 68.6
Msa1344020 AT1G24260.1 29.365 252 133 11 9 234 2 234 6.15e-14 69.3
Msa1344020 AT5G65060.1 46.377 69 36 1 9 76 2 70 6.67e-14 68.6
Msa1344020 AT1G47760.1 34.483 116 61 3 9 123 2 103 7.54e-14 68.2
Msa1344020 AT2G03710.1 45.714 70 36 1 9 76 2 71 1.11e-13 68.9
Msa1344020 AT2G03710.2 45.714 70 36 1 9 76 2 71 1.13e-13 68.9
Msa1344020 AT1G71692.1 44.286 70 38 1 9 77 2 71 2.36e-13 67.4
Msa1344020 AT5G65070.4 42.029 69 39 1 9 76 2 70 2.88e-13 65.5
Msa1344020 AT5G65070.1 42.029 69 39 1 9 76 2 70 5.84e-13 65.9
Msa1344020 AT5G65070.5 42.029 69 39 1 9 76 2 70 1.10e-12 65.5
Msa1344020 AT5G65070.2 42.029 69 39 1 9 76 2 70 1.12e-12 65.9
Msa1344020 AT1G18750.4 38.667 75 44 1 9 81 2 76 5.32e-12 65.1
Msa1344020 AT5G65070.3 47.368 57 30 0 9 65 2 58 5.97e-12 63.5
Msa1344020 AT1G18750.3 38.667 75 44 1 9 81 2 76 6.10e-12 65.1
Msa1344020 AT1G18750.1 38.667 75 44 1 9 81 2 76 6.44e-12 64.7
Msa1344020 AT1G46408.1 36.134 119 67 4 10 119 5 123 1.26e-11 63.2
Msa1344020 AT1G69540.1 33.636 110 65 3 9 117 2 104 1.28e-11 63.9
Msa1344020 AT1G69540.2 33.636 110 65 3 9 117 2 104 1.57e-11 63.5
Msa1344020 AT5G65080.3 42.667 75 40 2 5 76 3 77 2.72e-11 61.2
Msa1344020 AT2G03060.3 28.070 171 106 7 9 164 2 170 3.02e-11 62.8
Msa1344020 AT2G03060.7 28.070 171 106 7 9 164 2 170 3.02e-11 62.8
Msa1344020 AT2G03060.1 28.070 171 106 7 9 164 2 170 3.02e-11 62.8
Msa1344020 AT4G37435.1 40.278 72 42 1 9 79 2 73 3.05e-11 60.8
Msa1344020 AT2G03060.2 28.070 171 106 7 9 164 2 170 3.14e-11 62.8
Msa1344020 AT2G26320.1 40.000 70 40 1 9 76 18 87 4.87e-11 58.5
Msa1344020 AT5G65080.2 43.548 62 35 0 1 62 1 62 7.08e-11 60.1
Msa1344020 AT5G27130.1 40.000 85 47 2 2 82 6 90 7.79e-11 61.2

Find 62 sgRNAs with CRISPR-Local

Find 80 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGTTTGGTTTCAACAATA+TGG 0.234944 tig0006787:+20314 Msa1344020:CDS
AGGCGACCGAAACTCAATTT+TGG 0.290261 tig0006787:+20043 Msa1344020:CDS
CTTGTGGAGGATTTGGTTGA+TGG 0.298622 tig0006787:-20242 None:intergenic
ATCTGAGCTTGTGGAGGATT+TGG 0.314155 tig0006787:-20249 None:intergenic
TGGTGGGCTGGTCCCGTTGA+TGG 0.316276 tig0006787:+20063 Msa1344020:CDS
ATTGCATGGTACCATTGTTT+TGG 0.328016 tig0006787:-19906 None:intergenic
TTGTTTGGTTTCAACAATAT+GGG 0.345119 tig0006787:+20315 Msa1344020:CDS
TGAATTATTCAAGAAGGCTT+TGG 0.346261 tig0006787:+20104 Msa1344020:CDS
TGCTGATAGGCTTGTAATCC+AGG 0.383576 tig0006787:+20155 Msa1344020:CDS
ATGTTGCAACCTCATTTGTT+TGG 0.384083 tig0006787:+20300 Msa1344020:CDS
TTGTTGCTCATCATGCTGAT+AGG 0.403840 tig0006787:+20142 Msa1344020:CDS
TCTTCTCGATGTCCAGTAGT+TGG 0.408924 tig0006787:-19990 None:intergenic
GTCCCGTTGATGGGATGAAT+AGG 0.432754 tig0006787:+20073 Msa1344020:CDS
