Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1344580 | KEH43987.1 | 91.463 | 164 | 14 | 0 | 1 | 164 | 1 | 164 | 1.44e-106 | 313 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1344580 | sp|O48686|SNL3_ARATH | 42.581 | 155 | 76 | 4 | 13 | 157 | 11 | 162 | 1.07e-29 | 118 |
Msa1344580 | sp|O48686|SNL3_ARATH | 55.882 | 68 | 30 | 0 | 96 | 163 | 15 | 82 | 9.20e-17 | 81.3 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1344580 | A0A072VQC1 | 91.463 | 164 | 14 | 0 | 1 | 164 | 1 | 164 | 6.90e-107 | 313 |
Gene ID | Type | Classification |
---|---|---|
Msa1344580 | TR | Others |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1344580 | MtrunA17_Chr1g0206771 | 91.463 | 164 | 14 | 0 | 1 | 164 | 1 | 164 | 1.33e-110 | 313 |
Msa1344580 | MtrunA17_Chr1g0206781 | 49.600 | 125 | 44 | 1 | 6 | 130 | 1 | 106 | 4.68e-33 | 114 |
Msa1344580 | MtrunA17_Chr1g0206781 | 61.905 | 84 | 31 | 1 | 94 | 177 | 10 | 92 | 3.23e-27 | 99.8 |
Msa1344580 | MtrunA17_Chr3g0077911 | 45.806 | 155 | 74 | 3 | 13 | 160 | 5 | 156 | 1.69e-32 | 114 |
Msa1344580 | MtrunA17_Chr3g0077911 | 46.835 | 79 | 38 | 2 | 96 | 173 | 9 | 84 | 1.98e-12 | 62.4 |
Msa1344580 | MtrunA17_Chr5g0415031 | 44.737 | 152 | 77 | 2 | 13 | 157 | 40 | 191 | 5.48e-32 | 121 |
Msa1344580 | MtrunA17_Chr5g0415031 | 51.351 | 74 | 36 | 0 | 96 | 169 | 44 | 117 | 5.92e-17 | 78.6 |
Msa1344580 | MtrunA17_Chr3g0077861 | 47.742 | 155 | 71 | 4 | 13 | 160 | 5 | 156 | 5.73e-32 | 113 |
Msa1344580 | MtrunA17_Chr1g0205821 | 38.372 | 172 | 98 | 2 | 5 | 168 | 2 | 173 | 2.57e-31 | 112 |
Msa1344580 | MtrunA17_Chr1g0205821 | 40.964 | 83 | 49 | 0 | 92 | 174 | 10 | 92 | 2.84e-12 | 62.4 |
Msa1344580 | MtrunA17_Chr3g0077891 | 40.476 | 168 | 75 | 3 | 17 | 165 | 9 | 170 | 1.48e-30 | 110 |
Msa1344580 | MtrunA17_Chr3g0077891 | 51.389 | 72 | 34 | 1 | 9 | 79 | 92 | 163 | 5.45e-16 | 72.4 |
Msa1344580 | MtrunA17_Chr3g0077941 | 41.104 | 163 | 84 | 2 | 13 | 163 | 5 | 167 | 7.96e-30 | 108 |
Msa1344580 | MtrunA17_Chr8g0364231 | 41.509 | 159 | 86 | 2 | 6 | 157 | 32 | 190 | 1.25e-29 | 115 |
Msa1344580 | MtrunA17_Chr8g0364231 | 55.405 | 74 | 33 | 0 | 96 | 169 | 43 | 116 | 4.00e-19 | 84.7 |
Msa1344580 | MtrunA17_Chr1g0205831 | 37.500 | 160 | 91 | 2 | 16 | 174 | 2 | 153 | 2.25e-29 | 107 |
Msa1344580 | MtrunA17_Chr6g0452001 | 42.208 | 154 | 78 | 3 | 13 | 157 | 60 | 211 | 5.82e-29 | 113 |
