AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1344040

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1344040 MtrunA17_Chr8g0355091 92.405 237 18 0 1 237 1 237 4.29e-164 452
Msa1344040 MtrunA17_Chr1g0206701 95.982 224 9 0 1 224 1 224 5.84e-162 447
Msa1344040 MtrunA17_Chr1g0206721 90.868 219 20 0 1 219 1 219 3.11e-150 417
Msa1344040 MtrunA17_Chr2g0292791 88.608 237 27 0 1 237 1 237 8.54e-149 414
Msa1344040 MtrunA17_Chr1g0149391 89.451 237 25 0 1 237 1 237 9.96e-147 409
Msa1344040 MtrunA17_Chr3g0099421 85.388 219 32 0 1 219 26 244 2.90e-141 395
Msa1344040 MtrunA17_Chr1g0206691 85.000 220 33 0 18 237 1 220 5.66e-139 388
Msa1344040 MtrunA17_Chr3g0099411 80.365 219 24 1 1 219 1 200 1.53e-124 352
Msa1344040 MtrunA17_Chr2g0300441 71.730 237 66 1 1 237 1 236 2.08e-121 345
Msa1344040 MtrunA17_Chr3g0089141 72.650 234 46 3 1 224 1 226 2.87e-117 334
Msa1344040 MtrunA17_Chr1g0208561 72.650 234 46 3 1 224 1 226 3.23e-116 331
Msa1344040 MtrunA17_Chr1g0206991 86.264 182 25 0 1 182 1 182 8.99e-116 328
Msa1344040 MtrunA17_Chr5g0422941 65.401 237 82 0 1 237 1 237 9.59e-115 328
Msa1344040 MtrunA17_Chr2g0325971 72.222 234 47 3 1 224 1 226 1.03e-114 327
Msa1344040 MtrunA17_Chr1g0188671 68.889 225 70 0 1 225 39 263 3.12e-114 328
Msa1344040 MtrunA17_Chr2g0317451 65.254 236 82 0 1 236 1 236 6.01e-113 323
Msa1344040 MtrunA17_Chr1g0187361 69.196 224 69 0 1 224 1 224 8.35e-113 323
Msa1344040 MtrunA17_Chr2g0317481 65.254 236 82 0 1 236 1 236 1.54e-112 322
Msa1344040 MtrunA17_Chr1g0208581 74.074 216 48 1 1 216 1 208 2.03e-111 319
Msa1344040 MtrunA17_Chr5g0422421 67.857 224 72 0 1 224 1 224 1.90e-110 317
Msa1344040 MtrunA17_Chr5g0419601 67.932 237 76 0 1 237 1 237 4.52e-110 316
Msa1344040 MtrunA17_Chr7g0238991 65.471 223 75 2 16 237 27 248 3.19e-99 289
Msa1344040 MtrunA17_Chr2g0300421 65.644 163 55 1 1 162 1 163 2.87e-68 207
Msa1344040 MtrunA17_Chr3g0085241 51.323 189 82 1 3 191 35 213 2.43e-65 202
Msa1344040 MtrunA17_Chr3g0089151 75.194 129 32 0 1 129 1 129 1.67e-64 196
Msa1344040 MtrunA17_Chr3g0119901 52.222 180 85 1 7 186 7 185 3.66e-64 198
Msa1344040 MtrunA17_Chr3g0111931 67.647 102 33 0 21 122 2 103 1.06e-45 148
Msa1344040 MtrunA17_Chr2g0333981 40.351 171 92 2 5 172 8 171 2.51e-41 139
Msa1344040 MtrunA17_Chr8g0379021 42.169 166 86 2 5 167 8 166 4.99e-41 138
Msa1344040 MtrunA17_Chr4g0018951 45.806 155 72 3 5 159 8 150 4.07e-36 125
Msa1344040 MtrunA17_Chr1g0187351 81.818 66 12 0 18 83 1 66 4.00e-33 114
Msa1344040 MtrunA17_Chr4g0071601 39.227 181 90 4 5 172 8 181 4.55e-32 115
Msa1344040 MtrunA17_Chr3g0111841 86.441 59 8 0 15 73 2 60 9.91e-31 108
Msa1344040 MtrunA17_Chr3g0111831 72.131 61 17 0 16 76 11 71 3.87e-25 94.7
Msa1344040 MtrunA17_Chr1g0175601 45.946 111 57 2 9 118 2 110 2.98e-24 95.1
Msa1344040 MtrunA17_Chr1g0169761 60.870 69 27 0 9 77 2 70 1.41e-23 93.6
Msa1344040 MtrunA17_Chr8g0376821 60.870 69 27 0 9 77 2 70 3.81e-23 92.4
Msa1344040 MtrunA17_Chr4g0074101 40.517 116 54 3 9 109 2 117 8.52e-23 92.0
Msa1344040 MtrunA17_Chr8g0357771 42.063 126 68 2 9 131 2 125 1.72e-22 90.5
Msa1344040 MtrunA17_Chr1g0175611 45.545 101 53 1 9 109 2 100 2.14e-22 90.1
Msa1344040 MtrunA17_Chr1g0180591 45.536 112 56 3 9 118 2 110 2.16e-22 90.5
Msa1344040 MtrunA17_Chr8g0356071 40.171 117 63 2 9 125 2 111 2.96e-21 87.0
Msa1344040 MtrunA17_Chr4g0052061 41.509 106 60 1 9 114 2 105 2.46e-20 84.3
