Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1344300 | XP_003592480.1 | 95.137 | 329 | 16 | 0 | 1 | 329 | 1 | 329 | 0.0 | 640 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1344300 | sp|Q7XHI9|BH084_ARATH | 37.500 | 352 | 149 | 12 | 10 | 324 | 6 | 323 | 2.06e-56 | 189 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1344300 | G7IE61 | 95.137 | 329 | 16 | 0 | 1 | 329 | 1 | 329 | 0.0 | 640 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1344300 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1344300 | MtrunA17_Chr1g0207301 | 95.137 | 329 | 16 | 0 | 1 | 329 | 51 | 379 | 0.0 | 639 |
| Msa1344300 | MtrunA17_Chr5g0393721 | 49.699 | 332 | 131 | 10 | 9 | 329 | 9 | 315 | 6.95e-87 | 264 |
| Msa1344300 | MtrunA17_Chr1g0207311 | 42.331 | 326 | 146 | 7 | 1 | 326 | 1 | 284 | 1.23e-59 | 193 |
| Msa1344300 | MtrunA17_Chr3g0134741 | 52.761 | 163 | 76 | 1 | 161 | 323 | 153 | 314 | 3.16e-49 | 167 |
| Msa1344300 | MtrunA17_Chr1g0152651 | 51.235 | 162 | 69 | 2 | 152 | 313 | 198 | 349 | 6.82e-41 | 146 |
| Msa1344300 | MtrunA17_Chr5g0435021 | 62.857 | 70 | 26 | 0 | 237 | 306 | 217 | 286 | 7.59e-24 | 99.4 |
| Msa1344300 | MtrunA17_Chr8g0384141 | 53.623 | 69 | 32 | 0 | 234 | 302 | 110 | 178 | 3.55e-18 | 82.8 |
| Msa1344300 | MtrunA17_Chr4g0074161 | 44.444 | 90 | 48 | 1 | 214 | 301 | 180 | 269 | 7.77e-18 | 83.6 |
| Msa1344300 | MtrunA17_Chr3g0134001 | 49.254 | 67 | 34 | 0 | 234 | 300 | 167 | 233 | 8.48e-17 | 79.0 |
| Msa1344300 | MtrunA17_Chr7g0243041 | 58.182 | 55 | 23 | 0 | 245 | 299 | 33 | 87 | 2.69e-16 | 75.1 |
| Msa1344300 | MtrunA17_Chr1g0190731 | 48.529 | 68 | 35 | 0 | 234 | 301 | 189 | 256 | 2.75e-15 | 75.9 |
| Msa1344300 | MtrunA17_Chr1g0153241 | 36.275 | 102 | 59 | 1 | 220 | 315 | 61 | 162 | 1.57e-13 | 69.7 |
| Msa1344300 | MtrunA17_Chr5g0402031 | 43.421 | 76 | 43 | 0 | 254 | 329 | 121 | 196 | 4.47e-13 | 69.3 |
| Msa1344300 | MtrunA17_Chr1g0193321 | 33.636 | 110 | 56 | 2 | 194 | 301 | 431 | 525 | 1.58e-12 | 68.6 |
| Msa1344300 | MtrunA17_Chr1g0182791 | 38.554 | 83 | 44 | 1 | 226 | 301 | 298 | 380 | 6.68e-12 | 66.2 |
| Msa1344300 | MtrunA17_Chr2g0330641 | 37.903 | 124 | 72 | 2 | 180 | 300 | 231 | 352 | 1.18e-11 | 65.1 |
| Msa1344300 | MtrunA17_Chr3g0095391 | 33.333 | 102 | 53 | 3 | 224 | 315 | 288 | 384 | 2.35e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1344300 | AT2G14760.1 | 37.500 | 352 | 149 | 12 | 10 | 324 | 6 | 323 | 2.09e-57 | 189 |
| Msa1344300 | AT2G14760.3 | 36.164 | 365 | 149 | 13 | 10 | 324 | 6 | 336 | 1.17e-53 | 179 |
| Msa1344300 | AT5G43175.1 | 55.484 | 155 | 54 | 2 | 187 | 326 | 66 | 220 | 1.72e-46 | 157 |
| Msa1344300 | AT4G33880.1 | 79.775 | 89 | 18 | 0 | 232 | 320 | 260 | 348 | 2.34e-46 | 160 |
| Msa1344300 | AT1G27740.1 | 53.947 | 152 | 52 | 3 | 176 | 326 | 121 | 255 | 2.07e-45 | 155 |
| Msa1344300 | AT1G66470.1 | 54.839 | 93 | 41 | 1 | 214 | 306 | 172 | 263 | 1.20e-24 | 101 |
| Msa1344300 | AT5G37800.1 | 61.039 | 77 | 27 | 1 | 230 | 306 | 196 | 269 | 1.47e-24 | 101 |
| Msa1344300 | AT4G30980.1 | 46.988 | 83 | 44 | 0 | 219 | 301 | 111 | 193 | 9.52e-19 | 85.5 |
| Msa1344300 | AT4G30980.2 | 46.988 | 83 | 44 | 0 | 219 | 301 | 159 | 241 | 1.14e-18 | 86.3 |
| Msa1344300 | AT2G24260.2 | 55.385 | 65 | 29 | 0 | 237 | 301 | 34 | 98 | 1.80e-18 | 84.0 |
| Msa1344300 | AT2G24260.1 | 55.385 | 65 | 29 | 0 | 237 | 301 | 137 | 201 | 4.91e-18 | 84.3 |
| Msa1344300 | AT5G58010.1 | 48.571 | 70 | 36 | 0 | 232 | 301 | 93 | 162 | 5.34e-17 | 80.5 |
| Msa1344300 | AT3G21330.1 | 39.394 | 99 | 59 | 1 | 202 | 300 | 234 | 331 | 3.13e-16 | 79.3 |
