AlfalfaGEDB | Msa1345440

M. sativa cultivar zhongmu-4 / Msa1345440

KEGG: -
GO: GO:0001666 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006464 GO:0006468 GO:0006629 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009723 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009750 GO:0009756 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010104 GO:0010105 GO:0010182 GO:0010646 GO:0010648 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019752 GO:0023051 GO:0023052 GO:0023057 GO:0031984 GO:0034284 GO:0034285 GO:0036211 GO:0036293 GO:0040034 GO:0042175 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046777 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051302 GO:0051716 GO:0065007 GO:0065008 GO:0070297 GO:0070298 GO:0070482 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:2000026 GO:2000035 GO:2000069 GO:2000280
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1345440	ABN07953.1	100.000	91	0	0	1	91	192	282	3.84e-59	192

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1345440	sp\|Q9FPR3\|EDR1_ARATH	58.571	70	29	0	1	70	857	926	3.85e-23	94.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1345440	A2Q2V9	100.000	91	0	0	1	91	192	282	1.83e-59	192

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1345440	MtrunA17_Chr2g0294351	100.000	91	0	0	1	91	654	744	4.32e-60	194
Msa1345440	MtrunA17_Chr4g0068411	76.667	90	21	0	1	90	648	737	2.94e-38	134
Msa1345440	MtrunA17_Chr1g0151541	57.534	73	31	0	1	73	851	923	3.68e-26	100
Msa1345440	MtrunA17_Chr1g0191171	54.545	77	35	0	1	77	877	953	2.25e-24	95.1
Msa1345440	MtrunA17_Chr6g0482711	57.143	70	30	0	1	70	848	917	4.48e-24	94.4
Msa1345440	MtrunA17_Chr8g0392871	47.778	90	39	1	1	82	927	1016	1.77e-23	92.8
Msa1345440	MtrunA17_Chr5g0397931	53.846	65	30	0	1	65	611	675	5.70e-23	91.3
Msa1345440	MtrunA17_Chr1g0179331	50.000	68	34	0	1	68	745	812	3.03e-20	83.6
Msa1345440	MtrunA17_Chr3g0132791	50.000	68	34	0	1	68	843	910	4.05e-19	80.1
Msa1345440	MtrunA17_Chr1g0171451	47.059	68	36	0	1	68	604	671	1.82e-18	78.2

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa1345440	AT3G06640.2	74.419	86	22	1	86	634	719	1.59e-42	147
Msa1345440	AT3G06640.3	74.419	86	22	1	86	634	719	1.59e-42	147
Msa1345440	AT3G06640.1	77.500	80	18	1	80	634	713	1.77e-41	144
Msa1345440	AT5G49470.1	67.816	87	28	1	87	392	478	2.15e-41	141
Msa1345440	AT5G49470.7	67.816	87	28	1	87	552	638	4.19e-41	142
Msa1345440	AT1G67890.1	70.732	82	24	1	82	674	755	4.42e-41	143
Msa1345440	AT5G49470.3	67.816	87	28	1	87	679	765	5.66e-41	142
Msa1345440	AT3G06620.1	73.171	82	22	1	82	682	763	5.75e-41	142
Msa1345440	AT5G49470.4	67.816	87	28	1	87	653	739	6.48e-41	142
Msa1345440	AT5G49470.2	67.816	87	28	1	87	740	826	7.58e-41	142