Msa1344040 MtrunA17_Chr4g0049901 33.333 165 87 3 10 153 29 191 3.41e-19 83.2
Msa1344040 MtrunA17_Chr3g0077501 52.941 68 32 0 9 76 2 69 4.90e-19 82.4
Msa1344040 MtrunA17_Chr3g0097101 42.453 106 51 1 3 108 11 106 9.17e-19 82.4
Msa1344040 MtrunA17_Chr4g0052081 41.509 106 61 1 9 113 2 107 1.93e-18 79.7
Msa1344040 MtrunA17_Chr4g0057151 50.685 73 36 0 10 82 3 75 3.98e-18 79.7
Msa1344040 MtrunA17_Chr5g0427401 51.471 68 33 0 9 76 2 69 1.25e-17 79.0
Msa1344040 MtrunA17_Chr6g0474371 49.275 69 34 1 9 76 2 70 1.71e-17 77.8
Msa1344040 MtrunA17_Chr2g0284911 30.270 185 100 4 9 167 17 198 2.26e-17 78.6
Msa1344040 MtrunA17_Chr3g0134451 33.333 171 90 6 9 162 2 165 2.46e-17 79.3
Msa1344040 MtrunA17_Chr8g0351051 51.471 68 33 0 9 76 2 69 2.71e-17 78.6
Msa1344040 MtrunA17_Chr8g0351041 47.436 78 41 0 10 87 3 80 3.15e-17 76.3
Msa1344040 MtrunA17_Chr8g0380021 51.471 68 33 0 9 76 18 85 4.05e-17 77.8
Msa1344040 MtrunA17_Chr5g0412271 29.384 211 130 6 9 201 2 211 5.27e-17 77.0
Msa1344040 MtrunA17_Chr2g0279821 48.529 68 35 0 9 76 2 69 1.02e-16 76.6
Msa1344040 MtrunA17_Chr4g0061691 47.826 69 35 1 9 76 2 70 1.08e-16 76.3
Msa1344040 MtrunA17_Chr5g0412461 28.169 213 129 6 9 201 2 210 1.16e-16 76.3
Msa1344040 MtrunA17_Chr1g0204111 50.000 68 34 0 9 76 18 85 1.44e-16 76.6
Msa1344040 MtrunA17_Chr8g0345001 32.911 158 93 3 8 159 17 167 1.65e-16 74.7
Msa1344040 MtrunA17_Chr8g0351031 47.436 78 41 0 10 87 3 80 1.71e-16 75.9
Msa1344040 MtrunA17_Chr7g0246431 38.182 110 66 1 10 119 3 110 1.90e-16 75.5
Msa1344040 MtrunA17_Chr4g0020221 51.471 68 33 0 9 76 2 69 5.63e-16 74.7
Msa1344040 MtrunA17_Chr4g0049541 47.059 68 36 0 9 76 2 69 7.23e-16 73.9
Msa1344040 MtrunA17_Chr6g0455511 49.275 69 34 1 9 76 2 70 9.40e-16 74.3
Msa1344040 MtrunA17_Chr8g0366231 40.964 83 46 1 9 91 2 81 1.05e-15 73.9
Msa1344040 MtrunA17_Chr7g0220111 49.275 69 34 1 9 76 2 70 1.09e-15 73.9
Msa1344040 MtrunA17_Chr7g0220121 25.822 213 144 5 9 207 2 214 1.72e-15 73.6
Msa1344040 MtrunA17_Chr5g0404951 50.000 70 33 1 9 76 2 71 1.85e-15 73.2
Msa1344040 MtrunA17_Chr5g0411691 48.529 68 35 0 9 76 2 69 2.02e-15 73.2
Msa1344040 MtrunA17_Chr1g0173161 52.459 61 29 0 9 69 2 62 2.17e-15 69.3
Msa1344040 MtrunA17_Chr5g0420081 45.070 71 36 1 9 79 2 69 2.71e-15 72.8
Msa1344040 MtrunA17_Chr5g0425191 56.604 53 23 0 9 61 2 54 3.18e-15 69.3
Msa1344040 MtrunA17_Chr2g0308251 47.826 69 36 0 9 77 2 70 3.99e-15 68.6
Msa1344040 MtrunA17_Chr3g0093131 33.566 143 78 4 26 159 36 170 6.06e-15 70.9
Msa1344040 MtrunA17_Chr5g0420091 47.826 69 35 1 9 76 2 70 7.26e-15 71.2
Msa1344040 MtrunA17_Chr4g0044071 52.632 57 27 0 9 65 2 58 8.81e-15 68.6
Msa1344040 MtrunA17_Chr8g0377561 53.571 56 26 0 9 64 2 57 1.51e-14 67.4
Msa1344040 MtrunA17_Chr3g0122251 41.237 97 54 1 9 105 2 95 1.85e-14 70.5
Msa1344040 MtrunA17_Chr1g0164791 47.143 70 35 1 9 76 2 71 2.68e-14 69.7
Msa1344040 MtrunA17_Chr3g0125241 44.286 70 37 1 9 76 27 96 2.73e-14 69.3
Msa1344040 MtrunA17_Chr1g0159661 46.970 66 34 1 9 74 2 66 2.78e-14 68.9
Msa1344040 MtrunA17_Chr4g0061671 50.877 57 28 0 9 65 2 58 3.40e-14 68.6
Msa1344040 MtrunA17_Chr7g0246381 52.632 57 27 0 9 65 2 58 5.53e-14 65.1
Msa1344040 MtrunA17_Chr5g0427921 49.123 57 29 0 9 65 2 58 7.22e-14 64.3
Msa1344040 MtrunA17_Chr3g0142191 47.619 63 33 0 9 71 2 64 1.35e-13 67.8
Msa1344040 MtrunA17_Chr4g0025531 32.278 158 95 3 5 162 5 150 1.02e-12 65.5