| Msa1344300 | AT5G01305.1 | 48.649 | 74 | 33 | 1 | 237 | 305 | 36 | 109 | 3.47e-16 | 75.5 |
| Msa1344300 | AT4G00120.1 | 51.852 | 54 | 26 | 0 | 247 | 300 | 121 | 174 | 3.49e-15 | 73.6 |
| Msa1344300 | AT4G36930.1 | 43.077 | 65 | 37 | 0 | 254 | 318 | 207 | 271 | 5.77e-12 | 66.6 |
| Msa1344300 | AT1G09530.3 | 39.394 | 66 | 40 | 0 | 254 | 319 | 353 | 418 | 8.40e-12 | 66.2 |
| Msa1344300 | AT1G09530.2 | 39.394 | 66 | 40 | 0 | 254 | 319 | 353 | 418 | 8.40e-12 | 66.2 |
| Msa1344300 | AT1G09530.5 | 39.394 | 66 | 40 | 0 | 254 | 319 | 353 | 418 | 8.40e-12 | 66.2 |
| Msa1344300 | AT1G09530.1 | 39.394 | 66 | 40 | 0 | 254 | 319 | 353 | 418 | 8.40e-12 | 66.2 |
| Msa1344300 | AT1G09530.4 | 39.394 | 66 | 40 | 0 | 254 | 319 | 353 | 418 | 8.40e-12 | 66.2 |
| Msa1344300 | AT1G09530.6 | 39.394 | 66 | 40 | 0 | 254 | 319 | 353 | 418 | 8.40e-12 | 66.2 |
| Msa1344300 | AT2G20180.7 | 36.957 | 92 | 47 | 2 | 242 | 324 | 211 | 300 | 2.45e-11 | 64.7 |
| Msa1344300 | AT2G20180.1 | 36.957 | 92 | 47 | 2 | 242 | 324 | 211 | 300 | 2.45e-11 | 64.7 |
| Msa1344300 | AT2G20180.5 | 36.957 | 92 | 47 | 2 | 242 | 324 | 211 | 300 | 2.45e-11 | 64.7 |
| Msa1344300 | AT2G20180.4 | 46.667 | 60 | 32 | 0 | 242 | 301 | 282 | 341 | 2.61e-11 | 64.7 |
| Msa1344300 | AT2G20180.6 | 46.667 | 60 | 32 | 0 | 242 | 301 | 282 | 341 | 2.61e-11 | 64.7 |
| Msa1344300 | AT2G20180.2 | 46.667 | 60 | 32 | 0 | 242 | 301 | 282 | 341 | 2.61e-11 | 64.7 |
| Msa1344300 | AT2G20180.3 | 46.667 | 60 | 32 | 0 | 242 | 301 | 282 | 341 | 2.61e-11 | 64.7 |
| Msa1344300 | AT4G28790.1 | 41.558 | 77 | 35 | 2 | 254 | 321 | 287 | 362 | 4.17e-11 | 63.9 |
| Msa1344300 | AT4G00050.2 | 50.000 | 48 | 24 | 0 | 254 | 301 | 121 | 168 | 4.96e-11 | 63.2 |
| Msa1344300 | AT4G00050.1 | 50.000 | 48 | 24 | 0 | 254 | 301 | 223 | 270 | 9.04e-11 | 62.8 |
Find 52 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAACAGATTTGAAGTTAA+AGG | 0.203807 | tig0006806:+31544 | Msa1344300:CDS |
| TCAAATCTGTTGAATCATTC+TGG | 0.235168 | tig0006806:-31535 | None:intergenic |
| CATTAGGGACTAGGCTTTGT+AGG | 0.283545 | tig0006806:-31792 | None:intergenic |
| AACACTATAAGTGCTAAAAT+TGG | 0.312512 | tig0006806:-30936 | None:intergenic |
| TTCATTCCATTGTAAGCAAT+TGG | 0.326950 | tig0006806:-32145 | None:intergenic |
| CAAGTTTCTGAGCACCATTA+TGG | 0.327811 | tig0006806:+30686 | Msa1344300:CDS |
| TCAACAGATTTGAAGTTAAA+GGG | 0.332099 | tig0006806:+31545 | Msa1344300:CDS |
| AGAGTTTGGTAAAGATGTTT+TGG | 0.332649 | tig0006806:+31000 | Msa1344300:CDS |
| CTAAATTGAAATTTCCATAA+TGG | 0.336286 | tig0006806:-30700 | None:intergenic |
| CCTTGGTTCCATTAGGGACT+AGG | 0.345834 | tig0006806:-31801 | None:intergenic |
| CATAATGGTGCTCAGAAACT+TGG | 0.346093 | tig0006806:-30685 | None:intergenic |
| GAAAACACTTCTGAAGAGTT+TGG | 0.361815 | tig0006806:+30986 | Msa1344300:CDS |
| CAAGGAAAGAAAATGGATTC+TGG | 0.368940 | tig0006806:+30575 | None:intergenic |
| TTTAGCACTTATAGTGTTCA+AGG | 0.374420 | tig0006806:+30941 | Msa1344300:CDS |
| AAAGCTACCTTGGTTCCATT+AGG | 0.376583 | tig0006806:-31808 | None:intergenic |
| GGATGAAAGTCATGATCTTC+AGG | 0.377305 | tig0006806:+31436 | Msa1344300:CDS |
| ACAAGAGAAATGTGAAATCT+AGG | 0.391427 | tig0006806:+31375 | Msa1344300:CDS |
| AAGCTACCTTGGTTCCATTA+GGG | 0.399329 | tig0006806:-31807 | None:intergenic |
| CTACAAAGCCTAGTCCCTAA+TGG | 0.408904 | tig0006806:+31793 | Msa1344300:CDS |
| TATATTGCTAGTATCAGAAA+TGG | 0.424213 | tig0006806:-30846 | None:intergenic |
| GCTATATATCTATTGTAGTT+CGG | 0.424749 | tig0006806:-32197 | None:intergenic |
| GAAGAATGGAGTTCTCTTAG+TGG | 0.449677 | tig0006806:+30611 | Msa1344300:CDS |
