AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1345710

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1345710 MtrunA17_Chr5g0417001 92.768 401 17 3 1 399 1 391 0.0 743
Msa1345710 MtrunA17_Chr8g0361731 63.403 429 93 15 1 399 1 395 3.04e-174 491
Msa1345710 MtrunA17_Chr6g0453131 47.222 432 154 17 1 399 1 391 3.22e-116 344
Msa1345710 MtrunA17_Chr5g0442771 53.390 236 96 5 6 234 10 238 5.88e-79 246
Msa1345710 MtrunA17_Chr2g0311651 57.547 212 74 6 6 203 16 225 4.92e-76 238
Msa1345710 MtrunA17_Chr2g0311661 61.453 179 55 4 11 179 18 192 1.95e-73 231
Msa1345710 MtrunA17_Chr4g0047841 50.838 179 71 2 14 176 15 192 1.32e-61 202
Msa1345710 MtrunA17_Chr2g0318101 52.381 168 67 2 16 175 17 179 1.22e-60 200
Msa1345710 MtrunA17_Chr4g0076731 54.938 162 62 3 12 173 52 202 7.09e-60 200
Msa1345710 MtrunA17_Chr2g0326361 51.744 172 79 2 1 172 1 168 4.60e-59 195
Msa1345710 MtrunA17_Chr7g0252971 46.445 211 93 4 16 219 10 207 7.49e-59 195
Msa1345710 MtrunA17_Chr3g0124761 48.705 193 79 4 16 200 9 189 1.27e-58 192
Msa1345710 MtrunA17_Chr5g0417791 39.695 262 140 8 16 269 5 256 5.81e-58 190
Msa1345710 MtrunA17_Chr8g0384721 53.503 157 66 2 16 172 9 158 2.50e-56 186
Msa1345710 MtrunA17_Chr2g0318081 53.039 181 74 5 16 196 18 187 3.01e-56 188
Msa1345710 MtrunA17_Chr4g0042561 43.210 243 113 7 16 249 11 237 4.57e-55 182
Msa1345710 MtrunA17_Chr7g0263931 53.125 160 71 2 16 175 13 168 5.43e-55 184
Msa1345710 MtrunA17_Chr4g0018391 48.256 172 74 3 14 182 7 166 7.83e-54 182
Msa1345710 MtrunA17_Chr3g0130731 52.229 157 67 2 16 172 9 157 1.00e-53 180
Msa1345710 MtrunA17_Chr8g0359921 53.614 166 68 4 16 181 16 172 1.28e-53 181
Msa1345710 MtrunA17_Chr8g0372121 43.299 194 95 3 10 200 2 183 3.13e-53 179
Msa1345710 MtrunA17_Chr5g0405211 45.161 186 85 5 8 188 2 175 2.94e-52 178
Msa1345710 MtrunA17_Chr5g0398971 47.126 174 79 3 14 184 7 170 3.55e-52 177
Msa1345710 MtrunA17_Chr3g0091921 50.549 182 80 4 8 189 10 181 6.92e-52 175
Msa1345710 MtrunA17_Chr4g0060931 49.153 177 76 4 8 182 13 177 7.33e-52 177
Msa1345710 MtrunA17_Chr4g0056541 47.337 169 74 3 14 179 7 163 2.17e-51 176
Msa1345710 MtrunA17_Chr2g0309891 51.250 160 67 4 16 173 8 158 2.23e-51 175
Msa1345710 MtrunA17_Chr6g0453451 53.797 158 65 3 16 173 22 171 2.79e-50 172
Msa1345710 MtrunA17_Chr4g0038751 46.552 174 76 3 11 180 12 172 1.47e-49 169
Msa1345710 MtrunA17_Chr1g0200561 39.130 230 109 6 3 227 8 211 2.38e-49 170
Msa1345710 MtrunA17_Chr2g0316971 48.485 165 79 2 11 175 20 178 2.51e-49 171
Msa1345710 MtrunA17_Chr6g0481091 42.857 189 95 4 16 202 8 185 2.95e-49 166
Msa1345710 MtrunA17_Chr4g0017921 49.390 164 67 3 14 174 8 158 1.18e-48 168
Msa1345710 MtrunA17_Chr6g0461661 46.667 180 84 4 9 184 11 182 1.44e-48 169