Msa1344040 MtrunA17_Chr4g0060841 26.738 187 115 7 9 183 2 178 2.41e-12 65.5
Msa1344040 MtrunA17_Chr5g0417661 42.029 69 34 1 9 77 57 119 6.50e-12 61.2
Msa1344040 MtrunA17_Chr4g0018421 40.000 70 41 1 9 77 2 71 1.09e-11 62.0
Msa1344040 MtrunA17_Chr2g0302091 32.075 159 80 7 7 155 36 176 2.06e-11 61.2
Msa1344040 MtrunA17_Chr1g0166611 34.513 113 64 2 20 132 17 119 5.43e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1344040 AT5G60440.1 53.723 188 80 3 5 189 3 186 7.80e-61 193
Msa1344040 AT2G24840.1 49.080 163 72 4 6 162 60 217 2.70e-43 147
Msa1344040 AT1G65360.1 38.667 225 123 6 5 223 3 218 5.14e-40 137
Msa1344040 AT1G01530.1 40.000 210 103 4 4 192 2 209 1.00e-39 137
Msa1344040 AT4G36590.1 45.732 164 79 4 5 160 3 164 1.93e-38 134
Msa1344040 AT2G34440.1 45.299 117 55 2 9 121 2 113 6.62e-27 102
Msa1344040 AT3G66656.1 41.985 131 71 2 9 134 2 132 7.93e-26 99.8
Msa1344040 AT3G04100.1 31.579 152 100 2 2 149 7 158 1.04e-24 97.4
Msa1344040 AT1G72350.1 35.374 147 62 3 9 155 43 156 7.75e-23 93.2
Msa1344040 AT1G28460.1 31.429 140 93 1 5 141 4 143 1.32e-19 83.6
Msa1344040 AT4G22950.2 49.351 77 39 0 10 86 3 79 3.25e-19 82.0
Msa1344040 AT4G18960.1 28.689 244 136 8 5 226 15 242 4.14e-19 83.6
Msa1344040 AT4G09960.2 46.512 86 45 1 9 93 2 87 4.26e-19 82.8
Msa1344040 AT4G09960.1 46.512 86 45 1 9 93 2 87 4.84e-19 83.2
Msa1344040 AT4G09960.6 46.512 86 45 1 9 93 3 88 4.97e-19 83.2
Msa1344040 AT4G09960.5 46.512 86 45 1 9 93 12 97 6.87e-19 82.8
Msa1344040 AT4G09960.3 46.512 86 45 1 9 93 28 113 9.03e-19 82.8
Msa1344040 AT2G45650.1 52.941 68 32 0 9 76 2 69 1.18e-18 82.4
Msa1344040 AT2G45660.2 52.941 68 32 0 10 77 3 70 1.32e-18 80.1
Msa1344040 AT4G22950.3 50.000 76 38 0 10 85 3 78 1.38e-18 81.6
Msa1344040 AT4G22950.1 50.000 76 38 0 10 85 3 78 1.38e-18 81.6
Msa1344040 AT1G29962.1 29.070 172 115 4 5 169 4 175 2.68e-18 80.1
Msa1344040 AT4G09960.4 46.512 86 45 1 9 93 97 182 3.11e-18 82.4
Msa1344040 AT2G45660.1 52.941 68 32 0 10 77 3 70 3.55e-18 80.5
Msa1344040 AT2G22540.3 51.471 68 33 0 9 76 2 69 1.90e-17 79.0
Msa1344040 AT2G22540.1 51.471 68 33 0 9 76 2 69 1.90e-17 79.0
Msa1344040 AT5G51870.2 53.731 67 31 0 10 76 3 69 2.43e-17 77.0
Msa1344040 AT5G51870.1 53.731 67 31 0 10 76 3 69 3.00e-17 77.8
Msa1344040 AT4G24540.1 36.567 134 73 4 9 132 2 133 4.26e-17 77.8
Msa1344040 AT3G57230.2 47.059 68 36 0 9 76 2 69 4.26e-17 75.9
Msa1344040 AT2G42830.1 47.368 76 40 0 1 76 9 84 5.26e-17 77.8
Msa1344040 AT5G51870.5 50.000 72 36 0 5 76 21 92 5.97e-17 76.6
Msa1344040 AT2G42830.2 47.368 76 40 0 1 76 9 84 6.13e-17 77.8
Msa1344040 AT1G22130.1 36.441 118 73 2 9 125 2 118 6.62e-17 79.0
Msa1344040 AT5G51870.4 53.731 67 31 0 10 76 3 69 6.77e-17 77.0
Msa1344040 AT3G58780.1 50.704 71 35 0 6 76 14 84 7.06e-17 77.4
Msa1344040 AT3G58780.5 50.704 71 35 0 6 76 20 90 7.19e-17 77.8
Msa1344040 AT5G51870.3 53.731 67 31 0 10 76 13 79 7.95e-17 77.0
Msa1344040 AT3G61120.1 51.471 68 33 0 9 76 2 69 8.57e-17 77.4
Msa1344040 AT5G10140.2 50.725 69 33 1 9 76 2 70 9.03e-17 75.5
Msa1344040 AT3G57390.3 50.000 68 34 0 9 76 2 69 9.53e-17 76.6
Msa1344040 AT5G62165.14 49.254 67 34 0 10 76 3 69 9.71e-17 73.9
Msa1344040 AT4G37940.4 48.529 68 35 0 9 76 2 69 1.02e-16 76.6
Msa1344040 AT4G37940.1 48.529 68 35 0 9 76 2 69 1.13e-16 76.6
Msa1344040 AT4G37940.3 48.529 68 35 0 9 76 2 69 1.25e-16 75.5
Msa1344040 AT1G77980.1 38.095 105 64 1 9 112 2 106 1.30e-16 78.2