| ACTATTGTGGATTCATGTCC+TGG | 0.460970 | tig0006806:-30743 | None:intergenic |
| TAGAAATTCCATCTACATCA+TGG | 0.473913 | tig0006806:+30720 | Msa1344300:CDS |
| AATATATTTCATAATACAAA+TGG | 0.474972 | tig0006806:+30863 | Msa1344300:CDS |
| TGTCCTGGCCATGATGTAGA+TGG | 0.481256 | tig0006806:-30728 | None:intergenic |
| GGAAAATCAAAATGTAATAG+AGG | 0.481291 | tig0006806:+31566 | Msa1344300:CDS |
| GCTATTCATGCTCACTATTG+TGG | 0.481463 | tig0006806:-30756 | None:intergenic |
| GGCATTCATGTAGCCAATGT+TGG | 0.502539 | tig0006806:-30915 | None:intergenic |
| AAGATCTAGGAGCTCGATGA+AGG | 0.519130 | tig0006806:+31069 | Msa1344300:CDS |
| GCTTACAATGGAATGAACAT+TGG | 0.525606 | tig0006806:+32151 | Msa1344300:CDS |
| GTGAGCAAAGTTGTGAAGAA+TGG | 0.531367 | tig0006806:+30597 | Msa1344300:CDS |
| TTCTGAGCTCTGATGATCAC+TGG | 0.538373 | tig0006806:+32113 | Msa1344300:CDS |
| AATGATCATGTAGCCAACAT+TGG | 0.547548 | tig0006806:+30902 | Msa1344300:CDS |
| GAAGAGAAAGAATAAATGAA+AGG | 0.551355 | tig0006806:+31761 | Msa1344300:CDS |
| ATTCCATCTACATCATGGCC+AGG | 0.561187 | tig0006806:+30725 | Msa1344300:CDS |
| GTTCTTGATACACTCTTTCG+CGG | 0.570482 | tig0006806:-31026 | None:intergenic |
| TCAGGAGCAGAATTTGAGCT+CGG | 0.588142 | tig0006806:+31454 | Msa1344300:CDS |
| GCTTTAAAGAAGCTAAATGC+AGG | 0.589797 | tig0006806:+31494 | Msa1344300:CDS |
| GGATATCAGCACCATGCTTG+AGG | 0.592275 | tig0006806:+31911 | Msa1344300:CDS |
| TATGCTCCAATTGCTTACAA+TGG | 0.606083 | tig0006806:+32139 | Msa1344300:CDS |
| ATATTTCATAATACAAATGG+TGG | 0.608776 | tig0006806:+30866 | Msa1344300:CDS |
| TTGCACAGCTTCCTCAAGCA+TGG | 0.610000 | tig0006806:-31922 | None:intergenic |
| GTTCAAAAGCAACGCTGACG+AGG | 0.610341 | tig0006806:+31415 | Msa1344300:CDS |
| ATCTAGGAAGAAACCAAAGT+GGG | 0.612043 | tig0006806:+31391 | Msa1344300:CDS |
| ATAGACACCTTGTGGATCAG+AGG | 0.616647 | tig0006806:-31594 | None:intergenic |
| GTTCGGTTGAGATAATGTTG+AGG | 0.644696 | tig0006806:-32180 | None:intergenic |
| CCTAGTCCCTAATGGAACCA+AGG | 0.646129 | tig0006806:+31801 | Msa1344300:CDS |
| GGAGCAGAATTTGAGCTCGG+AGG | 0.653936 | tig0006806:+31457 | Msa1344300:CDS |
| AATCTAGGAAGAAACCAAAG+TGG | 0.682276 | tig0006806:+31390 | Msa1344300:CDS |
| GGTTCTGCCTCTGATCCACA+AGG | 0.702545 | tig0006806:+31587 | Msa1344300:CDS |
| AGAGTGTATCAAGAACAACC+TGG | 0.703200 | tig0006806:+31033 | Msa1344300:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATATTTCATAATACAAA+TGG | + | tig0006806:30863-30882 | Msa1344300:CDS | 10.0% |
| !! | TATTTCAAGAATATATAATA+TGG | - | tig0006806:32046-32065 | None:intergenic | 10.0% |
| !! | AATATATTTCATAATACAAA+TGG | + | tig0006806:30863-30882 | Msa1344300:CDS | 10.0% |
| !! | TATTTCAAGAATATATAATA+TGG | - | tig0006806:32046-32065 | None:intergenic | 10.0% |
| !!! | TTCAAATACTTTAAGATAAT+TGG | + | tig0006806:31842-31861 | Msa1344300:intron | 15.0% |
| !!! | TATGAATCCAAATTTTAATT+CGG | + | tig0006806:32007-32026 | Msa1344300:intron | 15.0% |
| !!! | TTCAAATACTTTAAGATAAT+TGG | + | tig0006806:31842-31861 | Msa1344300:intron | 15.0% |
| !!! | TATGAATCCAAATTTTAATT+CGG | + | tig0006806:32007-32026 | Msa1344300:intron | 15.0% |
| !! | CTAAATTGAAATTTCCATAA+TGG | - | tig0006806:30703-30722 | None:intergenic | 20.0% |
| !! | ATATTTCATAATACAAATGG+TGG | + | tig0006806:30866-30885 | Msa1344300:CDS | 20.0% |
| !!! | TATTTGTTTACATTTAAGAC+CGG | + | tig0006806:31198-31217 | Msa1344300:intron | 20.0% |
| !!! | TTTTGATTTAATGATTCCAT+AGG | + | tig0006806:31343-31362 | Msa1344300:intron | 20.0% |
| !!! | ATTTTGAACTATTAAAGGAT+TGG | + | tig0006806:31702-31721 | Msa1344300:intron | 20.0% |
