Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1344780 | XP_039686869.1 | 66.463 | 164 | 35 | 1 | 13 | 156 | 78 | 241 | 4.68e-68 | 225 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1344780 | sp|Q9SWG3|FAR1_ARATH | 39.024 | 164 | 75 | 3 | 16 | 154 | 91 | 254 | 4.20e-30 | 120 |
| Msa1344780 | sp|Q9SWG3|FAR1_ARATH | 56.897 | 58 | 25 | 0 | 155 | 212 | 462 | 519 | 7.98e-13 | 70.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1344780 | A0A2K3NBU0 | 65.217 | 161 | 36 | 1 | 16 | 156 | 77 | 237 | 5.58e-65 | 223 |
| Msa1344780 | A0A2K3NBU0 | 79.310 | 58 | 12 | 0 | 155 | 212 | 443 | 500 | 5.96e-20 | 99.0 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1344780 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1344780 | MtrunA17_Chr2g0329031 | 42.857 | 154 | 73 | 3 | 16 | 154 | 54 | 207 | 7.32e-29 | 114 |
| Msa1344780 | MtrunA17_Chr2g0329031 | 42.623 | 61 | 35 | 0 | 158 | 218 | 418 | 478 | 7.01e-13 | 67.4 |
| Msa1344780 | MtrunA17_Chr1g0207551 | 37.888 | 161 | 78 | 2 | 16 | 154 | 74 | 234 | 1.52e-27 | 110 |
| Msa1344780 | MtrunA17_Chr1g0207551 | 58.621 | 58 | 24 | 0 | 155 | 212 | 442 | 499 | 8.45e-15 | 73.2 |
| Msa1344780 | MtrunA17_Chr3g0080351 | 37.975 | 158 | 78 | 3 | 16 | 156 | 116 | 270 | 3.89e-27 | 108 |
| Msa1344780 | MtrunA17_Chr2g0296781 | 32.258 | 155 | 81 | 3 | 23 | 154 | 42 | 195 | 3.51e-19 | 85.9 |
| Msa1344780 | MtrunA17_Chr5g0448761 | 32.857 | 140 | 69 | 4 | 38 | 153 | 129 | 267 | 7.14e-18 | 82.0 |
| Msa1344780 | MtrunA17_Chr6g0477261 | 41.250 | 80 | 47 | 0 | 75 | 154 | 5 | 84 | 6.29e-16 | 76.3 |
| Msa1344780 | MtrunA17_Chr5g0441581 | 29.371 | 143 | 87 | 2 | 24 | 152 | 79 | 221 | 1.53e-14 | 72.4 |
| Msa1344780 | MtrunA17_Chr1g0202341 | 32.609 | 138 | 67 | 4 | 39 | 154 | 120 | 253 | 3.78e-11 | 62.4 |
| Msa1344780 | MtrunA17_Chr8g0363841 | 26.316 | 133 | 77 | 1 | 43 | 154 | 88 | 220 | 7.96e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1344780 | AT4G15090.1 | 39.024 | 164 | 75 | 3 | 16 | 154 | 91 | 254 | 4.27e-31 | 120 |
| Msa1344780 | AT4G15090.1 | 56.897 | 58 | 25 | 0 | 155 | 212 | 462 | 519 | 8.11e-14 | 70.5 |
| Msa1344780 | AT4G15090.5 | 39.024 | 164 | 75 | 3 | 16 | 154 | 91 | 254 | 4.27e-31 | 120 |
| Msa1344780 | AT4G15090.5 | 56.897 | 58 | 25 | 0 | 155 | 212 | 462 | 519 | 8.11e-14 | 70.5 |
| Msa1344780 | AT4G15090.3 | 39.024 | 164 | 75 | 3 | 16 | 154 | 91 | 254 | 4.27e-31 | 120 |
| Msa1344780 | AT4G15090.3 | 56.897 | 58 | 25 | 0 | 155 | 212 | 462 | 519 | 8.11e-14 | 70.5 |
| Msa1344780 | AT4G15090.2 | 39.024 | 164 | 75 | 3 | 16 | 154 | 91 | 254 | 4.27e-31 | 120 |
| Msa1344780 | AT4G15090.2 | 56.897 | 58 | 25 | 0 | 155 | 212 | 462 | 519 | 8.11e-14 | 70.5 |
| Msa1344780 | AT4G15090.4 | 39.024 | 164 | 75 | 3 | 16 | 154 | 91 | 254 | 4.27e-31 | 120 |
| Msa1344780 | AT4G15090.4 | 56.897 | 58 | 25 | 0 | 155 | 212 | 462 | 519 | 8.11e-14 | 70.5 |
| Msa1344780 | AT3G22170.2 | 37.975 | 158 | 79 | 3 | 16 | 156 | 110 | 265 | 1.11e-28 | 114 |
