Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1344100 | KEH43987.1 | 91.463 | 164 | 14 | 0 | 1 | 164 | 1 | 164 | 1.29e-106 | 313 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1344100 | sp|O48686|SNL3_ARATH | 42.581 | 155 | 76 | 4 | 13 | 157 | 11 | 162 | 1.24e-29 | 118 |
| Msa1344100 | sp|O48686|SNL3_ARATH | 55.882 | 68 | 30 | 0 | 96 | 163 | 15 | 82 | 9.64e-17 | 81.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1344100 | A0A072VQC1 | 91.463 | 164 | 14 | 0 | 1 | 164 | 1 | 164 | 6.16e-107 | 313 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1344100 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1344100 | MtrunA17_Chr1g0206771 | 91.463 | 164 | 14 | 0 | 1 | 164 | 1 | 164 | 1.19e-110 | 313 |
| Msa1344100 | MtrunA17_Chr1g0206781 | 49.600 | 125 | 44 | 1 | 6 | 130 | 1 | 106 | 4.62e-33 | 114 |
| Msa1344100 | MtrunA17_Chr1g0206781 | 61.905 | 84 | 31 | 1 | 94 | 177 | 10 | 92 | 2.95e-27 | 100 |
| Msa1344100 | MtrunA17_Chr3g0077911 | 45.806 | 155 | 74 | 3 | 13 | 160 | 5 | 156 | 1.86e-32 | 114 |
| Msa1344100 | MtrunA17_Chr3g0077911 | 46.835 | 79 | 38 | 2 | 96 | 173 | 9 | 84 | 2.15e-12 | 62.4 |
| Msa1344100 | MtrunA17_Chr5g0415031 | 44.737 | 152 | 77 | 2 | 13 | 157 | 40 | 191 | 6.42e-32 | 121 |
| Msa1344100 | MtrunA17_Chr5g0415031 | 51.351 | 74 | 36 | 0 | 96 | 169 | 44 | 117 | 6.83e-17 | 78.2 |
| Msa1344100 | MtrunA17_Chr3g0077861 | 47.742 | 155 | 71 | 4 | 13 | 160 | 5 | 156 | 6.51e-32 | 113 |
| Msa1344100 | MtrunA17_Chr1g0205821 | 38.372 | 172 | 98 | 2 | 5 | 168 | 2 | 173 | 2.80e-31 | 112 |
| Msa1344100 | MtrunA17_Chr1g0205821 | 40.964 | 83 | 49 | 0 | 92 | 174 | 10 | 92 | 3.01e-12 | 62.4 |
| Msa1344100 | MtrunA17_Chr3g0077891 | 40.476 | 168 | 75 | 3 | 17 | 165 | 9 | 170 | 1.87e-30 | 110 |
| Msa1344100 | MtrunA17_Chr3g0077891 | 51.389 | 72 | 34 | 1 | 9 | 79 | 92 | 163 | 6.59e-16 | 72.0 |
| Msa1344100 | MtrunA17_Chr3g0077941 | 41.104 | 163 | 84 | 2 | 13 | 163 | 5 | 167 | 9.34e-30 | 108 |
| Msa1344100 | MtrunA17_Chr8g0364231 | 41.509 | 159 | 86 | 2 | 6 | 157 | 32 | 190 | 1.29e-29 | 115 |
| Msa1344100 | MtrunA17_Chr8g0364231 | 55.405 | 74 | 33 | 0 | 96 | 169 | 43 | 116 | 4.28e-19 | 84.7 |
| Msa1344100 | MtrunA17_Chr1g0205831 | 37.500 | 160 | 91 | 2 | 16 | 174 | 2 | 153 | 2.40e-29 | 107 |
| Msa1344100 | MtrunA17_Chr6g0452001 | 42.208 | 154 | 78 | 3 | 13 | 157 | 60 | 211 | 6.49e-29 | 112 |