TCTATGACCGTATCAACATT+GGG 0.442152 tig0006787:-19859 None:intergenic
CTTCTTGAATAATTCAAGTT+GGG 0.442228 tig0006787:-20097 None:intergenic
CACTTGCAAGTTGCTTTCGT+TGG 0.444023 tig0006787:-19716 None:intergenic
GGTGGGCTGGTCCCGTTGAT+GGG 0.452333 tig0006787:+20064 Msa1344020:CDS
TCCCGTTGATGGGATGAATA+GGG 0.453040 tig0006787:+20074 Msa1344020:CDS
AGCCCACCAAAATTGAGTTT+CGG 0.472023 tig0006787:-20049 None:intergenic
CCTTCTTGAATAATTCAAGT+TGG 0.480564 tig0006787:-20098 None:intergenic
GCCCTATTCATCCCATCAAC+GGG 0.481029 tig0006787:-20075 None:intergenic
GTGGAGGATTTGGTTGATGG+TGG 0.481407 tig0006787:-20239 None:intergenic
AACAAATGAGGTTGCAACAT+AGG 0.496587 tig0006787:-20297 None:intergenic
CCAACTTGAATTATTCAAGA+AGG 0.499244 tig0006787:+20098 Msa1344020:CDS
AGTATTGAGCTCGCGCACAT+TGG 0.504609 tig0006787:-19950 None:intergenic
ATCTATGACCGTATCAACAT+TGG 0.506195 tig0006787:-19860 None:intergenic
ACAGAGGGTGCAAAGCTCAC+TGG 0.525840 tig0006787:-19776 None:intergenic
ACAAATGAGGTTGCAACATA+GGG 0.527904 tig0006787:-20296 None:intergenic
GGCCCTATTCATCCCATCAA+CGG 0.536262 tig0006787:-20076 None:intergenic
GACTCAGATCAACCAACTAC+TGG 0.537057 tig0006787:+19978 Msa1344020:CDS
AGAGCTGAGCGACTTGCGCA+AGG 0.537990 tig0006787:+20023 Msa1344020:CDS
GGGCTCGGATCAAAAGAATC+CGG 0.538178 tig0006787:-20361 None:intergenic
TGGCCACCCCAATGTTGATA+CGG 0.542985 tig0006787:+19852 Msa1344020:CDS
CTTTCTCGAAGCGCCGTAGT+GGG 0.553366 tig0006787:+19740 Msa1344020:CDS
TGTTTGGTTTCAACAATATG+GGG 0.556331 tig0006787:+20316 Msa1344020:CDS
TTGTTGAAACCAAACAAATG+AGG 0.558095 tig0006787:-20309 None:intergenic
GGAGGTGGATATGGACCCTC+CGG 0.560213 tig0006787:+20342 Msa1344020:CDS
CTTCAACCATGTCGAGTGGA+AGG 0.562158 tig0006787:+19653 None:intergenic
AACGAAAATACCTTCTCCCC+AGG 0.564049 tig0006787:-19829 None:intergenic
GCTGGAAACATCTGAGCTTG+TGG 0.568464 tig0006787:-20258 None:intergenic
ACTTTCTCGAAGCGCCGTAG+TGG 0.571963 tig0006787:+19739 Msa1344020:CDS
AGTGAGCTTTGCACCCTCTG+TGG 0.587031 tig0006787:+19778 Msa1344020:CDS
GGATTTGGTTGATGGTGGAG+AGG 0.589428 tig0006787:-20234 None:intergenic
AGCAACATCTGCACCACAGA+GGG 0.595144 tig0006787:-19791 None:intergenic
TGCGCTTCAACCATGTCGAG+TGG 0.601726 tig0006787:+19649 None:intergenic
TGGTTTGAGTAGGAGCACCC+TGG 0.605264 tig0006787:-20173 None:intergenic
GTTTGGTTTCAACAATATGG+GGG 0.607401 tig0006787:+20317 Msa1344020:CDS
CGAGTCCCGCCCCAAAACAA+TGG 0.608244 tig0006787:+19895 Msa1344020:CDS
CTTTCTTGAAGAGCCCACTA+CGG 0.610979 tig0006787:-19753 None:intergenic
ATGGTGGAGAGGAATGTTCG+AGG 0.612109 tig0006787:-20223 None:intergenic
GCTGATAGGCTTGTAATCCA+GGG 0.636302 tig0006787:+20156 Msa1344020:CDS
TTTGGTTTCAACAATATGGG+GGG 0.638238 tig0006787:+20318 Msa1344020:CDS
TGGTACCATGCAATTCATTG+AGG 0.638950 tig0006787:+19915 Msa1344020:CDS