| Msa1344780 | AT3G22170.1 | 37.975 | 158 | 79 | 3 | 16 | 156 | 110 | 265 | 1.11e-28 | 114 |
| Msa1344780 | AT1G76320.2 | 33.854 | 192 | 90 | 4 | 16 | 170 | 37 | 228 | 5.61e-26 | 105 |
| Msa1344780 | AT1G76320.2 | 50.909 | 55 | 27 | 0 | 158 | 212 | 402 | 456 | 4.02e-13 | 68.6 |
| Msa1344780 | AT1G76320.1 | 33.854 | 192 | 90 | 4 | 16 | 170 | 37 | 228 | 5.67e-26 | 105 |
| Msa1344780 | AT1G76320.1 | 50.909 | 55 | 27 | 0 | 158 | 212 | 402 | 456 | 4.10e-13 | 68.6 |
| Msa1344780 | AT1G76320.4 | 33.854 | 192 | 90 | 4 | 16 | 170 | 37 | 228 | 5.67e-26 | 105 |
| Msa1344780 | AT1G76320.4 | 50.909 | 55 | 27 | 0 | 158 | 212 | 402 | 456 | 4.10e-13 | 68.6 |
| Msa1344780 | AT1G76320.3 | 35.948 | 153 | 82 | 2 | 16 | 152 | 37 | 189 | 6.49e-26 | 105 |
| Msa1344780 | AT1G76320.3 | 50.909 | 55 | 27 | 0 | 158 | 212 | 402 | 456 | 4.44e-13 | 68.2 |
| Msa1344780 | AT4G38180.1 | 31.298 | 131 | 68 | 2 | 38 | 147 | 142 | 271 | 2.01e-17 | 81.3 |
| Msa1344780 | AT2G32250.7 | 37.143 | 140 | 68 | 2 | 16 | 154 | 37 | 157 | 1.01e-16 | 79.0 |
| Msa1344780 | AT2G32250.8 | 37.143 | 140 | 68 | 2 | 16 | 154 | 37 | 157 | 1.07e-16 | 79.0 |
| Msa1344780 | AT2G32250.6 | 37.143 | 140 | 68 | 2 | 16 | 154 | 78 | 198 | 1.30e-16 | 79.0 |
| Msa1344780 | AT2G32250.1 | 37.143 | 140 | 68 | 2 | 16 | 154 | 78 | 198 | 1.30e-16 | 79.0 |
| Msa1344780 | AT2G32250.3 | 37.143 | 140 | 68 | 2 | 16 | 154 | 78 | 198 | 1.30e-16 | 79.0 |
| Msa1344780 | AT2G32250.5 | 37.143 | 140 | 68 | 2 | 16 | 154 | 78 | 198 | 1.32e-16 | 78.6 |
| Msa1344780 | AT2G32250.2 | 37.143 | 140 | 68 | 2 | 16 | 154 | 78 | 198 | 1.36e-16 | 78.6 |
| Msa1344780 | AT2G32250.4 | 37.143 | 140 | 68 | 2 | 16 | 154 | 78 | 198 | 1.36e-16 | 78.6 |
| Msa1344780 | AT4G19990.1 | 33.121 | 157 | 67 | 6 | 16 | 152 | 4 | 142 | 8.38e-14 | 70.5 |
| Msa1344780 | AT4G19990.3 | 33.121 | 157 | 67 | 6 | 16 | 152 | 61 | 199 | 8.63e-14 | 70.5 |
| Msa1344780 | AT4G19990.4 | 33.121 | 157 | 67 | 6 | 16 | 152 | 61 | 199 | 8.63e-14 | 70.5 |
| Msa1344780 | AT4G19990.5 | 33.121 | 157 | 67 | 6 | 16 | 152 | 61 | 199 | 9.85e-14 | 70.5 |
| Msa1344780 | AT4G19990.7 | 33.121 | 157 | 67 | 6 | 16 | 152 | 75 | 213 | 9.90e-14 | 70.5 |
| Msa1344780 | AT4G19990.6 | 33.121 | 157 | 67 | 6 | 16 | 152 | 61 | 199 | 1.26e-13 | 70.1 |
| Msa1344780 | AT4G19990.2 | 33.121 | 157 | 67 | 6 | 16 | 152 | 61 | 199 | 1.26e-13 | 70.1 |
Find 28 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAATATAAAGTTGCCTTGC+AGG | 0.266641 | tig0006887:+31996 | Msa1344780:CDS |
| AAATAAATTGCAATGGAAAA+TGG | 0.273253 | tig0006887:+30982 | Msa1344780:CDS |
| TTCATACCCTCCATGTTGTT+TGG | 0.327554 | tig0006887:-31162 | None:intergenic |
| CTCTTTATGCTAAATCTGTT+GGG | 0.330055 | tig0006887:+30843 | Msa1344780:CDS |
| AGGTAAGAAACTTACATTAA+AGG | 0.332905 | tig0006887:+31963 | Msa1344780:intron |
| TCTCTTTATGCTAAATCTGT+TGG | 0.349983 | tig0006887:+30842 | Msa1344780:CDS |
