Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1345170 | GAU50374.1 | 68.365 | 373 | 91 | 1 | 185 | 530 | 363 | 735 | 2.31e-172 | 515 |
| Msa1345170 | GAU50374.1 | 76.111 | 180 | 43 | 0 | 12 | 191 | 5 | 184 | 5.89e-89 | 300 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1345170 | sp|Q9SZL8|FRS5_ARATH | 34.928 | 209 | 109 | 1 | 192 | 373 | 429 | 637 | 1.39e-34 | 142 |
| Msa1345170 | sp|Q9SZL8|FRS5_ARATH | 35.263 | 190 | 101 | 8 | 16 | 189 | 59 | 242 | 1.82e-19 | 95.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1345170 | A0A2Z6P1T9 | 68.365 | 373 | 91 | 1 | 185 | 530 | 363 | 735 | 1.10e-172 | 515 |
| Msa1345170 | A0A2Z6P1T9 | 76.111 | 180 | 43 | 0 | 12 | 191 | 5 | 184 | 2.82e-89 | 300 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1345170 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1345170 | MtrunA17_Chr5g0448761 | 32.143 | 280 | 161 | 3 | 192 | 442 | 420 | 699 | 3.52e-39 | 152 |
| Msa1345170 | MtrunA17_Chr5g0448761 | 33.158 | 190 | 110 | 6 | 14 | 191 | 48 | 232 | 2.89e-20 | 94.7 |
| Msa1345170 | MtrunA17_Chr5g0448511 | 32.593 | 270 | 155 | 3 | 192 | 434 | 192 | 461 | 7.85e-37 | 143 |
| Msa1345170 | MtrunA17_Chr1g0202341 | 34.008 | 247 | 129 | 8 | 157 | 371 | 366 | 610 | 6.83e-33 | 133 |
| Msa1345170 | MtrunA17_Chr1g0202341 | 31.282 | 195 | 101 | 9 | 25 | 199 | 50 | 231 | 1.11e-15 | 80.1 |
| Msa1345170 | MtrunA17_Chr2g0296781 | 28.746 | 327 | 170 | 9 | 192 | 480 | 345 | 646 | 2.79e-29 | 122 |
| Msa1345170 | MtrunA17_Chr6g0477261 | 28.783 | 337 | 177 | 10 | 191 | 489 | 233 | 544 | 5.62e-29 | 121 |
| Msa1345170 | MtrunA17_Chr3g0118611 | 30.189 | 212 | 119 | 2 | 185 | 369 | 291 | 500 | 6.13e-27 | 115 |
| Msa1345170 | MtrunA17_Chr5g0440451 | 28.261 | 276 | 155 | 4 | 192 | 434 | 401 | 666 | 5.54e-26 | 112 |
| Msa1345170 | MtrunA17_Chr3g0080351 | 32.692 | 208 | 110 | 3 | 190 | 369 | 417 | 622 | 7.01e-26 | 112 |
| Msa1345170 | MtrunA17_Chr3g0080351 | 34.507 | 142 | 73 | 7 | 13 | 136 | 58 | 197 | 6.44e-11 | 65.1 |
| Msa1345170 | MtrunA17_Chr2g0291581 | 31.776 | 214 | 112 | 3 | 192 | 371 | 409 | 622 | 3.85e-25 | 109 |
| Msa1345170 | MtrunA17_Chr1g0207551 | 31.373 | 204 | 114 | 3 | 192 | 369 | 385 | 588 | 4.03e-25 | 110 |
| Msa1345170 | MtrunA17_Chr1g0196541 | 31.579 | 209 | 110 | 3 | 192 | 367 | 345 | 553 | 1.23e-24 | 108 |
| Msa1345170 | MtrunA17_Chr2g0329031 | 26.852 | 216 | 119 | 3 | 186 | 369 | 352 | 560 | 5.33e-21 | 97.1 |
| Msa1345170 | MtrunA17_Chr1g0198761 | 25.676 | 370 | 205 | 11 | 191 | 530 | 410 | 739 | 2.93e-20 | 94.7 |
| Msa1345170 | MtrunA17_Chr5g0441581 | 28.889 | 225 | 124 | 5 | 191 | 382 | 372 | 593 | 6.25e-20 | 93.6 |
| Msa1345170 | MtrunA17_Chr3g0082121 | 26.587 | 252 | 162 | 5 | 190 | 418 | 387 | 638 | 1.76e-18 | 89.0 |
| Msa1345170 | MtrunA17_Chr8g0363841 | 26.357 | 258 | 154 | 6 | 192 | 413 | 370 | 627 | 2.40e-18 | 88.6 |
| Msa1345170 | MtrunA17_Chr2g0287651 | 28.641 | 206 | 119 | 5 | 192 | 369 | 426 | 631 | 1.34e-17 | 86.7 |
| Msa1345170 | MtrunA17_Chr2g0287061 | 26.538 | 260 | 157 | 4 | 192 | 423 | 498 | 751 | 3.80e-17 | 85.1 |
| Msa1345170 | MtrunA17_Chr2g0276841 | 28.283 | 198 | 120 | 3 | 192 | 367 | 429 | 626 | 2.75e-16 | 82.0 |
| Msa1345170 | MtrunA17_Chr2g0276841 | 26.111 | 180 | 110 | 4 | 26 | 189 | 70 | 242 | 1.03e-11 | 67.8 |
| Msa1345170 | MtrunA17_Chr2g0324011 | 27.273 | 209 | 125 | 5 | 192 | 373 | 363 | 571 | 2.16e-15 | 79.0 |
| Msa1345170 | MtrunA17_Chr2g0294841 | 20.833 | 360 | 237 | 10 | 192 | 524 | 407 | 745 | 1.11e-14 | 77.0 |
| Msa1345170 | MtrunA17_Chr1g0203051 | 30.769 | 156 | 106 | 2 | 188 | 342 | 424 | 578 | 2.95e-14 | 75.5 |
| Msa1345170 | MtrunA17_Chr2g0291591 | 29.008 | 131 | 93 | 0 | 185 | 315 | 405 | 535 | 3.55e-14 | 75.1 |
| Msa1345170 | MtrunA17_Chr2g0291591 | 32.450 | 151 | 74 | 6 | 24 | 167 | 62 | 191 | 7.01e-13 | 71.2 |
| Msa1345170 | MtrunA17_Chr2g0289081 | 53.704 | 54 | 25 | 0 | 26 | 79 | 64 | 117 | 1.55e-12 | 65.1 |
| Msa1345170 | MtrunA17_Chr1g0203721 | 24.155 | 207 | 131 | 1 | 192 | 372 | 419 | 625 | 1.74e-12 | 70.1 |
| Msa1345170 | MtrunA17_Chr2g0308841 | 23.318 | 223 | 142 | 4 | 187 | 380 | 16 | 238 | 3.97e-12 | 66.6 |
| Msa1345170 | MtrunA17_Chr2g0329361 | 29.630 | 135 | 74 | 4 | 25 | 152 | 60 | 180 | 1.10e-11 | 65.1 |
| Msa1345170 | MtrunA17_Chr6g0458391 | 26.087 | 207 | 125 | 3 | 190 | 369 | 559 | 764 | 8.64e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1345170 | AT4G38180.1 | 34.928 | 209 | 109 | 1 | 192 | 373 | 429 | 637 | 1.41e-35 | 142 |
| Msa1345170 | AT4G38180.1 | 35.263 | 190 | 101 | 8 | 16 | 189 | 59 | 242 | 1.85e-20 | 95.9 |
| Msa1345170 | AT4G38170.1 | 29.693 | 293 | 173 | 4 | 192 | 453 | 194 | 484 | 4.84e-33 | 132 |
| Msa1345170 | AT2G27110.2 | 27.068 | 266 | 162 | 4 | 185 | 423 | 369 | 629 | 4.91e-28 | 119 |
| Msa1345170 | AT2G27110.1 | 27.068 | 266 | 162 | 4 | 185 | 423 | 369 | 629 | 4.91e-28 | 119 |
| Msa1345170 | AT2G27110.3 | 27.068 | 266 | 162 | 4 | 185 | 423 | 224 | 484 | 6.57e-28 | 118 |