| !!! | TTTTCTTACTCATGAATTAT+AGG | + | tig0006806:31887-31906 | Msa1344300:intron | 20.0% |
| !! | TAAAATTTGGATTCATAGTA+AGG | - | tig0006806:32004-32023 | None:intergenic | 20.0% |
| !! | CTAAATTGAAATTTCCATAA+TGG | - | tig0006806:30703-30722 | None:intergenic | 20.0% |
| !! | ATATTTCATAATACAAATGG+TGG | + | tig0006806:30866-30885 | Msa1344300:CDS | 20.0% |
| !!! | TATTTGTTTACATTTAAGAC+CGG | + | tig0006806:31198-31217 | Msa1344300:intron | 20.0% |
| !!! | TTTTGATTTAATGATTCCAT+AGG | + | tig0006806:31343-31362 | Msa1344300:intron | 20.0% |
| !!! | ATTTTGAACTATTAAAGGAT+TGG | + | tig0006806:31702-31721 | Msa1344300:intron | 20.0% |
| !!! | TTTTCTTACTCATGAATTAT+AGG | + | tig0006806:31887-31906 | Msa1344300:intron | 20.0% |
| !! | TAAAATTTGGATTCATAGTA+AGG | - | tig0006806:32004-32023 | None:intergenic | 20.0% |
| !! | TTACTATTATCAGCATTTTG+AGG | - | tig0006806:30794-30813 | None:intergenic | 25.0% |
| ! | TATATTGCTAGTATCAGAAA+TGG | - | tig0006806:30849-30868 | None:intergenic | 25.0% |
| ! | AACACTATAAGTGCTAAAAT+TGG | - | tig0006806:30939-30958 | None:intergenic | 25.0% |
| ! | AAAAATCAGGAAAAAGATCT+AGG | + | tig0006806:31056-31075 | Msa1344300:CDS | 25.0% |
| ! | GGTATTATGTATAAGCAAAA+AGG | + | tig0006806:31136-31155 | Msa1344300:intron | 25.0% |
| !!! | TCAATGTGTTTAATTTTGTC+TGG | + | tig0006806:31300-31319 | Msa1344300:intron | 25.0% |
| !! | TTCAACAGATTTGAAGTTAA+AGG | + | tig0006806:31544-31563 | Msa1344300:CDS | 25.0% |
| !! | TCAACAGATTTGAAGTTAAA+GGG | + | tig0006806:31545-31564 | Msa1344300:CDS | 25.0% |
| ! | GGAAAATCAAAATGTAATAG+AGG | + | tig0006806:31566-31585 | Msa1344300:CDS | 25.0% |
| !! | TTATTAGCAATGGTATTTTG+AGG | - | tig0006806:31647-31666 | None:intergenic | 25.0% |
| ! | GGACTTAAAATTATTAGCAA+TGG | - | tig0006806:31657-31676 | None:intergenic | 25.0% |
| !! | CTGTGATTTTGAACTATTAA+AGG | + | tig0006806:31697-31716 | Msa1344300:intron | 25.0% |
| ! | GAAGAGAAAGAATAAATGAA+AGG | + | tig0006806:31761-31780 | Msa1344300:CDS | 25.0% |
| !!! | CTCATGTTTTTACCTTAATT+TGG | - | tig0006806:31968-31987 | None:intergenic | 25.0% |
| ! | CAAATTAAGGTAAAAACATG+AGG | + | tig0006806:31966-31985 | Msa1344300:intron | 25.0% |
| !! | TTTTGCACCGAATTAAAATT+TGG | - | tig0006806:32017-32036 | None:intergenic | 25.0% |
| !! | TTACTATTATCAGCATTTTG+AGG | - | tig0006806:30794-30813 | None:intergenic | 25.0% |
| ! | TATATTGCTAGTATCAGAAA+TGG | - | tig0006806:30849-30868 | None:intergenic | 25.0% |
| ! | AACACTATAAGTGCTAAAAT+TGG | - | tig0006806:30939-30958 | None:intergenic | 25.0% |
| ! | AAAAATCAGGAAAAAGATCT+AGG | + | tig0006806:31056-31075 | Msa1344300:CDS | 25.0% |
| ! | GGTATTATGTATAAGCAAAA+AGG | + | tig0006806:31136-31155 | Msa1344300:intron | 25.0% |
| !!! | TCAATGTGTTTAATTTTGTC+TGG | + | tig0006806:31300-31319 | Msa1344300:intron | 25.0% |
| !! | TTCAACAGATTTGAAGTTAA+AGG | + | tig0006806:31544-31563 | Msa1344300:CDS | 25.0% |
| !! | TCAACAGATTTGAAGTTAAA+GGG | + | tig0006806:31545-31564 | Msa1344300:CDS | 25.0% |
| ! | GGAAAATCAAAATGTAATAG+AGG | + | tig0006806:31566-31585 | Msa1344300:CDS | 25.0% |
| !! | TTATTAGCAATGGTATTTTG+AGG | - | tig0006806:31647-31666 | None:intergenic | 25.0% |
| ! | GGACTTAAAATTATTAGCAA+TGG | - | tig0006806:31657-31676 | None:intergenic | 25.0% |
| !! | CTGTGATTTTGAACTATTAA+AGG | + | tig0006806:31697-31716 | Msa1344300:intron | 25.0% |
| ! | GAAGAGAAAGAATAAATGAA+AGG | + | tig0006806:31761-31780 | Msa1344300:CDS | 25.0% |
| !!! | CTCATGTTTTTACCTTAATT+TGG | - | tig0006806:31968-31987 | None:intergenic | 25.0% |