| TATGCTAAATCTGTTGGGTT+TGG | 0.363737 | tig0006887:+30848 | Msa1344780:CDS |
| TCTTATGCTTGCACAAGATA+TGG | 0.382444 | tig0006887:+30885 | Msa1344780:CDS |
| TAACCCACATCCTTGTTTGA+AGG | 0.485538 | tig0006887:+30932 | Msa1344780:CDS |
| TCCATGTTGTTTGGCCATTG+TGG | 0.507748 | tig0006887:-31153 | None:intergenic |
| CGCGTCAAAATAAATTGCAA+TGG | 0.516043 | tig0006887:+30975 | Msa1344780:CDS |
| TCTACCTTCAAACAAGGATG+TGG | 0.522851 | tig0006887:-30936 | None:intergenic |
| ACTTCATATGTATAAATCAC+TGG | 0.530885 | tig0006887:-32108 | None:intergenic |
| GGGAGATGCAACATCAATGT+TGG | 0.546622 | tig0006887:+31253 | Msa1344780:CDS |
| CGTCGTTTGACATTAGAGTC+GGG | 0.556413 | tig0006887:+31233 | Msa1344780:CDS |
| TCGTCGTTTGACATTAGAGT+CGG | 0.559689 | tig0006887:+31232 | Msa1344780:CDS |
| AAAGACTGTTGAGTTTCTTG+AGG | 0.562562 | tig0006887:+32164 | Msa1344780:CDS |
| TTGTTTGAAGGTAGATTGTG+AGG | 0.582052 | tig0006887:+30944 | Msa1344780:CDS |
| GCCACAATGGCCAAACAACA+TGG | 0.588315 | tig0006887:+31152 | Msa1344780:CDS |
| TGAAACTTTAGAACATGTTG+TGG | 0.604397 | tig0006887:+31109 | Msa1344780:CDS |
| CTACCTTCAAACAAGGATGT+GGG | 0.609045 | tig0006887:-30935 | None:intergenic |
| CATTAAAGATCACAATCATG+AGG | 0.619087 | tig0006887:+31019 | Msa1344780:CDS |
| CATGGAGGGTATGAAAACAT+TGG | 0.636187 | tig0006887:+31170 | Msa1344780:CDS |
| AGGATGTGGGTTATGTGCGG+TGG | 0.667999 | tig0006887:-30922 | None:intergenic |
| TCACAATCTACCTTCAAACA+AGG | 0.682122 | tig0006887:-30942 | None:intergenic |
| CAATGGCCAAACAACATGGA+GGG | 0.684081 | tig0006887:+31156 | Msa1344780:CDS |
| ACAATGGCCAAACAACATGG+AGG | 0.713875 | tig0006887:+31155 | Msa1344780:CDS |
| ACAAGGATGTGGGTTATGTG+CGG | 0.747780 | tig0006887:-30925 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTTATGCAATTGATT+TGG | + | tig0006887:31310-31329 | Msa1344780:CDS | 15.0% |
| !!! | ATTTTTTTATGCAATTGATT+TGG | + | tig0006887:31310-31329 | Msa1344780:CDS | 15.0% |
| !! | AAATAAATTGCAATGGAAAA+TGG | + | tig0006887:30982-31001 | Msa1344780:CDS | 20.0% |
| !! | TCAATTGCATAAAAAAATTG+AGG | - | tig0006887:31308-31327 | None:intergenic | 20.0% |
| !! | TGATTATTCACACAAATAAA+AGG | - | tig0006887:31464-31483 | None:intergenic | 20.0% |
| !!! | TATATGAAGGATACATTTTT+TGG | + | tig0006887:31883-31902 | Msa1344780:intron | 20.0% |
| !! | AAATAAATTGCAATGGAAAA+TGG | + | tig0006887:30982-31001 | Msa1344780:CDS | 20.0% |
| !! | TCAATTGCATAAAAAAATTG+AGG | - | tig0006887:31308-31327 | None:intergenic | 20.0% |
| !! | TGATTATTCACACAAATAAA+AGG | - | tig0006887:31464-31483 | None:intergenic | 20.0% |
| !!! | TATATGAAGGATACATTTTT+TGG | + | tig0006887:31883-31902 | Msa1344780:intron | 20.0% |
| ! | AGAGATGATTATCAAGAATT+TGG | + | tig0006887:31380-31399 | Msa1344780:intron | 25.0% |
| ! | TGAATAATCACTTTAAGTCA+AGG | + | tig0006887:31474-31493 | Msa1344780:intron | 25.0% |
| ! | ATCAGTTATTATTGCATTTG+AGG | - | tig0006887:31587-31606 | None:intergenic | 25.0% |