| Msa1344100 | MtrunA17_Chr6g0452001 | 50.667 | 75 | 37 | 0 | 96 | 170 | 64 | 138 | 3.81e-17 | 79.0 |
| Msa1344100 | MtrunA17_Chr4g0075861 | 41.139 | 158 | 79 | 2 | 15 | 163 | 88 | 240 | 2.93e-28 | 108 |
| Msa1344100 | MtrunA17_Chr4g0075861 | 42.667 | 150 | 78 | 3 | 17 | 163 | 13 | 157 | 3.62e-24 | 97.8 |
| Msa1344100 | MtrunA17_Chr4g0075861 | 41.176 | 85 | 47 | 1 | 91 | 175 | 8 | 89 | 5.33e-11 | 60.8 |
| Msa1344100 | MtrunA17_Chr4g0075971 | 40.506 | 158 | 80 | 2 | 15 | 163 | 88 | 240 | 2.95e-27 | 107 |
| Msa1344100 | MtrunA17_Chr4g0075971 | 42.857 | 154 | 76 | 3 | 15 | 163 | 11 | 157 | 6.76e-25 | 101 |
| Msa1344100 | MtrunA17_Chr4g0075971 | 43.038 | 79 | 42 | 1 | 91 | 169 | 8 | 83 | 1.98e-11 | 62.0 |
| Msa1344100 | MtrunA17_Chr3g0077881 | 40.854 | 164 | 84 | 4 | 13 | 163 | 5 | 168 | 6.01e-27 | 100 |
| Msa1344100 | MtrunA17_Chr3g0077881 | 45.783 | 83 | 44 | 1 | 96 | 177 | 9 | 91 | 8.81e-13 | 63.5 |
| Msa1344100 | MtrunA17_Chr6g0452021 | 41.333 | 150 | 83 | 1 | 13 | 157 | 40 | 189 | 2.47e-26 | 104 |
| Msa1344100 | MtrunA17_Chr1g0209201 | 44.961 | 129 | 64 | 3 | 19 | 145 | 19 | 142 | 8.27e-26 | 97.1 |
| Msa1344100 | MtrunA17_Chr1g0209201 | 50.685 | 73 | 35 | 1 | 92 | 164 | 13 | 84 | 1.97e-17 | 75.1 |
| Msa1344100 | MtrunA17_Chr1g0205861 | 50.617 | 81 | 40 | 0 | 1 | 81 | 1 | 81 | 1.06e-20 | 83.2 |
| Msa1344100 | MtrunA17_Chr1g0205861 | 38.462 | 104 | 59 | 1 | 92 | 195 | 13 | 111 | 3.03e-17 | 73.9 |
| Msa1344100 | MtrunA17_Chr7g0218891 | 36.129 | 155 | 90 | 3 | 17 | 162 | 100 | 254 | 1.30e-20 | 86.7 |
| Msa1344100 | MtrunA17_Chr7g0218891 | 33.516 | 182 | 109 | 5 | 1 | 173 | 1 | 179 | 9.17e-20 | 84.3 |
| Msa1344100 | MtrunA17_Chr7g0256011 | 48.193 | 83 | 43 | 0 | 1 | 83 | 1 | 83 | 1.79e-19 | 80.1 |
| Msa1344100 | MtrunA17_Chr1g0205811 | 52.055 | 73 | 35 | 0 | 16 | 88 | 14 | 86 | 1.25e-18 | 77.8 |
| Msa1344100 | MtrunA17_Chr1g0205811 | 44.792 | 96 | 50 | 1 | 95 | 187 | 14 | 109 | 1.36e-17 | 75.1 |
| Msa1344100 | MtrunA17_Chr8g0364021 | 48.611 | 72 | 37 | 0 | 9 | 80 | 37 | 108 | 2.20e-15 | 72.0 |
| Msa1344100 | MtrunA17_Chr8g0364021 | 50.746 | 67 | 33 | 0 | 96 | 162 | 45 | 111 | 1.81e-11 | 61.2 |
| Msa1344100 | MtrunA17_Chr1g0205801 | 43.836 | 73 | 41 | 0 | 16 | 88 | 12 | 84 | 5.84e-14 | 65.5 |
| Msa1344100 | MtrunA17_Chr1g0205801 | 45.000 | 80 | 44 | 0 | 95 | 174 | 12 | 91 | 1.30e-12 | 61.6 |