| ! | CAAATTAAGGTAAAAACATG+AGG | + | tig0006806:31966-31985 | Msa1344300:intron | 25.0% |
| !! | TTTTGCACCGAATTAAAATT+TGG | - | tig0006806:32017-32036 | None:intergenic | 25.0% |
| TAGAAATTCCATCTACATCA+TGG | + | tig0006806:30720-30739 | Msa1344300:CDS | 30.0% | |
| TTTAGCACTTATAGTGTTCA+AGG | + | tig0006806:30941-30960 | Msa1344300:CDS | 30.0% | |
| ! | AAGTGTTTTCAGTTATCTGT+TGG | - | tig0006806:30976-30995 | None:intergenic | 30.0% |
| ! | AGAGTTTGGTAAAGATGTTT+TGG | + | tig0006806:31000-31019 | Msa1344300:CDS | 30.0% |
| ! | ATCTTTTTCCTGATTTTTCC+AGG | - | tig0006806:31054-31073 | None:intergenic | 30.0% |
| TGCTTATACATAATACCAGA+GGG | - | tig0006806:31133-31152 | None:intergenic | 30.0% | |
| TTGCTTATACATAATACCAG+AGG | - | tig0006806:31134-31153 | None:intergenic | 30.0% | |
| ACAAGAGAAATGTGAAATCT+AGG | + | tig0006806:31375-31394 | Msa1344300:CDS | 30.0% | |
| TCAAATCTGTTGAATCATTC+TGG | - | tig0006806:31538-31557 | None:intergenic | 30.0% | |
| !! | GTATTTTGAGGAAATGCAAT+TGG | - | tig0006806:31635-31654 | None:intergenic | 30.0% |
| GTACTTTGGACAAAAATTCA+AGG | - | tig0006806:31678-31697 | None:intergenic | 30.0% | |
| AGTTCAAAATCACAGTACTT+TGG | - | tig0006806:31692-31711 | None:intergenic | 30.0% | |
| TCTTACTCATGAATTATAGG+TGG | + | tig0006806:31890-31909 | Msa1344300:intron | 30.0% | |
| ! | GCAATATGTGAAGTTTTTAC+AGG | + | tig0006806:31941-31960 | Msa1344300:CDS | 30.0% |
| ! | GTTTTTACAGGTCCAAATTA+AGG | + | tig0006806:31953-31972 | Msa1344300:CDS | 30.0% |
| TTCATTCCATTGTAAGCAAT+TGG | - | tig0006806:32148-32167 | None:intergenic | 30.0% | |
| TAGAAATTCCATCTACATCA+TGG | + | tig0006806:30720-30739 | Msa1344300:CDS | 30.0% | |
| TTTAGCACTTATAGTGTTCA+AGG | + | tig0006806:30941-30960 | Msa1344300:CDS | 30.0% | |
| ! | AAGTGTTTTCAGTTATCTGT+TGG | - | tig0006806:30976-30995 | None:intergenic | 30.0% |
| ! | AGAGTTTGGTAAAGATGTTT+TGG | + | tig0006806:31000-31019 | Msa1344300:CDS | 30.0% |
| ! | ATCTTTTTCCTGATTTTTCC+AGG | - | tig0006806:31054-31073 | None:intergenic | 30.0% |
| TGCTTATACATAATACCAGA+GGG | - | tig0006806:31133-31152 | None:intergenic | 30.0% | |
| TTGCTTATACATAATACCAG+AGG | - | tig0006806:31134-31153 | None:intergenic | 30.0% | |
| ACAAGAGAAATGTGAAATCT+AGG | + | tig0006806:31375-31394 | Msa1344300:CDS | 30.0% | |
| TCAAATCTGTTGAATCATTC+TGG | - | tig0006806:31538-31557 | None:intergenic | 30.0% | |
| !! | GTATTTTGAGGAAATGCAAT+TGG | - | tig0006806:31635-31654 | None:intergenic | 30.0% |
| GTACTTTGGACAAAAATTCA+AGG | - | tig0006806:31678-31697 | None:intergenic | 30.0% | |
| AGTTCAAAATCACAGTACTT+TGG | - | tig0006806:31692-31711 | None:intergenic | 30.0% | |
| TCTTACTCATGAATTATAGG+TGG | + | tig0006806:31890-31909 | Msa1344300:intron | 30.0% | |
| ! | GCAATATGTGAAGTTTTTAC+AGG | + | tig0006806:31941-31960 | Msa1344300:CDS | 30.0% |
| ! | GTTTTTACAGGTCCAAATTA+AGG | + | tig0006806:31953-31972 | Msa1344300:CDS | 30.0% |
| TTCATTCCATTGTAAGCAAT+TGG | - | tig0006806:32148-32167 | None:intergenic | 30.0% | |
| AATGATCATGTAGCCAACAT+TGG | + | tig0006806:30902-30921 | Msa1344300:CDS | 35.0% | |
| ! | GAAAACACTTCTGAAGAGTT+TGG | + | tig0006806:30986-31005 | Msa1344300:CDS | 35.0% |
| AAGAACAACCTGGAAAAATC+AGG | + | tig0006806:31043-31062 | Msa1344300:CDS | 35.0% | |
| TCTTTGTAAATTACTCCCTC+TGG | + | tig0006806:31115-31134 | Msa1344300:intron | 35.0% | |
| ! | TTGTTTACATTTAAGACCGG+TGG | + | tig0006806:31201-31220 | Msa1344300:intron | 35.0% |
| ! | TGTTTACATTTAAGACCGGT+GGG | + | tig0006806:31202-31221 | Msa1344300:intron | 35.0% |
| CCAGGACTATAAAAAAAAGC+AGG | - | tig0006806:31240-31259 | None:intergenic | 35.0% | |