Msa1344580 | MtrunA17_Chr6g0452001 | 50.667 | 75 | 37 | 0 | 96 | 170 | 64 | 138 | 3.46e-17 | 79.0 |
Msa1344580 | MtrunA17_Chr4g0075861 | 41.139 | 158 | 79 | 2 | 15 | 163 | 88 | 240 | 2.54e-28 | 108 |
Msa1344580 | MtrunA17_Chr4g0075861 | 42.667 | 150 | 78 | 3 | 17 | 163 | 13 | 157 | 3.02e-24 | 97.8 |
Msa1344580 | MtrunA17_Chr4g0075861 | 41.176 | 85 | 47 | 1 | 91 | 175 | 8 | 89 | 4.84e-11 | 60.8 |
Msa1344580 | MtrunA17_Chr4g0075971 | 40.506 | 158 | 80 | 2 | 15 | 163 | 88 | 240 | 2.72e-27 | 107 |
Msa1344580 | MtrunA17_Chr4g0075971 | 42.857 | 154 | 76 | 3 | 15 | 163 | 11 | 157 | 6.25e-25 | 101 |
Msa1344580 | MtrunA17_Chr4g0075971 | 43.038 | 79 | 42 | 1 | 91 | 169 | 8 | 83 | 1.90e-11 | 62.4 |
Msa1344580 | MtrunA17_Chr3g0077881 | 40.854 | 164 | 84 | 4 | 13 | 163 | 5 | 168 | 4.92e-27 | 101 |
Msa1344580 | MtrunA17_Chr3g0077881 | 45.783 | 83 | 44 | 1 | 96 | 177 | 9 | 91 | 8.37e-13 | 63.9 |
Msa1344580 | MtrunA17_Chr6g0452021 | 41.333 | 150 | 83 | 1 | 13 | 157 | 40 | 189 | 2.92e-26 | 104 |
Msa1344580 | MtrunA17_Chr1g0209201 | 44.961 | 129 | 64 | 3 | 19 | 145 | 19 | 142 | 8.57e-26 | 97.1 |
Msa1344580 | MtrunA17_Chr1g0209201 | 50.685 | 73 | 35 | 1 | 92 | 164 | 13 | 84 | 2.19e-17 | 75.1 |
Msa1344580 | MtrunA17_Chr1g0205861 | 50.617 | 81 | 40 | 0 | 1 | 81 | 1 | 81 | 9.80e-21 | 83.2 |
Msa1344580 | MtrunA17_Chr1g0205861 | 39.806 | 103 | 56 | 1 | 92 | 194 | 13 | 109 | 2.40e-17 | 74.3 |
Msa1344580 | MtrunA17_Chr7g0218891 | 36.129 | 155 | 90 | 3 | 17 | 162 | 100 | 254 | 1.08e-20 | 86.7 |
Msa1344580 | MtrunA17_Chr7g0218891 | 33.516 | 182 | 109 | 5 | 1 | 173 | 1 | 179 | 7.73e-20 | 84.3 |
Msa1344580 | MtrunA17_Chr7g0256011 | 48.193 | 83 | 43 | 0 | 1 | 83 | 1 | 83 | 1.55e-19 | 80.1 |
Msa1344580 | MtrunA17_Chr1g0205811 | 52.055 | 73 | 35 | 0 | 16 | 88 | 14 | 86 | 1.35e-18 | 77.8 |
Msa1344580 | MtrunA17_Chr1g0205811 | 48.387 | 93 | 44 | 2 | 95 | 184 | 14 | 105 | 1.94e-17 | 74.7 |
Msa1344580 | MtrunA17_Chr8g0364021 | 48.611 | 72 | 37 | 0 | 9 | 80 | 37 | 108 | 2.06e-15 | 72.0 |
Msa1344580 | MtrunA17_Chr8g0364021 | 40.816 | 98 | 54 | 1 | 96 | 193 | 45 | 138 | 2.00e-12 | 63.9 |
Msa1344580 | MtrunA17_Chr1g0205801 | 43.836 | 73 | 41 | 0 | 16 | 88 | 12 | 84 | 5.49e-14 | 65.5 |
Msa1344580 | MtrunA17_Chr1g0205801 | 45.000 | 80 | 44 | 0 | 95 | 174 | 12 | 91 | 1.24e-12 | 61.6 |