Msa1345710 MtrunA17_Chr7g0253011 46.703 182 85 4 5 182 8 181 1.45e-48 169
Msa1345710 MtrunA17_Chr3g0109821 43.915 189 92 6 16 202 8 184 3.02e-48 174
Msa1345710 MtrunA17_Chr6g0484441 45.562 169 80 3 10 178 1 157 5.24e-48 166
Msa1345710 MtrunA17_Chr3g0139331 47.159 176 78 3 1 175 1 162 8.54e-48 166
Msa1345710 MtrunA17_Chr7g0214071 48.603 179 78 3 1 178 1 166 1.46e-47 162
Msa1345710 MtrunA17_Chr2g0309331 41.799 189 94 4 13 196 9 186 9.92e-47 163
Msa1345710 MtrunA17_Chr5g0433781 46.250 160 74 3 16 173 8 157 2.18e-46 168
Msa1345710 MtrunA17_Chr5g0400461 48.193 166 64 5 16 172 8 160 2.81e-46 162
Msa1345710 MtrunA17_Chr4g0054791 36.755 302 165 10 16 308 8 292 5.45e-46 160
Msa1345710 MtrunA17_Chr8g0346001 46.429 168 78 4 14 174 15 177 6.37e-46 163
Msa1345710 MtrunA17_Chr1g0147421 45.143 175 82 4 1 173 15 177 9.47e-46 161
Msa1345710 MtrunA17_Chr5g0428991 48.148 162 72 4 17 176 28 179 1.92e-45 166
Msa1345710 MtrunA17_Chr3g0128151 42.029 207 99 6 17 219 25 214 4.66e-45 164
Msa1345710 MtrunA17_Chr1g0183741 37.156 218 115 4 16 231 12 209 1.14e-44 155
Msa1345710 MtrunA17_Chr7g0217721 48.503 167 73 5 17 174 22 184 3.12e-44 157
Msa1345710 MtrunA17_Chr2g0312321 45.087 173 84 4 10 182 7 168 7.10e-44 154
Msa1345710 MtrunA17_Chr1g0201021 45.963 161 75 3 15 173 20 170 9.41e-44 160
Msa1345710 MtrunA17_Chr3g0144271 52.448 143 66 2 3 143 11 153 1.93e-43 156
Msa1345710 MtrunA17_Chr3g0130101 44.172 163 79 4 12 172 5 157 2.24e-43 154
Msa1345710 MtrunA17_Chr8g0364791 41.040 173 90 4 14 184 6 168 4.21e-43 156
Msa1345710 MtrunA17_Chr3g0128111 42.073 164 83 4 17 178 45 198 4.89e-43 150
Msa1345710 MtrunA17_Chr7g0217711 52.344 128 59 1 17 144 22 147 2.42e-42 146
Msa1345710 MtrunA17_Chr8g0384201 39.306 173 93 3 14 184 6 168 2.94e-41 152
Msa1345710 MtrunA17_Chr7g0261411 41.935 155 78 1 16 170 12 154 3.91e-41 147
Msa1345710 MtrunA17_Chr1g0197351 43.860 171 74 4 14 174 42 200 1.29e-40 150
Msa1345710 MtrunA17_Chr1g0197361 44.172 163 77 5 16 175 10 161 3.40e-40 150
Msa1345710 MtrunA17_Chr8g0385991 44.805 154 80 2 16 169 16 164 2.57e-39 140
Msa1345710 MtrunA17_Chr3g0092671 44.785 163 76 6 16 175 7 158 4.77e-39 146
Msa1345710 MtrunA17_Chr3g0131911 42.515 167 90 3 16 180 16 178 2.78e-36 132
Msa1345710 MtrunA17_Chr8g0345671 45.865 133 68 3 17 146 14 145 9.42e-34 129
Msa1345710 MtrunA17_Chr4g0026141 44.118 136 70 3 10 140 1 135 1.64e-33 125
Msa1345710 MtrunA17_Chr2g0321631 46.617 133 60 5 16 140 6 135 1.19e-32 123
Msa1345710 MtrunA17_Chr7g0266701 36.585 164 94 5 16 173 6 165 2.03e-32 122
Msa1345710 MtrunA17_Chr8g0345691 46.269 134 67 4 10 140 9 140 2.94e-32 126
Msa1345710 MtrunA17_Chr4g0050701 36.943 157 89 2 16 172 13 159 1.30e-29 113
Msa1345710 MtrunA17_Chr3g0113001 44.355 124 62 3 59 182 10 126 5.43e-28 112