| !!! | CCTGCTTTTTTTTATAGTCC+TGG | + | tig0006806:31237-31256 | Msa1344300:intron | 35.0% |
| GTGATATTGTGACAAGCATT+TGG | + | tig0006806:31259-31278 | Msa1344300:intron | 35.0% | |
| ! | CTCTTGTTCTTTTGTACCTA+TGG | - | tig0006806:31362-31381 | None:intergenic | 35.0% |
| AATCTAGGAAGAAACCAAAG+TGG | + | tig0006806:31390-31409 | Msa1344300:CDS | 35.0% | |
| ATCTAGGAAGAAACCAAAGT+GGG | + | tig0006806:31391-31410 | Msa1344300:CDS | 35.0% | |
| !! | GCTTTAAAGAAGCTAAATGC+AGG | + | tig0006806:31494-31513 | Msa1344300:CDS | 35.0% |
| AAAAACATGAGGATCCTCTT+TGG | + | tig0006806:31977-31996 | Msa1344300:intron | 35.0% | |
| AAAACATGAGGATCCTCTTT+GGG | + | tig0006806:31978-31997 | Msa1344300:intron | 35.0% | |
| TATGCTCCAATTGCTTACAA+TGG | + | tig0006806:32139-32158 | Msa1344300:CDS | 35.0% | |
| GCTTACAATGGAATGAACAT+TGG | + | tig0006806:32151-32170 | Msa1344300:CDS | 35.0% | |
| AATGATCATGTAGCCAACAT+TGG | + | tig0006806:30902-30921 | Msa1344300:CDS | 35.0% | |
| ! | GAAAACACTTCTGAAGAGTT+TGG | + | tig0006806:30986-31005 | Msa1344300:CDS | 35.0% |
| AAGAACAACCTGGAAAAATC+AGG | + | tig0006806:31043-31062 | Msa1344300:CDS | 35.0% | |
| TCTTTGTAAATTACTCCCTC+TGG | + | tig0006806:31115-31134 | Msa1344300:intron | 35.0% | |
| ! | TTGTTTACATTTAAGACCGG+TGG | + | tig0006806:31201-31220 | Msa1344300:intron | 35.0% |
| ! | TGTTTACATTTAAGACCGGT+GGG | + | tig0006806:31202-31221 | Msa1344300:intron | 35.0% |
| CCAGGACTATAAAAAAAAGC+AGG | - | tig0006806:31240-31259 | None:intergenic | 35.0% | |
| !!! | CCTGCTTTTTTTTATAGTCC+TGG | + | tig0006806:31237-31256 | Msa1344300:intron | 35.0% |
| GTGATATTGTGACAAGCATT+TGG | + | tig0006806:31259-31278 | Msa1344300:intron | 35.0% | |
| ! | CTCTTGTTCTTTTGTACCTA+TGG | - | tig0006806:31362-31381 | None:intergenic | 35.0% |
| AATCTAGGAAGAAACCAAAG+TGG | + | tig0006806:31390-31409 | Msa1344300:CDS | 35.0% | |
| ATCTAGGAAGAAACCAAAGT+GGG | + | tig0006806:31391-31410 | Msa1344300:CDS | 35.0% | |
| !! | GCTTTAAAGAAGCTAAATGC+AGG | + | tig0006806:31494-31513 | Msa1344300:CDS | 35.0% |
| AAAAACATGAGGATCCTCTT+TGG | + | tig0006806:31977-31996 | Msa1344300:intron | 35.0% | |
| AAAACATGAGGATCCTCTTT+GGG | + | tig0006806:31978-31997 | Msa1344300:intron | 35.0% | |
| TATGCTCCAATTGCTTACAA+TGG | + | tig0006806:32139-32158 | Msa1344300:CDS | 35.0% | |
| GCTTACAATGGAATGAACAT+TGG | + | tig0006806:32151-32170 | Msa1344300:CDS | 35.0% | |
| GTGAGCAAAGTTGTGAAGAA+TGG | + | tig0006806:30597-30616 | Msa1344300:CDS | 40.0% | |
| GAAGAATGGAGTTCTCTTAG+TGG | + | tig0006806:30611-30630 | Msa1344300:CDS | 40.0% | |
| !!! | TAGTGGATTTTACACAGCTG+AGG | + | tig0006806:30628-30647 | Msa1344300:CDS | 40.0% |
| !! | AGCTGAGGAAGCTGATTTTA+TGG | + | tig0006806:30643-30662 | Msa1344300:CDS | 40.0% |
| !! | GCTGAGGAAGCTGATTTTAT+GGG | + | tig0006806:30644-30663 | Msa1344300:CDS | 40.0% |
| !! | CTGAGGAAGCTGATTTTATG+GGG | + | tig0006806:30645-30664 | Msa1344300:CDS | 40.0% |
| CATAATGGTGCTCAGAAACT+TGG | - | tig0006806:30688-30707 | None:intergenic | 40.0% | |
| CAAGTTTCTGAGCACCATTA+TGG | + | tig0006806:30686-30705 | Msa1344300:CDS | 40.0% | |
| ACTATTGTGGATTCATGTCC+TGG | - | tig0006806:30746-30765 | None:intergenic | 40.0% | |
| GCTATTCATGCTCACTATTG+TGG | - | tig0006806:30759-30778 | None:intergenic | 40.0% | |
| GTTCTTGATACACTCTTTCG+CGG | - | tig0006806:31029-31048 | None:intergenic | 40.0% | |
| AGAGTGTATCAAGAACAACC+TGG | + | tig0006806:31033-31052 | Msa1344300:CDS | 40.0% | |
| ATGCTTGTCACAATATCACC+AGG | - | tig0006806:31258-31277 | None:intergenic | 40.0% | |