| Msa1344100 | MtrunA17_Chr2g0328701 | 41.584 | 101 | 56 | 1 | 69 | 169 | 3 | 100 | 6.52e-14 | 65.5 |
| Msa1344100 | MtrunA17_Chr2g0328701 | 40.777 | 103 | 53 | 3 | 15 | 114 | 28 | 125 | 7.87e-13 | 62.8 |
| Msa1344100 | MtrunA17_Chr7g0218911 | 49.180 | 61 | 31 | 0 | 20 | 80 | 2 | 62 | 8.54e-14 | 65.1 |
| Msa1344100 | MtrunA17_Chr3g0077811 | 46.479 | 71 | 37 | 1 | 93 | 162 | 11 | 81 | 2.64e-12 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1344100 | AT1G24190.3 | 42.581 | 155 | 76 | 4 | 13 | 157 | 11 | 162 | 1.09e-30 | 118 |
| Msa1344100 | AT1G24190.3 | 55.882 | 68 | 30 | 0 | 96 | 163 | 15 | 82 | 8.91e-18 | 81.3 |
| Msa1344100 | AT1G24190.1 | 42.581 | 155 | 76 | 4 | 13 | 157 | 11 | 162 | 1.26e-30 | 118 |
| Msa1344100 | AT1G24190.1 | 55.882 | 68 | 30 | 0 | 96 | 163 | 15 | 82 | 9.80e-18 | 81.3 |
| Msa1344100 | AT1G24190.2 | 42.581 | 155 | 76 | 4 | 13 | 157 | 11 | 162 | 1.28e-30 | 118 |
| Msa1344100 | AT1G24190.2 | 55.882 | 68 | 30 | 0 | 96 | 163 | 15 | 82 | 9.99e-18 | 81.3 |
| Msa1344100 | AT3G01320.1 | 42.384 | 151 | 81 | 2 | 13 | 157 | 54 | 204 | 2.79e-30 | 117 |
| Msa1344100 | AT3G01320.1 | 55.405 | 74 | 33 | 0 | 96 | 169 | 58 | 131 | 2.27e-18 | 82.8 |
| Msa1344100 | AT3G01320.2 | 42.384 | 151 | 81 | 2 | 13 | 157 | 54 | 204 | 2.95e-30 | 117 |
| Msa1344100 | AT3G01320.2 | 55.405 | 74 | 33 | 0 | 96 | 169 | 58 | 131 | 2.29e-18 | 82.8 |
| Msa1344100 | AT5G15020.1 | 42.105 | 152 | 79 | 2 | 13 | 157 | 49 | 198 | 7.52e-30 | 115 |
| Msa1344100 | AT5G15020.1 | 53.521 | 71 | 33 | 0 | 96 | 166 | 53 | 123 | 4.05e-17 | 79.3 |
| Msa1344100 | AT5G15020.2 | 42.105 | 152 | 79 | 2 | 13 | 157 | 49 | 198 | 7.59e-30 | 115 |
| Msa1344100 | AT5G15020.2 | 53.521 | 71 | 33 | 0 | 96 | 166 | 53 | 123 | 4.13e-17 | 79.3 |
| Msa1344100 | AT1G24230.1 | 34.524 | 168 | 95 | 3 | 13 | 179 | 11 | 164 | 1.69e-29 | 109 |
| Msa1344100 | AT1G24230.1 | 26.174 | 149 | 100 | 3 | 13 | 154 | 83 | 228 | 2.84e-13 | 66.6 |
| Msa1344100 | AT1G70060.2 | 40.994 | 161 | 83 | 2 | 7 | 157 | 5 | 163 | 2.86e-29 | 114 |
| Msa1344100 | AT1G70060.2 | 54.545 | 77 | 35 | 0 | 96 | 172 | 15 | 91 | 2.67e-18 | 82.8 |
| Msa1344100 | AT1G70060.1 | 40.994 | 161 | 83 | 2 | 7 | 157 | 5 | 163 | 2.86e-29 | 114 |
| Msa1344100 | AT1G70060.1 | 54.545 | 77 | 35 | 0 | 96 | 172 | 15 | 91 | 2.67e-18 | 82.8 |
| Msa1344100 | AT1G24200.1 | 37.333 | 150 | 90 | 1 | 12 | 157 | 10 | 159 | 4.10e-28 | 104 |
