Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1344230 | XP_024626810.1 | 98.131 | 107 | 2 | 0 | 1 | 107 | 1 | 107 | 7.12e-67 | 222 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1344230 | sp|Q9FN09|NPY3_ARATH | 68.182 | 110 | 31 | 2 | 1 | 107 | 1 | 109 | 6.67e-47 | 160 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1344230 | G7IE60 | 98.131 | 107 | 2 | 0 | 1 | 107 | 1 | 107 | 3.40e-67 | 222 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1344230 | TR | TRAF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1344230 | MtrunA17_Chr1g0207461 | 98.131 | 107 | 2 | 0 | 1 | 107 | 1 | 107 | 6.55e-71 | 222 |
| Msa1344230 | MtrunA17_Chr5g0401341 | 77.570 | 107 | 22 | 2 | 1 | 107 | 1 | 105 | 1.18e-53 | 176 |
| Msa1344230 | MtrunA17_Chr1g0150191 | 71.963 | 107 | 29 | 1 | 1 | 107 | 1 | 106 | 1.05e-48 | 163 |
| Msa1344230 | MtrunA17_Chr5g0412591 | 49.541 | 109 | 51 | 2 | 1 | 107 | 1 | 107 | 7.42e-33 | 119 |
| Msa1344230 | MtrunA17_Chr8g0367891 | 54.630 | 108 | 46 | 2 | 1 | 107 | 1 | 106 | 2.76e-31 | 115 |
| Msa1344230 | MtrunA17_Chr2g0290741 | 42.056 | 107 | 60 | 1 | 1 | 107 | 1 | 105 | 1.47e-28 | 107 |
| Msa1344230 | MtrunA17_Chr4g0076521 | 43.925 | 107 | 58 | 1 | 1 | 107 | 1 | 105 | 9.95e-28 | 105 |
| Msa1344230 | MtrunA17_Chr2g0285511 | 44.037 | 109 | 57 | 2 | 1 | 107 | 1 | 107 | 2.31e-26 | 101 |
| Msa1344230 | MtrunA17_Chr1g0181181 | 44.037 | 109 | 57 | 2 | 1 | 107 | 1 | 107 | 6.84e-26 | 100 |
| Msa1344230 | MtrunA17_Chr2g0279481 | 45.631 | 103 | 54 | 1 | 5 | 107 | 23 | 123 | 5.25e-25 | 97.8 |
| Msa1344230 | MtrunA17_Chr2g0303541 | 46.296 | 108 | 55 | 2 | 1 | 107 | 1 | 106 | 1.36e-24 | 96.7 |
| Msa1344230 | MtrunA17_Chr4g0050021 | 40.777 | 103 | 59 | 1 | 5 | 107 | 23 | 123 | 1.12e-23 | 94.0 |
| Msa1344230 | MtrunA17_Chr5g0401451 | 45.122 | 82 | 45 | 0 | 25 | 106 | 37 | 118 | 3.49e-23 | 92.4 |
| Msa1344230 | MtrunA17_Chr3g0108331 | 38.835 | 103 | 62 | 1 | 6 | 107 | 1 | 103 | 4.88e-21 | 86.3 |
| Msa1344230 | MtrunA17_Chr5g0432861 | 45.783 | 83 | 45 | 0 | 25 | 107 | 22 | 104 | 1.13e-20 | 85.5 |
| Msa1344230 | MtrunA17_Chr4g0053841 | 42.857 | 84 | 46 | 1 | 25 | 106 | 10 | 93 | 3.10e-20 | 84.0 |
| Msa1344230 | MtrunA17_Chr1g0195911 | 40.741 | 81 | 48 | 0 | 26 | 106 | 34 | 114 | 1.41e-18 | 79.3 |
| Msa1344230 | MtrunA17_Chr7g0268781 | 37.037 | 81 | 51 | 0 | 26 | 106 | 34 | 114 | 1.36e-17 | 76.6 |
| Msa1344230 | MtrunA17_Chr8g0374011 | 39.048 | 105 | 44 | 2 | 23 | 107 | 15 | 119 | 1.83e-17 | 76.3 |
| Msa1344230 | MtrunA17_Chr4g0010091 | 34.524 | 84 | 55 | 0 | 23 | 106 | 29 | 112 | 3.07e-16 | 72.8 |
| Msa1344230 | MtrunA17_Chr1g0191711 | 34.653 | 101 | 60 | 2 | 11 | 107 | 43 | 141 | 3.69e-16 | 72.4 |
| Msa1344230 | MtrunA17_Chr8g0382231 | 37.895 | 95 | 50 | 3 | 18 | 107 | 42 | 132 | 9.89e-16 | 71.2 |
| Msa1344230 | MtrunA17_Chr7g0245201 | 32.967 | 91 | 60 | 1 | 18 | 107 | 51 | 141 | 2.22e-15 | 70.1 |
| Msa1344230 | MtrunA17_Chr2g0320691 | 44.048 | 84 | 45 | 1 | 26 | 107 | 21 | 104 | 3.47e-15 | 69.7 |
| Msa1344230 | MtrunA17_Chr1g0206621 | 41.558 | 77 | 43 | 1 | 32 | 106 | 72 | 148 | 9.27e-15 | 67.4 |
| Msa1344230 | MtrunA17_Chr4g0041491 | 48.276 | 58 | 28 | 1 | 1 | 58 | 1 | 56 | 3.88e-12 | 57.0 |
| Msa1344230 | MtrunA17_Chr1g0199631 | 43.077 | 65 | 32 | 2 | 46 | 107 | 8 | 70 | 2.20e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1344230 | AT5G67440.3 | 68.182 | 110 | 31 | 2 | 1 | 107 | 1 | 109 | 6.78e-48 | 160 |