Msa1344040 AT1G77950.3 47.368 76 38 2 9 83 2 76 1.32e-16 77.0
Msa1344040 AT1G77950.2 47.368 76 38 2 9 83 2 76 1.32e-16 77.0
Msa1344040 AT1G77950.1 47.368 76 38 2 9 83 2 76 1.32e-16 77.0
Msa1344040 AT1G77950.4 47.368 76 38 2 9 83 2 76 1.32e-16 77.0
Msa1344040 AT5G10140.4 50.725 69 33 1 9 76 2 70 1.35e-16 75.5
Msa1344040 AT3G58780.4 50.704 71 35 0 6 76 14 84 1.40e-16 77.4
Msa1344040 AT5G62165.6 49.254 67 34 0 10 76 3 69 1.61e-16 74.3
Msa1344040 AT5G62165.9 49.254 67 34 0 10 76 3 69 1.61e-16 74.3
Msa1344040 AT5G62165.7 49.254 67 34 0 10 76 3 69 1.61e-16 74.3
Msa1344040 AT5G62165.8 49.254 67 34 0 10 76 3 69 1.61e-16 74.3
Msa1344040 AT5G62165.13 49.254 67 34 0 10 76 3 69 1.61e-16 74.3
Msa1344040 AT5G10140.1 50.725 69 33 1 9 76 2 70 1.69e-16 75.5
Msa1344040 AT5G10140.3 50.725 69 33 1 9 76 2 70 1.76e-16 75.1
Msa1344040 AT3G57230.1 47.059 68 36 0 9 76 2 69 1.76e-16 76.3
Msa1344040 AT3G57230.4 47.059 68 36 0 9 76 2 69 1.76e-16 76.3
Msa1344040 AT5G62165.17 49.254 67 34 0 10 76 3 69 1.86e-16 74.3
Msa1344040 AT5G62165.12 49.254 67 34 0 10 76 3 69 1.86e-16 74.3
Msa1344040 AT5G62165.11 49.254 67 34 0 10 76 3 69 1.86e-16 74.3
Msa1344040 AT5G13790.2 43.011 93 44 1 9 101 2 85 2.15e-16 76.6
Msa1344040 AT3G57390.1 50.000 68 34 0 9 76 2 69 2.23e-16 76.3
Msa1344040 AT5G13790.1 51.471 68 33 0 9 76 2 69 2.98e-16 76.3
Msa1344040 AT4G11880.2 48.611 72 36 1 10 80 3 74 3.98e-16 73.9
Msa1344040 AT4G11880.3 48.611 72 36 1 10 80 3 74 3.98e-16 73.9
Msa1344040 AT1G69120.2 40.659 91 51 1 9 99 2 89 4.13e-16 75.1
Msa1344040 AT2G22630.1 47.059 68 36 0 9 76 2 69 4.13e-16 75.1
Msa1344040 AT2G22630.2 47.059 68 36 0 9 76 2 69 4.13e-16 75.1
Msa1344040 AT5G51860.2 52.239 67 32 0 10 76 3 69 5.61e-16 74.3
Msa1344040 AT1G28450.1 29.371 143 95 3 5 141 4 146 5.70e-16 73.9
Msa1344040 AT5G51860.1 52.239 67 32 0 10 76 3 69 6.72e-16 74.3
Msa1344040 AT5G62165.10 49.254 67 34 0 10 76 3 69 7.11e-16 73.9
Msa1344040 AT5G62165.4 49.254 67 34 0 10 76 3 69 7.11e-16 73.9
Msa1344040 AT5G60910.1 49.296 71 33 1 9 79 2 69 7.14e-16 74.7
Msa1344040 AT3G54340.1 29.487 156 86 3 9 162 2 135 7.36e-16 74.3
Msa1344040 AT5G62165.3 49.254 67 34 0 10 76 3 69 7.70e-16 73.9
Msa1344040 AT5G62165.1 49.254 67 34 0 10 76 3 69 7.70e-16 73.9
Msa1344040 AT5G62165.2 49.254 67 34 0 10 76 3 69 7.70e-16 73.9
Msa1344040 AT4G11880.4 48.611 72 36 1 10 80 3 74 9.66e-16 73.9
Msa1344040 AT4G11880.1 48.611 72 36 1 10 80 3 74 9.66e-16 73.9
Msa1344040 AT1G69120.1 40.659 91 51 1 9 99 2 89 9.89e-16 74.7
Msa1344040 AT1G26310.1 47.826 69 35 1 9 76 2 70 1.06e-15 74.3
Msa1344040 AT3G30260.1 46.377 69 36 1 9 76 2 70 1.35e-15 73.9
Msa1344040 AT5G23260.1 44.330 97 46 3 2 90 9 105 2.04e-15 73.9
Msa1344040 AT5G23260.4 44.330 97 46 3 2 90 9 105 2.17e-15 73.9
Msa1344040 AT5G20240.2 47.143 70 35 1 9 76 2 71 2.81e-15 71.2
Msa1344040 AT5G15800.1 49.275 69 34 1 9 76 2 70 2.91e-15 73.2
Msa1344040 AT5G23260.3 45.455 88 42 2 9 90 2 89 3.64e-15 72.8
Msa1344040 AT5G23260.2 45.455 88 42 2 9 90 2 89 4.11e-15 72.8
Msa1344040 AT2G22540.2 50.000 68 29 1 9 76 2 64 4.22e-15 72.4
Msa1344040 AT5G15800.2 49.275 69 34 1 9 76 2 70 4.91e-15 72.8
Msa1344040 AT5G20240.1 47.143 70 35 1 9 76 2 71 5.32e-15 71.6
Msa1344040 AT1G17310.1 51.899 79 36 1 8 86 47 123 6.76e-15 71.6
Msa1344040 AT5G65050.1 30.412 194 111 7 9 193 2 180 7.00e-15 70.9
Msa1344040 AT2G14210.1 46.377 69 36 1 9 76 2 70 8.17e-15 71.6