Msa1344580 | MtrunA17_Chr2g0328701 | 41.584 | 101 | 56 | 1 | 69 | 169 | 3 | 100 | 5.57e-14 | 65.9 |
Msa1344580 | MtrunA17_Chr2g0328701 | 40.777 | 103 | 53 | 3 | 15 | 114 | 28 | 125 | 6.26e-13 | 62.8 |
Msa1344580 | MtrunA17_Chr7g0218911 | 49.180 | 61 | 31 | 0 | 20 | 80 | 2 | 62 | 7.69e-14 | 65.1 |
Msa1344580 | MtrunA17_Chr3g0077811 | 46.479 | 71 | 37 | 1 | 93 | 162 | 11 | 81 | 2.79e-12 | 61.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1344580 | AT1G24190.1 | 42.581 | 155 | 76 | 4 | 13 | 157 | 11 | 162 | 1.09e-30 | 118 |
Msa1344580 | AT1G24190.1 | 55.882 | 68 | 30 | 0 | 96 | 163 | 15 | 82 | 9.35e-18 | 81.3 |
Msa1344580 | AT1G24190.3 | 42.581 | 155 | 76 | 4 | 13 | 157 | 11 | 162 | 1.14e-30 | 118 |
Msa1344580 | AT1G24190.3 | 55.882 | 68 | 30 | 0 | 96 | 163 | 15 | 82 | 9.36e-18 | 81.3 |
Msa1344580 | AT1G24190.2 | 42.581 | 155 | 76 | 4 | 13 | 157 | 11 | 162 | 1.21e-30 | 118 |
Msa1344580 | AT1G24190.2 | 55.882 | 68 | 30 | 0 | 96 | 163 | 15 | 82 | 9.62e-18 | 81.3 |
Msa1344580 | AT3G01320.1 | 42.384 | 151 | 81 | 2 | 13 | 157 | 54 | 204 | 2.62e-30 | 117 |
Msa1344580 | AT3G01320.1 | 55.405 | 74 | 33 | 0 | 96 | 169 | 58 | 131 | 2.27e-18 | 82.8 |
Msa1344580 | AT3G01320.2 | 42.384 | 151 | 81 | 2 | 13 | 157 | 54 | 204 | 3.21e-30 | 117 |
Msa1344580 | AT3G01320.2 | 55.405 | 74 | 33 | 0 | 96 | 169 | 58 | 131 | 2.38e-18 | 82.8 |
Msa1344580 | AT5G15020.1 | 42.105 | 152 | 79 | 2 | 13 | 157 | 49 | 198 | 7.21e-30 | 115 |
Msa1344580 | AT5G15020.1 | 53.521 | 71 | 33 | 0 | 96 | 166 | 53 | 123 | 4.02e-17 | 79.3 |
Msa1344580 | AT5G15020.2 | 42.105 | 152 | 79 | 2 | 13 | 157 | 49 | 198 | 7.85e-30 | 115 |
Msa1344580 | AT5G15020.2 | 53.521 | 71 | 33 | 0 | 96 | 166 | 53 | 123 | 4.09e-17 | 79.3 |
Msa1344580 | AT1G24230.1 | 34.524 | 168 | 95 | 3 | 13 | 179 | 11 | 164 | 1.61e-29 | 109 |
Msa1344580 | AT1G24230.1 | 26.174 | 149 | 100 | 3 | 13 | 154 | 83 | 228 | 2.57e-13 | 66.6 |
Msa1344580 | AT1G70060.2 | 40.994 | 161 | 83 | 2 | 7 | 157 | 5 | 163 | 2.69e-29 | 114 |
Msa1344580 | AT1G70060.2 | 54.545 | 77 | 35 | 0 | 96 | 172 | 15 | 91 | 2.57e-18 | 82.8 |
Msa1344580 | AT1G70060.1 | 40.994 | 161 | 83 | 2 | 7 | 157 | 5 | 163 | 2.69e-29 | 114 |
Msa1344580 | AT1G70060.1 | 54.545 | 77 | 35 | 0 | 96 | 172 | 15 | 91 | 2.57e-18 | 82.8 |