| Msa1344230 | AT5G67440.1 | 68.182 | 110 | 31 | 2 | 1 | 107 | 1 | 109 | 6.78e-48 | 160 |
| Msa1344230 | AT4G37590.1 | 70.339 | 118 | 23 | 3 | 1 | 107 | 1 | 117 | 7.49e-47 | 158 |
| Msa1344230 | AT2G14820.2 | 69.159 | 107 | 32 | 1 | 1 | 107 | 1 | 106 | 2.77e-45 | 154 |
| Msa1344230 | AT2G14820.1 | 69.159 | 107 | 32 | 1 | 1 | 107 | 1 | 106 | 2.77e-45 | 154 |
| Msa1344230 | AT4G31820.1 | 63.551 | 107 | 38 | 1 | 1 | 107 | 1 | 106 | 2.68e-44 | 151 |
| Msa1344230 | AT2G23050.1 | 67.857 | 112 | 30 | 3 | 1 | 107 | 1 | 111 | 1.65e-42 | 145 |
| Msa1344230 | AT1G67900.5 | 52.336 | 107 | 46 | 3 | 1 | 107 | 1 | 102 | 7.51e-34 | 123 |
| Msa1344230 | AT1G67900.1 | 52.336 | 107 | 46 | 3 | 1 | 107 | 1 | 102 | 7.51e-34 | 123 |
| Msa1344230 | AT1G67900.3 | 52.336 | 107 | 46 | 3 | 1 | 107 | 1 | 102 | 7.51e-34 | 123 |
| Msa1344230 | AT1G67900.6 | 52.336 | 107 | 46 | 3 | 1 | 107 | 1 | 102 | 7.51e-34 | 123 |
| Msa1344230 | AT1G67900.2 | 52.336 | 107 | 46 | 3 | 1 | 107 | 1 | 102 | 7.51e-34 | 123 |
| Msa1344230 | AT1G67900.4 | 52.336 | 107 | 46 | 3 | 1 | 107 | 1 | 102 | 7.51e-34 | 123 |
| Msa1344230 | AT3G26490.2 | 50.909 | 110 | 49 | 2 | 1 | 107 | 1 | 108 | 1.44e-32 | 118 |
| Msa1344230 | AT3G26490.1 | 50.909 | 110 | 49 | 2 | 1 | 107 | 1 | 108 | 3.52e-32 | 118 |
| Msa1344230 | AT3G26490.3 | 50.909 | 110 | 49 | 2 | 1 | 107 | 1 | 108 | 3.52e-32 | 118 |
| Msa1344230 | AT3G26490.4 | 50.909 | 110 | 49 | 2 | 1 | 107 | 1 | 108 | 3.52e-32 | 118 |
| Msa1344230 | AT1G30440.1 | 46.789 | 109 | 54 | 2 | 1 | 107 | 1 | 107 | 8.79e-27 | 103 |
| Msa1344230 | AT5G47800.3 | 42.056 | 107 | 60 | 1 | 1 | 107 | 1 | 105 | 1.08e-25 | 100 |
| Msa1344230 | AT5G47800.1 | 42.056 | 107 | 60 | 1 | 1 | 107 | 1 | 105 | 1.08e-25 | 100 |
| Msa1344230 | AT5G47800.4 | 42.056 | 107 | 60 | 1 | 1 | 107 | 1 | 105 | 1.08e-25 | 100 |
| Msa1344230 | AT5G03250.1 | 41.964 | 112 | 55 | 3 | 1 | 107 | 1 | 107 | 1.26e-25 | 99.8 |
| Msa1344230 | AT5G47800.2 | 42.056 | 107 | 60 | 1 | 1 | 107 | 114 | 218 | 1.37e-25 | 99.8 |
| Msa1344230 | AT5G67440.2 | 66.176 | 68 | 20 | 1 | 43 | 107 | 5 | 72 | 1.05e-24 | 97.1 |
| Msa1344230 | AT5G64330.2 | 41.584 | 101 | 57 | 1 | 7 | 107 | 33 | 131 | 1.46e-22 | 91.3 |
| Msa1344230 | AT5G64330.1 | 41.584 | 101 | 57 | 1 | 7 | 107 | 33 | 131 | 1.47e-22 | 91.3 |
| Msa1344230 | AT4G31820.2 | 67.925 | 53 | 17 | 0 | 55 | 107 | 1 | 53 | 6.40e-20 | 83.6 |
| Msa1344230 | AT5G67385.1 | 39.604 | 101 | 59 | 2 | 9 | 107 | 5 | 105 | 7.54e-20 | 83.6 |
| Msa1344230 | AT5G13600.1 | 38.318 | 107 | 63 | 2 | 1 | 107 | 1 | 104 | 9.31e-20 | 83.2 |
| Msa1344230 | AT1G03010.1 | 39.362 | 94 | 50 | 2 | 18 | 107 | 22 | 112 | 1.27e-19 | 82.8 |
| Msa1344230 | AT1G03010.3 | 41.860 | 86 | 47 | 1 | 22 | 107 | 29 | 111 | 2.36e-19 | 82.0 |
| Msa1344230 | AT1G03010.2 | 42.683 | 82 | 44 | 1 | 26 | 107 | 7 | 85 | 3.71e-19 | 81.3 |
| Msa1344230 | AT3G08660.1 | 39.000 | 100 | 53 | 2 | 8 | 107 | 21 | 112 | 5.35e-19 | 80.9 |
| Msa1344230 | AT3G08660.2 | 39.000 | 100 | 53 | 2 | 8 | 107 | 21 | 112 | 7.22e-19 | 80.5 |
| Msa1344230 | AT2G30520.1 | 40.964 | 83 | 49 | 0 | 25 | 107 | 27 | 109 | 1.09e-18 | 80.1 |
| Msa1344230 | AT2G47860.1 | 38.824 | 85 | 49 | 1 | 22 | 106 | 31 | 112 | 1.60e-18 | 79.7 |