| ! | TCTTTGGCATATACTAATAA+AGG | + | tig0006887:31669-31688 | Msa1344780:intron | 25.0% |
| ! | GGCAACAATTTATAGATAAA+TGG | + | tig0006887:31776-31795 | Msa1344780:intron | 25.0% |
| ! | AATGTATCCTTCATATAAAC+AGG | - | tig0006887:31880-31899 | None:intergenic | 25.0% |
| ! | GAAAAAAGAATTAATGCTCT+CGG | - | tig0006887:31932-31951 | None:intergenic | 25.0% |
| !!! | TCTTTTTTCGACAAATATGT+AGG | + | tig0006887:31943-31962 | Msa1344780:intron | 25.0% |
| ! | AGGTAAGAAACTTACATTAA+AGG | + | tig0006887:31963-31982 | Msa1344780:intron | 25.0% |
| !!! | AACAAGCTGATTTTAATACA+TGG | + | tig0006887:32037-32056 | Msa1344780:CDS | 25.0% |
| ! | ACTTCATATGTATAAATCAC+TGG | - | tig0006887:32111-32130 | None:intergenic | 25.0% |
| ! | AGAGATGATTATCAAGAATT+TGG | + | tig0006887:31380-31399 | Msa1344780:intron | 25.0% |
| ! | TGAATAATCACTTTAAGTCA+AGG | + | tig0006887:31474-31493 | Msa1344780:intron | 25.0% |
| ! | ATCAGTTATTATTGCATTTG+AGG | - | tig0006887:31587-31606 | None:intergenic | 25.0% |
| ! | TCTTTGGCATATACTAATAA+AGG | + | tig0006887:31669-31688 | Msa1344780:intron | 25.0% |
| ! | GGCAACAATTTATAGATAAA+TGG | + | tig0006887:31776-31795 | Msa1344780:intron | 25.0% |
| ! | AATGTATCCTTCATATAAAC+AGG | - | tig0006887:31880-31899 | None:intergenic | 25.0% |
| ! | GAAAAAAGAATTAATGCTCT+CGG | - | tig0006887:31932-31951 | None:intergenic | 25.0% |
| !!! | TCTTTTTTCGACAAATATGT+AGG | + | tig0006887:31943-31962 | Msa1344780:intron | 25.0% |
| ! | AGGTAAGAAACTTACATTAA+AGG | + | tig0006887:31963-31982 | Msa1344780:intron | 25.0% |
| !!! | AACAAGCTGATTTTAATACA+TGG | + | tig0006887:32037-32056 | Msa1344780:CDS | 25.0% |
| ! | ACTTCATATGTATAAATCAC+TGG | - | tig0006887:32111-32130 | None:intergenic | 25.0% |
| TCTCTTTATGCTAAATCTGT+TGG | + | tig0006887:30842-30861 | Msa1344780:CDS | 30.0% | |
| CTCTTTATGCTAAATCTGTT+GGG | + | tig0006887:30843-30862 | Msa1344780:CDS | 30.0% | |
| CATTAAAGATCACAATCATG+AGG | + | tig0006887:31019-31038 | Msa1344780:CDS | 30.0% | |
| GGAAAATAATGTGCATATGT+TGG | - | tig0006887:31050-31069 | None:intergenic | 30.0% | |
| !! | TTATTGATTCTTCTATGGCA+AGG | - | tig0006887:31071-31090 | None:intergenic | 30.0% |
| !! | GAGACTTATTGATTCTTCTA+TGG | - | tig0006887:31076-31095 | None:intergenic | 30.0% |
| !! | TGAAACTTTAGAACATGTTG+TGG | + | tig0006887:31109-31128 | Msa1344780:CDS | 30.0% |
| ! | AACCAAAATTTTTGCCACAA+TGG | + | tig0006887:31139-31158 | Msa1344780:CDS | 30.0% |
| ! | ATCGTGTAAGAAACCTATTT+TGG | + | tig0006887:31342-31361 | Msa1344780:intron | 30.0% |
| ! | TCGTGTAAGAAACCTATTTT+GGG | + | tig0006887:31343-31362 | Msa1344780:intron | 30.0% |
| ACACAAATAAAAGGAGCAAA+TGG | - | tig0006887:31455-31474 | None:intergenic | 30.0% | |
| GTATATGCCAAAGACAAAAT+TGG | - | tig0006887:31663-31682 | None:intergenic | 30.0% | |
| GGTCATGTAATAAGTGAAAA+TGG | + | tig0006887:31706-31725 | Msa1344780:intron | 30.0% | |