Msa1345710 MtrunA17_Chr8g0345711 40.945 127 71 3 17 140 15 140 8.44e-28 108
Msa1345710 MtrunA17_Chr2g0321741 37.013 154 75 5 34 182 12 148 6.66e-26 107
Msa1345710 MtrunA17_Chr8g0345731 42.424 132 70 5 15 140 24 155 1.22e-25 102
Msa1345710 MtrunA17_Chr8g0345721 33.951 162 74 3 17 146 38 198 1.56e-23 97.4
Msa1345710 MtrunA17_Chr8g0345741 39.496 119 68 3 25 140 2 119 1.28e-22 93.2
Msa1345710 MtrunA17_Chr8g0384351 33.533 167 81 6 16 182 12 148 1.02e-19 86.3
Msa1345710 MtrunA17_Chr3g0113031 44.898 98 48 3 77 174 3 94 1.80e-19 87.4
Msa1345710 MtrunA17_Chr7g0243371 46.753 77 41 0 67 143 17 93 2.38e-19 83.2
Msa1345710 MtrunA17_Chr8g0345701 35.461 141 71 5 17 140 10 147 4.40e-19 84.3
Msa1345710 MtrunA17_Chr7g0251651 34.058 138 84 5 11 145 14 147 4.51e-18 82.0
Msa1345710 MtrunA17_Chr7g0251671 30.370 135 86 5 17 148 13 142 3.21e-17 78.6
Msa1345710 MtrunA17_Chr7g0251661 32.374 139 87 5 12 147 7 141 4.12e-17 78.2
Msa1345710 MtrunA17_Chr3g0130321 30.247 162 97 6 16 171 9 160 4.80e-15 73.6
Msa1345710 MtrunA17_Chr1g0194791 59.574 47 18 1 16 61 48 94 5.21e-13 64.7
Msa1345710 MtrunA17_Chr7g0274971 27.907 172 103 7 20 183 11 169 7.26e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1345710 AT1G26870.1 56.442 326 121 7 2 313 3 321 3.89e-112 335
Msa1345710 AT5G39820.1 67.839 199 50 3 2 186 8 206 3.00e-98 296
Msa1345710 AT2G43000.1 63.793 174 52 3 6 179 10 172 4.19e-76 238
Msa1345710 AT3G12910.1 46.094 256 128 5 6 254 13 265 8.50e-67 214
Msa1345710 AT2G02450.2 55.625 160 60 3 13 172 50 198 4.98e-60 200
Msa1345710 AT3G04070.2 54.217 166 68 3 16 176 12 174 6.80e-59 195
Msa1345710 AT3G15510.1 52.695 167 66 2 18 176 21 182 8.65e-59 196
Msa1345710 AT1G61110.1 53.179 173 73 3 16 181 18 189 3.88e-57 190
Msa1345710 AT3G04070.1 49.451 182 68 3 16 176 12 190 2.11e-56 189
Msa1345710 AT1G01720.1 51.497 167 74 2 14 180 7 166 5.69e-56 186
Msa1345710 AT1G69490.1 52.174 161 71 3 16 176 11 165 2.19e-55 184
Msa1345710 AT4G27410.2 49.724 181 79 4 16 196 16 184 7.59e-55 183
Msa1345710 AT1G77450.1 51.829 164 71 2 16 179 12 167 9.86e-55 181
Msa1345710 AT3G15500.1 53.939 165 66 4 16 180 16 170 2.26e-54 182
Msa1345710 AT1G52890.1 51.705 176 74 5 16 191 16 180 2.68e-54 182
Msa1345710 AT5G08790.1 52.727 165 71 3 12 175 4 162 4.45e-54 181
Msa1345710 AT4G36160.1 48.876 178 76 4 14 188 10 175 5.55e-54 183
Msa1345710 AT4G36160.3 48.876 178 76 4 14 188 10 175 5.55e-54 183
Msa1345710 AT5G63790.1 47.120 191 88 4 12 201 47 225 6.03e-54 181
Msa1345710 AT1G76420.1 46.809 188 86 2 2 189 15 188 6.26e-54 182
Msa1345710 AT5G63790.2 47.120 191 88 4 12 201 57 235 6.60e-54 182
Msa1345710 AT4G36160.2 48.876 178 76 4 14 188 14 179 7.33e-54 183
Msa1345710 AT1G52880.1 55.952 168 64 3 18 179 21 184 8.97e-54 181