| Msa1345170 | AT4G15090.1 | 31.731 | 208 | 116 | 1 | 192 | 373 | 405 | 612 | 7.85e-28 | 118 |
| Msa1345170 | AT4G15090.5 | 31.731 | 208 | 116 | 1 | 192 | 373 | 405 | 612 | 7.85e-28 | 118 |
| Msa1345170 | AT4G15090.3 | 31.731 | 208 | 116 | 1 | 192 | 373 | 405 | 612 | 7.85e-28 | 118 |
| Msa1345170 | AT4G15090.2 | 31.731 | 208 | 116 | 1 | 192 | 373 | 405 | 612 | 7.85e-28 | 118 |
| Msa1345170 | AT4G15090.4 | 31.731 | 208 | 116 | 1 | 192 | 373 | 405 | 612 | 7.85e-28 | 118 |
| Msa1345170 | AT1G76320.1 | 27.385 | 325 | 193 | 9 | 192 | 482 | 342 | 657 | 1.15e-23 | 105 |
| Msa1345170 | AT1G76320.4 | 27.385 | 325 | 193 | 9 | 192 | 482 | 342 | 657 | 1.15e-23 | 105 |
| Msa1345170 | AT1G76320.2 | 27.385 | 325 | 193 | 9 | 192 | 482 | 342 | 657 | 1.27e-23 | 105 |
| Msa1345170 | AT1G76320.3 | 27.385 | 325 | 193 | 9 | 192 | 482 | 342 | 657 | 1.96e-23 | 104 |
| Msa1345170 | AT3G22170.2 | 28.293 | 205 | 121 | 1 | 191 | 369 | 413 | 617 | 1.30e-22 | 102 |
| Msa1345170 | AT3G22170.2 | 31.081 | 148 | 82 | 6 | 7 | 136 | 46 | 191 | 4.23e-12 | 69.3 |
| Msa1345170 | AT3G22170.1 | 28.293 | 205 | 121 | 1 | 191 | 369 | 413 | 617 | 1.30e-22 | 102 |
| Msa1345170 | AT3G22170.1 | 31.081 | 148 | 82 | 6 | 7 | 136 | 46 | 191 | 4.23e-12 | 69.3 |
| Msa1345170 | AT1G52520.1 | 30.233 | 215 | 115 | 4 | 192 | 371 | 425 | 639 | 1.93e-21 | 98.6 |
| Msa1345170 | AT2G32250.2 | 24.723 | 271 | 173 | 2 | 192 | 436 | 349 | 614 | 6.50e-21 | 97.4 |
| Msa1345170 | AT2G32250.4 | 24.723 | 271 | 173 | 2 | 192 | 436 | 349 | 614 | 6.50e-21 | 97.4 |
| Msa1345170 | AT2G32250.6 | 24.723 | 271 | 173 | 2 | 192 | 436 | 349 | 614 | 7.37e-21 | 97.1 |
| Msa1345170 | AT2G32250.1 | 24.723 | 271 | 173 | 2 | 192 | 436 | 349 | 614 | 7.37e-21 | 97.1 |
| Msa1345170 | AT2G32250.3 | 24.723 | 271 | 173 | 2 | 192 | 436 | 349 | 614 | 7.37e-21 | 97.1 |
| Msa1345170 | AT2G32250.7 | 24.723 | 271 | 173 | 2 | 192 | 436 | 308 | 573 | 8.21e-21 | 97.1 |
| Msa1345170 | AT2G32250.5 | 24.723 | 271 | 173 | 2 | 192 | 436 | 349 | 614 | 8.77e-21 | 96.7 |
| Msa1345170 | AT2G32250.8 | 24.723 | 271 | 173 | 2 | 192 | 436 | 308 | 573 | 9.03e-21 | 96.7 |
| Msa1345170 | AT4G19990.6 | 29.126 | 206 | 118 | 4 | 192 | 369 | 353 | 558 | 5.17e-20 | 94.4 |
| Msa1345170 | AT4G19990.2 | 29.126 | 206 | 118 | 4 | 192 | 369 | 353 | 558 | 5.17e-20 | 94.4 |
| Msa1345170 | AT4G19990.1 | 29.126 | 206 | 118 | 4 | 192 | 369 | 296 | 501 | 5.31e-20 | 94.4 |
| Msa1345170 | AT4G19990.3 | 29.126 | 206 | 118 | 4 | 192 | 369 | 353 | 558 | 6.03e-20 | 94.4 |
| Msa1345170 | AT4G19990.4 | 29.126 | 206 | 118 | 4 | 192 | 369 | 353 | 558 | 6.03e-20 | 94.4 |
| Msa1345170 | AT4G19990.7 | 29.126 | 206 | 118 | 4 | 192 | 369 | 367 | 572 | 6.12e-20 | 94.4 |
| Msa1345170 | AT4G19990.5 | 29.126 | 206 | 118 | 4 | 192 | 369 | 353 | 558 | 6.24e-20 | 94.0 |
| Msa1345170 | AT5G18960.2 | 28.230 | 209 | 120 | 3 | 192 | 373 | 526 | 731 | 1.18e-18 | 90.1 |
| Msa1345170 | AT5G18960.1 | 28.230 | 209 | 120 | 3 | 192 | 373 | 526 | 731 | 1.18e-18 | 90.1 |
| Msa1345170 | AT3G06250.2 | 26.255 | 259 | 158 | 5 | 192 | 423 | 502 | 754 | 1.38e-18 | 90.1 |
| Msa1345170 | AT3G06250.1 | 26.255 | 259 | 158 | 5 | 192 | 423 | 502 | 754 | 1.38e-18 | 90.1 |
| Msa1345170 | AT3G06250.3 | 26.255 | 259 | 158 | 5 | 192 | 423 | 502 | 754 | 1.38e-18 | 90.1 |
| Msa1345170 | AT1G80010.1 | 25.455 | 220 | 131 | 5 | 185 | 371 | 443 | 662 | 2.56e-17 | 85.9 |
| Msa1345170 | AT1G10240.2 | 24.818 | 274 | 164 | 8 | 192 | 433 | 407 | 670 | 1.02e-14 | 77.8 |
| Msa1345170 | AT1G10240.2 | 26.230 | 183 | 112 | 4 | 23 | 189 | 45 | 220 | 1.50e-12 | 70.9 |
| Msa1345170 | AT1G10240.1 | 24.818 | 274 | 164 | 8 | 192 | 433 | 407 | 670 | 1.02e-14 | 77.8 |
| Msa1345170 | AT1G10240.1 | 26.230 | 183 | 112 | 4 | 23 | 189 | 45 | 220 | 1.50e-12 | 70.9 |
| Msa1345170 | AT3G59470.3 | 32.576 | 132 | 72 | 5 | 6 | 130 | 50 | 171 | 1.09e-11 | 65.5 |
| Msa1345170 | AT3G59470.1 | 32.576 | 132 | 72 | 5 | 6 | 130 | 50 | 171 | 1.09e-11 | 65.5 |
| Msa1345170 | AT3G59470.2 | 32.576 | 132 | 72 | 5 | 6 | 130 | 62 | 183 | 1.38e-11 | 65.5 |
Find 75 sgRNAs with CRISPR-Local
Find 266 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGCCTTGTTGAACAGTTTA+AGG | 0.134754 | tig0007112:+37190 | Msa1345170:CDS |
| CCCATCCTTCTTTCTTCCTT+TGG | 0.210149 | tig0007112:-38810 | None:intergenic |
| GGGATTCAGCTTTCTCTAAT+AGG | 0.233911 | tig0007112:+37258 | Msa1345170:CDS |
| AGATGAATGGAAGCGTTTAA+TGG | 0.328762 | tig0007112:+37866 | Msa1345170:intron |
| GATATTGTGCAGACATATAT+TGG | 0.353622 | tig0007112:+38394 | Msa1345170:intron |
| TAGCCTGATTTGTGTCATCT+TGG | 0.357525 | tig0007112:-36992 | None:intergenic |
| GGATTCAGCTTTCTCTAATA+GGG | 0.365034 | tig0007112:+37259 | Msa1345170:CDS |
| GGGGTACAACGGAAGGTAAT+TGG | 0.367395 | tig0007112:+37069 | Msa1345170:CDS |
| AAGAAGGATGCATGTTCAAC+AGG | 0.368503 | tig0007112:+38556 | Msa1345170:CDS |
| TTTAATGGTTGAGTATAATC+TGG | 0.372730 | tig0007112:+37881 | Msa1345170:CDS |