Msa1344580 | AT1G24200.1 | 37.333 | 150 | 90 | 1 | 12 | 157 | 10 | 159 | 3.31e-28 | 105 |
Msa1344580 | AT1G24200.1 | 50.000 | 68 | 34 | 0 | 96 | 163 | 15 | 82 | 1.41e-14 | 69.3 |
Msa1344580 | AT1G27260.1 | 36.538 | 156 | 84 | 2 | 14 | 156 | 1 | 154 | 9.16e-27 | 102 |
Msa1344580 | AT1G10450.3 | 39.264 | 163 | 83 | 3 | 7 | 157 | 72 | 230 | 1.54e-25 | 103 |
Msa1344580 | AT1G10450.3 | 48.529 | 68 | 35 | 0 | 96 | 163 | 85 | 152 | 1.25e-12 | 66.2 |
Msa1344580 | AT1G10450.2 | 39.264 | 163 | 83 | 3 | 7 | 157 | 21 | 179 | 1.61e-25 | 103 |
Msa1344580 | AT1G10450.2 | 48.529 | 68 | 35 | 0 | 96 | 163 | 34 | 101 | 1.44e-12 | 65.9 |
Msa1344580 | AT1G10450.1 | 39.264 | 163 | 83 | 3 | 7 | 157 | 21 | 179 | 1.61e-25 | 103 |
Msa1344580 | AT1G10450.1 | 48.529 | 68 | 35 | 0 | 96 | 163 | 34 | 101 | 1.44e-12 | 65.9 |
Msa1344580 | AT1G59890.4 | 41.060 | 151 | 74 | 3 | 17 | 157 | 46 | 191 | 3.95e-25 | 102 |
Msa1344580 | AT1G59890.4 | 50.000 | 74 | 37 | 0 | 96 | 169 | 46 | 119 | 3.69e-15 | 73.6 |
Msa1344580 | AT1G59890.3 | 41.060 | 151 | 74 | 3 | 17 | 157 | 46 | 191 | 3.95e-25 | 102 |
Msa1344580 | AT1G59890.3 | 50.000 | 74 | 37 | 0 | 96 | 169 | 46 | 119 | 3.49e-15 | 73.6 |
Msa1344580 | AT1G59890.2 | 41.060 | 151 | 74 | 3 | 17 | 157 | 46 | 191 | 4.23e-25 | 102 |
Msa1344580 | AT1G59890.2 | 50.000 | 74 | 37 | 0 | 96 | 169 | 46 | 119 | 3.56e-15 | 73.6 |
Msa1344580 | AT1G59890.1 | 41.060 | 151 | 74 | 3 | 17 | 157 | 46 | 191 | 4.27e-25 | 102 |
Msa1344580 | AT1G59890.1 | 50.000 | 74 | 37 | 0 | 96 | 169 | 46 | 119 | 3.62e-15 | 73.6 |
Msa1344580 | AT1G70030.1 | 35.762 | 151 | 90 | 2 | 13 | 157 | 8 | 157 | 5.10e-23 | 90.5 |
Msa1344580 | AT1G70030.1 | 44.118 | 68 | 38 | 0 | 99 | 166 | 15 | 82 | 4.57e-13 | 64.3 |
Msa1344580 | AT1G24250.1 | 29.843 | 191 | 105 | 3 | 1 | 164 | 1 | 189 | 6.89e-21 | 87.4 |
Msa1344580 | AT1G23810.1 | 32.184 | 174 | 102 | 3 | 7 | 164 | 5 | 178 | 1.32e-20 | 86.3 |
Msa1344580 | AT5G15025.1 | 55.882 | 68 | 30 | 0 | 13 | 80 | 44 | 111 | 2.11e-19 | 80.1 |
Msa1344580 | AT5G15025.1 | 42.857 | 77 | 44 | 0 | 94 | 170 | 46 | 122 | 3.69e-14 | 66.6 |
Msa1344580 | AT4G12020.2 | 59.701 | 67 | 26 | 1 | 13 | 79 | 305 | 370 | 2.57e-18 | 82.8 |
Msa1344580 | AT4G12020.2 | 46.667 | 75 | 39 | 1 | 95 | 169 | 308 | 381 | 4.59e-15 | 73.2 |
Msa1344580 | AT4G12020.4 | 59.701 | 67 | 26 | 1 | 13 | 79 | 305 | 370 | 2.60e-18 | 82.8 |