TGGTGGAGAGGAATGTTCGA+GGG 0.641320 tig0006787:-20222 None:intergenic
GGAAACATCTGAGCTTGTGG+AGG 0.645017 tig0006787:-20255 None:intergenic
CTCGGATCAAAAGAATCCGG+AGG 0.655674 tig0006787:-20358 None:intergenic
TGACCGTATCAACATTGGGG+TGG 0.665619 tig0006787:-19855 None:intergenic
TCGGATCAAAAGAATCCGGA+GGG 0.678771 tig0006787:-20357 None:intergenic
ATGAGCCTCAATGAATTGCA+TGG 0.679678 tig0006787:-19920 None:intergenic
TCGAGTGGAAGGAAAAGCCG+AGG 0.691796 tig0006787:+19664 Msa1344020:CDS
CTATGACCGTATCAACATTG+GGG 0.709949 tig0006787:-19858 None:intergenic
GAGCAACATCTGCACCACAG+AGG 0.729838 tig0006787:-19792 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTCATCTCAATCTTT+TGG - tig0006787:19693-19712 None:intergenic 20.0%
!! CTTCTTGAATAATTCAAGTT+GGG - tig0006787:20100-20119 None:intergenic 25.0%
!!! ATTCAGTTTTTTGTTGGAAA+CGG + tig0006787:20195-20214 Msa1344020:CDS 25.0%
!! TTTGTTTGGTTTCAACAATA+TGG + tig0006787:20314-20333 Msa1344020:CDS 25.0%
!! TTGTTTGGTTTCAACAATAT+GGG + tig0006787:20315-20334 Msa1344020:CDS 25.0%
CCTTCTTGAATAATTCAAGT+TGG - tig0006787:20101-20120 None:intergenic 30.0%
CCAACTTGAATTATTCAAGA+AGG + tig0006787:20098-20117 Msa1344020:CDS 30.0%
TGAATTATTCAAGAAGGCTT+TGG + tig0006787:20104-20123 Msa1344020:CDS 30.0%
AAAAACTGAATGGTTTGAGT+AGG - tig0006787:20186-20205 None:intergenic 30.0%
!!! CAAACCATTCAGTTTTTTGT+TGG + tig0006787:20189-20208 Msa1344020:CDS 30.0%
GTTTCCAACAAAAAACTGAA+TGG - tig0006787:20196-20215 None:intergenic 30.0%
TTGTTGAAACCAAACAAATG+AGG - tig0006787:20312-20331 None:intergenic 30.0%
! TGTTTGGTTTCAACAATATG+GGG + tig0006787:20316-20335 Msa1344020:CDS 30.0%
TCTATGACCGTATCAACATT+GGG - tig0006787:19862-19881 None:intergenic 35.0%
ATCTATGACCGTATCAACAT+TGG - tig0006787:19863-19882 None:intergenic 35.0%
! TTGCATGGTACCATTGTTTT+GGG - tig0006787:19908-19927 None:intergenic 35.0%
! ATTGCATGGTACCATTGTTT+TGG - tig0006787:19909-19928 None:intergenic 35.0%
ACAAATGAGGTTGCAACATA+GGG - tig0006787:20299-20318 None:intergenic 35.0%
AACAAATGAGGTTGCAACAT+AGG - tig0006787:20300-20319 None:intergenic 35.0%
ATGTTGCAACCTCATTTGTT+TGG + tig0006787:20300-20319 Msa1344020:CDS 35.0%
! GTTTGGTTTCAACAATATGG+GGG + tig0006787:20317-20336 Msa1344020:CDS 35.0%
! TTTGGTTTCAACAATATGGG+GGG + tig0006787:20318-20337 Msa1344020:CDS 35.0%
CTATGACCGTATCAACATTG+GGG - tig0006787:19861-19880 None:intergenic 40.0%
!! TGCATGGTACCATTGTTTTG+GGG - tig0006787:19907-19926 None:intergenic 40.0%
TGGTACCATGCAATTCATTG+AGG + tig0006787:19915-19934 Msa1344020:CDS 40.0%
ATGAGCCTCAATGAATTGCA+TGG - tig0006787:19923-19942 None:intergenic 40.0%
!! GACCGAAACTCAATTTTGGT+GGG + tig0006787:20047-20066 Msa1344020:CDS 40.0%