| TGGTGATGGAATTTCTCCTT+TGG | 0.376539 | tig0007112:+38697 | Msa1345170:CDS |
| TTCTTCCTTTGGTTTGTGCT+TGG | 0.378150 | tig0007112:-38799 | None:intergenic |
| CTTTCTCTAATAGGGATTGT+TGG | 0.393553 | tig0007112:+37267 | Msa1345170:CDS |
| AATAAATTTGATTGACATCC+TGG | 0.396334 | tig0007112:-38727 | None:intergenic |
| GAAAACAATGAATGGCTTCA+AGG | 0.415447 | tig0007112:+37903 | Msa1345170:CDS |
| AAAACCGAAAAGAGCTATCT+TGG | 0.417824 | tig0007112:+36917 | Msa1345170:CDS |
| GAACAGCCAGAACTCACTAT+TGG | 0.421931 | tig0007112:+38767 | Msa1345170:CDS |
| TAAATAGTGAACCTTGTAAT+GGG | 0.426162 | tig0007112:+36808 | Msa1345170:CDS |
| TTCTCCTTTGGAATCTAGCC+AGG | 0.428333 | tig0007112:+38709 | Msa1345170:CDS |
| GGGTTTCCAATAGTGAGTTC+TGG | 0.429369 | tig0007112:-38773 | None:intergenic |
| AATTCACTTCTATTATAAAC+CGG | 0.443437 | tig0007112:-37954 | None:intergenic |
| CTTTGGTTTGTGCTTGGCGT+GGG | 0.443719 | tig0007112:-38793 | None:intergenic |
| TCTTGCAAGTTCTGCTGTTG+TGG | 0.446841 | tig0007112:-38934 | None:intergenic |
| GTCTCATGAAAATATTTCAA+TGG | 0.447167 | tig0007112:+36761 | Msa1345170:CDS |
| AAGCTTCACTTACTGTTACA+AGG | 0.461078 | tig0007112:+37048 | Msa1345170:CDS |
| AAGAGTTCATCTTCTCGAAC+CGG | 0.461559 | tig0007112:+37020 | Msa1345170:CDS |
| AATCCAAGATGACACAAATC+AGG | 0.464191 | tig0007112:+36989 | Msa1345170:CDS |
| TTTAATTCCTCGCCAACATT+CGG | 0.464350 | tig0007112:-36789 | None:intergenic |
| ATTTGTGTTAAAATTTGAAA+AGG | 0.469070 | tig0007112:+38064 | Msa1345170:CDS |
| TACAATGTTTCGAAGATGAA+TGG | 0.470517 | tig0007112:+37853 | Msa1345170:intron |
| AGTAAGTGAAGCTTTACAAC+CGG | 0.474121 | tig0007112:-37039 | None:intergenic |
| TCTCATGAAAATATTTCAAT+GGG | 0.474275 | tig0007112:+36762 | Msa1345170:CDS |
| TTGGTAATATTGCAAGCAAA+AGG | 0.478299 | tig0007112:+38413 | Msa1345170:CDS |
| TTAAATAGTGAACCTTGTAA+TGG | 0.482835 | tig0007112:+36807 | Msa1345170:CDS |
| GGAGAAATTCCATCACCAAC+AGG | 0.484890 | tig0007112:-38692 | None:intergenic |
| TTGAATTCCATCCCATTACA+AGG | 0.486817 | tig0007112:-36819 | None:intergenic |
| TCAAATTTACCTGTTGGTGA+TGG | 0.490672 | tig0007112:+38683 | Msa1345170:CDS |
| CCTTTGGTTTGTGCTTGGCG+TGG | 0.499884 | tig0007112:-38794 | None:intergenic |
| ATAATCTGGAAAACAATGAA+TGG | 0.501263 | tig0007112:+37895 | Msa1345170:CDS |
| AAGAAATCAAATTTACCTGT+TGG | 0.505747 | tig0007112:+38677 | Msa1345170:CDS |
| GGCGCTTGATAGCAGCTTAG+CGG | 0.513211 | tig0007112:+38085 | Msa1345170:CDS |
| AGCTTCACTTACTGTTACAA+GGG | 0.522791 | tig0007112:+37049 | Msa1345170:CDS |
| CCAAAGGAAGAAAGAAGGAT+GGG | 0.526798 | tig0007112:+38810 | Msa1345170:CDS |
| ATCTTGGTATGTTCTAATGA+AGG | 0.531078 | tig0007112:+36933 | Msa1345170:CDS |
| AGAAAGAAGATTAAAAGAGA+AGG | 0.533498 | tig0007112:+38254 | Msa1345170:CDS |
| TCAATGGGATCTCCGAATGT+TGG | 0.534987 | tig0007112:+36777 | Msa1345170:CDS |
| TAGTGAACCTTGTAATGGGA+TGG | 0.536929 | tig0007112:+36812 | Msa1345170:CDS |
| ACAAACCAAAGGAAGAAAGA+AGG | 0.551427 | tig0007112:+38805 | Msa1345170:CDS |
| ACCAAAGGAAGAAAGAAGGA+TGG | 0.552890 | tig0007112:+38809 | Msa1345170:CDS |
| AAAACAATGAATGGCTTCAA+GGG | 0.554540 | tig0007112:+37904 | Msa1345170:CDS |
| CGCTGCAAAATGAAATGACT+AGG | 0.557513 | tig0007112:-38449 | None:intergenic |
| TCAAAACTTGAGGTGCATGC+TGG | 0.558360 | tig0007112:+38164 | Msa1345170:CDS |
| TATCAGAGCATCATGGATAC+CGG | 0.562826 | tig0007112:+37935 | Msa1345170:CDS |
| AGTTGATCTTGCTGAAGACT+CGG | 0.563370 | tig0007112:+38592 | Msa1345170:CDS |
| CAATGATCATAACCATGCTA+TGG | 0.573210 | tig0007112:+37109 | Msa1345170:CDS |
| CAATCAAATTTATTTGTCAG+AGG | 0.576100 | tig0007112:+38736 | Msa1345170:CDS |
| AAGGAAGAACAGATACCGAC+AGG | 0.580829 | tig0007112:+37209 | Msa1345170:CDS |
| TACAACATGGTCAAAACTTG+AGG | 0.581192 | tig0007112:+38154 | Msa1345170:CDS |
| CTTCCTTAAACTGTTCAACA+AGG | 0.583874 | tig0007112:-37193 | None:intergenic |
| CCACGCCAAGCACAAACCAA+AGG | 0.586137 | tig0007112:+38794 | Msa1345170:CDS |
| TATATAGTATCAGAGCATCA+TGG | 0.587463 | tig0007112:+37928 | Msa1345170:CDS |
| CAAAGGAAGAAAGAAGGATG+GGG | 0.594217 | tig0007112:+38811 | Msa1345170:CDS |
| TACTGTTACAAGGGGTACAA+CGG | 0.611755 | tig0007112:+37058 | Msa1345170:CDS |
| GCTTCACTTACTGTTACAAG+GGG | 0.617495 | tig0007112:+37050 | Msa1345170:CDS |
| CAAAATTGCAGATTCAAGAG+TGG | 0.619428 | tig0007112:+38845 | Msa1345170:CDS |
| TGTCATGAGTGTGGTGCACA+TGG | 0.635601 | tig0007112:+38911 | Msa1345170:CDS |
| GGGATCTCCGAATGTTGGCG+AGG | 0.653176 | tig0007112:+36782 | Msa1345170:CDS |
| TGTCAAAAGTTCTAACAACA+AGG | 0.663183 | tig0007112:+36965 | Msa1345170:CDS |
| ACATCCTGGCTAGATTCCAA+AGG | 0.665285 | tig0007112:-38713 | None:intergenic |
| GTTACAAGGGGTACAACGGA+AGG | 0.671387 | tig0007112:+37062 | Msa1345170:CDS |
| AAACTCGGAGGTTTACAACA+TGG | 0.673994 | tig0007112:+38141 | Msa1345170:CDS |
| ATGAAAGTAAGCATAAAACT+CGG | 0.678069 | tig0007112:+38126 | Msa1345170:CDS |