| Msa1344230 | AT2G47860.4 | 38.824 | 85 | 49 | 1 | 22 | 106 | 31 | 112 | 2.47e-18 | 79.0 |
| Msa1344230 | AT5G48800.1 | 33.333 | 84 | 56 | 0 | 23 | 106 | 36 | 119 | 1.31e-16 | 74.3 |
| Msa1344230 | AT3G08570.1 | 36.047 | 86 | 53 | 1 | 24 | 107 | 30 | 115 | 1.56e-16 | 73.9 |
| Msa1344230 | AT3G44820.1 | 34.951 | 103 | 62 | 2 | 8 | 107 | 5 | 105 | 6.47e-16 | 72.0 |
| Msa1344230 | AT5G10250.1 | 38.372 | 86 | 52 | 1 | 23 | 107 | 45 | 130 | 1.57e-15 | 71.2 |
| Msa1344230 | AT5G10250.2 | 38.372 | 86 | 52 | 1 | 23 | 107 | 45 | 130 | 1.67e-15 | 70.9 |
| Msa1344230 | AT2G47860.6 | 30.556 | 108 | 49 | 2 | 22 | 106 | 31 | 135 | 3.29e-14 | 67.4 |
| Msa1344230 | AT3G50840.1 | 36.047 | 86 | 54 | 1 | 23 | 107 | 11 | 96 | 5.08e-14 | 66.6 |
| Msa1344230 | AT2G47860.3 | 30.556 | 108 | 49 | 2 | 22 | 106 | 31 | 135 | 6.57e-14 | 66.6 |
| Msa1344230 | AT3G49970.1 | 47.059 | 68 | 33 | 2 | 41 | 107 | 7 | 72 | 1.15e-12 | 62.8 |
| Msa1344230 | AT3G49970.2 | 47.059 | 68 | 33 | 2 | 41 | 107 | 7 | 72 | 1.15e-12 | 62.8 |
| Msa1344230 | AT5G64330.3 | 39.437 | 71 | 42 | 1 | 38 | 107 | 2 | 72 | 6.94e-12 | 60.8 |
| Msa1344230 | AT2G30520.2 | 43.333 | 60 | 34 | 0 | 48 | 107 | 2 | 61 | 4.67e-11 | 58.2 |
| Msa1344230 | AT2G30520.3 | 43.333 | 60 | 34 | 0 | 48 | 107 | 2 | 61 | 4.67e-11 | 58.2 |
Find 30 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTACTACAACATTGAATTTC+TGG | 0.162727 | tig0006804:-55718 | Msa1344230:intergenic |
| TTCTCTCTTCACCCTTCTTC+TGG | 0.209501 | tig0006804:+55899 | Msa1344230:five_prime_UTR |
| TTGAGTTACCATCTTCTTAG+AGG | 0.298279 | tig0006804:+57184 | Msa1344230:five_prime_UTR |
| ATTAAAGACACTAATGTATT+AGG | 0.298875 | tig0006804:+55758 | Msa1344230:five_prime_UTR |
| TATGTAGGGATGTTTGAATT+AGG | 0.319470 | tig0006804:+57126 | Msa1344230:intron |
| TACTACAACATTGAATTTCT+GGG | 0.374889 | tig0006804:-55717 | Msa1344230:intergenic |
| CCATCAGTCTGAAATGTATC+TGG | 0.381210 | tig0006804:-57257 | Msa1344230:intergenic |
| TTTGTTGTTGTTGCTTGCTA+AGG | 0.436719 | tig0006804:-55789 | Msa1344230:intergenic |
| CTGATGGGAACAACAATGTT+AGG | 0.441088 | tig0006804:+57273 | Msa1344230:CDS |
| AAGATGAAGTTTATGAAACT+TGG | 0.441776 | tig0006804:+57227 | Msa1344230:exon |
| CAGATATTATTGTCAGCATA+GGG | 0.447255 | tig0006804:+58270 | Msa1344230:CDS |
| AATCACATTGTAAGCATTGA+GGG | 0.462223 | tig0006804:-58646 | Msa1344230:intergenic |
| ATTCAAATTTCAGACATTCC+TGG | 0.463677 | tig0006804:+58570 | Msa1344230:CDS |
| CTTACAATGTGATTGCTACT+AGG | 0.469814 | tig0006804:+58655 | Msa1344230:CDS |
| CCAGATACATTTCAGACTGA+TGG | 0.490097 | tig0006804:+57257 | Msa1344230:CDS |
| AGTCTGAAATGTATCTGGCT+TGG | 0.503488 | tig0006804:-57252 | Msa1344230:intergenic |
| TCAGATATTATTGTCAGCAT+AGG | 0.515648 | tig0006804:+58269 | Msa1344230:CDS |
| CTTTCAGGTAAACCAGAAGA+AGG | 0.517351 | tig0006804:-55911 | Msa1344230:intergenic |
| TCTACTTTCCTCTAAGAAGA+TGG | 0.536078 | tig0006804:-57192 | Msa1344230:intergenic |
| CAATCACATTGTAAGCATTG+AGG | 0.552608 | tig0006804:-58647 | Msa1344230:intergenic |
| CAGGTATGTTGCAAGTGAGT+TGG | 0.560221 | tig0006804:+58244 | Msa1344230:intron |
| CAGATACATTTCAGACTGAT+GGG | 0.573177 | tig0006804:+57258 | Msa1344230:CDS |
| TCAAAGGCACTTGCACCACC+AGG | 0.579140 | tig0006804:-58588 | Msa1344230:intergenic |
| GTAAAGATCTTACGCAAACA+TGG | 0.585400 | tig0006804:-55989 | Msa1344230:intergenic |