| !!! | ATGAAGGATACATTTTTTGG+TGG | + | tig0006887:31886-31905 | Msa1344780:intron | 30.0% |
| AAAATATAAAGTTGCCTTGC+AGG | + | tig0006887:31996-32015 | Msa1344780:CDS | 30.0% | |
| !! | TGATTTTAATACATGGCACA+AGG | + | tig0006887:32044-32063 | Msa1344780:CDS | 30.0% |
| TCTCTTTATGCTAAATCTGT+TGG | + | tig0006887:30842-30861 | Msa1344780:CDS | 30.0% | |
| CTCTTTATGCTAAATCTGTT+GGG | + | tig0006887:30843-30862 | Msa1344780:CDS | 30.0% | |
| CATTAAAGATCACAATCATG+AGG | + | tig0006887:31019-31038 | Msa1344780:CDS | 30.0% | |
| GGAAAATAATGTGCATATGT+TGG | - | tig0006887:31050-31069 | None:intergenic | 30.0% | |
| !! | TTATTGATTCTTCTATGGCA+AGG | - | tig0006887:31071-31090 | None:intergenic | 30.0% |
| !! | GAGACTTATTGATTCTTCTA+TGG | - | tig0006887:31076-31095 | None:intergenic | 30.0% |
| !! | TGAAACTTTAGAACATGTTG+TGG | + | tig0006887:31109-31128 | Msa1344780:CDS | 30.0% |
| ! | AACCAAAATTTTTGCCACAA+TGG | + | tig0006887:31139-31158 | Msa1344780:CDS | 30.0% |
| ! | ATCGTGTAAGAAACCTATTT+TGG | + | tig0006887:31342-31361 | Msa1344780:intron | 30.0% |
| ! | TCGTGTAAGAAACCTATTTT+GGG | + | tig0006887:31343-31362 | Msa1344780:intron | 30.0% |
| ACACAAATAAAAGGAGCAAA+TGG | - | tig0006887:31455-31474 | None:intergenic | 30.0% | |
| GTATATGCCAAAGACAAAAT+TGG | - | tig0006887:31663-31682 | None:intergenic | 30.0% | |
| GGTCATGTAATAAGTGAAAA+TGG | + | tig0006887:31706-31725 | Msa1344780:intron | 30.0% | |
| !!! | ATGAAGGATACATTTTTTGG+TGG | + | tig0006887:31886-31905 | Msa1344780:intron | 30.0% |
| AAAATATAAAGTTGCCTTGC+AGG | + | tig0006887:31996-32015 | Msa1344780:CDS | 30.0% | |
| !! | TGATTTTAATACATGGCACA+AGG | + | tig0006887:32044-32063 | Msa1344780:CDS | 30.0% |
| TATGCTAAATCTGTTGGGTT+TGG | + | tig0006887:30848-30867 | Msa1344780:CDS | 35.0% | |
| TCTTATGCTTGCACAAGATA+TGG | + | tig0006887:30885-30904 | Msa1344780:CDS | 35.0% | |
| TCACAATCTACCTTCAAACA+AGG | - | tig0006887:30945-30964 | None:intergenic | 35.0% | |
| TTGTTTGAAGGTAGATTGTG+AGG | + | tig0006887:30944-30963 | Msa1344780:CDS | 35.0% | |
| !!! | ATTTATTTTGACGCGTAAGC+TGG | - | tig0006887:30970-30989 | None:intergenic | 35.0% |
| CGCGTCAAAATAAATTGCAA+TGG | + | tig0006887:30975-30994 | Msa1344780:CDS | 35.0% | |
| !! | TGTAAGAAACCTATTTTGGG+TGG | + | tig0006887:31346-31365 | Msa1344780:intron | 35.0% |
| ! | ATTTTGCATCCACCCAAAAT+AGG | - | tig0006887:31358-31377 | None:intergenic | 35.0% |
| CACTTTAAGTCAAGGTTACT+TGG | + | tig0006887:31482-31501 | Msa1344780:intron | 35.0% | |
| AGACCTCAAATACTTTCACT+TGG | + | tig0006887:31525-31544 | Msa1344780:intron | 35.0% | |
| !! | CAACCAAGTGAAAGTATTTG+AGG | - | tig0006887:31531-31550 | None:intergenic | 35.0% |
| !! | TCACTTGGTTGATGAAAACA+TGG | + | tig0006887:31540-31559 | Msa1344780:intron | 35.0% |
| TCAAGACATAGCAATGAAAG+TGG | + | tig0006887:31606-31625 | Msa1344780:intron | 35.0% | |
| ACTTGAGCATTTACAAGTCT+TGG | + | tig0006887:31749-31768 | Msa1344780:intron | 35.0% | |