Msa1344040 AT1G17310.2 51.899 79 36 1 8 86 58 134 8.53e-15 71.6
Msa1344040 AT5G65050.5 27.979 193 120 8 9 193 2 183 9.10e-15 70.5
Msa1344040 AT2G14210.2 46.377 69 36 1 9 76 2 70 1.11e-14 71.2
Msa1344040 AT3G58780.2 53.333 60 28 0 6 65 14 73 1.90e-14 70.9
Msa1344040 AT3G02310.2 47.826 69 35 1 9 76 2 70 2.03e-14 70.1
Msa1344040 AT5G65050.2 46.377 69 36 1 9 76 2 70 2.28e-14 69.3
Msa1344040 AT1G24260.2 28.226 248 142 9 9 234 2 235 2.32e-14 70.9
Msa1344040 AT3G58780.3 53.333 60 28 0 6 65 14 73 2.50e-14 70.9
Msa1344040 AT1G24260.3 29.114 237 140 8 9 234 2 221 3.15e-14 70.1
Msa1344040 AT2G03710.3 53.571 56 26 0 9 64 2 57 3.94e-14 68.9
Msa1344040 AT5G65050.3 46.377 69 36 1 9 76 2 70 4.27e-14 68.9
Msa1344040 AT3G02310.1 47.826 69 35 1 9 76 2 70 4.99e-14 69.7
Msa1344040 AT2G03710.2 47.143 70 35 2 9 76 2 71 7.83e-14 69.3
Msa1344040 AT5G65060.3 46.377 69 36 1 9 76 2 70 8.21e-14 68.2
Msa1344040 AT2G03710.1 47.143 70 35 2 9 76 2 71 8.41e-14 69.3
Msa1344040 AT5G65060.2 46.377 69 36 1 9 76 2 70 8.59e-14 67.8
Msa1344040 AT1G47760.1 31.788 151 82 5 9 156 2 134 8.96e-14 67.8
Msa1344040 AT1G24260.1 53.571 56 26 0 9 64 2 57 1.00e-13 68.9
Msa1344040 AT5G65060.1 46.377 69 36 1 9 76 2 70 1.09e-13 67.8
Msa1344040 AT1G71692.1 44.286 70 38 1 9 77 2 71 1.33e-13 67.8
Msa1344040 AT5G65070.4 42.029 69 39 1 9 76 2 70 3.65e-13 65.5
Msa1344040 AT5G65070.1 42.029 69 39 1 9 76 2 70 6.14e-13 65.9
Msa1344040 AT5G65070.5 42.029 69 39 1 9 76 2 70 1.15e-12 65.5
Msa1344040 AT5G65070.2 42.029 69 39 1 9 76 2 70 1.27e-12 65.5
Msa1344040 AT1G18750.4 25.806 186 119 6 9 177 2 185 4.53e-12 65.1
Msa1344040 AT1G18750.1 25.806 186 119 6 9 177 2 185 5.33e-12 65.1
Msa1344040 AT5G65070.3 47.368 57 30 0 9 65 2 58 5.86e-12 63.5
Msa1344040 AT1G69540.1 32.727 110 66 3 9 117 2 104 1.76e-11 63.5
Msa1344040 AT4G37435.1 40.278 72 42 1 9 79 2 73 1.90e-11 61.6
Msa1344040 AT1G69540.2 32.727 110 66 3 9 117 2 104 1.98e-11 63.2
Msa1344040 AT1G18750.3 37.333 75 45 1 9 81 2 76 3.98e-11 62.4
Msa1344040 AT2G26320.1 40.000 70 40 1 9 76 18 87 4.27e-11 58.9
Msa1344040 AT5G65080.3 42.029 69 39 1 9 76 9 77 5.82e-11 60.1
Msa1344040 AT2G03060.3 39.286 84 48 3 9 90 2 84 6.97e-11 61.6
Msa1344040 AT2G03060.7 39.286 84 48 3 9 90 2 84 6.97e-11 61.6
Msa1344040 AT2G03060.1 39.286 84 48 3 9 90 2 84 6.97e-11 61.6
Msa1344040 AT2G03060.2 39.286 84 48 3 9 90 2 84 7.04e-11 61.6
Msa1344040 AT5G65080.2 43.548 62 35 0 1 62 1 62 8.38e-11 60.1

Find 53 sgRNAs with CRISPR-Local

Find 78 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTTGAGTTTGCGGAGGATT+TGG 0.289021 tig0006787:-32072 None:intergenic
TGGTGGGCTGGTCCCGTTGA+TGG 0.303436 tig0006787:+31886 Msa1344040:CDS
GATCAACCAGCTACTGGATA+TGG 0.309226 tig0006787:+31807 Msa1344040:CDS
ATTGCATGGTACCATTGTTT+TGG 0.337688 tig0006787:-31729 None:intergenic
ATGTTGCAACCTCACTTGTT+TGG 0.376512 tig0006787:+32123 Msa1344040:CDS
AAGGAGACTAAGAAACTTGT+TGG 0.377140 tig0006787:+31949 Msa1344040:CDS
TGCTGATAGGCTTGTAATCC+AGG 0.383576 tig0006787:+31978 Msa1344040:CDS
TTGTTGGACATCATGCTGAT+AGG 0.402994 tig0006787:+31965 Msa1344040:CDS
GGGCTCAGATCAAAAGAATC+TGG 0.407516 tig0006787:-32184 None:intergenic
CTTGTTTGGCTTCAACAATA+CGG 0.429938 tig0006787:+32137 Msa1344040:CDS
GTCCCGTTGATGGGATGAAT+AGG 0.432754 tig0006787:+31896 Msa1344040:CDS
GCGGAGGATTTGGTTGATGA+TGG 0.439291 tig0006787:-32062 None:intergenic