Msa1344580 | AT4G12020.4 | 46.667 | 75 | 39 | 1 | 95 | 169 | 308 | 381 | 4.63e-15 | 73.2 |
Msa1344580 | AT4G12020.1 | 59.701 | 67 | 26 | 1 | 13 | 79 | 305 | 370 | 2.61e-18 | 82.8 |
Msa1344580 | AT4G12020.1 | 46.667 | 75 | 39 | 1 | 95 | 169 | 308 | 381 | 4.62e-15 | 73.2 |
Msa1344580 | AT4G12020.9 | 59.701 | 67 | 26 | 1 | 13 | 79 | 305 | 370 | 2.61e-18 | 82.8 |
Msa1344580 | AT4G12020.9 | 46.667 | 75 | 39 | 1 | 95 | 169 | 308 | 381 | 4.62e-15 | 73.2 |
Msa1344580 | AT4G12020.7 | 59.701 | 67 | 26 | 1 | 13 | 79 | 305 | 370 | 2.82e-18 | 82.8 |
Msa1344580 | AT4G12020.7 | 46.667 | 75 | 39 | 1 | 95 | 169 | 308 | 381 | 4.94e-15 | 73.2 |
Msa1344580 | AT4G12020.5 | 59.701 | 67 | 26 | 1 | 13 | 79 | 238 | 303 | 2.82e-18 | 82.8 |
Msa1344580 | AT4G12020.5 | 46.667 | 75 | 39 | 1 | 95 | 169 | 241 | 314 | 4.94e-15 | 73.2 |
Msa1344580 | AT4G12020.3 | 59.701 | 67 | 26 | 1 | 13 | 79 | 305 | 370 | 3.09e-18 | 82.4 |
Msa1344580 | AT4G12020.3 | 46.667 | 75 | 39 | 1 | 95 | 169 | 308 | 381 | 5.25e-15 | 73.2 |
Msa1344580 | AT4G12020.10 | 59.701 | 67 | 26 | 1 | 13 | 79 | 305 | 370 | 3.24e-18 | 82.4 |
Msa1344580 | AT4G12020.10 | 46.667 | 75 | 39 | 1 | 95 | 169 | 308 | 381 | 5.61e-15 | 73.2 |
Msa1344580 | AT4G12020.6 | 59.701 | 67 | 26 | 1 | 13 | 79 | 305 | 370 | 3.51e-18 | 82.4 |
Msa1344580 | AT4G12020.6 | 46.667 | 75 | 39 | 1 | 95 | 169 | 308 | 381 | 5.97e-15 | 73.2 |
Msa1344580 | AT4G12020.8 | 59.701 | 67 | 26 | 1 | 13 | 79 | 305 | 370 | 3.51e-18 | 82.4 |
Msa1344580 | AT4G12020.8 | 46.667 | 75 | 39 | 1 | 95 | 169 | 308 | 381 | 5.97e-15 | 73.2 |
Msa1344580 | AT5G15040.1 | 52.174 | 69 | 33 | 0 | 14 | 82 | 1 | 69 | 4.06e-18 | 75.9 |
Msa1344580 | AT5G15040.1 | 43.590 | 78 | 44 | 0 | 93 | 170 | 1 | 78 | 5.63e-13 | 62.4 |
Msa1344580 | AT5G15040.3 | 52.174 | 69 | 33 | 0 | 14 | 82 | 1 | 69 | 4.06e-18 | 75.9 |
Msa1344580 | AT5G15040.3 | 43.590 | 78 | 44 | 0 | 93 | 170 | 1 | 78 | 5.63e-13 | 62.4 |
Msa1344580 | AT5G15040.2 | 52.174 | 69 | 33 | 0 | 14 | 82 | 1 | 69 | 4.06e-18 | 75.9 |
Msa1344580 | AT5G15040.2 | 43.590 | 78 | 44 | 0 | 93 | 170 | 1 | 78 | 5.63e-13 | 62.4 |
Msa1344580 | AT4G12020.11 | 59.701 | 67 | 26 | 1 | 13 | 79 | 305 | 370 | 4.99e-18 | 82.0 |
Msa1344580 | AT4G12020.11 | 46.667 | 75 | 39 | 1 | 95 | 169 | 308 | 381 | 8.15e-15 | 72.4 |