| Msa1344100 | AT1G24200.1 | 50.000 | 68 | 34 | 0 | 96 | 163 | 15 | 82 | 1.57e-14 | 69.3 |
| Msa1344100 | AT1G27260.1 | 36.538 | 156 | 84 | 2 | 14 | 156 | 1 | 154 | 9.04e-27 | 102 |
| Msa1344100 | AT1G10450.2 | 39.264 | 163 | 83 | 3 | 7 | 157 | 21 | 179 | 1.58e-25 | 103 |
| Msa1344100 | AT1G10450.2 | 48.529 | 68 | 35 | 0 | 96 | 163 | 34 | 101 | 1.45e-12 | 66.2 |
| Msa1344100 | AT1G10450.1 | 39.264 | 163 | 83 | 3 | 7 | 157 | 21 | 179 | 1.58e-25 | 103 |
| Msa1344100 | AT1G10450.1 | 48.529 | 68 | 35 | 0 | 96 | 163 | 34 | 101 | 1.45e-12 | 66.2 |
| Msa1344100 | AT1G10450.3 | 39.264 | 163 | 83 | 3 | 7 | 157 | 72 | 230 | 1.84e-25 | 103 |
| Msa1344100 | AT1G10450.3 | 48.529 | 68 | 35 | 0 | 96 | 163 | 85 | 152 | 1.38e-12 | 66.2 |
| Msa1344100 | AT1G59890.2 | 41.060 | 151 | 74 | 3 | 17 | 157 | 46 | 191 | 3.85e-25 | 102 |
| Msa1344100 | AT1G59890.2 | 50.000 | 74 | 37 | 0 | 96 | 169 | 46 | 119 | 3.48e-15 | 73.6 |
| Msa1344100 | AT1G59890.3 | 41.060 | 151 | 74 | 3 | 17 | 157 | 46 | 191 | 3.96e-25 | 102 |
| Msa1344100 | AT1G59890.3 | 50.000 | 74 | 37 | 0 | 96 | 169 | 46 | 119 | 3.75e-15 | 73.6 |
| Msa1344100 | AT1G59890.1 | 41.060 | 151 | 74 | 3 | 17 | 157 | 46 | 191 | 4.32e-25 | 102 |
| Msa1344100 | AT1G59890.1 | 50.000 | 74 | 37 | 0 | 96 | 169 | 46 | 119 | 3.61e-15 | 73.6 |
| Msa1344100 | AT1G59890.4 | 41.060 | 151 | 74 | 3 | 17 | 157 | 46 | 191 | 4.61e-25 | 102 |
| Msa1344100 | AT1G59890.4 | 50.000 | 74 | 37 | 0 | 96 | 169 | 46 | 119 | 3.97e-15 | 73.6 |
| Msa1344100 | AT1G70030.1 | 35.762 | 151 | 90 | 2 | 13 | 157 | 8 | 157 | 5.19e-23 | 90.5 |
| Msa1344100 | AT1G70030.1 | 44.118 | 68 | 38 | 0 | 99 | 166 | 15 | 82 | 4.38e-13 | 64.7 |
| Msa1344100 | AT1G24250.1 | 29.843 | 191 | 105 | 3 | 1 | 164 | 1 | 189 | 6.25e-21 | 87.4 |
| Msa1344100 | AT1G23810.1 | 32.184 | 174 | 102 | 3 | 7 | 164 | 5 | 178 | 1.59e-20 | 86.3 |
| Msa1344100 | AT5G15025.1 | 55.882 | 68 | 30 | 0 | 13 | 80 | 44 | 111 | 2.19e-19 | 80.1 |
| Msa1344100 | AT5G15025.1 | 42.857 | 77 | 44 | 0 | 94 | 170 | 46 | 122 | 4.02e-14 | 66.2 |
| Msa1344100 | AT4G12020.2 | 59.701 | 67 | 26 | 1 | 13 | 79 | 305 | 370 | 2.67e-18 | 82.8 |
| Msa1344100 | AT4G12020.2 | 46.667 | 75 | 39 | 1 | 95 | 169 | 308 | 381 | 4.76e-15 | 73.2 |
| Msa1344100 | AT4G12020.4 | 59.701 | 67 | 26 | 1 | 13 | 79 | 305 | 370 | 2.78e-18 | 82.8 |