| ACAACATTGAATTTCTGGGA+TGG | 0.603365 | tig0006804:-55713 | Msa1344230:intergenic |
| TGACAACTCTTTGATATGAG+AGG | 0.609742 | tig0006804:-58501 | Msa1344230:intergenic |
| AAACTTAGCACATATCTCAA+AGG | 0.610871 | tig0006804:-58604 | Msa1344230:intergenic |
| TTTCAGGTAAACCAGAAGAA+GGG | 0.641130 | tig0006804:-55910 | Msa1344230:intergenic |
| CAAATTTCAGACATTCCTGG+TGG | 0.649529 | tig0006804:+58573 | Msa1344230:CDS |
| AGATATTATTGTCAGCATAG+GGG | 0.671630 | tig0006804:+58271 | Msa1344230:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTAAAGAAATGTTTTATAA+TGG | - | tig0006804:55845-55864 | Msa1344230:intergenic | 15.0% |
| !! | AAATCTAGTAAAATAATGTT+AGG | - | tig0006804:56303-56322 | Msa1344230:intergenic | 15.0% |
| !!! | TTAAATACTGAAAAGTATAA+CGG | - | tig0006804:56995-57014 | Msa1344230:intergenic | 15.0% |
| !! | TATGCAAATTTCTTTATATT+AGG | - | tig0006804:57422-57441 | Msa1344230:intergenic | 15.0% |
| !! | AAATATTAAAAGAAACTGTT+GGG | - | tig0006804:57462-57481 | Msa1344230:intergenic | 15.0% |
| !!! | TTTTAATATTTCTTCACTAT+TGG | + | tig0006804:57471-57490 | Msa1344230:intron | 15.0% |
| !!! | ATTTTTAGTGATTAAGAAAA+TGG | + | tig0006804:57572-57591 | Msa1344230:intron | 15.0% |
| !!! | AATAGTAATTTAAGTATTGA+CGG | - | tig0006804:57855-57874 | Msa1344230:intergenic | 15.0% |
| !!! | AAATTGCTATTATATTTATC+AGG | - | tig0006804:58344-58363 | Msa1344230:intergenic | 15.0% |
| !! | AAACTACAAATAAAAAGATT+TGG | - | tig0006804:58481-58500 | Msa1344230:intergenic | 15.0% |
| !! | ATTAAAGACACTAATGTATT+AGG | + | tig0006804:55758-55777 | Msa1344230:five_prime_UTR | 20.0% |
| !!! | TAATAAAGTTTTAAGCTTTC+AGG | - | tig0006804:55929-55948 | Msa1344230:intergenic | 20.0% |
| !! | TAAGATCTTTACTTTCTTAA+TGG | + | tig0006804:56000-56019 | Msa1344230:intron | 20.0% |
| !!! | TTTTGTTTTTCTCTTAGTAA+TGG | + | tig0006804:56042-56061 | Msa1344230:intron | 20.0% |
| !! | TTTCATCTCTAAATTTGAAA+AGG | + | tig0006804:56068-56087 | Msa1344230:intron | 20.0% |
| !! | TTCATCTCTAAATTTGAAAA+GGG | + | tig0006804:56069-56088 | Msa1344230:intron | 20.0% |
| !!! | TTTTTAAACAATGACTCAAA+TGG | + | tig0006804:56112-56131 | Msa1344230:intron | 20.0% |
| !!! | TTTTAAACAATGACTCAAAT+GGG | + | tig0006804:56113-56132 | Msa1344230:intron | 20.0% |
| !!! | TTTTTTATATTGTGATGAGT+TGG | + | tig0006804:56148-56167 | Msa1344230:intron | 20.0% |
| !!! | TTTTTATATTGTGATGAGTT+GGG | + | tig0006804:56149-56168 | Msa1344230:intron | 20.0% |
| !! | TAAAGAAATAAAGAAAAGTG+AGG | + | tig0006804:56721-56740 | Msa1344230:intron | 20.0% |
| !! | TATAAAACATATCCCAAAAA+AGG | - | tig0006804:57108-57127 | Msa1344230:intergenic | 20.0% |
| !! | TTTCTTTATATTAGGAACAA+AGG | - | tig0006804:57414-57433 | Msa1344230:intergenic | 20.0% |
| !! | GAAATATTAAAAGAAACTGT+TGG | - | tig0006804:57463-57482 | Msa1344230:intergenic | 20.0% |
| !! | ACAAAATTAATCTTTCTGAA+AGG | + | tig0006804:57641-57660 | Msa1344230:intron | 20.0% |
| !!! | AAAATTGATGGATAAATAGA+AGG | - | tig0006804:57832-57851 | Msa1344230:intergenic | 20.0% |
| !! | GTCTAATTGAAAAGTAATAA+TGG | - | tig0006804:58037-58056 | Msa1344230:intergenic | 20.0% |
| !! | CAATCTTCTATATTTGAAAA+GGG | - | tig0006804:58070-58089 | Msa1344230:intergenic | 20.0% |
| !!! | CTTTTCAAATATAGAAGATT+GGG | + | tig0006804:58069-58088 | Msa1344230:intron | 20.0% |
| ! | TACTACAACATTGAATTTCT+GGG | - | tig0006804:55720-55739 | None:intergenic | 25.0% |