Msa1344580 | AT1G70030.2 | 36.000 | 125 | 72 | 2 | 1 | 117 | 7 | 131 | 2.40e-16 | 72.8 |
Msa1344580 | AT1G70030.2 | 44.118 | 68 | 38 | 0 | 99 | 166 | 26 | 93 | 2.26e-13 | 64.7 |
Msa1344580 | AT1G27250.1 | 43.750 | 80 | 43 | 1 | 2 | 79 | 5 | 84 | 4.17e-16 | 72.0 |
Msa1344580 | AT1G27250.1 | 42.857 | 77 | 44 | 0 | 86 | 162 | 12 | 88 | 9.31e-13 | 63.2 |
Msa1344580 | AT1G70030.3 | 38.384 | 99 | 55 | 1 | 13 | 105 | 19 | 117 | 1.32e-15 | 70.5 |
Msa1344580 | AT1G70030.3 | 44.118 | 68 | 38 | 0 | 99 | 166 | 26 | 93 | 1.38e-13 | 65.1 |
Msa1344580 | AT1G27220.1 | 46.575 | 73 | 37 | 1 | 9 | 79 | 5 | 77 | 3.82e-15 | 70.5 |
Msa1344580 | AT1G27220.1 | 42.308 | 78 | 45 | 0 | 86 | 163 | 5 | 82 | 3.17e-13 | 65.5 |
Msa1344580 | AT1G27270.1 | 33.537 | 164 | 85 | 3 | 15 | 156 | 13 | 174 | 1.16e-14 | 70.5 |
Msa1344580 | AT1G27280.1 | 29.371 | 143 | 92 | 1 | 28 | 161 | 5 | 147 | 2.08e-13 | 66.6 |
Msa1344580 | AT1G27280.1 | 39.394 | 66 | 40 | 0 | 13 | 78 | 78 | 143 | 3.54e-11 | 60.5 |
Msa1344580 | AT1G27240.1 | 39.437 | 71 | 43 | 0 | 12 | 82 | 10 | 80 | 1.33e-12 | 63.9 |
Find 31 sgRNAs with CRISPR-Local
Find 34 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGAATTTGTGAAAGCTATTA+AGG | 0.207434 | tig0006809:+45809 | Msa1344580:CDS |
AGATTGAAGGATTTGTTTAA+AGG | 0.287517 | tig0006809:+45636 | Msa1344580:CDS |
TAATCAAACTTGCTCCCTTT+TGG | 0.325065 | tig0006809:-45696 | None:intergenic |
AAAGGGAGCAAGTTTGATTA+TGG | 0.329129 | tig0006809:+45699 | Msa1344580:CDS |
GTACTGATTTGATATTTCTT+TGG | 0.342104 | tig0006809:-45933 | None:intergenic |
AGAGTGAAGGAACTATTTAA+AGG | 0.356818 | tig0006809:+45873 | Msa1344580:CDS |
GATTGAAGGATTTGTTTAAA+GGG | 0.359025 | tig0006809:+45637 | Msa1344580:CDS |
AAATGTTATGATGGATTTCA+AGG | 0.397261 | tig0006809:+45581 | Msa1344580:CDS |
GCTTCTTCCAACACTCCAAA+TGG | 0.411742 | tig0006809:-45729 | None:intergenic |
GGGCATACAAATTTAACGTT+GGG | 0.437947 | tig0006809:+45894 | Msa1344580:CDS |
GATTATGGCATAGATCCATT+TGG | 0.439528 | tig0006809:+45714 | Msa1344580:CDS |
TTCAACATCTTCGTGCCAAA+AGG | 0.444915 | tig0006809:+45681 | Msa1344580:CDS |
GAGTGAAGGAACTATTTAAA+GGG | 0.467701 | tig0006809:+45874 | Msa1344580:CDS |
CATAGATCCATTTGGAGTGT+TGG | 0.482305 | tig0006809:+45722 | Msa1344580:CDS |
TATCAAATCAGTACTGATGA+TGG | 0.498943 | tig0006809:+45942 | Msa1344580:CDS |
TCAACATCTTCGTGCCAAAA+GGG | 0.534332 | tig0006809:+45682 | Msa1344580:CDS |