| Msa1344100 | AT4G12020.4 | 46.667 | 75 | 39 | 1 | 95 | 169 | 308 | 381 | 4.85e-15 | 73.2 |
| Msa1344100 | AT4G12020.1 | 59.701 | 67 | 26 | 1 | 13 | 79 | 305 | 370 | 2.90e-18 | 82.8 |
| Msa1344100 | AT4G12020.1 | 46.667 | 75 | 39 | 1 | 95 | 169 | 308 | 381 | 5.07e-15 | 73.2 |
| Msa1344100 | AT4G12020.9 | 59.701 | 67 | 26 | 1 | 13 | 79 | 305 | 370 | 2.90e-18 | 82.8 |
| Msa1344100 | AT4G12020.9 | 46.667 | 75 | 39 | 1 | 95 | 169 | 308 | 381 | 5.07e-15 | 73.2 |
| Msa1344100 | AT4G12020.7 | 59.701 | 67 | 26 | 1 | 13 | 79 | 305 | 370 | 3.16e-18 | 82.4 |
| Msa1344100 | AT4G12020.7 | 46.667 | 75 | 39 | 1 | 95 | 169 | 308 | 381 | 5.42e-15 | 73.2 |
| Msa1344100 | AT4G12020.5 | 59.701 | 67 | 26 | 1 | 13 | 79 | 238 | 303 | 3.17e-18 | 82.4 |
| Msa1344100 | AT4G12020.5 | 46.667 | 75 | 39 | 1 | 95 | 169 | 241 | 314 | 5.37e-15 | 73.2 |
| Msa1344100 | AT4G12020.3 | 59.701 | 67 | 26 | 1 | 13 | 79 | 305 | 370 | 3.33e-18 | 82.4 |
| Msa1344100 | AT4G12020.3 | 46.667 | 75 | 39 | 1 | 95 | 169 | 308 | 381 | 5.76e-15 | 73.2 |
| Msa1344100 | AT5G15040.1 | 52.174 | 69 | 33 | 0 | 14 | 82 | 1 | 69 | 3.43e-18 | 75.9 |
| Msa1344100 | AT5G15040.1 | 43.038 | 79 | 45 | 0 | 93 | 171 | 1 | 79 | 5.06e-13 | 62.4 |
| Msa1344100 | AT5G15040.3 | 52.174 | 69 | 33 | 0 | 14 | 82 | 1 | 69 | 3.43e-18 | 75.9 |
| Msa1344100 | AT5G15040.3 | 43.038 | 79 | 45 | 0 | 93 | 171 | 1 | 79 | 5.06e-13 | 62.4 |
| Msa1344100 | AT5G15040.2 | 52.174 | 69 | 33 | 0 | 14 | 82 | 1 | 69 | 3.43e-18 | 75.9 |
| Msa1344100 | AT5G15040.2 | 43.038 | 79 | 45 | 0 | 93 | 171 | 1 | 79 | 5.06e-13 | 62.4 |
| Msa1344100 | AT4G12020.10 | 59.701 | 67 | 26 | 1 | 13 | 79 | 305 | 370 | 3.59e-18 | 82.4 |
| Msa1344100 | AT4G12020.10 | 46.667 | 75 | 39 | 1 | 95 | 169 | 308 | 381 | 6.27e-15 | 73.2 |
| Msa1344100 | AT4G12020.6 | 59.701 | 67 | 26 | 1 | 13 | 79 | 305 | 370 | 3.75e-18 | 82.4 |
| Msa1344100 | AT4G12020.6 | 46.667 | 75 | 39 | 1 | 95 | 169 | 308 | 381 | 6.37e-15 | 72.8 |
| Msa1344100 | AT4G12020.8 | 59.701 | 67 | 26 | 1 | 13 | 79 | 305 | 370 | 3.75e-18 | 82.4 |
| Msa1344100 | AT4G12020.8 | 46.667 | 75 | 39 | 1 | 95 | 169 | 308 | 381 | 6.37e-15 | 72.8 |
| Msa1344100 | AT4G12020.11 | 59.701 | 67 | 26 | 1 | 13 | 79 | 305 | 370 | 5.49e-18 | 81.6 |
| Msa1344100 | AT4G12020.11 | 46.667 | 75 | 39 | 1 | 95 | 169 | 308 | 381 | 8.86e-15 | 72.4 |
| Msa1344100 | AT1G70030.2 | 36.000 | 125 | 72 | 2 | 1 | 117 | 7 | 131 | 2.67e-16 | 72.4 |