GGTGGGCTGGTCCCGTTGAT+GGG 0.452333 tig0006787:+31887 Msa1344040:CDS
TCCCGTTGATGGGATGAATA+GGG 0.453040 tig0006787:+31897 Msa1344040:CDS
TCTTCTCCATATCCAGTAGC+TGG 0.455839 tig0006787:-31813 None:intergenic
AGGCGACCGAGAGTCAGTTT+TGG 0.458130 tig0006787:+31866 Msa1344040:CDS
TTGTTTGGCTTCAACAATAC+GGG 0.463078 tig0006787:+32138 Msa1344040:CDS
GCCCTATTCATCCCATCAAC+GGG 0.481029 tig0006787:-31898 None:intergenic
AGTATTGAGCTCGCGCACAT+TGG 0.504609 tig0006787:-31773 None:intergenic
GTTGGAAACATTTGAGTTTG+CGG 0.508183 tig0006787:-32081 None:intergenic
GACTCAGATCAACCAGCTAC+TGG 0.508380 tig0006787:+31801 Msa1344040:CDS
GTCTATGACCGTATCAACAT+TGG 0.509296 tig0006787:-31683 None:intergenic
GCAGAGAGTGCAAAGCTCAC+TGG 0.516982 tig0006787:-31599 None:intergenic
GGCCCTATTCATCCCATCAA+CGG 0.536262 tig0006787:-31899 None:intergenic
AACAAGTGAGGTTGCAACAT+AGG 0.539918 tig0006787:-32120 None:intergenic
TCTATGACCGTATCAACATT+GGG 0.542196 tig0006787:-31682 None:intergenic
TGGCCAACCCAATGTTGATA+CGG 0.545005 tig0006787:+31675 Msa1344040:CDS
GCTCGCGCACATTGGCGCTA+CGG 0.552531 tig0006787:-31765 None:intergenic
CTTTCTCGAAGCGCCGTAGT+GGG 0.553366 tig0006787:+31563 Msa1344040:CDS
CTTCAACCATGTCGAGTGGA+AGG 0.555433 tig0006787:+31476 None:intergenic
GTGGGACTCGAGAGAGATAA+CGG 0.555728 tig0006787:-31705 None:intergenic
AGCCCACCAAAACTGACTCT+CGG 0.565176 tig0006787:-31872 None:intergenic
ACTTTCTCGAAGCGCCGTAG+TGG 0.571963 tig0006787:+31562 Msa1344040:CDS
AATGAAAATACCTTCTCCCC+AGG 0.587583 tig0006787:-31652 None:intergenic
AGAGCTGAGCAACTTGCGCA+AGG 0.589828 tig0006787:+31846 Msa1344040:CDS
TGACCGTATCAACATTGGGT+TGG 0.600758 tig0006787:-31678 None:intergenic
AGGTTTGAGTAGGAGCACCC+TGG 0.605264 tig0006787:-31996 None:intergenic
CTTTCTTGAAGAGCCCACTA+CGG 0.610979 tig0006787:-31576 None:intergenic
GGATTTGGTTGATGATGGAG+AGG 0.611456 tig0006787:-32057 None:intergenic
TGTTTGGCTTCAACAATACG+GGG 0.616084 tig0006787:+32139 Msa1344040:CDS
AGTGAGCTTTGCACTCTCTG+CGG 0.622154 tig0006787:+31601 Msa1344040:CDS
TGAGCTTCAACCATGTCGAG+TGG 0.629588 tig0006787:+31472 None:intergenic
CTCAGATCAAAAGAATCTGG+AGG 0.633945 tig0006787:-32181 None:intergenic
GCTGATAGGCTTGTAATCCA+GGG 0.636302 tig0006787:+31979 Msa1344040:CDS
TGGTACCATGCAATTCATTG+AGG 0.638950 tig0006787:+31738 Msa1344040:CDS
CGAGTCCCACCCCAAAACAA+TGG 0.639467 tig0006787:+31718 Msa1344040:CDS
GTGAGCCTCAATGAATTGCA+TGG 0.640763 tig0006787:-31743 None:intergenic
GGAAACATTTGAGTTTGCGG+AGG 0.647148 tig0006787:-32078 None:intergenic
TTGTTGAAGCCAAACAAGTG+AGG 0.651690 tig0006787:-32132 None:intergenic
TCAGATCAAAAGAATCTGGA+GGG 0.666536 tig0006787:-32180 None:intergenic
TTTGGCTTCAACAATACGGG+GGG 0.687957 tig0006787:+32141 Msa1344040:CDS
TCGAGTGGAAGGAAAAGCCG+AGG 0.691796 tig0006787:+31487 Msa1344040:CDS
GTTTGGCTTCAACAATACGG+GGG 0.701007 tig0006787:+32140 Msa1344040:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTCATCTCAATCTTT+TGG - tig0006787:31516-31535 None:intergenic 20.0%
!!! CTTTTTGAAAAATTCAAGTT+GGG - tig0006787:31923-31942 None:intergenic 20.0%
!!! CCTTTTTGAAAAATTCAAGT+TGG - tig0006787:31924-31943 None:intergenic 25.0%
!!! CCAACTTGAATTTTTCAAAA+AGG + tig0006787:31921-31940 Msa1344040:CDS 25.0%
!!! ATTTTTCAAAAAGGCTTTGA+AGG + tig0006787:31930-31949 Msa1344040:CDS 25.0%
! AAAAATTGAAAGGTTTGAGT+AGG - tig0006787:32009-32028 None:intergenic 25.0%
!!! ACTCAAACCTTTCAATTTTT+TGG + tig0006787:32009-32028 Msa1344040:CDS 25.0%