| ! | ACAACAACAAAAGAAAAAAG+TGG | + | tig0006804:55801-55820 | Msa1344230:intron | 25.0% |
| !!! | ACTGTTTTGTTTTTTGTGTA+TGG | + | tig0006804:55863-55882 | Msa1344230:five_prime_UTR | 25.0% |
| !!! | AAGGGTATGTGTATTTTTTT+AGG | + | tig0006804:56087-56106 | Msa1344230:intron | 25.0% |
| ! | GATCATAACTTTATACTATG+TGG | - | tig0006804:56277-56296 | Msa1344230:intergenic | 25.0% |
| !!! | GATTTTTGTTTGTTACATTC+TGG | + | tig0006804:56318-56337 | Msa1344230:intron | 25.0% |
| ! | TTGTTCATTTATTCCATACT+TGG | + | tig0006804:56432-56451 | Msa1344230:intron | 25.0% |
| ! | ATAGATAGATATACACATGT+TGG | + | tig0006804:56606-56625 | Msa1344230:intron | 25.0% |
| ! | AGAACCTTTGCTTAAAAAAT+TGG | + | tig0006804:56895-56914 | Msa1344230:intron | 25.0% |
| ! | GAACCTTTGCTTAAAAAATT+GGG | + | tig0006804:56896-56915 | Msa1344230:intron | 25.0% |
| !!! | TATCCCAATTTTTTAAGCAA+AGG | - | tig0006804:56902-56921 | Msa1344230:intergenic | 25.0% |
| ! | AAAAGATAGAGAAAGATAAG+TGG | - | tig0006804:56938-56957 | Msa1344230:intergenic | 25.0% |
| ! | GAGAAAAGAAAAGTTTCTAA+AGG | - | tig0006804:57026-57045 | Msa1344230:intergenic | 25.0% |
| ! | AAATGTATATCCAAGTTTCT+TGG | - | tig0006804:57057-57076 | Msa1344230:intergenic | 25.0% |
| !! | TTGGGATATGTTTTATATGT+AGG | + | tig0006804:57111-57130 | Msa1344230:intron | 25.0% |
| !! | TGGGATATGTTTTATATGTA+GGG | + | tig0006804:57112-57131 | Msa1344230:intron | 25.0% |
| ! | AAGATGAAGTTTATGAAACT+TGG | + | tig0006804:57227-57246 | Msa1344230:exon | 25.0% |
| ! | ATAATGCTTGATCTAAATGA+AGG | + | tig0006804:57691-57710 | Msa1344230:intron | 25.0% |
| !! | GTTGTTAAGTTCTTTTACAT+CGG | - | tig0006804:57953-57972 | Msa1344230:intergenic | 25.0% |
| ! | CCAATCTTCTATATTTGAAA+AGG | - | tig0006804:58071-58090 | Msa1344230:intergenic | 25.0% |
| !! | CCTTTTCAAATATAGAAGAT+TGG | + | tig0006804:58068-58087 | Msa1344230:intron | 25.0% |
| ! | GAACAAACTATCTAAAAAGA+GGG | - | tig0006804:58203-58222 | Msa1344230:intergenic | 25.0% |
| ! | AGAACAAACTATCTAAAAAG+AGG | - | tig0006804:58204-58223 | Msa1344230:intergenic | 25.0% |
| !! | TACAAAGTTTTACTTACACA+AGG | + | tig0006804:58295-58314 | Msa1344230:CDS | 25.0% |
| !! | AAATTTCATTCCTTTTAGTG+TGG | - | tig0006804:58422-58441 | Msa1344230:intergenic | 25.0% |
| !! | GATGTTTTCTTCATTATTGA+GGG | - | tig0006804:58544-58563 | Msa1344230:intergenic | 25.0% |
| GTACTACAACATTGAATTTC+TGG | - | tig0006804:55721-55740 | None:intergenic | 30.0% | |
| TTGGGAAAAAAATTGAGTCT+TGG | + | tig0006804:56167-56186 | Msa1344230:intron | 30.0% | |
| TGGGAAAAAAATTGAGTCTT+GGG | + | tig0006804:56168-56187 | Msa1344230:intron | 30.0% | |
| ! | AGCATATTTTTCTACATGTG+TGG | + | tig0006804:56237-56256 | Msa1344230:intron | 30.0% |
| !! | TTTTGTTTGTTACATTCTGG+TGG | + | tig0006804:56321-56340 | Msa1344230:intron | 30.0% |
| !! | ATTCTTGTTGTCTACAGTTT+TGG | + | tig0006804:56461-56480 | Msa1344230:intron | 30.0% |
| AGATATACACATGTTGGATT+TGG | + | tig0006804:56612-56631 | Msa1344230:intron | 30.0% | |
| !! | CTTGAAGCTTTTAAAAGTGT+TGG | + | tig0006804:56637-56656 | Msa1344230:intron | 30.0% |
| !!! | TTTTAAAAGTGTTGGTGGTA+TGG | + | tig0006804:56645-56664 | Msa1344230:intron | 30.0% |
| AGAAATAAAGAAAAGTGAGG+TGG | + | tig0006804:56724-56743 | Msa1344230:intron | 30.0% | |
| TAAGCAAAGGTTCTCTTAAA+TGG | - | tig0006804:56889-56908 | Msa1344230:intergenic | 30.0% | |