Msa1345710 AT5G07680.1 44.934 227 105 6 4 220 9 225 2.16e-53 181
Msa1345710 AT5G07680.2 46.047 215 98 5 16 220 5 211 1.80e-52 177
Msa1345710 AT5G39610.1 43.162 234 113 5 1 232 9 224 1.95e-52 177
Msa1345710 AT2G18060.3 47.191 178 78 5 14 188 9 173 3.27e-52 178
Msa1345710 AT2G18060.1 47.191 178 78 5 14 188 9 173 3.27e-52 178
Msa1345710 AT5G61430.1 47.514 181 81 4 4 182 8 176 6.15e-52 177
Msa1345710 AT5G62380.2 49.398 166 69 4 14 176 7 160 1.58e-51 176
Msa1345710 AT5G62380.1 49.398 166 69 4 14 176 7 160 1.58e-51 176
Msa1345710 AT1G12260.2 47.929 169 73 3 14 179 7 163 1.62e-51 176
Msa1345710 AT1G12260.1 47.929 169 73 3 14 179 7 163 1.93e-51 177
Msa1345710 AT2G17040.1 49.711 173 70 4 12 180 4 163 1.99e-51 174
Msa1345710 AT3G18400.1 49.708 171 74 4 10 180 1 159 6.92e-51 173
Msa1345710 AT4G10350.1 50.000 164 69 3 14 174 9 162 1.01e-50 174
Msa1345710 AT2G24430.2 46.199 171 83 1 8 178 10 171 1.39e-50 173
Msa1345710 AT2G24430.1 46.199 171 83 1 8 178 10 171 1.39e-50 173
Msa1345710 AT4G27410.3 45.455 198 79 5 16 196 16 201 1.56e-50 172
Msa1345710 AT5G18270.1 48.837 172 76 4 5 174 13 174 3.78e-50 172
Msa1345710 AT3G04060.1 48.851 174 76 4 1 172 9 171 5.48e-50 172
Msa1345710 AT3G17730.1 50.311 161 64 4 16 172 8 156 5.57e-50 169
Msa1345710 AT1G62700.1 46.784 171 76 3 14 181 7 165 1.11e-49 172
Msa1345710 AT1G62700.2 46.784 171 76 3 14 181 7 165 1.11e-49 172
Msa1345710 AT3G29035.1 51.111 180 73 6 3 179 15 182 2.24e-49 169
Msa1345710 AT5G18270.2 48.256 172 77 4 5 174 13 174 2.55e-49 170
Msa1345710 AT3G03200.1 46.067 178 84 5 16 190 8 176 1.20e-48 172
Msa1345710 AT1G33280.1 49.390 164 67 3 14 174 8 158 1.72e-48 167
Msa1345710 AT4G17980.2 47.170 159 76 2 16 172 8 160 1.75e-48 166
Msa1345710 AT4G17980.1 47.170 159 76 2 16 172 8 160 1.81e-48 166
Msa1345710 AT1G71930.2 40.367 218 111 7 16 229 11 213 2.70e-48 167
Msa1345710 AT1G71930.1 40.367 218 111 7 16 229 11 213 2.70e-48 167
Msa1345710 AT5G66300.1 47.977 173 74 5 14 181 12 173 3.06e-48 166
Msa1345710 AT5G53950.1 47.953 171 83 1 12 182 15 179 4.06e-48 168
Msa1345710 AT1G65910.1 48.125 160 71 3 16 173 8 157 7.66e-48 172
Msa1345710 AT2G46770.1 45.614 171 79 4 14 174 16 182 2.34e-47 166
Msa1345710 AT5G17260.1 47.500 160 71 4 16 172 8 157 4.39e-47 167
Msa1345710 AT5G13180.1 48.750 160 70 2 16 175 16 163 6.56e-47 161
Msa1345710 AT3G15170.1 47.929 169 81 3 11 178 16 178 6.81e-47 163
Msa1345710 AT1G54330.1 47.590 166 72 4 16 179 8 160 1.09e-45 159
Msa1345710 AT3G61910.1 44.022 184 92 6 14 189 11 191 1.35e-45 160
Msa1345710 AT3G10500.1 46.951 164 75 4 14 175 9 162 1.64e-45 165
Msa1345710 AT3G12977.1 44.633 177 87 4 3 177 5 172 1.74e-45 158
Msa1345710 AT3G10490.1 45.833 168 70 4 14 174 27 180 3.66e-45 156