| Msa1344100 | AT1G70030.2 | 44.118 | 68 | 38 | 0 | 99 | 166 | 26 | 93 | 2.40e-13 | 64.7 |
| Msa1344100 | AT1G27250.1 | 43.750 | 80 | 43 | 1 | 2 | 79 | 5 | 84 | 5.00e-16 | 71.6 |
| Msa1344100 | AT1G27250.1 | 42.857 | 77 | 44 | 0 | 86 | 162 | 12 | 88 | 1.12e-12 | 62.8 |
| Msa1344100 | AT1G70030.3 | 38.384 | 99 | 55 | 1 | 13 | 105 | 19 | 117 | 1.44e-15 | 70.1 |
| Msa1344100 | AT1G70030.3 | 44.118 | 68 | 38 | 0 | 99 | 166 | 26 | 93 | 1.40e-13 | 65.1 |
| Msa1344100 | AT1G27220.1 | 46.575 | 73 | 37 | 1 | 9 | 79 | 5 | 77 | 4.12e-15 | 70.5 |
| Msa1344100 | AT1G27220.1 | 42.308 | 78 | 45 | 0 | 86 | 163 | 5 | 82 | 3.48e-13 | 65.5 |
| Msa1344100 | AT1G27270.1 | 33.537 | 164 | 85 | 3 | 15 | 156 | 13 | 174 | 1.26e-14 | 70.1 |
| Msa1344100 | AT1G27280.1 | 29.371 | 143 | 92 | 1 | 28 | 161 | 5 | 147 | 2.28e-13 | 66.6 |
| Msa1344100 | AT1G27280.1 | 39.394 | 66 | 40 | 0 | 13 | 78 | 78 | 143 | 3.40e-11 | 60.5 |
| Msa1344100 | AT1G27240.1 | 39.437 | 71 | 43 | 0 | 12 | 82 | 10 | 80 | 1.28e-12 | 63.9 |
Find 31 sgRNAs with CRISPR-Local
Find 34 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAATTTGTGAAAGCTATTA+AGG | 0.207434 | tig0006790:-23853 | Msa1344100:CDS |
| AGATTGAAGGATTTGTTTAA+AGG | 0.287517 | tig0006790:-24026 | Msa1344100:CDS |
| TAATCAAACTTGCTCCCTTT+TGG | 0.325065 | tig0006790:+23966 | Msa1344100:intergenic |
| AAAGGGAGCAAGTTTGATTA+TGG | 0.329129 | tig0006790:-23963 | Msa1344100:CDS |
| GTACTGATTTGATATTTCTT+TGG | 0.342104 | tig0006790:+23729 | Msa1344100:intergenic |
| AGAGTGAAGGAACTATTTAA+AGG | 0.356818 | tig0006790:-23789 | Msa1344100:CDS |
| GATTGAAGGATTTGTTTAAA+GGG | 0.359025 | tig0006790:-24025 | Msa1344100:CDS |
| AAATGTTATGATGGATTTCA+AGG | 0.397261 | tig0006790:-24081 | Msa1344100:CDS |
| GCTTCTTCCAACACTCCAAA+TGG | 0.411742 | tig0006790:+23933 | Msa1344100:intergenic |
| GGGCATACAAATTTAACGTT+GGG | 0.437947 | tig0006790:-23768 | Msa1344100:CDS |
| GATTATGGCATAGATCCATT+TGG | 0.439528 | tig0006790:-23948 | Msa1344100:CDS |
| TTCAACATCTTCGTGCCAAA+AGG | 0.444915 | tig0006790:-23981 | Msa1344100:CDS |
| GAGTGAAGGAACTATTTAAA+GGG | 0.467701 | tig0006790:-23788 | Msa1344100:CDS |
| CATAGATCCATTTGGAGTGT+TGG | 0.482305 | tig0006790:-23940 | Msa1344100:CDS |
| TATCAAATCAGTACTGATGA+TGG | 0.498943 | tig0006790:-23720 | Msa1344100:CDS |
| TCAACATCTTCGTGCCAAAA+GGG | 0.534332 | tig0006790:-23980 | Msa1344100:CDS |