| TGGACTAAGGATGCTAACAA+AGG | 0.678940 | tig0007112:+38473 | Msa1345170:CDS |
| AAAGTAAGCATAAAACTCGG+AGG | 0.714539 | tig0007112:+38129 | Msa1345170:CDS |
| AGAAAAGCATGTCATGAGTG+TGG | 0.715894 | tig0007112:+38902 | Msa1345170:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTATTTGCTAGAAAAAT+TGG | + | tig0007112:36870-36889 | Msa1345170:CDS | 15.0% |
| !! | ATTTGTGTTAAAATTTGAAA+AGG | + | tig0007112:38064-38083 | Msa1345170:CDS | 15.0% |
| !!! | AATTTATTTGCTAGAAAAAT+TGG | + | tig0007112:36870-36889 | Msa1345170:CDS | 15.0% |
| !! | ATTTGTGTTAAAATTTGAAA+AGG | + | tig0007112:38064-38083 | Msa1345170:CDS | 15.0% |
| !! | TCTCATGAAAATATTTCAAT+GGG | + | tig0007112:36762-36781 | Msa1345170:CDS | 20.0% |
| !!! | TTGCTACAATTTTCAATAAT+GGG | + | tig0007112:37237-37256 | Msa1345170:CDS | 20.0% |
| !!! | TCGAATGATAAATTTTTTCT+GGG | + | tig0007112:37418-37437 | Msa1345170:intron | 20.0% |
| !!! | CATTACCAATCAATTTTATT+TGG | + | tig0007112:37557-37576 | Msa1345170:intron | 20.0% |
| !! | AATTCACTTCTATTATAAAC+CGG | - | tig0007112:37957-37976 | None:intergenic | 20.0% |
| !! | TCTCATGAAAATATTTCAAT+GGG | + | tig0007112:36762-36781 | Msa1345170:CDS | 20.0% |
| !!! | TTGCTACAATTTTCAATAAT+GGG | + | tig0007112:37237-37256 | Msa1345170:CDS | 20.0% |
| !!! | TCGAATGATAAATTTTTTCT+GGG | + | tig0007112:37418-37437 | Msa1345170:intron | 20.0% |
| !!! | CATTACCAATCAATTTTATT+TGG | + | tig0007112:37557-37576 | Msa1345170:intron | 20.0% |
| !! | AATTCACTTCTATTATAAAC+CGG | - | tig0007112:37957-37976 | None:intergenic | 20.0% |
| ! | GTCTCATGAAAATATTTCAA+TGG | + | tig0007112:36761-36780 | Msa1345170:CDS | 25.0% |
| ! | TTAAATAGTGAACCTTGTAA+TGG | + | tig0007112:36807-36826 | Msa1345170:CDS | 25.0% |
| ! | TAAATAGTGAACCTTGTAAT+GGG | + | tig0007112:36808-36827 | Msa1345170:CDS | 25.0% |
| !!! | TTTGCTAGAAAAATTGGTTT+TGG | + | tig0007112:36876-36895 | Msa1345170:CDS | 25.0% |
| !! | TCATATAAGACACACTTTTA+GGG | - | tig0007112:37139-37158 | None:intergenic | 25.0% |
| ! | TATGAGATGTCATAAAAAGA+TGG | + | tig0007112:37154-37173 | Msa1345170:CDS | 25.0% |
| ! | ATGAGATGTCATAAAAAGAT+GGG | + | tig0007112:37155-37174 | Msa1345170:CDS | 25.0% |
| !! | GTTGCTACAATTTTCAATAA+TGG | + | tig0007112:37236-37255 | Msa1345170:CDS | 25.0% |
| !! | TGCTACAATTTTCAATAATG+GGG | + | tig0007112:37238-37257 | Msa1345170:CDS | 25.0% |
| ! | ATATGAAAAAACTTCGAAGT+AGG | + | tig0007112:37294-37313 | Msa1345170:intron | 25.0% |
| !!! | CTCGAATGATAAATTTTTTC+TGG | + | tig0007112:37417-37436 | Msa1345170:intron | 25.0% |
| ! | CACAACCAAATAAAATTGAT+TGG | - | tig0007112:37565-37584 | None:intergenic | 25.0% |
| ! | TTTAATGGTTGAGTATAATC+TGG | + | tig0007112:37881-37900 | Msa1345170:CDS | 25.0% |
| ! | ATAATCTGGAAAACAATGAA+TGG | + | tig0007112:37895-37914 | Msa1345170:CDS | 25.0% |
| !!! | AATAGAAGTGAATTTTTTGC+TGG | + | tig0007112:37963-37982 | Msa1345170:CDS | 25.0% |
| !!! | ATAGAAGTGAATTTTTTGCT+GGG | + | tig0007112:37964-37983 | Msa1345170:CDS | 25.0% |
| ! | ATGAAAGTAAGCATAAAACT+CGG | + | tig0007112:38126-38145 | Msa1345170:CDS | 25.0% |
| ! | AGAAAGAAGATTAAAAGAGA+AGG | + | tig0007112:38254-38273 | Msa1345170:CDS | 25.0% |
| ! | ATGTCAACTGTTTGAATATT+TGG | + | tig0007112:38370-38389 | Msa1345170:intron | 25.0% |
| ! | TGTCAACTGTTTGAATATTT+GGG | + | tig0007112:38371-38390 | Msa1345170:intron | 25.0% |
| !!! | AGTAATTTTGATGATCAAAC+TGG | + | tig0007112:38518-38537 | Msa1345170:CDS | 25.0% |
| !!! | GCACTTCAAAAATTTTAAGA+AGG | + | tig0007112:38540-38559 | Msa1345170:CDS | 25.0% |
| ! | AAGAAATCAAATTTACCTGT+TGG | + | tig0007112:38677-38696 | Msa1345170:CDS | 25.0% |
| ! | AATAAATTTGATTGACATCC+TGG | - | tig0007112:38730-38749 | None:intergenic | 25.0% |
| ! | CAATCAAATTTATTTGTCAG+AGG | + | tig0007112:38736-38755 | Msa1345170:CDS | 25.0% |
| ! | GTCTCATGAAAATATTTCAA+TGG | + | tig0007112:36761-36780 | Msa1345170:CDS | 25.0% |
| ! | TTAAATAGTGAACCTTGTAA+TGG | + | tig0007112:36807-36826 | Msa1345170:CDS | 25.0% |
| ! | TAAATAGTGAACCTTGTAAT+GGG | + | tig0007112:36808-36827 | Msa1345170:CDS | 25.0% |
| !!! | TTTGCTAGAAAAATTGGTTT+TGG | + | tig0007112:36876-36895 | Msa1345170:CDS | 25.0% |
| !! | TCATATAAGACACACTTTTA+GGG | - | tig0007112:37139-37158 | None:intergenic | 25.0% |
| ! | TATGAGATGTCATAAAAAGA+TGG | + | tig0007112:37154-37173 | Msa1345170:CDS | 25.0% |
| ! | ATGAGATGTCATAAAAAGAT+GGG | + | tig0007112:37155-37174 | Msa1345170:CDS | 25.0% |
| !! | GTTGCTACAATTTTCAATAA+TGG | + | tig0007112:37236-37255 | Msa1345170:CDS | 25.0% |
| !! | TGCTACAATTTTCAATAATG+GGG | + | tig0007112:37238-37257 | Msa1345170:CDS | 25.0% |
| ! | ATATGAAAAAACTTCGAAGT+AGG | + | tig0007112:37294-37313 | Msa1345170:intron | 25.0% |
| !!! | CTCGAATGATAAATTTTTTC+TGG | + | tig0007112:37417-37436 | Msa1345170:intron | 25.0% |
| ! | CACAACCAAATAAAATTGAT+TGG | - | tig0007112:37565-37584 | None:intergenic | 25.0% |
| ! | TTTAATGGTTGAGTATAATC+TGG | + | tig0007112:37881-37900 | Msa1345170:CDS | 25.0% |
