AlfalfaGEDB | Msa1344230

M. sativa cultivar zhongmu-4 / Msa1344230

KEGG: -
GO: GO:0005575 GO:0005623 GO:0008150 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009958 GO:0044464 GO:0050896 GO:0071944
PFAM: PF00651.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1344230	XP_024626810.1	98.131	107	2	0	1	107	1	107	7.12e-67	222

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1344230	sp\|Q9FN09\|NPY3_ARATH	68.182	110	31	2	1	107	1	109	6.67e-47	160

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1344230	G7IE60	98.131	107	2	0	1	107	1	107	3.40e-67	222

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TFs/TRs:

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Gene ID	Type	Classification
Msa1344230	TR	TRAF

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1344230	MtrunA17_Chr1g0207461	98.131	107	2	0	1	107	1	107	6.55e-71	222
Msa1344230	MtrunA17_Chr5g0401341	77.570	107	22	2	1	107	1	105	1.18e-53	176
Msa1344230	MtrunA17_Chr1g0150191	71.963	107	29	1	1	107	1	106	1.05e-48	163
Msa1344230	MtrunA17_Chr5g0412591	49.541	109	51	2	1	107	1	107	7.42e-33	119
Msa1344230	MtrunA17_Chr8g0367891	54.630	108	46	2	1	107	1	106	2.76e-31	115
Msa1344230	MtrunA17_Chr2g0290741	42.056	107	60	1	1	107	1	105	1.47e-28	107
Msa1344230	MtrunA17_Chr4g0076521	43.925	107	58	1	1	107	1	105	9.95e-28	105
Msa1344230	MtrunA17_Chr2g0285511	44.037	109	57	2	1	107	1	107	2.31e-26	101
Msa1344230	MtrunA17_Chr1g0181181	44.037	109	57	2	1	107	1	107	6.84e-26	100
Msa1344230	MtrunA17_Chr2g0279481	45.631	103	54	1	5	107	23	123	5.25e-25	97.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1344230	AT5G67440.3	68.182	110	31	2	1	107	1	109	6.78e-48	160
Msa1344230	AT5G67440.1	68.182	110	31	2	1	107	1	109	6.78e-48	160
Msa1344230	AT4G37590.1	70.339	118	23	3	1	107	1	117	7.49e-47	158
Msa1344230	AT2G14820.2	69.159	107	32	1	1	107	1	106	2.77e-45	154
Msa1344230	AT2G14820.1	69.159	107	32	1	1	107	1	106	2.77e-45	154
Msa1344230	AT4G31820.1	63.551	107	38	1	1	107	1	106	2.68e-44	151
Msa1344230	AT2G23050.1	67.857	112	30	3	1	107	1	111	1.65e-42	145
Msa1344230	AT1G67900.5	52.336	107	46	3	1	107	1	102	7.51e-34	123
Msa1344230	AT1G67900.1	52.336	107	46	3	1	107	1	102	7.51e-34	123
Msa1344230	AT1G67900.3	52.336	107	46	3	1	107	1	102	7.51e-34	123

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Find 30 sgRNAs with CRISPR-Local