AGCCCACCAAAATTGAGTTT+CGG - tig0006787:20052-20071 None:intergenic 40.0%
TTGTTGCTCATCATGCTGAT+AGG + tig0006787:20142-20161 Msa1344020:CDS 40.0%
! TCTCAATCTTTTGGCGACCT+CGG - tig0006787:19684-19703 None:intergenic 45.0%
! CACTTGCAAGTTGCTTTCGT+TGG - tig0006787:19719-19738 None:intergenic 45.0%
CTTTCTTGAAGAGCCCACTA+CGG - tig0006787:19756-19775 None:intergenic 45.0%
!! CTCTCGTTGTTTTCTCACCT+GGG + tig0006787:19812-19831 Msa1344020:CDS 45.0%
!! TCTCGTTGTTTTCTCACCTG+GGG + tig0006787:19813-19832 Msa1344020:CDS 45.0%
AACGAAAATACCTTCTCCCC+AGG - tig0006787:19832-19851 None:intergenic 45.0%
!!! GGGGAGAAGGTATTTTCGTT+TGG + tig0006787:19832-19851 Msa1344020:CDS 45.0%
!!! ATGGTACCATTGTTTTGGGG+CGG - tig0006787:19904-19923 None:intergenic 45.0%
GACTCAGATCAACCAACTAC+TGG + tig0006787:19978-19997 Msa1344020:CDS 45.0%
TCTTCTCGATGTCCAGTAGT+TGG - tig0006787:19993-20012 None:intergenic 45.0%
! AGGCGACCGAAACTCAATTT+TGG + tig0006787:20043-20062 Msa1344020:CDS 45.0%
! CGACCGAAACTCAATTTTGG+TGG + tig0006787:20046-20065 Msa1344020:CDS 45.0%
!! GAAACTCAATTTTGGTGGGC+TGG + tig0006787:20051-20070 Msa1344020:CDS 45.0%
! TCCCGTTGATGGGATGAATA+GGG + tig0006787:20074-20093 Msa1344020:CDS 45.0%
TGCTGATAGGCTTGTAATCC+AGG + tig0006787:20155-20174 Msa1344020:CDS 45.0%
GCTGATAGGCTTGTAATCCA+GGG + tig0006787:20156-20175 Msa1344020:CDS 45.0%
! CTTGTGGAGGATTTGGTTGA+TGG - tig0006787:20245-20264 None:intergenic 45.0%
ATCTGAGCTTGTGGAGGATT+TGG - tig0006787:20252-20271 None:intergenic 45.0%
!! GGGTTCTGAAAAAACTGTGC+TGG - tig0006787:20279-20298 None:intergenic 45.0%
AGCAACATCTGCACCACAGA+GGG - tig0006787:19794-19813 None:intergenic 50.0%
!! GCTCTCGTTGTTTTCTCACC+TGG + tig0006787:19811-19830 Msa1344020:CDS 50.0%
! TGTTTTCTCACCTGGGGAGA+AGG + tig0006787:19819-19838 Msa1344020:CDS 50.0%
TGGCCACCCCAATGTTGATA+CGG + tig0006787:19852-19871 Msa1344020:CDS 50.0%
TGACCGTATCAACATTGGGG+TGG - tig0006787:19858-19877 None:intergenic 50.0%
!!! TGGTACCATTGTTTTGGGGC+GGG - tig0006787:19903-19922 None:intergenic 50.0%
! AGTATTGAGCTCGCGCACAT+TGG - tig0006787:19953-19972 None:intergenic 50.0%
! GTCCCGTTGATGGGATGAAT+AGG + tig0006787:20073-20092 Msa1344020:CDS 50.0%
GCCCTATTCATCCCATCAAC+GGG - tig0006787:20078-20097 None:intergenic 50.0%
GGCCCTATTCATCCCATCAA+CGG - tig0006787:20079-20098 None:intergenic 50.0%
TGGTGGAGAGGAATGTTCGA+GGG - tig0006787:20225-20244 None:intergenic 50.0%
! ATGGTGGAGAGGAATGTTCG+AGG - tig0006787:20226-20245 None:intergenic 50.0%
!! GGATTTGGTTGATGGTGGAG+AGG - tig0006787:20237-20256 None:intergenic 50.0%
!! GTGGAGGATTTGGTTGATGG+TGG - tig0006787:20242-20261 None:intergenic 50.0%
GGAAACATCTGAGCTTGTGG+AGG - tig0006787:20258-20277 None:intergenic 50.0%