| ! | ATAATCTGGAAAACAATGAA+TGG | + | tig0007112:37895-37914 | Msa1345170:CDS | 25.0% |
| !!! | AATAGAAGTGAATTTTTTGC+TGG | + | tig0007112:37963-37982 | Msa1345170:CDS | 25.0% |
| !!! | ATAGAAGTGAATTTTTTGCT+GGG | + | tig0007112:37964-37983 | Msa1345170:CDS | 25.0% |
| ! | ATGAAAGTAAGCATAAAACT+CGG | + | tig0007112:38126-38145 | Msa1345170:CDS | 25.0% |
| ! | AGAAAGAAGATTAAAAGAGA+AGG | + | tig0007112:38254-38273 | Msa1345170:CDS | 25.0% |
| ! | ATGTCAACTGTTTGAATATT+TGG | + | tig0007112:38370-38389 | Msa1345170:intron | 25.0% |
| ! | TGTCAACTGTTTGAATATTT+GGG | + | tig0007112:38371-38390 | Msa1345170:intron | 25.0% |
| !!! | AGTAATTTTGATGATCAAAC+TGG | + | tig0007112:38518-38537 | Msa1345170:CDS | 25.0% |
| !!! | GCACTTCAAAAATTTTAAGA+AGG | + | tig0007112:38540-38559 | Msa1345170:CDS | 25.0% |
| ! | AAGAAATCAAATTTACCTGT+TGG | + | tig0007112:38677-38696 | Msa1345170:CDS | 25.0% |
| ! | AATAAATTTGATTGACATCC+TGG | - | tig0007112:38730-38749 | None:intergenic | 25.0% |
| ! | CAATCAAATTTATTTGTCAG+AGG | + | tig0007112:38736-38755 | Msa1345170:CDS | 25.0% |
| ATCTTGGTATGTTCTAATGA+AGG | + | tig0007112:36933-36952 | Msa1345170:CDS | 30.0% | |
| ! | TAGAACTTTTGACAAGATGT+TGG | - | tig0007112:36959-36978 | None:intergenic | 30.0% |
| ! | TGTCAAAAGTTCTAACAACA+AGG | + | tig0007112:36965-36984 | Msa1345170:CDS | 30.0% |
| ! | CTCATATAAGACACACTTTT+AGG | - | tig0007112:37140-37159 | None:intergenic | 30.0% |
| TAATTATTGCAAACAGAGAC+AGG | + | tig0007112:37349-37368 | Msa1345170:intron | 30.0% | |
| AGATTAGCATACCAACAATT+TGG | + | tig0007112:37455-37474 | Msa1345170:intron | 30.0% | |
| AAATGACATCTCCAAATTGT+TGG | - | tig0007112:37469-37488 | None:intergenic | 30.0% | |
| !!! | GTACTTGTTGGTTTTATATG+TGG | - | tig0007112:37501-37520 | None:intergenic | 30.0% |
| TGATTATTCAATCCAACGAA+CGG | - | tig0007112:37539-37558 | None:intergenic | 30.0% | |
| ! | TGCTTTATTACAAGATGAGT+CGG | + | tig0007112:37583-37602 | Msa1345170:intron | 30.0% |
| !! | GTTGTTTGAAACTTTTCTTG+AGG | + | tig0007112:37622-37641 | Msa1345170:intron | 30.0% |
| TTGATCAGTTATGACAGATT+TGG | - | tig0007112:37667-37686 | None:intergenic | 30.0% | |
| AAATCTGTCATAACTGATCA+AGG | + | tig0007112:37666-37685 | Msa1345170:intron | 30.0% | |
| !!! | TAAATATGAGCTAGCTTTTC+AGG | - | tig0007112:37774-37793 | None:intergenic | 30.0% |
| ! | TTTAAGTTCTCGCTTGAAAA+TGG | - | tig0007112:37808-37827 | None:intergenic | 30.0% |
| GAACTTAAAAGTTGCATTCA+TGG | + | tig0007112:37819-37838 | Msa1345170:intron | 30.0% | |
| TCTTCGAAACATTGTATACT+CGG | - | tig0007112:37849-37868 | None:intergenic | 30.0% | |
| TACAATGTTTCGAAGATGAA+TGG | + | tig0007112:37853-37872 | Msa1345170:intron | 30.0% | |
| AAAACAATGAATGGCTTCAA+GGG | + | tig0007112:37904-37923 | Msa1345170:CDS | 30.0% | |
| ! | TATATAGTATCAGAGCATCA+TGG | + | tig0007112:37928-37947 | Msa1345170:CDS | 30.0% |
| GTCAACTGTTTGAATATTTG+GGG | + | tig0007112:38372-38391 | Msa1345170:intron | 30.0% | |
| GATATTGTGCAGACATATAT+TGG | + | tig0007112:38394-38413 | Msa1345170:intron | 30.0% | |
| ! | TTGGTAATATTGCAAGCAAA+AGG | + | tig0007112:38413-38432 | Msa1345170:CDS | 30.0% |
| ATCTTGGTATGTTCTAATGA+AGG | + | tig0007112:36933-36952 | Msa1345170:CDS | 30.0% | |
| ! | TAGAACTTTTGACAAGATGT+TGG | - | tig0007112:36959-36978 | None:intergenic | 30.0% |
| ! | TGTCAAAAGTTCTAACAACA+AGG | + | tig0007112:36965-36984 | Msa1345170:CDS | 30.0% |
| ! | CTCATATAAGACACACTTTT+AGG | - | tig0007112:37140-37159 | None:intergenic | 30.0% |
| TAATTATTGCAAACAGAGAC+AGG | + | tig0007112:37349-37368 | Msa1345170:intron | 30.0% | |
| AGATTAGCATACCAACAATT+TGG | + | tig0007112:37455-37474 | Msa1345170:intron | 30.0% | |
| AAATGACATCTCCAAATTGT+TGG | - | tig0007112:37469-37488 | None:intergenic | 30.0% | |
| !!! | GTACTTGTTGGTTTTATATG+TGG | - | tig0007112:37501-37520 | None:intergenic | 30.0% |
| TGATTATTCAATCCAACGAA+CGG | - | tig0007112:37539-37558 | None:intergenic | 30.0% | |
| ! | TGCTTTATTACAAGATGAGT+CGG | + | tig0007112:37583-37602 | Msa1345170:intron | 30.0% |
| !! | GTTGTTTGAAACTTTTCTTG+AGG | + | tig0007112:37622-37641 | Msa1345170:intron | 30.0% |
| TTGATCAGTTATGACAGATT+TGG | - | tig0007112:37667-37686 | None:intergenic | 30.0% | |
| AAATCTGTCATAACTGATCA+AGG | + | tig0007112:37666-37685 | Msa1345170:intron | 30.0% | |
| !!! | TAAATATGAGCTAGCTTTTC+AGG | - | tig0007112:37774-37793 | None:intergenic | 30.0% |
| ! | TTTAAGTTCTCGCTTGAAAA+TGG | - | tig0007112:37808-37827 | None:intergenic | 30.0% |
| GAACTTAAAAGTTGCATTCA+TGG | + | tig0007112:37819-37838 | Msa1345170:intron | 30.0% | |
| TCTTCGAAACATTGTATACT+CGG | - | tig0007112:37849-37868 | None:intergenic | 30.0% | |
| TACAATGTTTCGAAGATGAA+TGG | + | tig0007112:37853-37872 | Msa1345170:intron | 30.0% | |
| AAAACAATGAATGGCTTCAA+GGG | + | tig0007112:37904-37923 | Msa1345170:CDS | 30.0% | |
| ! | TATATAGTATCAGAGCATCA+TGG | + | tig0007112:37928-37947 | Msa1345170:CDS | 30.0% |
| GTCAACTGTTTGAATATTTG+GGG | + | tig0007112:38372-38391 | Msa1345170:intron | 30.0% | |