| TATAGATAAATGGCACGAGA+TGG | + | tig0006887:31786-31805 | Msa1344780:intron | 35.0% | |
| GTGGAAAAATTTCAGCTACA+GGG | + | tig0006887:31808-31827 | Msa1344780:intron | 35.0% | |
| TGGAAAAATTTCAGCTACAG+GGG | + | tig0006887:31809-31828 | Msa1344780:intron | 35.0% | |
| ! | TATATGAAGAGTGTGAGCAT+CGG | + | tig0006887:31851-31870 | Msa1344780:intron | 35.0% |
| !! | ATCTGCTTTTCAAATGGTGA+AGG | - | tig0006887:32087-32106 | None:intergenic | 35.0% |
| AAAGACTGTTGAGTTTCTTG+AGG | + | tig0006887:32164-32183 | Msa1344780:CDS | 35.0% | |
| TATGCTAAATCTGTTGGGTT+TGG | + | tig0006887:30848-30867 | Msa1344780:CDS | 35.0% | |
| TCTTATGCTTGCACAAGATA+TGG | + | tig0006887:30885-30904 | Msa1344780:CDS | 35.0% | |
| TCACAATCTACCTTCAAACA+AGG | - | tig0006887:30945-30964 | None:intergenic | 35.0% | |
| TTGTTTGAAGGTAGATTGTG+AGG | + | tig0006887:30944-30963 | Msa1344780:CDS | 35.0% | |
| !!! | ATTTATTTTGACGCGTAAGC+TGG | - | tig0006887:30970-30989 | None:intergenic | 35.0% |
| CGCGTCAAAATAAATTGCAA+TGG | + | tig0006887:30975-30994 | Msa1344780:CDS | 35.0% | |
| !! | TGTAAGAAACCTATTTTGGG+TGG | + | tig0006887:31346-31365 | Msa1344780:intron | 35.0% |
| ! | ATTTTGCATCCACCCAAAAT+AGG | - | tig0006887:31358-31377 | None:intergenic | 35.0% |
| CACTTTAAGTCAAGGTTACT+TGG | + | tig0006887:31482-31501 | Msa1344780:intron | 35.0% | |
| AGACCTCAAATACTTTCACT+TGG | + | tig0006887:31525-31544 | Msa1344780:intron | 35.0% | |
| !! | CAACCAAGTGAAAGTATTTG+AGG | - | tig0006887:31531-31550 | None:intergenic | 35.0% |
| !! | TCACTTGGTTGATGAAAACA+TGG | + | tig0006887:31540-31559 | Msa1344780:intron | 35.0% |
| TCAAGACATAGCAATGAAAG+TGG | + | tig0006887:31606-31625 | Msa1344780:intron | 35.0% | |
| ACTTGAGCATTTACAAGTCT+TGG | + | tig0006887:31749-31768 | Msa1344780:intron | 35.0% | |
| TATAGATAAATGGCACGAGA+TGG | + | tig0006887:31786-31805 | Msa1344780:intron | 35.0% | |
| GTGGAAAAATTTCAGCTACA+GGG | + | tig0006887:31808-31827 | Msa1344780:intron | 35.0% | |
| TGGAAAAATTTCAGCTACAG+GGG | + | tig0006887:31809-31828 | Msa1344780:intron | 35.0% | |
| ! | TATATGAAGAGTGTGAGCAT+CGG | + | tig0006887:31851-31870 | Msa1344780:intron | 35.0% |
| !! | ATCTGCTTTTCAAATGGTGA+AGG | - | tig0006887:32087-32106 | None:intergenic | 35.0% |
| AAAGACTGTTGAGTTTCTTG+AGG | + | tig0006887:32164-32183 | Msa1344780:CDS | 35.0% | |
| ! | TAACCCACATCCTTGTTTGA+AGG | + | tig0006887:30932-30951 | Msa1344780:CDS | 40.0% |
| CTACCTTCAAACAAGGATGT+GGG | - | tig0006887:30938-30957 | None:intergenic | 40.0% | |
| TCTACCTTCAAACAAGGATG+TGG | - | tig0006887:30939-30958 | None:intergenic | 40.0% | |
| ! | GGCCATTGTGGCAAAAATTT+TGG | - | tig0006887:31144-31163 | None:intergenic | 40.0% |
| TTCATACCCTCCATGTTGTT+TGG | - | tig0006887:31165-31184 | None:intergenic | 40.0% | |
| ! | CATGGAGGGTATGAAAACAT+TGG | + | tig0006887:31170-31189 | Msa1344780:CDS | 40.0% |
| TCGTCGTTTGACATTAGAGT+CGG | + | tig0006887:31232-31251 | Msa1344780:CDS | 40.0% | |