Msa1345710 AT4G35580.3 48.734 158 69 4 17 172 12 159 5.49e-45 163
Msa1345710 AT4G35580.1 48.734 158 69 4 17 172 12 159 5.74e-45 162
Msa1345710 AT5G46590.2 55.469 128 54 2 16 141 8 134 5.97e-45 157
Msa1345710 AT1G79580.3 45.732 164 74 3 14 174 17 168 5.99e-45 159
Msa1345710 AT1G79580.5 45.732 164 74 3 14 174 17 168 5.99e-45 159
Msa1345710 AT1G79580.4 45.732 164 74 3 14 174 17 168 5.99e-45 159
Msa1345710 AT1G79580.2 45.732 164 74 3 14 174 17 168 5.99e-45 159
Msa1345710 AT1G79580.1 45.732 164 74 3 14 174 17 168 5.99e-45 159
Msa1345710 AT4G35580.2 48.734 158 69 4 17 172 12 159 6.30e-45 163
Msa1345710 AT3G10480.1 46.061 165 74 4 14 174 27 180 6.50e-45 161
Msa1345710 AT3G10480.2 45.029 171 66 4 14 174 27 179 7.61e-45 161
Msa1345710 AT5G46590.1 55.469 128 54 2 16 141 8 134 9.32e-45 157
Msa1345710 AT1G33060.1 45.399 163 77 3 12 172 22 174 9.89e-45 164
Msa1345710 AT1G33060.2 45.399 163 77 3 12 172 22 174 1.04e-44 164
Msa1345710 AT1G56010.2 48.750 160 70 5 16 172 21 171 1.49e-44 157
Msa1345710 AT1G32770.1 44.828 174 73 5 14 174 16 179 1.75e-44 158
Msa1345710 AT3G10490.2 45.833 168 70 4 14 174 27 180 6.99e-44 158
Msa1345710 AT1G34180.3 42.703 185 87 4 16 191 18 192 7.13e-44 158
Msa1345710 AT5G24590.2 45.402 174 83 4 4 174 2 166 9.52e-44 158
Msa1345710 AT5G04410.1 45.732 164 77 3 14 175 9 162 1.35e-43 160
Msa1345710 AT1G34180.1 42.703 185 87 4 16 191 18 192 5.50e-43 158
Msa1345710 AT1G32510.1 42.442 172 85 3 16 180 8 172 1.66e-42 150
Msa1345710 AT3G49530.2 43.671 158 78 3 17 172 16 164 4.24e-42 153
Msa1345710 AT1G34190.1 45.679 162 76 3 16 175 18 169 4.40e-42 155
Msa1345710 AT1G34180.4 39.801 201 90 4 16 195 18 208 9.46e-42 153
Msa1345710 AT3G49530.1 44.099 161 78 4 15 172 13 164 1.19e-41 153
Msa1345710 AT2G33480.1 44.944 178 84 5 1 177 1 165 4.72e-41 146
Msa1345710 AT2G33480.2 44.944 178 82 5 1 177 1 163 6.34e-41 146
Msa1345710 AT1G34180.2 40.102 197 87 4 16 191 18 204 7.27e-41 152
Msa1345710 AT5G09330.5 41.615 161 82 3 14 172 6 156 1.17e-40 150
Msa1345710 AT5G09330.2 41.615 161 82 3 14 172 6 156 1.17e-40 150
Msa1345710 AT5G09330.4 41.615 161 82 3 14 172 6 156 1.17e-40 150
Msa1345710 AT5G09330.3 41.615 161 82 3 14 172 6 156 1.17e-40 150
Msa1345710 AT5G09330.1 41.615 161 82 3 14 172 6 156 1.17e-40 150
Msa1345710 AT4G28530.1 39.888 178 79 3 16 177 12 177 6.73e-40 145
Msa1345710 AT3G10480.3 38.889 198 73 5 14 174 27 213 1.04e-38 145
Msa1345710 AT5G22290.1 41.520 171 80 5 14 180 21 175 1.07e-38 142
Msa1345710 AT5G64060.1 33.688 282 147 13 14 283 6 259 1.47e-38 142
Msa1345710 AT3G44290.2 46.825 126 64 2 15 139 15 138 8.82e-37 134
Msa1345710 AT2G27300.1 43.750 128 69 2 13 139 13 138 1.90e-36 136
Msa1345710 AT3G44290.1 46.825 126 64 2 15 139 15 138 2.84e-36 135