| GATATTGTGCAGACATATAT+TGG | + | tig0007112:38394-38413 | Msa1345170:intron | 30.0% | |
| ! | TTGGTAATATTGCAAGCAAA+AGG | + | tig0007112:38413-38432 | Msa1345170:CDS | 30.0% |
| TTTAATTCCTCGCCAACATT+CGG | - | tig0007112:36792-36811 | None:intergenic | 35.0% | |
| TTGAATTCCATCCCATTACA+AGG | - | tig0007112:36822-36841 | None:intergenic | 35.0% | |
| AAAACCGAAAAGAGCTATCT+TGG | + | tig0007112:36917-36936 | Msa1345170:CDS | 35.0% | |
| ! | CATACCAAGATAGCTCTTTT+CGG | - | tig0007112:36924-36943 | None:intergenic | 35.0% |
| AATCCAAGATGACACAAATC+AGG | + | tig0007112:36989-37008 | Msa1345170:CDS | 35.0% | |
| AGTAAGTGAAGCTTTACAAC+CGG | - | tig0007112:37042-37061 | None:intergenic | 35.0% | |
| AAGCTTCACTTACTGTTACA+AGG | + | tig0007112:37048-37067 | Msa1345170:CDS | 35.0% | |
| AGCTTCACTTACTGTTACAA+GGG | + | tig0007112:37049-37068 | Msa1345170:CDS | 35.0% | |
| CAATGATCATAACCATGCTA+TGG | + | tig0007112:37109-37128 | Msa1345170:CDS | 35.0% | |
| AGATGTCATAAAAAGATGGG+TGG | + | tig0007112:37158-37177 | Msa1345170:CDS | 35.0% | |
| !! | AAGCCTTGTTGAACAGTTTA+AGG | + | tig0007112:37190-37209 | Msa1345170:CDS | 35.0% |
| CTTCCTTAAACTGTTCAACA+AGG | - | tig0007112:37196-37215 | None:intergenic | 35.0% | |
| ! | ATTGTAGCAACTTTTCCTGT+CGG | - | tig0007112:37227-37246 | None:intergenic | 35.0% |
| GGATTCAGCTTTCTCTAATA+GGG | + | tig0007112:37259-37278 | Msa1345170:CDS | 35.0% | |
| CTTTCTCTAATAGGGATTGT+TGG | + | tig0007112:37267-37286 | Msa1345170:CDS | 35.0% | |
| CGAAGTAGGAATTTAGATGT+TGG | + | tig0007112:37308-37327 | Msa1345170:intron | 35.0% | |
| ATTATTCAATCCAACGAACG+GGG | - | tig0007112:37537-37556 | None:intergenic | 35.0% | |
| GATTATTCAATCCAACGAAC+GGG | - | tig0007112:37538-37557 | None:intergenic | 35.0% | |
| ! | AGTCGGAACGTTCTTTTATA+TGG | + | tig0007112:37600-37619 | Msa1345170:intron | 35.0% |
| ! | ACTTTTCTTGAGGCAATGAA+TGG | + | tig0007112:37632-37651 | Msa1345170:intron | 35.0% |
| GATCAAGGTTTAGCTATGAA+AGG | + | tig0007112:37681-37700 | Msa1345170:intron | 35.0% | |
| !! | AGATGAATGGAAGCGTTTAA+TGG | + | tig0007112:37866-37885 | Msa1345170:intron | 35.0% |
| GAAAACAATGAATGGCTTCA+AGG | + | tig0007112:37903-37922 | Msa1345170:CDS | 35.0% | |
| AAAGTAAGCATAAAACTCGG+AGG | + | tig0007112:38129-38148 | Msa1345170:CDS | 35.0% | |
| TACAACATGGTCAAAACTTG+AGG | + | tig0007112:38154-38173 | Msa1345170:CDS | 35.0% | |
| GACACAAAGATTGCTAAATG+TGG | + | tig0007112:38347-38366 | Msa1345170:intron | 35.0% | |
| ! | TCAAATTTACCTGTTGGTGA+TGG | + | tig0007112:38683-38702 | Msa1345170:CDS | 35.0% |
| ACAAACCAAAGGAAGAAAGA+AGG | + | tig0007112:38805-38824 | Msa1345170:CDS | 35.0% | |
| CAAAATTGCAGATTCAAGAG+TGG | + | tig0007112:38845-38864 | Msa1345170:CDS | 35.0% | |
| TTTAATTCCTCGCCAACATT+CGG | - | tig0007112:36792-36811 | None:intergenic | 35.0% | |
| TTGAATTCCATCCCATTACA+AGG | - | tig0007112:36822-36841 | None:intergenic | 35.0% | |
| AAAACCGAAAAGAGCTATCT+TGG | + | tig0007112:36917-36936 | Msa1345170:CDS | 35.0% | |
| ! | CATACCAAGATAGCTCTTTT+CGG | - | tig0007112:36924-36943 | None:intergenic | 35.0% |
| AATCCAAGATGACACAAATC+AGG | + | tig0007112:36989-37008 | Msa1345170:CDS | 35.0% | |
| AGTAAGTGAAGCTTTACAAC+CGG | - | tig0007112:37042-37061 | None:intergenic | 35.0% | |
| AAGCTTCACTTACTGTTACA+AGG | + | tig0007112:37048-37067 | Msa1345170:CDS | 35.0% | |
| AGCTTCACTTACTGTTACAA+GGG | + | tig0007112:37049-37068 | Msa1345170:CDS | 35.0% | |
| CAATGATCATAACCATGCTA+TGG | + | tig0007112:37109-37128 | Msa1345170:CDS | 35.0% | |
| AGATGTCATAAAAAGATGGG+TGG | + | tig0007112:37158-37177 | Msa1345170:CDS | 35.0% | |
| !! | AAGCCTTGTTGAACAGTTTA+AGG | + | tig0007112:37190-37209 | Msa1345170:CDS | 35.0% |
| CTTCCTTAAACTGTTCAACA+AGG | - | tig0007112:37196-37215 | None:intergenic | 35.0% | |
| ! | ATTGTAGCAACTTTTCCTGT+CGG | - | tig0007112:37227-37246 | None:intergenic | 35.0% |
| GGATTCAGCTTTCTCTAATA+GGG | + | tig0007112:37259-37278 | Msa1345170:CDS | 35.0% | |
| CTTTCTCTAATAGGGATTGT+TGG | + | tig0007112:37267-37286 | Msa1345170:CDS | 35.0% | |
| CGAAGTAGGAATTTAGATGT+TGG | + | tig0007112:37308-37327 | Msa1345170:intron | 35.0% | |
| ATTATTCAATCCAACGAACG+GGG | - | tig0007112:37537-37556 | None:intergenic | 35.0% | |
| GATTATTCAATCCAACGAAC+GGG | - | tig0007112:37538-37557 | None:intergenic | 35.0% | |
| ! | AGTCGGAACGTTCTTTTATA+TGG | + | tig0007112:37600-37619 | Msa1345170:intron | 35.0% |
| ! | ACTTTTCTTGAGGCAATGAA+TGG | + | tig0007112:37632-37651 | Msa1345170:intron | 35.0% |
| GATCAAGGTTTAGCTATGAA+AGG | + | tig0007112:37681-37700 | Msa1345170:intron | 35.0% | |
| !! | AGATGAATGGAAGCGTTTAA+TGG | + | tig0007112:37866-37885 | Msa1345170:intron | 35.0% |
| GAAAACAATGAATGGCTTCA+AGG | + | tig0007112:37903-37922 | Msa1345170:CDS | 35.0% | |
| AAAGTAAGCATAAAACTCGG+AGG | + | tig0007112:38129-38148 | Msa1345170:CDS | 35.0% | |
| TACAACATGGTCAAAACTTG+AGG | + | tig0007112:38154-38173 | Msa1345170:CDS | 35.0% | |