| !! | TTGCTTTTGAACTCCCACTT+TGG | - | tig0006806:31407-31426 | None:intergenic | 40.0% |
| GGATGAAAGTCATGATCTTC+AGG | + | tig0006806:31436-31455 | Msa1344300:CDS | 40.0% | |
| ! | ACTTTTGCATAGACACCTTG+TGG | - | tig0006806:31605-31624 | None:intergenic | 40.0% |
| AAGCTACCTTGGTTCCATTA+GGG | - | tig0006806:31810-31829 | None:intergenic | 40.0% | |
| AAAGCTACCTTGGTTCCATT+AGG | - | tig0006806:31811-31830 | None:intergenic | 40.0% | |
| TGTCATTGAGAAAGCTACCT+TGG | - | tig0006806:31821-31840 | None:intergenic | 40.0% | |
| ATTCATAGTAAGGCCCAAAG+AGG | - | tig0006806:31994-32013 | None:intergenic | 40.0% | |
| GTTCGGTTGAGATAATGTTG+AGG | - | tig0006806:32183-32202 | None:intergenic | 40.0% | |
| GTGAGCAAAGTTGTGAAGAA+TGG | + | tig0006806:30597-30616 | Msa1344300:CDS | 40.0% | |
| GAAGAATGGAGTTCTCTTAG+TGG | + | tig0006806:30611-30630 | Msa1344300:CDS | 40.0% | |
| !!! | TAGTGGATTTTACACAGCTG+AGG | + | tig0006806:30628-30647 | Msa1344300:CDS | 40.0% |
| !! | AGCTGAGGAAGCTGATTTTA+TGG | + | tig0006806:30643-30662 | Msa1344300:CDS | 40.0% |
| !! | GCTGAGGAAGCTGATTTTAT+GGG | + | tig0006806:30644-30663 | Msa1344300:CDS | 40.0% |
| !! | CTGAGGAAGCTGATTTTATG+GGG | + | tig0006806:30645-30664 | Msa1344300:CDS | 40.0% |
| CATAATGGTGCTCAGAAACT+TGG | - | tig0006806:30688-30707 | None:intergenic | 40.0% | |
| CAAGTTTCTGAGCACCATTA+TGG | + | tig0006806:30686-30705 | Msa1344300:CDS | 40.0% | |
| ACTATTGTGGATTCATGTCC+TGG | - | tig0006806:30746-30765 | None:intergenic | 40.0% | |
| GCTATTCATGCTCACTATTG+TGG | - | tig0006806:30759-30778 | None:intergenic | 40.0% | |
| GTTCTTGATACACTCTTTCG+CGG | - | tig0006806:31029-31048 | None:intergenic | 40.0% | |
| AGAGTGTATCAAGAACAACC+TGG | + | tig0006806:31033-31052 | Msa1344300:CDS | 40.0% | |
| ATGCTTGTCACAATATCACC+AGG | - | tig0006806:31258-31277 | None:intergenic | 40.0% | |
| !! | TTGCTTTTGAACTCCCACTT+TGG | - | tig0006806:31407-31426 | None:intergenic | 40.0% |
| GGATGAAAGTCATGATCTTC+AGG | + | tig0006806:31436-31455 | Msa1344300:CDS | 40.0% | |
| ! | ACTTTTGCATAGACACCTTG+TGG | - | tig0006806:31605-31624 | None:intergenic | 40.0% |
| AAGCTACCTTGGTTCCATTA+GGG | - | tig0006806:31810-31829 | None:intergenic | 40.0% | |
| AAAGCTACCTTGGTTCCATT+AGG | - | tig0006806:31811-31830 | None:intergenic | 40.0% | |
| TGTCATTGAGAAAGCTACCT+TGG | - | tig0006806:31821-31840 | None:intergenic | 40.0% | |
| ATTCATAGTAAGGCCCAAAG+AGG | - | tig0006806:31994-32013 | None:intergenic | 40.0% | |
| GTTCGGTTGAGATAATGTTG+AGG | - | tig0006806:32183-32202 | None:intergenic | 40.0% | |
| ATTCCATCTACATCATGGCC+AGG | + | tig0006806:30725-30744 | Msa1344300:CDS | 45.0% | |
| GGCATTCATGTAGCCAATGT+TGG | - | tig0006806:30918-30937 | None:intergenic | 45.0% | |
| AAGATCTAGGAGCTCGATGA+AGG | + | tig0006806:31069-31088 | Msa1344300:CDS | 45.0% | |
| ! | AAGCAAAAAGGTGCGTGTGT+TGG | + | tig0006806:31148-31167 | Msa1344300:intron | 45.0% |
| TCAGGAGCAGAATTTGAGCT+CGG | + | tig0006806:31454-31473 | Msa1344300:CDS | 45.0% | |
| ATAGACACCTTGTGGATCAG+AGG | - | tig0006806:31597-31616 | None:intergenic | 45.0% | |
| ! | CATTAGGGACTAGGCTTTGT+AGG | - | tig0006806:31795-31814 | None:intergenic | 45.0% |
| CTACAAAGCCTAGTCCCTAA+TGG | + | tig0006806:31793-31812 | Msa1344300:CDS | 45.0% | |
| ! | TTCTGAGCTCTGATGATCAC+TGG | + | tig0006806:32113-32132 | Msa1344300:CDS | 45.0% |
| ATTCCATCTACATCATGGCC+AGG | + | tig0006806:30725-30744 | Msa1344300:CDS | 45.0% | |
| GGCATTCATGTAGCCAATGT+TGG | - | tig0006806:30918-30937 | None:intergenic | 45.0% | |
| AAGATCTAGGAGCTCGATGA+AGG | + | tig0006806:31069-31088 | Msa1344300:CDS | 45.0% | |