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Find 43 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGCAGCCAGATCTGCTGGT+GGG	0.611552	tig0007163:+846	Msa1345440:CDS
AATTCATAAACCTCTGATAA+TGG	0.333663	tig0007163:-1266	None:intergenic
ACAAAATAACTACAATAGTT+TGG	0.364744	tig0007163:-1042	None:intergenic
ACAGCTTTGGGGTGATAATG+TGG	0.526146	tig0007163:+137	Msa1345440:exon
ACCAACATTCCAGGAACTTC+TGG	0.366306	tig0007163:+781	Msa1345440:CDS
ACTATTAAGTTTAAGATCTA+TGG	0.271950	tig0007163:-1069	None:intergenic
AGCAGCCAGATCTGCTGGTG+GGG	0.516345	tig0007163:+847	Msa1345440:CDS
AGGTCCGACGTTTACAGCTT+TGG	0.324983	tig0007163:+124	Msa1345440:intron
ATTGCATTGAGAGTGTCCCA+AGG	0.679627	tig0007163:-181	None:intergenic
CAAGCAGCCAGATCTGCTGG+TGG	0.652620	tig0007163:+845	Msa1345440:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTATATTACTATCAGTGATC+CGG	+	tig0007163:751-770	Msa1345440:intron	30.0%
TTTGGCAAGATTTAATGTTG+TGG	-	tig0007163:1027-1046	None:intergenic	30.0%
GTATATTACTATCAGTGATC+CGG	+	tig0007163:751-770	Msa1345440:intron	30.0%
TTTGGCAAGATTTAATGTTG+TGG	-	tig0007163:1027-1046	None:intergenic	30.0%
CATACACACTTCTCATTTGA+GGG	-	tig0007163:15-34	None:intergenic	35.0%
GCACAAAAAGATATCCAAAG+TGG	-	tig0007163:90-109	None:intergenic	35.0%
TTGCAACAGAAAAAATCCCT+TGG	+	tig0007163:164-183	Msa1345440:CDS	35.0%
TGCAACAGAAAAAATCCCTT+GGG	+	tig0007163:165-184	Msa1345440:CDS	35.0%
TTCATATGTACATGAACCAC+AGG	+	tig0007163:222-241	Msa1345440:intron	35.0%
AATGAAAAACCGCTGCAAAA+TGG	+	tig0007163:297-316	Msa1345440:intron	35.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0007163	gene	1	1298	1	ID=Msa1345440;Name=Msa1345440
tig0007163	mRNA	1	1298	1	ID=Msa1345440-mRNA-1;Parent=Msa1345440;Name=Msa1345440-mRNA-1;_AED=0.12;_eAED=0.12;_QI=53\|1\|1\|1\|0.66\|0.75\|4\|406\|91
tig0007163	exon	1	25	1	ID=Msa1345440-mRNA-1:exon:4993;Parent=Msa1345440-mRNA-1
tig0007163	exon	126	207	126	ID=Msa1345440-mRNA-1:exon:4994;Parent=Msa1345440-mRNA-1
tig0007163	exon	442	536	442	ID=Msa1345440-mRNA-1:exon:4995;Parent=Msa1345440-mRNA-1
tig0007163	exon	766	1298	766	ID=Msa1345440-mRNA-1:exon:4996;Parent=Msa1345440-mRNA-1
tig0007163	five_prime_UTR	1	25	1	ID=Msa1345440-mRNA-1:five_prime_utr;Parent=Msa1345440-mRNA-1
tig0007163	five_prime_UTR	126	153	126	ID=Msa1345440-mRNA-1:five_prime_utr;Parent=Msa1345440-mRNA-1
tig0007163	CDS	154	207	154	ID=Msa1345440-mRNA-1:cds;Parent=Msa1345440-mRNA-1
tig0007163	CDS	442	536	442	ID=Msa1345440-mRNA-1:cds;Parent=Msa1345440-mRNA-1
tig0007163	CDS	766	892	766	ID=Msa1345440-mRNA-1:cds;Parent=Msa1345440-mRNA-1
tig0007163	three_prime_UTR	893	1298	893	ID=Msa1345440-mRNA-1:three_prime_utr;Parent=Msa1345440-mRNA-1

Gene Sequence	>Msa1345440 ATGTGGGAACTTGCAACAGAAAAAATCCCTTGGGACACTCTCAATGCAATGCAGGTTATTGGAGCTGTAGGATTTATGAACCATCGGCTAGAAATTCCGGAAGATATTGATCCACAGTGGGCTTCTATAATCGAGAGTTGTTGGCACACTGATCCGGCTCTCCGACCAACATTCCAGGAACTTCTGGAAAGGCTTAAAGAACTTCAGAGACGGTATGCCATTCAGTTCCAAGCAGCCAGATCTGCTGGTGGGGAAAAGACTCAAAAAGAGTCCTAG
Protein sequence	>Msa1345440 MWELATEKIPWDTLNAMQVIGAVGFMNHRLEIPEDIDPQWASIIESCWHTDPALRPTFQELLERLKELQRRYAIQFQAARSAGGEKTQKES*