AlfalfaGEDB | Msa1344050

M. sativa cultivar zhongmu-4 / Msa1344050

KEGG: K04454|K09260
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006996 GO:0007275 GO:0008150 GO:0009553 GO:0009657 GO:0009658 GO:0009791 GO:0009888 GO:0009889 GO:0009909 GO:0009911 GO:0009960 GO:0009987 GO:0010154 GO:0010468 GO:0010556 GO:0010817 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048316 GO:0048518 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051049 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0071840 GO:0080090 GO:0140110 GO:1903506 GO:2000012 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141
PFAM: PF00319.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1344050	XP_024634594.1	94.444	126	7	0	1	126	1	126	1.50e-81	246

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1344050	sp\|Q9FKK2\|AGL62_ARATH	63.281	128	45	1	5	130	3	130	2.44e-51	167

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1344050	A0A072W118	93.077	130	9	0	1	130	1	130	7.32e-82	249

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TFs/TRs:

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Gene ID	Type	Classification
Msa1344050	TF	MADS-M-type

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa1344050	MtrunA17_Chr1g0206721	93.077	130	9	1	130	1	130	1.41e-85	249
Msa1344050	MtrunA17_Chr1g0206701	93.077	130	9	1	130	1	130	3.42e-85	248
Msa1344050	MtrunA17_Chr3g0099411	94.444	126	7	1	126	1	126	1.86e-84	246
Msa1344050	MtrunA17_Chr8g0355091	92.308	130	10	1	130	1	130	3.12e-84	246
Msa1344050	MtrunA17_Chr1g0149391	90.698	129	12	1	129	1	129	3.87e-83	243
Msa1344050	MtrunA17_Chr3g0099421	87.692	130	16	1	130	26	155	1.01e-80	238
Msa1344050	MtrunA17_Chr1g0206991	87.692	130	16	1	130	1	130	2.86e-80	234
Msa1344050	MtrunA17_Chr2g0292791	86.923	130	17	1	130	1	130	1.22e-78	231
Msa1344050	MtrunA17_Chr1g0208561	80.000	130	26	1	130	1	130	7.58e-73	216
Msa1344050	MtrunA17_Chr3g0089141	80.000	130	26	1	130	1	130	3.11e-72	215

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1344050	AT5G60440.1	63.281	128	45	1	5	130	3	130	2.48e-52	167
Msa1344050	AT4G36590.1	52.419	124	52	2	5	123	3	124	1.05e-36	125
Msa1344050	AT1G01530.1	56.604	106	44	1	4	109	2	105	3.55e-36	124
Msa1344050	AT2G24840.1	50.000	128	56	3	6	130	60	182	2.09e-35	123
Msa1344050	AT1G65360.1	48.246	114	57	1	5	118	3	114	1.37e-33	117
Msa1344050	AT2G34440.1	43.363	113	63	1	9	121	2	113	8.57e-28	100
Msa1344050	AT3G66656.1	42.017	119	65	1	9	123	2	120	1.09e-25	95.9
Msa1344050	AT1G72350.1	53.425	73	32	1	9	81	43	113	3.27e-22	87.8
Msa1344050	AT3G04100.1	33.913	115	73	1	2	113	7	121	9.29e-21	83.6
Msa1344050	AT4G22950.2	47.368	76	40	0	10	85	3	78	2.41e-19	79.3

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Find 23 sgRNAs with CRISPR-Local

Find 30 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AATGAAAATACCTTCTCTCC+AGG	0.563686	tig0006787:-36715	None:intergenic
ACTTTCTCGAAGCGCCGTAG+TGG	0.571963	tig0006787:+36625	Msa1344050:CDS
AGCGACATGTGCACCACAGA+TGG	0.558797	tig0006787:-36677	None:intergenic
AGTATTGAGCTCGCGCACGT+TGG	0.584782	tig0006787:-36836	None:intergenic
AGTGAGCTTTGTACCATCTG+TGG	0.652271	tig0006787:+36664	Msa1344050:CDS
ATCTATGACCGTATCCACAT+TGG	0.545676	tig0006787:-36746	None:intergenic
ATTGCATGGTACCATTGTTT+TGG	0.337688	tig0006787:-36792	None:intergenic
CGAGTCCCACCCCAAAACAA+TGG	0.639467	tig0006787:+36781	Msa1344050:CDS
CGTAGTGGGCTCTTCAAGAA+AGG	0.499918	tig0006787:+36640	Msa1344050:CDS
CTTCAACCATGTCGAGTGGA+AGG	0.562158	tig0006787:+36539	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATGAAAATACCTTCTCTCC+AGG	-	tig0006787:36718-36737	None:intergenic	35.0%
TCTATGACCGTATCCACATT+GGG	-	tig0006787:36748-36767	None:intergenic	40.0%
ATCTATGACCGTATCCACAT+TGG	-	tig0006787:36749-36768	None:intergenic	40.0%
GTGAGTCTCAATGAATTGCA+TGG	-	tig0006787:36809-36828	None:intergenic	40.0%
CTTTCTTGAAGAGCCCACTA+CGG	-	tig0006787:36642-36661	None:intergenic	45.0%
TTCATTTGGCCAACCCAATG+TGG	+	tig0006787:36732-36751	Msa1344050:CDS	45.0%
TGGCCAACCCAATGTGGATA+CGG	+	tig0006787:36738-36757	Msa1344050:CDS	50.0%
TGACCGTATCCACATTGGGT+TGG	-	tig0006787:36744-36763	None:intergenic	50.0%
GACTCAGATCAACCAGCTAC+TGG	+	tig0006787:36864-36883	Msa1344050:CDS	50.0%
TCTTCTCGTTGTCCAGTAGC+TGG	-	tig0006787:36879-36898	None:intergenic	50.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0006787	gene	36547	36939	36547	ID=Msa1344050;Name=Msa1344050
tig0006787	mRNA	36547	36939	36547	ID=Msa1344050-mRNA-1;Parent=Msa1344050;Name=Msa1344050-mRNA-1;_AED=0.35;_eAED=0.35;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|130
tig0006787	exon	36547	36939	36547	ID=Msa1344050-mRNA-1:exon:4366;Parent=Msa1344050-mRNA-1
tig0006787	CDS	36547	36939	36547	ID=Msa1344050-mRNA-1:cds;Parent=Msa1344050-mRNA-1

Gene Sequence

>Msa1344050

ATGTCGAGTGGAAGGAAAAGCCGAGGTCGCCAAAAGATTGAGATGAAAAAAATGAGCAATGAGAGCAACTTGCAAGTGACTTTCTCGAAGCGCCGTAGTGGGCTCTTCAAGAAAGGCAGTGAGCTTTGTACCATCTGTGGTGCACATGTCGCTCTCGTTGTTTTCTCACCTGGAGAGAAGGTATTTTCATTTGGCCAACCCAATGTGGATACGGTCATAGATCGTTATCTCTCTCGAGTCCCACCCCAAAACAATGGTACCATGCAATTCATTGAGACTCACCGTAGCGCCAACGTGCGCGAGCTCAATACTCAGTTGACTCAGATCAACCAGCTACTGGACAACGAGAAGAAACGTGCGGAAGAGCTGAGACACTTGCGCAAAGCTACATAG

Protein sequence

>Msa1344050

MSSGRKSRGRQKIEMKKMSNESNLQVTFSKRRSGLFKKGSELCTICGAHVALVVFSPGEKVFSFGQPNVDTVIDRYLSRVPPQNNGTMQFIETHRSANVRELNTQLTQINQLLDNEKKRAEELRHLRKAT*