Msa1345710 AT2G43000.2 61.538 104 29 3 76 179 2 94 5.83e-35 128
Msa1345710 AT5G04395.1 42.857 140 66 2 16 141 30 169 1.53e-33 124
Msa1345710 AT5G61430.2 51.754 114 43 3 62 173 1 104 5.82e-33 125
Msa1345710 AT5G22380.1 34.199 231 130 11 11 234 3 218 1.12e-31 120
Msa1345710 AT1G32870.2 42.169 166 80 5 14 175 10 163 1.21e-31 126
Msa1345710 AT1G32870.1 42.169 166 80 5 14 175 10 163 1.30e-31 126
Msa1345710 AT1G32870.3 42.169 166 80 5 14 175 46 199 2.50e-31 125
Msa1345710 AT5G64530.1 37.870 169 87 3 16 178 5 161 2.91e-31 118
Msa1345710 AT4G10350.2 50.877 114 46 2 61 174 12 115 6.81e-31 120
Msa1345710 AT3G12977.2 48.696 115 50 3 63 177 14 119 2.73e-30 116
Msa1345710 AT5G64530.2 44.882 127 58 2 16 142 5 119 5.04e-30 114
Msa1345710 AT3G44350.2 31.739 230 129 8 10 222 1 219 1.62e-29 115
Msa1345710 AT1G56010.1 48.649 111 50 3 62 172 1 104 1.68e-28 112
Msa1345710 AT3G44350.1 39.130 138 74 4 10 140 1 135 5.21e-28 108
Msa1345710 AT4G01550.1 29.392 296 172 10 15 293 5 280 1.60e-27 114
Msa1345710 AT4G01520.1 38.462 143 81 5 17 154 7 147 4.17e-25 104
Msa1345710 AT4G01540.3 39.310 145 81 5 15 154 5 147 6.93e-25 105
Msa1345710 AT4G01540.4 39.310 145 81 5 15 154 5 147 1.06e-24 104
Msa1345710 AT4G01540.1 39.310 145 81 5 15 154 5 147 1.45e-24 105
Msa1345710 AT4G01540.2 39.310 145 81 5 15 154 5 147 1.50e-24 104
Msa1345710 AT2G33480.3 42.342 111 54 3 67 177 8 108 8.69e-22 93.2
Msa1345710 AT2G18060.2 49.485 97 36 4 92 188 2 85 1.10e-21 94.4
Msa1345710 AT4G28530.2 38.889 126 61 2 16 125 12 137 3.23e-21 94.0
Msa1345710 AT1G02230.1 39.098 133 73 4 17 144 6 135 5.95e-21 93.6
Msa1345710 AT1G02250.1 41.406 128 67 4 17 139 6 130 1.24e-20 92.8
Msa1345710 AT3G04420.2 39.370 127 71 3 17 139 6 130 1.55e-20 91.3
Msa1345710 AT3G04420.1 39.370 127 71 3 17 139 6 130 6.73e-20 90.5
Msa1345710 AT1G01010.1 39.706 136 66 7 17 140 6 137 1.05e-17 84.7
Msa1345710 AT1G02220.1 39.370 127 68 4 17 139 6 127 9.11e-17 81.6
Msa1345710 AT5G14000.2 33.094 139 83 4 5 141 10 140 1.49e-15 73.9
Msa1345710 AT5G50820.1 35.878 131 72 5 16 143 19 140 2.08e-15 74.7
Msa1345710 AT5G14000.1 27.976 168 103 5 15 179 15 167 2.12e-15 75.1
Msa1345710 AT3G56530.1 32.283 127 81 3 16 139 54 178 3.68e-14 73.2
Msa1345710 AT3G10490.4 37.634 93 39 3 87 174 2 80 4.82e-13 70.1
Msa1345710 AT3G10490.3 37.634 93 39 3 87 174 2 80 4.82e-13 70.1
Msa1345710 AT3G04430.1 33.835 133 74 5 20 140 6 136 5.88e-13 67.8
Msa1345710 AT5G22290.2 39.560 91 36 4 93 180 2 76 1.30e-11 64.7

Find 81 sgRNAs with CRISPR-Local

Find 238 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACATGTTGTTTGAACAAAAT+TGG 0.184460 tig0007478:-36954 None:intergenic
AAGTTATCTTACCAGGATTT+AGG 0.220891 tig0007478:+35419 Msa1345710:CDS
GAAACAGTGCAAGGCCTAAT+AGG 0.247551 tig0007478:+36022 Msa1345710:CDS