| AAAGATAAGTGGTCTAGATT+GGG | - | tig0006804:56927-56946 | Msa1344230:intergenic | 30.0% | |
| ! | AAAAGTTTCTAAAGGCAACA+AGG | - | tig0006804:57018-57037 | Msa1344230:intergenic | 30.0% |
| ATATACATTTCAGTGTTAGC+TGG | + | tig0006804:57067-57086 | Msa1344230:intron | 30.0% | |
| !!! | TTGTCTTCTCATTCCTTTTT+TGG | + | tig0006804:57092-57111 | Msa1344230:intron | 30.0% |
| !!! | TGTCTTCTCATTCCTTTTTT+GGG | + | tig0006804:57093-57112 | Msa1344230:intron | 30.0% |
| TATGTAGGGATGTTTGAATT+AGG | + | tig0006804:57126-57145 | Msa1344230:intron | 30.0% | |
| CATTGCATAAAGTAGAAAAG+CGG | - | tig0006804:57538-57557 | Msa1344230:intergenic | 30.0% | |
| CAAAAAAAGGAAGACGAAAA+AGG | - | tig0006804:57611-57630 | Msa1344230:intergenic | 30.0% | |
| !! | CTTTTTCGTCTTCCTTTTTT+TGG | + | tig0006804:57609-57628 | Msa1344230:intron | 30.0% |
| ATAGTCATGAAGAACATAGA+AGG | - | tig0006804:57673-57692 | Msa1344230:intergenic | 30.0% | |
| !! | AAGTATTGACGGAAAATTGA+TGG | - | tig0006804:57844-57863 | Msa1344230:intergenic | 30.0% |
| !! | TTCTTTGAAGCTGTCTTTAT+TGG | + | tig0006804:57988-58007 | Msa1344230:intron | 30.0% |
| TCAGATATTATTGTCAGCAT+AGG | + | tig0006804:58269-58288 | Msa1344230:CDS | 30.0% | |
| CAGATATTATTGTCAGCATA+GGG | + | tig0006804:58270-58289 | Msa1344230:CDS | 30.0% | |
| AGATATTATTGTCAGCATAG+GGG | + | tig0006804:58271-58290 | Msa1344230:CDS | 30.0% | |
| GCTATTATATTTATCAGGCA+TGG | - | tig0006804:58339-58358 | Msa1344230:intergenic | 30.0% | |
| ! | ATTTATCATCTTTTGCCTTG+TGG | + | tig0006804:58444-58463 | Msa1344230:intron | 30.0% |
| ! | CGATGTTTTCTTCATTATTG+AGG | - | tig0006804:58545-58564 | Msa1344230:intergenic | 30.0% |
| ATTCAAATTTCAGACATTCC+TGG | + | tig0006804:58570-58589 | Msa1344230:CDS | 30.0% | |
| AAACTTAGCACATATCTCAA+AGG | - | tig0006804:58607-58626 | Msa1344230:intergenic | 30.0% | |
| ! | ATATGTGCTAAGTTTTGCTA+CGG | + | tig0006804:58612-58631 | Msa1344230:CDS | 30.0% |
| !! | AATCACATTGTAAGCATTGA+GGG | - | tig0006804:58649-58668 | Msa1344230:intergenic | 30.0% |
| ! | ACAACATTGAATTTCTGGGA+TGG | - | tig0006804:55716-55735 | None:intergenic | 35.0% |
| !! | TTTGTTGTTGTTGCTTGCTA+AGG | - | tig0006804:55792-55811 | Msa1344230:intergenic | 35.0% |
| ! | TTTCAGGTAAACCAGAAGAA+GGG | - | tig0006804:55913-55932 | Msa1344230:intergenic | 35.0% |
| GTAAAGATCTTACGCAAACA+TGG | - | tig0006804:55992-56011 | Msa1344230:intergenic | 35.0% | |
| GAAAAAAATTGAGTCTTGGG+TGG | + | tig0006804:56171-56190 | Msa1344230:intron | 35.0% | |
| ! | TTTACACGGAGAGTGATTTT+GGG | + | tig0006804:56202-56221 | Msa1344230:intron | 35.0% |
| ! | CAAGAATCTTTTGCCAAGTA+TGG | - | tig0006804:56448-56467 | Msa1344230:intergenic | 35.0% |
| ! | TGCAGGTTTTCAAACTTCAA+CGG | + | tig0006804:56521-56540 | Msa1344230:intron | 35.0% |
| !!! | GAAGCTTTTAAAAGTGTTGG+TGG | + | tig0006804:56640-56659 | Msa1344230:intron | 35.0% |
| ACAGTGTAATCAGATAGTGA+AGG | + | tig0006804:56697-56716 | Msa1344230:intron | 35.0% | |
| GTTTAGTGTTAGTACTCTGT+TGG | + | tig0006804:56777-56796 | Msa1344230:intron | 35.0% | |
| CTAACAAGAGATTGTTTCCT+TGG | - | tig0006804:56857-56876 | Msa1344230:intergenic | 35.0% | |
| GAAAGATAAGTGGTCTAGAT+TGG | - | tig0006804:56928-56947 | Msa1344230:intergenic | 35.0% | |
| TCTCTTAAAGCCAAGAAACT+TGG | + | tig0006804:57044-57063 | Msa1344230:intron | 35.0% | |