| GACACAAAGATTGCTAAATG+TGG | + | tig0007112:38347-38366 | Msa1345170:intron | 35.0% | |
| ! | TCAAATTTACCTGTTGGTGA+TGG | + | tig0007112:38683-38702 | Msa1345170:CDS | 35.0% |
| ACAAACCAAAGGAAGAAAGA+AGG | + | tig0007112:38805-38824 | Msa1345170:CDS | 35.0% | |
| CAAAATTGCAGATTCAAGAG+TGG | + | tig0007112:38845-38864 | Msa1345170:CDS | 35.0% | |
| ! | TAGTGAACCTTGTAATGGGA+TGG | + | tig0007112:36812-36831 | Msa1345170:CDS | 40.0% |
| ! | TAGCCTGATTTGTGTCATCT+TGG | - | tig0007112:36995-37014 | None:intergenic | 40.0% |
| AAGAGTTCATCTTCTCGAAC+CGG | + | tig0007112:37020-37039 | Msa1345170:CDS | 40.0% | |
| GCTTCACTTACTGTTACAAG+GGG | + | tig0007112:37050-37069 | Msa1345170:CDS | 40.0% | |
| ! | TACTGTTACAAGGGGTACAA+CGG | + | tig0007112:37058-37077 | Msa1345170:CDS | 40.0% |
| !!! | TTTTAGGGCTAACCATAGCA+TGG | - | tig0007112:37124-37143 | None:intergenic | 40.0% |
| GGGATTCAGCTTTCTCTAAT+AGG | + | tig0007112:37258-37277 | Msa1345170:CDS | 40.0% | |
| TTCGAGAATCTTCATCGCAT+TGG | - | tig0007112:37403-37422 | None:intergenic | 40.0% | |
| ! | AAAGGGCATACTGTACTTGT+TGG | - | tig0007112:37513-37532 | None:intergenic | 40.0% |
| ! | TATCAGAGCATCATGGATAC+CGG | + | tig0007112:37935-37954 | Msa1345170:CDS | 40.0% |
| CTTAGCGGTAGAAAAAAGAG+AGG | + | tig0007112:38100-38119 | Msa1345170:CDS | 40.0% | |
| AAACTCGGAGGTTTACAACA+TGG | + | tig0007112:38141-38160 | Msa1345170:CDS | 40.0% | |
| CGCTGCAAAATGAAATGACT+AGG | - | tig0007112:38452-38471 | None:intergenic | 40.0% | |
| ! | GTCATTTCATTTTGCAGCGT+TGG | + | tig0007112:38453-38472 | Msa1345170:CDS | 40.0% |
| TGGACTAAGGATGCTAACAA+AGG | + | tig0007112:38473-38492 | Msa1345170:CDS | 40.0% | |
| AAGAAGGATGCATGTTCAAC+AGG | + | tig0007112:38556-38575 | Msa1345170:CDS | 40.0% | |
| AGTTGATCTTGCTGAAGACT+CGG | + | tig0007112:38592-38611 | Msa1345170:CDS | 40.0% | |
| !! | TGGTGATGGAATTTCTCCTT+TGG | + | tig0007112:38697-38716 | Msa1345170:CDS | 40.0% |
| !! | TTCTTCCTTTGGTTTGTGCT+TGG | - | tig0007112:38802-38821 | None:intergenic | 40.0% |
| ACCAAAGGAAGAAAGAAGGA+TGG | + | tig0007112:38809-38828 | Msa1345170:CDS | 40.0% | |
| CCAAAGGAAGAAAGAAGGAT+GGG | + | tig0007112:38810-38829 | Msa1345170:CDS | 40.0% | |
| CAAAGGAAGAAAGAAGGATG+GGG | + | tig0007112:38811-38830 | Msa1345170:CDS | 40.0% | |
| ! | AGAAAAGCATGTCATGAGTG+TGG | + | tig0007112:38902-38921 | Msa1345170:CDS | 40.0% |
| ! | TAGTGAACCTTGTAATGGGA+TGG | + | tig0007112:36812-36831 | Msa1345170:CDS | 40.0% |
| ! | TAGCCTGATTTGTGTCATCT+TGG | - | tig0007112:36995-37014 | None:intergenic | 40.0% |
| AAGAGTTCATCTTCTCGAAC+CGG | + | tig0007112:37020-37039 | Msa1345170:CDS | 40.0% | |
| GCTTCACTTACTGTTACAAG+GGG | + | tig0007112:37050-37069 | Msa1345170:CDS | 40.0% | |
| ! | TACTGTTACAAGGGGTACAA+CGG | + | tig0007112:37058-37077 | Msa1345170:CDS | 40.0% |
| !!! | TTTTAGGGCTAACCATAGCA+TGG | - | tig0007112:37124-37143 | None:intergenic | 40.0% |
| GGGATTCAGCTTTCTCTAAT+AGG | + | tig0007112:37258-37277 | Msa1345170:CDS | 40.0% | |
| TTCGAGAATCTTCATCGCAT+TGG | - | tig0007112:37403-37422 | None:intergenic | 40.0% | |
| ! | AAAGGGCATACTGTACTTGT+TGG | - | tig0007112:37513-37532 | None:intergenic | 40.0% |
| ! | TATCAGAGCATCATGGATAC+CGG | + | tig0007112:37935-37954 | Msa1345170:CDS | 40.0% |
| CTTAGCGGTAGAAAAAAGAG+AGG | + | tig0007112:38100-38119 | Msa1345170:CDS | 40.0% | |
| AAACTCGGAGGTTTACAACA+TGG | + | tig0007112:38141-38160 | Msa1345170:CDS | 40.0% | |
| CGCTGCAAAATGAAATGACT+AGG | - | tig0007112:38452-38471 | None:intergenic | 40.0% | |
| ! | GTCATTTCATTTTGCAGCGT+TGG | + | tig0007112:38453-38472 | Msa1345170:CDS | 40.0% |
| TGGACTAAGGATGCTAACAA+AGG | + | tig0007112:38473-38492 | Msa1345170:CDS | 40.0% | |
| AAGAAGGATGCATGTTCAAC+AGG | + | tig0007112:38556-38575 | Msa1345170:CDS | 40.0% | |
| AGTTGATCTTGCTGAAGACT+CGG | + | tig0007112:38592-38611 | Msa1345170:CDS | 40.0% | |
| !! | TGGTGATGGAATTTCTCCTT+TGG | + | tig0007112:38697-38716 | Msa1345170:CDS | 40.0% |
| !! | TTCTTCCTTTGGTTTGTGCT+TGG | - | tig0007112:38802-38821 | None:intergenic | 40.0% |
| ACCAAAGGAAGAAAGAAGGA+TGG | + | tig0007112:38809-38828 | Msa1345170:CDS | 40.0% | |
| CCAAAGGAAGAAAGAAGGAT+GGG | + | tig0007112:38810-38829 | Msa1345170:CDS | 40.0% | |
| CAAAGGAAGAAAGAAGGATG+GGG | + | tig0007112:38811-38830 | Msa1345170:CDS | 40.0% | |
| ! | AGAAAAGCATGTCATGAGTG+TGG | + | tig0007112:38902-38921 | Msa1345170:CDS | 40.0% |
| TCAATGGGATCTCCGAATGT+TGG | + | tig0007112:36777-36796 | Msa1345170:CDS | 45.0% | |
| AAGGAAGAACAGATACCGAC+AGG | + | tig0007112:37209-37228 | Msa1345170:CDS | 45.0% | |
| TCAAAACTTGAGGTGCATGC+TGG | + | tig0007112:38164-38183 | Msa1345170:CDS | 45.0% | |
| !! | CATTTTGCAGCGTTGGACTA+AGG | + | tig0007112:38460-38479 | Msa1345170:CDS | 45.0% |
| GGAGAAATTCCATCACCAAC+AGG | - | tig0007112:38695-38714 | None:intergenic | 45.0% | |
| !! | TTCTCCTTTGGAATCTAGCC+AGG | + | tig0007112:38709-38728 | Msa1345170:CDS | 45.0% |