| TCCATGAGACATGTTATCGC+TGG | 0.536428 | tig0006790:+24193 | Msa1344100:intergenic |
| TGGTGTCATAGCAAGATTGA+AGG | 0.543726 | tig0006790:-24039 | Msa1344100:CDS |
| AGGGCATACAAATTTAACGT+TGG | 0.547701 | tig0006790:-23769 | Msa1344100:CDS |
| TCCAGCGATAACATGTCTCA+TGG | 0.552003 | tig0006790:-24194 | Msa1344100:CDS |
| AGTTGAGTTTCAATATGAGA+GGG | 0.554210 | tig0006790:-23886 | Msa1344100:CDS |
| TGACGTAGAAGCAGAAGACA+TGG | 0.554579 | tig0006790:-23640 | Msa1344100:CDS |
| GCTATTGCTTCTTCCATCGT+GGG | 0.554911 | tig0006790:+24164 | Msa1344100:intergenic |
| GAAAGCTATTAAGGATTGCA+AGG | 0.560574 | tig0006790:-23844 | Msa1344100:CDS |
| TGCTATTGCTTCTTCCATCG+TGG | 0.562428 | tig0006790:+24163 | Msa1344100:intergenic |
| AAGTTGAGTTTCAATATGAG+AGG | 0.581901 | tig0006790:-23887 | Msa1344100:CDS |
| AGAAGCAGAAGACATGGAAG+TGG | 0.582532 | tig0006790:-23634 | Msa1344100:CDS |
| ATGTCTCGCGAAAAGAGTGA+AGG | 0.647795 | tig0006790:-23802 | Msa1344100:CDS |
| GCTATGAAAATTGATACAAG+TGG | 0.667045 | tig0006790:-24059 | Msa1344100:CDS |
| AGAAGCAATAGCATATGTCG+AGG | 0.681954 | tig0006790:-24153 | Msa1344100:CDS |
| TCATGGAGAAGTTCCCACGA+TGG | 0.689488 | tig0006790:-24177 | Msa1344100:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGAATTTTTAAATGTTATGA+TGG | - | tig0006790:23736-23755 | Msa1344100:CDS | 15.0% |
| !!! | AAATGTTATGATGGATTTCA+AGG | - | tig0006790:23745-23764 | Msa1344100:CDS | 25.0% |
| !! | AGATTGAAGGATTTGTTTAA+AGG | - | tig0006790:23800-23819 | Msa1344100:CDS | 25.0% |
| !! | GATTGAAGGATTTGTTTAAA+GGG | - | tig0006790:23801-23820 | Msa1344100:CDS | 25.0% |
| ! | TGAATTTGTGAAAGCTATTA+AGG | - | tig0006790:23973-23992 | Msa1344100:CDS | 25.0% |
| !!! | GTACTGATTTGATATTTCTT+TGG | + | tig0006790:24100-24119 | Msa1344100:intergenic | 25.0% |
| GCTATGAAAATTGATACAAG+TGG | - | tig0006790:23767-23786 | Msa1344100:CDS | 30.0% | |
| !! | GGGCACACAAATTTAATTTT+AGG | - | tig0006790:23821-23840 | Msa1344100:CDS | 30.0% |
| AAGTTGAGTTTCAATATGAG+AGG | - | tig0006790:23939-23958 | Msa1344100:CDS | 30.0% | |
| AGTTGAGTTTCAATATGAGA+GGG | - | tig0006790:23940-23959 | Msa1344100:CDS | 30.0% | |
| AGAGTGAAGGAACTATTTAA+AGG | - | tig0006790:24037-24056 | Msa1344100:CDS | 30.0% | |
| GAGTGAAGGAACTATTTAAA+GGG | - | tig0006790:24038-24057 | Msa1344100:CDS | 30.0% | |
| !! | TATCAAATCAGTACTGATGA+TGG | - | tig0006790:24106-24125 | Msa1344100:CDS | 30.0% |