| AAAACATGGCTCAGAGCAAT+GGG | + | tig0006887:31554-31573 | Msa1344780:intron | 40.0% | |
| AATGAAAGTGGCGATTAGTG+AGG | + | tig0006887:31618-31637 | Msa1344780:intron | 40.0% | |
| !! | CAAAATTGGTGTCGAGTGTT+TGG | - | tig0006887:31649-31668 | None:intergenic | 40.0% |
| ! | CTCGACACCAATTTTGTCTT+TGG | + | tig0006887:31653-31672 | Msa1344780:intron | 40.0% |
| ATAAAGGTTCCTGAGAAGCT+TGG | + | tig0006887:31685-31704 | Msa1344780:intron | 40.0% | |
| ATTACATGACCAAGCTTCTC+AGG | - | tig0006887:31697-31716 | None:intergenic | 40.0% | |
| GCATTTACAAGTCTTGGTCA+AGG | + | tig0006887:31755-31774 | Msa1344780:intron | 40.0% | |
| GGTGGAAAAATTTCAGCTAC+AGG | + | tig0006887:31807-31826 | Msa1344780:intron | 40.0% | |
| ! | ATATGAAGAGTGTGAGCATC+GGG | + | tig0006887:31852-31871 | Msa1344780:intron | 40.0% |
| TCGGGTTCCTGTTTATATGA+AGG | + | tig0006887:31870-31889 | Msa1344780:intron | 40.0% | |
| ! | TACGTCTTTTCTATCCTGCA+AGG | - | tig0006887:32013-32032 | None:intergenic | 40.0% |
| !! | ACTGGCATCTGCTTTTCAAA+TGG | - | tig0006887:32093-32112 | None:intergenic | 40.0% |
| ! | TAACCCACATCCTTGTTTGA+AGG | + | tig0006887:30932-30951 | Msa1344780:CDS | 40.0% |
| CTACCTTCAAACAAGGATGT+GGG | - | tig0006887:30938-30957 | None:intergenic | 40.0% | |
| TCTACCTTCAAACAAGGATG+TGG | - | tig0006887:30939-30958 | None:intergenic | 40.0% | |
| ! | GGCCATTGTGGCAAAAATTT+TGG | - | tig0006887:31144-31163 | None:intergenic | 40.0% |
| TTCATACCCTCCATGTTGTT+TGG | - | tig0006887:31165-31184 | None:intergenic | 40.0% | |
| ! | CATGGAGGGTATGAAAACAT+TGG | + | tig0006887:31170-31189 | Msa1344780:CDS | 40.0% |
| TCGTCGTTTGACATTAGAGT+CGG | + | tig0006887:31232-31251 | Msa1344780:CDS | 40.0% | |
| AAAACATGGCTCAGAGCAAT+GGG | + | tig0006887:31554-31573 | Msa1344780:intron | 40.0% | |
| AATGAAAGTGGCGATTAGTG+AGG | + | tig0006887:31618-31637 | Msa1344780:intron | 40.0% | |
| !! | CAAAATTGGTGTCGAGTGTT+TGG | - | tig0006887:31649-31668 | None:intergenic | 40.0% |
| ! | CTCGACACCAATTTTGTCTT+TGG | + | tig0006887:31653-31672 | Msa1344780:intron | 40.0% |
| ATAAAGGTTCCTGAGAAGCT+TGG | + | tig0006887:31685-31704 | Msa1344780:intron | 40.0% | |
| ATTACATGACCAAGCTTCTC+AGG | - | tig0006887:31697-31716 | None:intergenic | 40.0% | |
| GCATTTACAAGTCTTGGTCA+AGG | + | tig0006887:31755-31774 | Msa1344780:intron | 40.0% | |
| GGTGGAAAAATTTCAGCTAC+AGG | + | tig0006887:31807-31826 | Msa1344780:intron | 40.0% | |
| ! | ATATGAAGAGTGTGAGCATC+GGG | + | tig0006887:31852-31871 | Msa1344780:intron | 40.0% |
| TCGGGTTCCTGTTTATATGA+AGG | + | tig0006887:31870-31889 | Msa1344780:intron | 40.0% | |
| ! | TACGTCTTTTCTATCCTGCA+AGG | - | tig0006887:32013-32032 | None:intergenic | 40.0% |
| !! | ACTGGCATCTGCTTTTCAAA+TGG | - | tig0006887:32093-32112 | None:intergenic | 40.0% |
| ! | ACAAGGATGTGGGTTATGTG+CGG | - | tig0006887:30928-30947 | None:intergenic | 45.0% |