! ATTTCCACCAAAAAATTGAA+AGG - tig0006787:32019-32038 None:intergenic 25.0%
!!! TTTCAATTTTTTGGTGGAAA+TGG + tig0006787:32018-32037 Msa1344040:CDS 25.0%
!!! CAAACCTTTCAATTTTTTGG+TGG + tig0006787:32012-32031 Msa1344040:CDS 30.0%
TCTATGACCGTATCAACATT+GGG - tig0006787:31685-31704 None:intergenic 35.0%
! TTGCATGGTACCATTGTTTT+GGG - tig0006787:31731-31750 None:intergenic 35.0%
! ATTGCATGGTACCATTGTTT+TGG - tig0006787:31732-31751 None:intergenic 35.0%
AAGGAGACTAAGAAACTTGT+TGG + tig0006787:31949-31968 Msa1344040:CDS 35.0%
! GTTGGAAACATTTGAGTTTG+CGG - tig0006787:32084-32103 None:intergenic 35.0%
! GGATTCTGAAAAAACTGTGT+TGG - tig0006787:32102-32121 None:intergenic 35.0%
! CTTGTTTGGCTTCAACAATA+CGG + tig0006787:32137-32156 Msa1344040:CDS 35.0%
! TTGTTTGGCTTCAACAATAC+GGG + tig0006787:32138-32157 Msa1344040:CDS 35.0%
AATGAAAATACCTTCTCCCC+AGG - tig0006787:31655-31674 None:intergenic 40.0%
!!! GGGGAGAAGGTATTTTCATT+TGG + tig0006787:31655-31674 Msa1344040:CDS 40.0%
GTCTATGACCGTATCAACAT+TGG - tig0006787:31686-31705 None:intergenic 40.0%
!! TGCATGGTACCATTGTTTTG+GGG - tig0006787:31730-31749 None:intergenic 40.0%
TGGTACCATGCAATTCATTG+AGG + tig0006787:31738-31757 Msa1344040:CDS 40.0%
TTGTTGGACATCATGCTGAT+AGG + tig0006787:31965-31984 Msa1344040:CDS 40.0%
! ATTTGAGTTTGCGGAGGATT+TGG - tig0006787:32075-32094 None:intergenic 40.0%
AACAAGTGAGGTTGCAACAT+AGG - tig0006787:32123-32142 None:intergenic 40.0%
ATGTTGCAACCTCACTTGTT+TGG + tig0006787:32123-32142 Msa1344040:CDS 40.0%
TTGTTGAAGCCAAACAAGTG+AGG - tig0006787:32135-32154 None:intergenic 40.0%
! TGTTTGGCTTCAACAATACG+GGG + tig0006787:32139-32158 Msa1344040:CDS 40.0%
! TCTCAATCTTTTGGCGACCT+CGG - tig0006787:31507-31526 None:intergenic 45.0%
CTTTCTTGAAGAGCCCACTA+CGG - tig0006787:31579-31598 None:intergenic 45.0%
!! CTCTCGTTGTTTTCTCACCT+GGG + tig0006787:31635-31654 Msa1344040:CDS 45.0%
!! TCTCGTTGTTTTCTCACCTG+GGG + tig0006787:31636-31655 Msa1344040:CDS 45.0%
TGGCCAACCCAATGTTGATA+CGG + tig0006787:31675-31694 Msa1344040:CDS 45.0%
TGACCGTATCAACATTGGGT+TGG - tig0006787:31681-31700 None:intergenic 45.0%
!!! TGGTACCATTGTTTTGGGGT+GGG - tig0006787:31726-31745 None:intergenic 45.0%
!!! ATGGTACCATTGTTTTGGGG+TGG - tig0006787:31727-31746 None:intergenic 45.0%
GTGAGCCTCAATGAATTGCA+TGG - tig0006787:31746-31765 None:intergenic 45.0%
GATCAACCAGCTACTGGATA+TGG + tig0006787:31807-31826 Msa1344040:CDS 45.0%
TCTTCTCCATATCCAGTAGC+TGG - tig0006787:31816-31835 None:intergenic 45.0%
! TCCCGTTGATGGGATGAATA+GGG + tig0006787:31897-31916 Msa1344040:CDS 45.0%
TGCTGATAGGCTTGTAATCC+AGG + tig0006787:31978-31997 Msa1344040:CDS 45.0%
GCTGATAGGCTTGTAATCCA+GGG + tig0006787:31979-31998 Msa1344040:CDS 45.0%
!! GGATTTGGTTGATGATGGAG+AGG - tig0006787:32060-32079 None:intergenic 45.0%
! GGAAACATTTGAGTTTGCGG+AGG - tig0006787:32081-32100 None:intergenic 45.0%
! GTTTGGCTTCAACAATACGG+GGG + tig0006787:32140-32159 Msa1344040:CDS 45.0%
! TTTGGCTTCAACAATACGGG+GGG + tig0006787:32141-32160 Msa1344040:CDS 45.0%
AGTGAGCTTTGCACTCTCTG+CGG + tig0006787:31601-31620 Msa1344040:CDS 50.0%
!! GCTCTCGTTGTTTTCTCACC+TGG + tig0006787:31634-31653 Msa1344040:CDS 50.0%
! TGTTTTCTCACCTGGGGAGA+AGG + tig0006787:31642-31661 Msa1344040:CDS 50.0%
GTGGGACTCGAGAGAGATAA+CGG - tig0006787:31708-31727 None:intergenic 50.0%
! AGTATTGAGCTCGCGCACAT+TGG - tig0006787:31776-31795 None:intergenic 50.0%