TCCATGAGACATGTTATCGC+TGG | 0.536428 | tig0006809:-45469 | None:intergenic |
TGGTGTCATAGCAAGATTGA+AGG | 0.543726 | tig0006809:+45623 | Msa1344580:CDS |
AGGGCATACAAATTTAACGT+TGG | 0.547701 | tig0006809:+45893 | Msa1344580:CDS |
TCCAGCGATAACATGTCTCA+TGG | 0.552003 | tig0006809:+45468 | Msa1344580:CDS |
AGTTGAGTTTCAATATGAGA+GGG | 0.554210 | tig0006809:+45776 | Msa1344580:CDS |
TGACGTAGAAGCAGAAGACA+TGG | 0.554579 | tig0006809:+46019 | Msa1344580:CDS |
GCTATTGCTTCTTCCATCGT+GGG | 0.554911 | tig0006809:-45498 | None:intergenic |
GAAAGCTATTAAGGATTGCA+AGG | 0.560574 | tig0006809:+45818 | Msa1344580:CDS |
TGCTATTGCTTCTTCCATCG+TGG | 0.562428 | tig0006809:-45499 | None:intergenic |
AAGTTGAGTTTCAATATGAG+AGG | 0.581901 | tig0006809:+45775 | Msa1344580:CDS |
AGAAGCAGAAGACATGGAAG+TGG | 0.582532 | tig0006809:+46025 | Msa1344580:CDS |
ATGTCTCGCGAAAAGAGTGA+AGG | 0.647795 | tig0006809:+45860 | Msa1344580:CDS |
GCTATGAAAATTGATACAAG+TGG | 0.667045 | tig0006809:+45603 | Msa1344580:CDS |
AGAAGCAATAGCATATGTCG+AGG | 0.681954 | tig0006809:+45509 | Msa1344580:CDS |
TCATGGAGAAGTTCCCACGA+TGG | 0.689488 | tig0006809:+45485 | Msa1344580:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TGAATTTTTAAATGTTATGA+TGG | + | tig0006809:45572-45591 | Msa1344580:CDS | 15.0% |
!!! | AAATGTTATGATGGATTTCA+AGG | + | tig0006809:45581-45600 | Msa1344580:CDS | 25.0% |
!! | AGATTGAAGGATTTGTTTAA+AGG | + | tig0006809:45636-45655 | Msa1344580:CDS | 25.0% |
!! | GATTGAAGGATTTGTTTAAA+GGG | + | tig0006809:45637-45656 | Msa1344580:CDS | 25.0% |
! | TGAATTTGTGAAAGCTATTA+AGG | + | tig0006809:45809-45828 | Msa1344580:CDS | 25.0% |
!!! | GTACTGATTTGATATTTCTT+TGG | - | tig0006809:45936-45955 | None:intergenic | 25.0% |
GCTATGAAAATTGATACAAG+TGG | + | tig0006809:45603-45622 | Msa1344580:CDS | 30.0% | |
!! | GGGCACACAAATTTAATTTT+AGG | + | tig0006809:45657-45676 | Msa1344580:CDS | 30.0% |
AAGTTGAGTTTCAATATGAG+AGG | + | tig0006809:45775-45794 | Msa1344580:CDS | 30.0% | |
AGTTGAGTTTCAATATGAGA+GGG | + | tig0006809:45776-45795 | Msa1344580:CDS | 30.0% | |
AGAGTGAAGGAACTATTTAA+AGG | + | tig0006809:45873-45892 | Msa1344580:CDS | 30.0% | |
GAGTGAAGGAACTATTTAAA+GGG | + | tig0006809:45874-45893 | Msa1344580:CDS | 30.0% | |
!! | TATCAAATCAGTACTGATGA+TGG | + | tig0006809:45942-45961 | Msa1344580:CDS | 30.0% |