| TTGAGTTACCATCTTCTTAG+AGG | + | tig0006804:57184-57203 | Msa1344230:five_prime_UTR | 35.0% | |
| ! | TCTACTTTCCTCTAAGAAGA+TGG | - | tig0006804:57195-57214 | Msa1344230:intergenic | 35.0% |
| CAGATACATTTCAGACTGAT+GGG | + | tig0006804:57258-57277 | Msa1344230:CDS | 35.0% | |
| AAGCGGAAATCAAAACTAGT+AGG | - | tig0006804:57521-57540 | Msa1344230:intergenic | 35.0% | |
| !!! | TTCGTCTTCCTTTTTTTGGT+TGG | + | tig0006804:57613-57632 | Msa1344230:intron | 35.0% |
| AAAAGAGTAGAACCCTAGAA+TGG | - | tig0006804:58154-58173 | Msa1344230:intergenic | 35.0% | |
| TATTTATCAGGCATGGTAGA+AGG | - | tig0006804:58332-58351 | Msa1344230:intergenic | 35.0% | |
| ! | TTCCTTTTAGTGTGGTGTAA+GGG | - | tig0006804:58414-58433 | Msa1344230:intergenic | 35.0% |
| ! | ATTCCTTTTAGTGTGGTGTA+AGG | - | tig0006804:58415-58434 | Msa1344230:intergenic | 35.0% |
| TGACAACTCTTTGATATGAG+AGG | - | tig0006804:58504-58523 | Msa1344230:intergenic | 35.0% | |
| ! | CAATCACATTGTAAGCATTG+AGG | - | tig0006804:58650-58669 | Msa1344230:intergenic | 35.0% |
| CTTACAATGTGATTGCTACT+AGG | + | tig0006804:58655-58674 | Msa1344230:CDS | 35.0% | |
| ! | CTTTCAGGTAAACCAGAAGA+AGG | - | tig0006804:55914-55933 | Msa1344230:intergenic | 40.0% |
| AATTGAGTCTTGGGTGGTAT+TGG | + | tig0006804:56177-56196 | Msa1344230:intron | 40.0% | |
| ! | GTTTACACGGAGAGTGATTT+TGG | + | tig0006804:56201-56220 | Msa1344230:intron | 40.0% |
| !! | CTTGTTGTCTACAGTTTTGG+TGG | + | tig0006804:56464-56483 | Msa1344230:intron | 40.0% |
| TGCAACTGAAAACAGCATCT+TGG | - | tig0006804:56505-56524 | Msa1344230:intergenic | 40.0% | |
| !!! | AAGATGCTGTTTTCAGTTGC+AGG | + | tig0006804:56504-56523 | Msa1344230:intron | 40.0% |
| CAAGAGATTGTTTCCTTGGT+CGG | - | tig0006804:56853-56872 | Msa1344230:intergenic | 40.0% | |
| ! | AGTCTGAAATGTATCTGGCT+TGG | - | tig0006804:57255-57274 | Msa1344230:intergenic | 40.0% |
| ! | CCATCAGTCTGAAATGTATC+TGG | - | tig0006804:57260-57279 | Msa1344230:intergenic | 40.0% |
| CCAGATACATTTCAGACTGA+TGG | + | tig0006804:57257-57276 | Msa1344230:CDS | 40.0% | |
| CTGATGGGAACAACAATGTT+AGG | + | tig0006804:57273-57292 | Msa1344230:CDS | 40.0% | |
| TGTCATCGCCAACCAAAAAA+AGG | - | tig0006804:57624-57643 | Msa1344230:intergenic | 40.0% | |
| GTCATGAAGAACATAGAAGG+CGG | - | tig0006804:57670-57689 | Msa1344230:intergenic | 40.0% | |
| GAAGGATACACAGATACATG+CGG | + | tig0006804:57709-57728 | Msa1344230:intron | 40.0% | |
| AGATACATGCGGAGAAATGT+AGG | + | tig0006804:57720-57739 | Msa1344230:intron | 40.0% | |
| TTATTGTTGCTGACCTGACT+AGG | + | tig0006804:57763-57782 | Msa1344230:intron | 40.0% | |
| TGAATGTACAAGTCCTAGTC+AGG | - | tig0006804:57779-57798 | Msa1344230:intergenic | 40.0% | |
| TTGATCTAGCCACCATTCTA+GGG | + | tig0006804:58139-58158 | Msa1344230:intron | 40.0% | |
| TTCCCTTACACCACACTAAA+AGG | + | tig0006804:58409-58428 | Msa1344230:intron | 40.0% | |
| ! | TTGGAGTATCAGTATCCACA+AGG | - | tig0006804:58462-58481 | Msa1344230:intergenic | 40.0% |
| CAAATTTCAGACATTCCTGG+TGG | + | tig0006804:58573-58592 | Msa1344230:CDS | 40.0% | |
| TTCTCTCTTCACCCTTCTTC+TGG | + | tig0006804:55899-55918 | Msa1344230:five_prime_UTR | 45.0% | |
| !! | GGGTGGTATTGGTGTTTACA+CGG | + | tig0006804:56188-56207 | Msa1344230:intron | 45.0% |
| TGGAGTCAGATTTGTGTCTC+TGG | + | tig0006804:56744-56763 | Msa1344230:intron | 45.0% | |