GACTCAGATCAACCAGCTAC+TGG + tig0006787:31801-31820 Msa1344040:CDS 50.0%
!! GACCGAGAGTCAGTTTTGGT+GGG + tig0006787:31870-31889 Msa1344040:CDS 50.0%
! AGCCCACCAAAACTGACTCT+CGG - tig0006787:31875-31894 None:intergenic 50.0%
! GTCCCGTTGATGGGATGAAT+AGG + tig0006787:31896-31915 Msa1344040:CDS 50.0%
GCCCTATTCATCCCATCAAC+GGG - tig0006787:31901-31920 None:intergenic 50.0%
GGCCCTATTCATCCCATCAA+CGG - tig0006787:31902-31921 None:intergenic 50.0%
!! GCGGAGGATTTGGTTGATGA+TGG - tig0006787:32065-32084 None:intergenic 50.0%
TCGAGTGGAAGGAAAAGCCG+AGG + tig0006787:31487-31506 Msa1344040:CDS 55.0%
!! ACTTTCTCGAAGCGCCGTAG+TGG + tig0006787:31562-31581 Msa1344040:CDS 55.0%
!! CTTTCTCGAAGCGCCGTAGT+GGG + tig0006787:31563-31582 Msa1344040:CDS 55.0%
! GCAGAGAGTGCAAAGCTCAC+TGG - tig0006787:31602-31621 None:intergenic 55.0%
CGAGTCCCACCCCAAAACAA+TGG + tig0006787:31718-31737 Msa1344040:CDS 55.0%
AGAGCTGAGCAACTTGCGCA+AGG + tig0006787:31846-31865 Msa1344040:CDS 55.0%
! AGGCGACCGAGAGTCAGTTT+TGG + tig0006787:31866-31885 Msa1344040:CDS 55.0%
!! CGACCGAGAGTCAGTTTTGG+TGG + tig0006787:31869-31888 Msa1344040:CDS 55.0%
!! GAGAGTCAGTTTTGGTGGGC+TGG + tig0006787:31874-31893 Msa1344040:CDS 55.0%
!! AGGTTTGAGTAGGAGCACCC+TGG - tig0006787:31999-32018 None:intergenic 55.0%
GCTTCAACAATACGGGGGGA+GGG + tig0006787:32145-32164 Msa1344040:CDS 55.0%
CTTCAACAATACGGGGGGAG+GGG + tig0006787:32146-32165 Msa1344040:CDS 55.0%
TTCAACAATACGGGGGGAGG+GGG + tig0006787:32147-32166 Msa1344040:CDS 55.0%
GGCTTCAACAATACGGGGGG+AGG + tig0006787:32144-32163 Msa1344040:CDS 60.0%
GCTCGCGCACATTGGCGCTA+CGG - tig0006787:31768-31787 None:intergenic 65.0%
!! TGGTGGGCTGGTCCCGTTGA+TGG + tig0006787:31886-31905 Msa1344040:CDS 65.0%
!! GGTGGGCTGGTCCCGTTGAT+GGG + tig0006787:31887-31906 Msa1344040:CDS 65.0%
AACAATACGGGGGGAGGGGG+TGG + tig0006787:32150-32169 Msa1344040:CDS 65.0%
ACGGGGGGAGGGGGTGGATA+TGG + tig0006787:32156-32175 Msa1344040:CDS 70.0%
Chromosome Type Strat End Strand Name
tig0006787 gene 31484 32197 31484 ID=Msa1344040;Name=Msa1344040
tig0006787 mRNA 31484 32197 31484 ID=Msa1344040-mRNA-1;Parent=Msa1344040;Name=Msa1344040-mRNA-1;_AED=0.32;_eAED=0.32;_QI=0|-1|0|1|-1|1|1|0|237
tig0006787 exon 31484 32197 31484 ID=Msa1344040-mRNA-1:exon:4365;Parent=Msa1344040-mRNA-1
tig0006787 CDS 31484 32197 31484 ID=Msa1344040-mRNA-1:cds;Parent=Msa1344040-mRNA-1
Gene Sequence

>Msa1344040

ATGTCGAGTGGAAGGAAAAGCCGAGGTCGCCAAAAGATTGAGATGAAAAAAATGAGCAATGAGAGCAACTTGCAAGTGACTTTCTCGAAGCGCCGTAGTGGGCTCTTCAAGAAAGCCAGTGAGCTTTGCACTCTCTGCGGTGCAGATGTTGCTCTCGTTGTTTTCTCACCTGGGGAGAAGGTATTTTCATTTGGCCAACCCAATGTTGATACGGTCATAGACCGTTATCTCTCTCGAGTCCCACCCCAAAACAATGGTACCATGCAATTCATTGAGGCTCACCGTAGCGCCAATGTGCGCGAGCTCAATACTCAGCTGACTCAGATCAACCAGCTACTGGATATGGAGAAGAAACGTGCTGAAGAGCTGAGCAACTTGCGCAAGGCGACCGAGAGTCAGTTTTGGTGGGCTGGTCCCGTTGATGGGATGAATAGGGCCCAACTTGAATTTTTCAAAAAGGCTTTGAAGGAGACTAAGAAACTTGTTGGACATCATGCTGATAGGCTTGTAATCCAGGGTGCTCCTACTCAAACCTTTCAATTTTTTGGTGGAAATGGTTCATCTTCTAACATGCCTCTCCATCATCAACCAAATCCTCCGCAAACTCAAATGTTTCCAACACAGTTTTTTCAGAATCCTATGTTGCAACCTCACTTGTTTGGCTTCAACAATACGGGGGGAGGGGGTGGATATGGACCCTCCAGATTCTTTTGA
Protein sequence

>Msa1344040

MSSGRKSRGRQKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLCGADVALVVFSPGEKVFSFGQPNVDTVIDRYLSRVPPQNNGTMQFIEAHRSANVRELNTQLTQINQLLDMEKKRAEELSNLRKATESQFWWAGPVDGMNRAQLEFFKKALKETKKLVGHHADRLVIQGAPTQTFQFFGGNGSSSNMPLHHQPNPPQTQMFPTQFFQNPMLQPHLFGFNNTGGGGGYGPSRFF*