| ! | AAGCAAAAAGGTGCGTGTGT+TGG | + | tig0006806:31148-31167 | Msa1344300:intron | 45.0% |
| TCAGGAGCAGAATTTGAGCT+CGG | + | tig0006806:31454-31473 | Msa1344300:CDS | 45.0% | |
| ATAGACACCTTGTGGATCAG+AGG | - | tig0006806:31597-31616 | None:intergenic | 45.0% | |
| ! | CATTAGGGACTAGGCTTTGT+AGG | - | tig0006806:31795-31814 | None:intergenic | 45.0% |
| CTACAAAGCCTAGTCCCTAA+TGG | + | tig0006806:31793-31812 | Msa1344300:CDS | 45.0% | |
| ! | TTCTGAGCTCTGATGATCAC+TGG | + | tig0006806:32113-32132 | Msa1344300:CDS | 45.0% |
| TGTCCTGGCCATGATGTAGA+TGG | - | tig0006806:30731-30750 | None:intergenic | 50.0% | |
| TCTAGGAGCTCGATGAAGGT+AGG | + | tig0006806:31073-31092 | Msa1344300:intron | 50.0% | |
| AGGAAGTGACTTACTCCCAC+CGG | - | tig0006806:31220-31239 | None:intergenic | 50.0% | |
| GTTCAAAAGCAACGCTGACG+AGG | + | tig0006806:31415-31434 | Msa1344300:CDS | 50.0% | |
| CCTTGGTTCCATTAGGGACT+AGG | - | tig0006806:31804-31823 | None:intergenic | 50.0% | |
| CCTAGTCCCTAATGGAACCA+AGG | + | tig0006806:31801-31820 | Msa1344300:CDS | 50.0% | |
| GGATATCAGCACCATGCTTG+AGG | + | tig0006806:31911-31930 | Msa1344300:CDS | 50.0% | |
| TTGCACAGCTTCCTCAAGCA+TGG | - | tig0006806:31925-31944 | None:intergenic | 50.0% | |
| TGTCCTGGCCATGATGTAGA+TGG | - | tig0006806:30731-30750 | None:intergenic | 50.0% | |
| TCTAGGAGCTCGATGAAGGT+AGG | + | tig0006806:31073-31092 | Msa1344300:intron | 50.0% | |
| AGGAAGTGACTTACTCCCAC+CGG | - | tig0006806:31220-31239 | None:intergenic | 50.0% | |
| GTTCAAAAGCAACGCTGACG+AGG | + | tig0006806:31415-31434 | Msa1344300:CDS | 50.0% | |
| CCTTGGTTCCATTAGGGACT+AGG | - | tig0006806:31804-31823 | None:intergenic | 50.0% | |
| CCTAGTCCCTAATGGAACCA+AGG | + | tig0006806:31801-31820 | Msa1344300:CDS | 50.0% | |
| GGATATCAGCACCATGCTTG+AGG | + | tig0006806:31911-31930 | Msa1344300:CDS | 50.0% | |
| TTGCACAGCTTCCTCAAGCA+TGG | - | tig0006806:31925-31944 | None:intergenic | 50.0% | |
| GGAGCAGAATTTGAGCTCGG+AGG | + | tig0006806:31457-31476 | Msa1344300:CDS | 55.0% | |
| GGTTCTGCCTCTGATCCACA+AGG | + | tig0006806:31587-31606 | Msa1344300:CDS | 55.0% | |
| GGAGCAGAATTTGAGCTCGG+AGG | + | tig0006806:31457-31476 | Msa1344300:CDS | 55.0% | |
| GGTTCTGCCTCTGATCCACA+AGG | + | tig0006806:31587-31606 | Msa1344300:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0006806 | gene | 30587 | 32210 | 30587 | ID=Msa1344300;Name=Msa1344300 |
| tig0006806 | mRNA | 30587 | 32210 | 30587 | ID=Msa1344300-mRNA-1;Parent=Msa1344300;Name=Msa1344300-mRNA-1;_AED=0.36;_eAED=0.36;_QI=0|0|0|1|1|1|5|0|330 |
| tig0006806 | exon | 30587 | 31090 | 30587 | ID=Msa1344300-mRNA-1:exon:4479;Parent=Msa1344300-mRNA-1 |
| tig0006806 | exon | 31365 | 31622 | 31365 | ID=Msa1344300-mRNA-1:exon:4480;Parent=Msa1344300-mRNA-1 |
| tig0006806 | exon | 31757 | 31822 | 31757 | ID=Msa1344300-mRNA-1:exon:4481;Parent=Msa1344300-mRNA-1 |
| tig0006806 | exon | 31909 | 31974 | 31909 | ID=Msa1344300-mRNA-1:exon:4482;Parent=Msa1344300-mRNA-1 |
| tig0006806 | exon | 32112 | 32210 | 32112 | ID=Msa1344300-mRNA-1:exon:4483;Parent=Msa1344300-mRNA-1 |
| tig0006806 | CDS | 30587 | 31090 | 30587 | ID=Msa1344300-mRNA-1:cds;Parent=Msa1344300-mRNA-1 |
| tig0006806 | CDS | 31365 | 31622 | 31365 | ID=Msa1344300-mRNA-1:cds;Parent=Msa1344300-mRNA-1 |
| tig0006806 | CDS | 31757 | 31822 | 31757 | ID=Msa1344300-mRNA-1:cds;Parent=Msa1344300-mRNA-1 |
| tig0006806 | CDS | 31909 | 31974 | 31909 | ID=Msa1344300-mRNA-1:cds;Parent=Msa1344300-mRNA-1 |
| tig0006806 | CDS | 32112 | 32210 | 32112 | ID=Msa1344300-mRNA-1:cds;Parent=Msa1344300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