| !! | TAATCAAACTTGCTCCCTTT+TGG | + | tig0006790:23863-23882 | Msa1344100:intergenic | 35.0% |
| AAAGGGAGCAAGTTTGATTA+TGG | - | tig0006790:23863-23882 | Msa1344100:CDS | 35.0% | |
| GATTATGGCATAGATCCATT+TGG | - | tig0006790:23878-23897 | Msa1344100:CDS | 35.0% | |
| ! | GAAACTCAACTTTTACTGCA+TGG | + | tig0006790:23931-23950 | Msa1344100:intergenic | 35.0% |
| GAAAGCTATTAAGGATTGCA+AGG | - | tig0006790:23982-24001 | Msa1344100:CDS | 35.0% | |
| AGGGCATACAAATTTAACGT+TGG | - | tig0006790:24057-24076 | Msa1344100:CDS | 35.0% | |
| GGGCATACAAATTTAACGTT+GGG | - | tig0006790:24058-24077 | Msa1344100:CDS | 35.0% | |
| AGAAGCAATAGCATATGTCG+AGG | - | tig0006790:23673-23692 | Msa1344100:CDS | 40.0% | |
| !! | TGGTGTCATAGCAAGATTGA+AGG | - | tig0006790:23787-23806 | Msa1344100:CDS | 40.0% |
| TTCAACATCTTCGTGCCAAA+AGG | - | tig0006790:23845-23864 | Msa1344100:CDS | 40.0% | |
| TCAACATCTTCGTGCCAAAA+GGG | - | tig0006790:23846-23865 | Msa1344100:CDS | 40.0% | |
| ! | CATAGATCCATTTGGAGTGT+TGG | - | tig0006790:23886-23905 | Msa1344100:CDS | 40.0% |
| TCCAGCGATAACATGTCTCA+TGG | - | tig0006790:23632-23651 | Msa1344100:CDS | 45.0% | |
| TCCATGAGACATGTTATCGC+TGG | + | tig0006790:23636-23655 | Msa1344100:intergenic | 45.0% | |
| GCTATTGCTTCTTCCATCGT+GGG | + | tig0006790:23665-23684 | Msa1344100:intergenic | 45.0% | |
| TGCTATTGCTTCTTCCATCG+TGG | + | tig0006790:23666-23685 | Msa1344100:intergenic | 45.0% | |
| GCTTCTTCCAACACTCCAAA+TGG | + | tig0006790:23896-23915 | Msa1344100:intergenic | 45.0% | |
| ATGTCTCGCGAAAAGAGTGA+AGG | - | tig0006790:24024-24043 | Msa1344100:CDS | 45.0% | |
| TGACGTAGAAGCAGAAGACA+TGG | - | tig0006790:24186-24205 | Msa1344100:CDS | 45.0% | |
| AGAAGCAGAAGACATGGAAG+TGG | - | tig0006790:24192-24211 | Msa1344100:CDS | 45.0% | |
| TCATGGAGAAGTTCCCACGA+TGG | - | tig0006790:23649-23668 | Msa1344100:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0006790 | gene | 23629 | 24219 | 23629 | ID=Msa1344100;Name=Msa1344100 |
| tig0006790 | mRNA | 23629 | 24219 | 23629 | ID=Msa1344100-mRNA-1;Parent=Msa1344100;Name=Msa1344100-mRNA-1;_AED=0.40;_eAED=0.40;_QI=0|-1|0|1|-1|1|1|0|196 |
| tig0006790 | exon | 23629 | 24219 | 23629 | ID=Msa1344100-mRNA-1:exon:4389;Parent=Msa1344100-mRNA-1 |
| tig0006790 | CDS | 23629 | 24219 | 23629 | ID=Msa1344100-mRNA-1:cds;Parent=Msa1344100-mRNA-1 |
| Gene Sequence |
| Protein sequence |