| ! | TCCATGTTGTTTGGCCATTG+TGG | - | tig0006887:31156-31175 | None:intergenic | 45.0% |
| ACAATGGCCAAACAACATGG+AGG | + | tig0006887:31155-31174 | Msa1344780:CDS | 45.0% | |
| CAATGGCCAAACAACATGGA+GGG | + | tig0006887:31156-31175 | Msa1344780:CDS | 45.0% | |
| CGTCGTTTGACATTAGAGTC+GGG | + | tig0006887:31233-31252 | Msa1344780:CDS | 45.0% | |
| GGGAGATGCAACATCAATGT+TGG | + | tig0006887:31253-31272 | Msa1344780:CDS | 45.0% | |
| GAAAACATGGCTCAGAGCAA+TGG | + | tig0006887:31553-31572 | Msa1344780:intron | 45.0% | |
| AGATAAATGGCACGAGATGG+TGG | + | tig0006887:31789-31808 | Msa1344780:intron | 45.0% | |
| ! | ACAAGGATGTGGGTTATGTG+CGG | - | tig0006887:30928-30947 | None:intergenic | 45.0% |
| ! | TCCATGTTGTTTGGCCATTG+TGG | - | tig0006887:31156-31175 | None:intergenic | 45.0% |
| ACAATGGCCAAACAACATGG+AGG | + | tig0006887:31155-31174 | Msa1344780:CDS | 45.0% | |
| CAATGGCCAAACAACATGGA+GGG | + | tig0006887:31156-31175 | Msa1344780:CDS | 45.0% | |
| CGTCGTTTGACATTAGAGTC+GGG | + | tig0006887:31233-31252 | Msa1344780:CDS | 45.0% | |
| GGGAGATGCAACATCAATGT+TGG | + | tig0006887:31253-31272 | Msa1344780:CDS | 45.0% | |
| GAAAACATGGCTCAGAGCAA+TGG | + | tig0006887:31553-31572 | Msa1344780:intron | 45.0% | |
| AGATAAATGGCACGAGATGG+TGG | + | tig0006887:31789-31808 | Msa1344780:intron | 45.0% | |
| GCCACAATGGCCAAACAACA+TGG | + | tig0006887:31152-31171 | Msa1344780:CDS | 50.0% | |
| GCCACAATGGCCAAACAACA+TGG | + | tig0006887:31152-31171 | Msa1344780:CDS | 50.0% | |
| ! | AGGATGTGGGTTATGTGCGG+TGG | - | tig0006887:30925-30944 | None:intergenic | 55.0% |
| ACATGGCTCAGAGCAATGGG+CGG | + | tig0006887:31557-31576 | Msa1344780:intron | 55.0% | |
| ! | TTCAGCTACAGGGGCATGAG+TGG | + | tig0006887:31818-31837 | Msa1344780:intron | 55.0% |
| ! | AGGATGTGGGTTATGTGCGG+TGG | - | tig0006887:30925-30944 | None:intergenic | 55.0% |
| ACATGGCTCAGAGCAATGGG+CGG | + | tig0006887:31557-31576 | Msa1344780:intron | 55.0% | |
| ! | TTCAGCTACAGGGGCATGAG+TGG | + | tig0006887:31818-31837 | Msa1344780:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0006887 | gene | 30825 | 32191 | 30825 | ID=Msa1344780;Name=Msa1344780 |
| tig0006887 | mRNA | 30825 | 32191 | 30825 | ID=Msa1344780-mRNA-1;Parent=Msa1344780;Name=Msa1344780-mRNA-1;_AED=0.28;_eAED=0.36;_QI=0|0|0|0.66|0|0.33|3|0|228 |
| tig0006887 | exon | 30825 | 31040 | 30825 | ID=Msa1344780-mRNA-1:exon:4694;Parent=Msa1344780-mRNA-1 |
| tig0006887 | exon | 31101 | 31344 | 31101 | ID=Msa1344780-mRNA-1:exon:4695;Parent=Msa1344780-mRNA-1 |
| tig0006887 | exon | 31965 | 32191 | 31965 | ID=Msa1344780-mRNA-1:exon:4696;Parent=Msa1344780-mRNA-1 |
| tig0006887 | CDS | 30825 | 31040 | 30825 | ID=Msa1344780-mRNA-1:cds;Parent=Msa1344780-mRNA-1 |
| tig0006887 | CDS | 31101 | 31344 | 31101 | ID=Msa1344780-mRNA-1:cds;Parent=Msa1344780-mRNA-1 |
| tig0006887 | CDS | 31965 | 32191 | 31965 | ID=Msa1344780-mRNA-1:cds;Parent=Msa1344780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