!! | TAATCAAACTTGCTCCCTTT+TGG | - | tig0006809:45699-45718 | None:intergenic | 35.0% |
AAAGGGAGCAAGTTTGATTA+TGG | + | tig0006809:45699-45718 | Msa1344580:CDS | 35.0% | |
GATTATGGCATAGATCCATT+TGG | + | tig0006809:45714-45733 | Msa1344580:CDS | 35.0% | |
! | GAAACTCAACTTTTACTGCA+TGG | - | tig0006809:45767-45786 | None:intergenic | 35.0% |
GAAAGCTATTAAGGATTGCA+AGG | + | tig0006809:45818-45837 | Msa1344580:CDS | 35.0% | |
AGGGCATACAAATTTAACGT+TGG | + | tig0006809:45893-45912 | Msa1344580:CDS | 35.0% | |
GGGCATACAAATTTAACGTT+GGG | + | tig0006809:45894-45913 | Msa1344580:CDS | 35.0% | |
AGAAGCAATAGCATATGTCG+AGG | + | tig0006809:45509-45528 | Msa1344580:CDS | 40.0% | |
!! | TGGTGTCATAGCAAGATTGA+AGG | + | tig0006809:45623-45642 | Msa1344580:CDS | 40.0% |
TTCAACATCTTCGTGCCAAA+AGG | + | tig0006809:45681-45700 | Msa1344580:CDS | 40.0% | |
TCAACATCTTCGTGCCAAAA+GGG | + | tig0006809:45682-45701 | Msa1344580:CDS | 40.0% | |
! | CATAGATCCATTTGGAGTGT+TGG | + | tig0006809:45722-45741 | Msa1344580:CDS | 40.0% |
TCCAGCGATAACATGTCTCA+TGG | + | tig0006809:45468-45487 | Msa1344580:CDS | 45.0% | |
TCCATGAGACATGTTATCGC+TGG | - | tig0006809:45472-45491 | None:intergenic | 45.0% | |
GCTATTGCTTCTTCCATCGT+GGG | - | tig0006809:45501-45520 | None:intergenic | 45.0% | |
TGCTATTGCTTCTTCCATCG+TGG | - | tig0006809:45502-45521 | None:intergenic | 45.0% | |
GCTTCTTCCAACACTCCAAA+TGG | - | tig0006809:45732-45751 | None:intergenic | 45.0% | |
ATGTCTCGCGAAAAGAGTGA+AGG | + | tig0006809:45860-45879 | Msa1344580:CDS | 45.0% | |
TGACGTAGAAGCAGAAGACA+TGG | + | tig0006809:46019-46038 | Msa1344580:CDS | 45.0% | |
AGAAGCAGAAGACATGGAAG+TGG | + | tig0006809:46025-46044 | Msa1344580:CDS | 45.0% | |
TCATGGAGAAGTTCCCACGA+TGG | + | tig0006809:45485-45504 | Msa1344580:CDS | 50.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
tig0006809 | gene | 45465 | 46052 | 45465 | ID=Msa1344580;Name=Msa1344580 |
tig0006809 | mRNA | 45465 | 46052 | 45465 | ID=Msa1344580-mRNA-1;Parent=Msa1344580;Name=Msa1344580-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|-1|0|1|-1|1|1|0|195 |
tig0006809 | exon | 45465 | 46052 | 45465 | ID=Msa1344580-mRNA-1:exon:4605;Parent=Msa1344580-mRNA-1 |
tig0006809 | CDS | 45465 | 46052 | 45465 | ID=Msa1344580-mRNA-1:cds;Parent=Msa1344580-mRNA-1 |
Gene Sequence |
Protein sequence |