| ACATCCTGGCTAGATTCCAA+AGG | - | tig0007112:38716-38735 | None:intergenic | 45.0% | |
| GAACAGCCAGAACTCACTAT+TGG | + | tig0007112:38767-38786 | Msa1345170:CDS | 45.0% | |
| GGGTTTCCAATAGTGAGTTC+TGG | - | tig0007112:38776-38795 | None:intergenic | 45.0% | |
| CCCATCCTTCTTTCTTCCTT+TGG | - | tig0007112:38813-38832 | None:intergenic | 45.0% | |
| TCTTGCAAGTTCTGCTGTTG+TGG | - | tig0007112:38937-38956 | None:intergenic | 45.0% | |
| TCAATGGGATCTCCGAATGT+TGG | + | tig0007112:36777-36796 | Msa1345170:CDS | 45.0% | |
| AAGGAAGAACAGATACCGAC+AGG | + | tig0007112:37209-37228 | Msa1345170:CDS | 45.0% | |
| TCAAAACTTGAGGTGCATGC+TGG | + | tig0007112:38164-38183 | Msa1345170:CDS | 45.0% | |
| !! | CATTTTGCAGCGTTGGACTA+AGG | + | tig0007112:38460-38479 | Msa1345170:CDS | 45.0% |
| GGAGAAATTCCATCACCAAC+AGG | - | tig0007112:38695-38714 | None:intergenic | 45.0% | |
| !! | TTCTCCTTTGGAATCTAGCC+AGG | + | tig0007112:38709-38728 | Msa1345170:CDS | 45.0% |
| ACATCCTGGCTAGATTCCAA+AGG | - | tig0007112:38716-38735 | None:intergenic | 45.0% | |
| GAACAGCCAGAACTCACTAT+TGG | + | tig0007112:38767-38786 | Msa1345170:CDS | 45.0% | |
| GGGTTTCCAATAGTGAGTTC+TGG | - | tig0007112:38776-38795 | None:intergenic | 45.0% | |
| CCCATCCTTCTTTCTTCCTT+TGG | - | tig0007112:38813-38832 | None:intergenic | 45.0% | |
| TCTTGCAAGTTCTGCTGTTG+TGG | - | tig0007112:38937-38956 | None:intergenic | 45.0% | |
| ! | GTTACAAGGGGTACAACGGA+AGG | + | tig0007112:37062-37081 | Msa1345170:CDS | 50.0% |
| GGGGTACAACGGAAGGTAAT+TGG | + | tig0007112:37069-37088 | Msa1345170:CDS | 50.0% | |
| AATCCAACGAACGGGGCAAA+GGG | - | tig0007112:37530-37549 | None:intergenic | 50.0% | |
| ! | CAGAGGCGATGTCTAGTTTC+TGG | - | tig0007112:37726-37745 | None:intergenic | 50.0% |
| GCCTCTGCTTGTGGCATATT+CGG | + | tig0007112:37739-37758 | Msa1345170:intron | 50.0% | |
| TCCGAATATGCCACAAGCAG+AGG | - | tig0007112:37743-37762 | None:intergenic | 50.0% | |
| !! | CTTTGGTTTGTGCTTGGCGT+GGG | - | tig0007112:38796-38815 | None:intergenic | 50.0% |
| TGTCATGAGTGTGGTGCACA+TGG | + | tig0007112:38911-38930 | Msa1345170:CDS | 50.0% | |
| ! | GTTACAAGGGGTACAACGGA+AGG | + | tig0007112:37062-37081 | Msa1345170:CDS | 50.0% |
| GGGGTACAACGGAAGGTAAT+TGG | + | tig0007112:37069-37088 | Msa1345170:CDS | 50.0% | |
| AATCCAACGAACGGGGCAAA+GGG | - | tig0007112:37530-37549 | None:intergenic | 50.0% | |
| ! | CAGAGGCGATGTCTAGTTTC+TGG | - | tig0007112:37726-37745 | None:intergenic | 50.0% |
| GCCTCTGCTTGTGGCATATT+CGG | + | tig0007112:37739-37758 | Msa1345170:intron | 50.0% | |
| TCCGAATATGCCACAAGCAG+AGG | - | tig0007112:37743-37762 | None:intergenic | 50.0% | |
| !! | CTTTGGTTTGTGCTTGGCGT+GGG | - | tig0007112:38796-38815 | None:intergenic | 50.0% |
| TGTCATGAGTGTGGTGCACA+TGG | + | tig0007112:38911-38930 | Msa1345170:CDS | 50.0% | |
| CAATCCAACGAACGGGGCAA+AGG | - | tig0007112:37531-37550 | None:intergenic | 55.0% | |
| CTAGACATCGCCTCTGCTTG+TGG | + | tig0007112:37730-37749 | Msa1345170:intron | 55.0% | |
| ! | GGCGCTTGATAGCAGCTTAG+CGG | + | tig0007112:38085-38104 | Msa1345170:CDS | 55.0% |
| !! | CCTTTGGTTTGTGCTTGGCG+TGG | - | tig0007112:38797-38816 | None:intergenic | 55.0% |
| CCACGCCAAGCACAAACCAA+AGG | + | tig0007112:38794-38813 | Msa1345170:CDS | 55.0% | |
| CAATCCAACGAACGGGGCAA+AGG | - | tig0007112:37531-37550 | None:intergenic | 55.0% | |
| CTAGACATCGCCTCTGCTTG+TGG | + | tig0007112:37730-37749 | Msa1345170:intron | 55.0% | |
| ! | GGCGCTTGATAGCAGCTTAG+CGG | + | tig0007112:38085-38104 | Msa1345170:CDS | 55.0% |
| !! | CCTTTGGTTTGTGCTTGGCG+TGG | - | tig0007112:38797-38816 | None:intergenic | 55.0% |
| CCACGCCAAGCACAAACCAA+AGG | + | tig0007112:38794-38813 | Msa1345170:CDS | 55.0% | |
| GGGATCTCCGAATGTTGGCG+AGG | + | tig0007112:36782-36801 | Msa1345170:CDS | 60.0% | |
| ATGCCCTTTGCCCCGTTCGT+TGG | + | tig0007112:37524-37543 | Msa1345170:intron | 60.0% | |
| GGGATCTCCGAATGTTGGCG+AGG | + | tig0007112:36782-36801 | Msa1345170:CDS | 60.0% | |
| ATGCCCTTTGCCCCGTTCGT+TGG | + | tig0007112:37524-37543 | Msa1345170:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0007112 | gene | 36744 | 38976 | 36744 | ID=Msa1345170;Name=Msa1345170 |
| tig0007112 | mRNA | 36744 | 38976 | 36744 | ID=Msa1345170-mRNA-1;Parent=Msa1345170;Name=Msa1345170-mRNA-1;_AED=0.06;_eAED=0.08;_QI=0|0|0|1|1|1|3|0|531 |
| tig0007112 | exon | 36744 | 37311 | 36744 | ID=Msa1345170-mRNA-1:exon:4880;Parent=Msa1345170-mRNA-1 |
| tig0007112 | exon | 37868 | 38324 | 37868 | ID=Msa1345170-mRNA-1:exon:4881;Parent=Msa1345170-mRNA-1 |
| tig0007112 | exon | 38406 | 38976 | 38406 | ID=Msa1345170-mRNA-1:exon:4882;Parent=Msa1345170-mRNA-1 |
| tig0007112 | CDS | 36744 | 37311 | 36744 | ID=Msa1345170-mRNA-1:cds;Parent=Msa1345170-mRNA-1 |
| tig0007112 | CDS | 37868 | 38324 | 37868 | ID=Msa1345170-mRNA-1:cds;Parent=Msa1345170-mRNA-1 |
| tig0007112 | CDS | 38406 | 38976 | 38406 | ID=Msa1345170-mRNA-1:cds;Parent=Msa1345170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