GCTGGAAACATCTGAGCTTG+TGG - tig0006787:20261-20280 None:intergenic 50.0%
GGTTTCAACAATATGGGGGG+AGG + tig0006787:20321-20340 Msa1344020:CDS 50.0%
TTCAACAATATGGGGGGAGG+AGG + tig0006787:20324-20343 Msa1344020:CDS 50.0%
TCGAGTGGAAGGAAAAGCCG+AGG + tig0006787:19664-19683 Msa1344020:CDS 55.0%
!! ACTTTCTCGAAGCGCCGTAG+TGG + tig0006787:19739-19758 Msa1344020:CDS 55.0%
!! CTTTCTCGAAGCGCCGTAGT+GGG + tig0006787:19740-19759 Msa1344020:CDS 55.0%
! ACAGAGGGTGCAAAGCTCAC+TGG - tig0006787:19779-19798 None:intergenic 55.0%
AGTGAGCTTTGCACCCTCTG+TGG + tig0006787:19778-19797 Msa1344020:CDS 55.0%
GAGCAACATCTGCACCACAG+AGG - tig0006787:19795-19814 None:intergenic 55.0%
!! TGGTTTGAGTAGGAGCACCC+TGG - tig0006787:20176-20195 None:intergenic 55.0%
AACAATATGGGGGGAGGAGG+TGG + tig0006787:20327-20346 Msa1344020:CDS 55.0%
CGAGTCCCGCCCCAAAACAA+TGG + tig0006787:19895-19914 Msa1344020:CDS 60.0%
AGAGCTGAGCGACTTGCGCA+AGG + tig0006787:20023-20042 Msa1344020:CDS 60.0%
ATGGGGGGAGGAGGTGGATA+TGG + tig0006787:20333-20352 Msa1344020:CDS 60.0%
GGAGGTGGATATGGACCCTC+CGG + tig0006787:20342-20361 Msa1344020:CDS 60.0%
!! TGGTGGGCTGGTCCCGTTGA+TGG + tig0006787:20063-20082 Msa1344020:CDS 65.0%
!! GGTGGGCTGGTCCCGTTGAT+GGG + tig0006787:20064-20083 Msa1344020:CDS 65.0%
Chromosome Type Strat End Strand Name
tig0006787 gene 19661 20374 19661 ID=Msa1344020;Name=Msa1344020
tig0006787 mRNA 19661 20374 19661 ID=Msa1344020-mRNA-1;Parent=Msa1344020;Name=Msa1344020-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|-1|0|1|-1|1|1|0|237
tig0006787 exon 19661 20374 19661 ID=Msa1344020-mRNA-1:exon:4352;Parent=Msa1344020-mRNA-1
tig0006787 CDS 19661 20374 19661 ID=Msa1344020-mRNA-1:cds;Parent=Msa1344020-mRNA-1
Gene Sequence

>Msa1344020

ATGTCGAGTGGAAGGAAAAGCCGAGGTCGCCAAAAGATTGAGATGAAAAAAATGACCAACGAAAGCAACTTGCAAGTGACTTTCTCGAAGCGCCGTAGTGGGCTCTTCAAGAAAGCCAGTGAGCTTTGCACCCTCTGTGGTGCAGATGTTGCTCTCGTTGTTTTCTCACCTGGGGAGAAGGTATTTTCGTTTGGCCACCCCAATGTTGATACGGTCATAGATCGTTATCTCTCTCGAGTCCCGCCCCAAAACAATGGTACCATGCAATTCATTGAGGCTCATCGCAGCGCCAATGTGCGCGAGCTCAATACTCAGCTGACTCAGATCAACCAACTACTGGACATCGAGAAGAAACGTGCTGAAGAGCTGAGCGACTTGCGCAAGGCGACCGAAACTCAATTTTGGTGGGCTGGTCCCGTTGATGGGATGAATAGGGCCCAACTTGAATTATTCAAGAAGGCTTTGGATGAGCTTAAGAAACTTGTTGCTCATCATGCTGATAGGCTTGTAATCCAGGGTGCTCCTACTCAAACCATTCAGTTTTTTGTTGGAAACGGTTCACCCTCGAACATTCCTCTCCACCATCAACCAAATCCTCCACAAGCTCAGATGTTTCCAGCACAGTTTTTTCAGAACCCTATGTTGCAACCTCATTTGTTTGGTTTCAACAATATGGGGGGAGGAGGTGGATATGGACCCTCCGGATTCTTTTGA
Protein sequence

>Msa1344020

MSSGRKSRGRQKIEMKKMTNESNLQVTFSKRRSGLFKKASELCTLCGADVALVVFSPGEKVFSFGHPNVDTVIDRYLSRVPPQNNGTMQFIEAHRSANVRELNTQLTQINQLLDIEKKRAEELSDLRKATETQFWWAGPVDGMNRAQLELFKKALDELKKLVAHHADRLVIQGAPTQTIQFFVGNGSPSNIPLHHQPNPPQAQMFPAQFFQNPMLQPHLFGFNNMGGGGGYGPSGFF*