Find 158 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTTAGCACATATCTCAA+AGG	0.610871	tig0006804:-58604	Msa1344230:intergenic
AAGATGAAGTTTATGAAACT+TGG	0.441776	tig0006804:+57227	Msa1344230:exon
AATCACATTGTAAGCATTGA+GGG	0.462223	tig0006804:-58646	Msa1344230:intergenic
ACAACATTGAATTTCTGGGA+TGG	0.603365	tig0006804:-55713	Msa1344230:intergenic
AGATATTATTGTCAGCATAG+GGG	0.671630	tig0006804:+58271	Msa1344230:CDS
AGTCTGAAATGTATCTGGCT+TGG	0.503488	tig0006804:-57252	Msa1344230:intergenic
ATTAAAGACACTAATGTATT+AGG	0.298875	tig0006804:+55758	Msa1344230:five_prime_UTR
ATTCAAATTTCAGACATTCC+TGG	0.463677	tig0006804:+58570	Msa1344230:CDS
CAAATTTCAGACATTCCTGG+TGG	0.649529	tig0006804:+58573	Msa1344230:CDS
CAATCACATTGTAAGCATTG+AGG	0.552608	tig0006804:-58647	Msa1344230:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTACTACAACATTGAATTTC+TGG	-	tig0006804:55721-55740	None:intergenic	30.0%
TTGGGAAAAAAATTGAGTCT+TGG	+	tig0006804:56167-56186	Msa1344230:intron	30.0%
TGGGAAAAAAATTGAGTCTT+GGG	+	tig0006804:56168-56187	Msa1344230:intron	30.0%
AGATATACACATGTTGGATT+TGG	+	tig0006804:56612-56631	Msa1344230:intron	30.0%
AGAAATAAAGAAAAGTGAGG+TGG	+	tig0006804:56724-56743	Msa1344230:intron	30.0%
TAAGCAAAGGTTCTCTTAAA+TGG	-	tig0006804:56889-56908	Msa1344230:intergenic	30.0%
AAAGATAAGTGGTCTAGATT+GGG	-	tig0006804:56927-56946	Msa1344230:intergenic	30.0%
ATATACATTTCAGTGTTAGC+TGG	+	tig0006804:57067-57086	Msa1344230:intron	30.0%
TATGTAGGGATGTTTGAATT+AGG	+	tig0006804:57126-57145	Msa1344230:intron	30.0%
CATTGCATAAAGTAGAAAAG+CGG	-	tig0006804:57538-57557	Msa1344230:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0006804	gene	55682	58683	55682	ID=Msa1344230;Name=Msa1344230
tig0006804	mRNA	55682	58683	55682	ID=Msa1344230-mRNA-1;Parent=Msa1344230;Name=Msa1344230-mRNA-1;_AED=0.00;_eAED=0.00;_QI=385\|1\|0.8\|1\|0.5\|0.4\|5\|0\|107
tig0006804	exon	55682	55812	55682	ID=Msa1344230-mRNA-1:exon:4424;Parent=Msa1344230-mRNA-1
tig0006804	exon	55842	55998	55842	ID=Msa1344230-mRNA-1:exon:4425;Parent=Msa1344230-mRNA-1
tig0006804	exon	57133	57294	57133	ID=Msa1344230-mRNA-1:exon:4426;Parent=Msa1344230-mRNA-1
tig0006804	exon	58247	58316	58247	ID=Msa1344230-mRNA-1:exon:4427;Parent=Msa1344230-mRNA-1
tig0006804	exon	58498	58683	58498	ID=Msa1344230-mRNA-1:exon:4428;Parent=Msa1344230-mRNA-1
tig0006804	five_prime_UTR	55682	55812	55682	ID=Msa1344230-mRNA-1:five_prime_utr;Parent=Msa1344230-mRNA-1
tig0006804	five_prime_UTR	55842	55998	55842	ID=Msa1344230-mRNA-1:five_prime_utr;Parent=Msa1344230-mRNA-1
tig0006804	five_prime_UTR	57133	57229	57133	ID=Msa1344230-mRNA-1:five_prime_utr;Parent=Msa1344230-mRNA-1
tig0006804	CDS	57230	57294	57230	ID=Msa1344230-mRNA-1:cds;Parent=Msa1344230-mRNA-1
tig0006804	CDS	58247	58316	58247	ID=Msa1344230-mRNA-1:cds;Parent=Msa1344230-mRNA-1
tig0006804	CDS	58498	58683	58498	ID=Msa1344230-mRNA-1:cds;Parent=Msa1344230-mRNA-1

Gene Sequence	>Msa1344230 ATGAAGTTTATGAAACTTGGTTCCAAGCCAGATACATTTCAGACTGATGGGAACAACAATGTTAGGTATGTTGCAAGTGAGTTGGCATCAGATATTATTGTCAGCATAGGGGATACAAAGTTTTACTTACACAAGTTTCCTCTCATATCAAAGAGTTGTCACTTACAGAAGTTGATCTCCCTCAATAATGAAGAAAACATCGACGAAATTCAAATTTCAGACATTCCTGGTGGTGCAAGTGCCTTTGAGATATGTGCTAAGTTTTGCTACGGCATGACTGTTACCCTCAATGCTTACAATGTGATTGCTACTAGGTGTGCA
Protein sequence	>Msa1344230 MKFMKLGSKPDTFQTDGNNNVRYVASELASDIIVSIGDTKFYLHKFPLISKSCHLQKLISLNNEENIDEIQISDIPGGASAFEICAKFCYGMTVTLNAYNVIATRCA