TGAAACATCCATTGTAGATT+TGG 0.251668 tig0007478:-37196 None:intergenic
TTTGTTGAACCTTTCTCTTT+AGG 0.261897 tig0007478:-35477 None:intergenic
GGGTAACTGGAGCTGGATTC+TGG 0.266844 tig0007478:+36043 Msa1345710:CDS
CCAATGCATTATTATCATAT+TGG 0.276292 tig0007478:-37353 None:intergenic
GGACTAATAGTGGATTTATA+AGG 0.293506 tig0007478:-37057 None:intergenic
ACATTCACATTAACATTATA+AGG 0.303980 tig0007478:-37384 None:intergenic
ACTAAGATCTTCATTTGAAA+TGG 0.313776 tig0007478:-37109 None:intergenic
CATGGAAGTCAAATTTGCTT+TGG 0.326417 tig0007478:+37454 Msa1345710:CDS
GAATTGATGAATTTCAATAT+TGG 0.333275 tig0007478:+37426 Msa1345710:CDS
GCAAGGCCTAATAGGGTAAC+TGG 0.368447 tig0007478:+36030 Msa1345710:CDS
AAGAGCATTGTCACACTCTT+GGG 0.382245 tig0007478:+36873 Msa1345710:CDS
GAACCTTCTGAGGAGTAGAT+AGG 0.383654 tig0007478:-36087 None:intergenic
CAACTGATGAAGAGCTTGTT+GGG 0.385394 tig0007478:+35449 Msa1345710:CDS
TAACTAGAGGGAACATCAAT+AGG 0.388427 tig0007478:-37492 None:intergenic
AAAAGACTAAGGATTTCTTT+AGG 0.389485 tig0007478:-36122 None:intergenic
GACTAATAGTGGATTTATAA+GGG 0.390776 tig0007478:-37056 None:intergenic
ATGGAAGTCAAATTTGCTTT+GGG 0.392121 tig0007478:+37455 Msa1345710:CDS
CATGTTGTTTGAACAAAATT+GGG 0.393384 tig0007478:-36953 None:intergenic
CCAGCTCCAGTTACCCTATT+AGG 0.395888 tig0007478:-36036 None:intergenic
TCTTCCTTTGTAAAAGACTA+AGG 0.405196 tig0007478:-36133 None:intergenic
AAAGAGCATTGTCACACTCT+TGG 0.406423 tig0007478:+36872 Msa1345710:CDS
TGATAATAATGCATTGGTTA+AGG 0.409165 tig0007478:+37359 Msa1345710:CDS
TAGAGGTTCTTGTTTCAGAT+AGG 0.410820 tig0007478:-36903 None:intergenic
CCAACTGATGAAGAGCTTGT+TGG 0.413211 tig0007478:+35448 Msa1345710:CDS
CTAAGATCTTCATTTGAAAT+GGG 0.433260 tig0007478:-37108 None:intergenic
ACAACTACAAATTTCATGAA+TGG 0.443610 tig0007478:+37285 Msa1345710:CDS
AGTGACTACTCATTACCATT+TGG 0.444946 tig0007478:+37327 Msa1345710:CDS
AAGTACTTCTTTGGTGAAAG+TGG 0.447802 tig0007478:-36219 None:intergenic
CTTGATGAAGTTATCTTACC+AGG 0.449714 tig0007478:+35412 Msa1345710:CDS
AAACAGTGCAAGGCCTAATA+GGG 0.452535 tig0007478:+36023 Msa1345710:CDS
GCTGGATTCTGGAAAGCTAC+AGG 0.462218 tig0007478:+36054 Msa1345710:CDS
GTGTAGTAATGGACTAATAG+TGG 0.462562 tig0007478:-37067 None:intergenic
TTTCTTTAGGCCAATGCACT+TGG 0.465693 tig0007478:-36109 None:intergenic
CCTAATAGGGTAACTGGAGC+TGG 0.468839 tig0007478:+36036 Msa1345710:CDS
AGTGTAGAAGTGGTTGGTTA+AGG 0.469671 tig0007478:-36995 None:intergenic
ACTTTCACCAAAGAAGTACT+TGG 0.472752 tig0007478:+36221 Msa1345710:CDS
ACTGGATGATGCATGAGTTC+AGG 0.474694 tig0007478:+36178 Msa1345710:CDS
GTCTTACTTGGAAGATCCCA+TGG 0.475315 tig0007478:-35550 None:intergenic
TTATCATATTGGTTACCAAA+TGG 0.477245 tig0007478:-37342 None:intergenic
TAAAGTTTACTCACATTAGC+AGG 0.478939 tig0007478:-36255 None:intergenic