| CTATGTTCCCTGAGCTGATT+CGG | + | tig0006804:56800-56819 | Msa1344230:intron | 45.0% | |
| TTGACAGCAAACAAGGCAGA+AGG | - | tig0006804:56968-56987 | Msa1344230:intergenic | 45.0% | |
| CGGAATCTTGACAGCAAACA+AGG | - | tig0006804:56975-56994 | Msa1344230:intergenic | 45.0% | |
| CTTGATCTAGCCACCATTCT+AGG | + | tig0006804:58138-58157 | Msa1344230:intron | 45.0% | |
| AGAGTAGAACCCTAGAATGG+TGG | - | tig0006804:58151-58170 | Msa1344230:intergenic | 45.0% | |
| CAGGTATGTTGCAAGTGAGT+TGG | + | tig0006804:58244-58263 | Msa1344230:intron | 45.0% | |
| !! | CGGAGAGTGATTTTGGGTAG+TGG | + | tig0006804:56208-56227 | Msa1344230:intron | 50.0% |
| GAGATTGTTTCCTTGGTCGG+CGG | - | tig0006804:56850-56869 | Msa1344230:intergenic | 50.0% | |
| TCAAGATGCCTTTCATGCGC+AGG | + | tig0006804:58225-58244 | Msa1344230:intron | 50.0% | |
| GCAACATACCTGCGCATGAA+AGG | - | tig0006804:58236-58255 | Msa1344230:intergenic | 50.0% | |
| !! | TCAAAGGCACTTGCACCACC+AGG | - | tig0006804:58591-58610 | Msa1344230:intergenic | 55.0% |
| GTTTCCTTGGTCGGCGGCAA+AGG | - | tig0006804:56844-56863 | Msa1344230:intergenic | 60.0% | |
| GGGCGCACCGAATCAGCTCA+GGG | - | tig0006804:56810-56829 | Msa1344230:intergenic | 65.0% | |
| !! | CTGAGCTGATTCGGTGCGCC+CGG | + | tig0006804:56809-56828 | Msa1344230:intron | 65.0% |
| TTGGTCGGCGGCAAAGGCCA+CGG | - | tig0006804:56838-56857 | Msa1344230:intergenic | 65.0% | |
| CGGGCGCACCGAATCAGCTC+AGG | - | tig0006804:56811-56830 | Msa1344230:intergenic | 70.0% | |
| CGGCAAAGGCCACGGAGTCC+GGG | - | tig0006804:56830-56849 | Msa1344230:intergenic | 70.0% | |
| GCGGCAAAGGCCACGGAGTC+CGG | - | tig0006804:56831-56850 | Msa1344230:intergenic | 70.0% | |
| GTGGCCTTTGCCGCCGACCA+AGG | + | tig0006804:56837-56856 | Msa1344230:intron | 70.0% | |
| ! | TTCGGTGCGCCCGGACTCCG+TGG | + | tig0006804:56818-56837 | Msa1344230:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0006804 | gene | 55682 | 58683 | 55682 | ID=Msa1344230;Name=Msa1344230 |
| tig0006804 | mRNA | 55682 | 58683 | 55682 | ID=Msa1344230-mRNA-1;Parent=Msa1344230;Name=Msa1344230-mRNA-1;_AED=0.00;_eAED=0.00;_QI=385|1|0.8|1|0.5|0.4|5|0|107 |
| tig0006804 | exon | 55682 | 55812 | 55682 | ID=Msa1344230-mRNA-1:exon:4424;Parent=Msa1344230-mRNA-1 |
| tig0006804 | exon | 55842 | 55998 | 55842 | ID=Msa1344230-mRNA-1:exon:4425;Parent=Msa1344230-mRNA-1 |
| tig0006804 | exon | 57133 | 57294 | 57133 | ID=Msa1344230-mRNA-1:exon:4426;Parent=Msa1344230-mRNA-1 |
| tig0006804 | exon | 58247 | 58316 | 58247 | ID=Msa1344230-mRNA-1:exon:4427;Parent=Msa1344230-mRNA-1 |
| tig0006804 | exon | 58498 | 58683 | 58498 | ID=Msa1344230-mRNA-1:exon:4428;Parent=Msa1344230-mRNA-1 |
| tig0006804 | five_prime_UTR | 55682 | 55812 | 55682 | ID=Msa1344230-mRNA-1:five_prime_utr;Parent=Msa1344230-mRNA-1 |
| tig0006804 | five_prime_UTR | 55842 | 55998 | 55842 | ID=Msa1344230-mRNA-1:five_prime_utr;Parent=Msa1344230-mRNA-1 |
| tig0006804 | five_prime_UTR | 57133 | 57229 | 57133 | ID=Msa1344230-mRNA-1:five_prime_utr;Parent=Msa1344230-mRNA-1 |
| tig0006804 | CDS | 57230 | 57294 | 57230 | ID=Msa1344230-mRNA-1:cds;Parent=Msa1344230-mRNA-1 |
| tig0006804 | CDS | 58247 | 58316 | 58247 | ID=Msa1344230-mRNA-1:cds;Parent=Msa1344230-mRNA-1 |
| tig0006804 | CDS | 58498 | 58683 | 58498 | ID=Msa1344230-mRNA-1:cds;Parent=Msa1344230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