AGAGGTTCTTGTTTCAGATA+GGG 0.482157 tig0007478:-36902 None:intergenic
TACAAAGGAAGAGCTGCTAA+AGG 0.482478 tig0007478:+36144 Msa1345710:CDS
TGTGTAGAGTTTGCAAGTAC+AGG 0.488055 tig0007478:+35955 Msa1345710:intron
TTTACTCACATTAGCAGGAA+TGG 0.489171 tig0007478:-36250 None:intergenic
ATATTTATAAATATGATCCA+TGG 0.497907 tig0007478:+35533 Msa1345710:CDS
ACTACAAATTTCATGAATGG+TGG 0.505591 tig0007478:+37288 Msa1345710:CDS
GATATGGAAGAAAGAAATGA+TGG 0.515202 tig0007478:+35382 None:intergenic
GTTGGATGAAACCTAAATCC+TGG 0.518377 tig0007478:-35430 None:intergenic
CTACAAATTTCATGAATGGT+GGG 0.522679 tig0007478:+37289 Msa1345710:CDS
AATGCACTTGGAACCTTCTG+AGG 0.523326 tig0007478:-36097 None:intergenic
CTAAAGGAATCAAAACTGAC+TGG 0.527746 tig0007478:+36160 Msa1345710:CDS
GAAAGTGGATCTATGAGAGA+AGG 0.536482 tig0007478:-36204 None:intergenic
CCAATATGATAATAATGCAT+TGG 0.542771 tig0007478:+37353 Msa1345710:CDS
TGAAATGGGCAAGTGATGAA+AGG 0.548325 tig0007478:-37094 None:intergenic
TAACATCTACATCAAAGTCT+TGG 0.551480 tig0007478:-37032 None:intergenic
CATTGTTGTTAGTGTAGAAG+TGG 0.554564 tig0007478:-37005 None:intergenic
TCAGAAGGTTCCAAGTGCAT+TGG 0.555187 tig0007478:+36099 Msa1345710:CDS
GTTAAAGTCACCAAGCATTG+AGG 0.557277 tig0007478:-37244 None:intergenic
CCAACAAGCTCTTCATCAGT+TGG 0.559889 tig0007478:-35448 None:intergenic
TATTTATAAATATGATCCAT+GGG 0.566821 tig0007478:+35534 Msa1345710:CDS
TGAAAGGCTTTGTGTAGTAA+TGG 0.568461 tig0007478:-37078 None:intergenic
GTTGTTAGTGTAGAAGTGGT+TGG 0.570750 tig0007478:-37001 None:intergenic
TTAGTGTTAGATGTTTCAAG+TGG 0.573001 tig0007478:-37159 None:intergenic
ATGTCATCATCCTCAATGCT+TGG 0.574915 tig0007478:+37234 Msa1345710:CDS
CAAGTACAGGAGAGAAAGAG+TGG 0.578025 tig0007478:+35968 Msa1345710:CDS
TATTATTTCCAAATCTACAA+TGG 0.582705 tig0007478:+37188 Msa1345710:CDS
ATTTCAATATTGGTGATGCA+TGG 0.583124 tig0007478:+37436 Msa1345710:CDS
AAACCTATCTACTCCTCAGA+AGG 0.590506 tig0007478:+36084 Msa1345710:CDS
CTGGATTCTGGAAAGCTACA+GGG 0.596618 tig0007478:+36055 Msa1345710:CDS
CTTGGTTGTTGAATAACTAG+AGG 0.600536 tig0007478:-37505 None:intergenic
ACTAATAGTGGATTTATAAG+GGG 0.623822 tig0007478:-37055 None:intergenic
TACAAATTAAGTGTAACACT+TGG 0.625059 tig0007478:-37523 None:intergenic
TTGGTTGTTGAATAACTAGA+GGG 0.629756 tig0007478:-37504 None:intergenic
GAAAATACAGAAACAGTGCA+AGG 0.653407 tig0007478:+36013 Msa1345710:CDS
TAAAGAGAAAGGTTCAACAA+AGG 0.656075 tig0007478:+35479 Msa1345710:CDS
CTTTAACAAGACATGTGATG+AGG 0.658516 tig0007478:+37260 Msa1345710:CDS
AATTCTTGTTCATCAATACG+AGG 0.699073 tig0007478:-37408 None:intergenic
TTGATGAGCTCAATAGACAG+AGG 0.712731 tig0007478:-35502 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTTATATATAAGTATTTATA+TGG - tig0007478:35649-35668 None:intergenic 10.0%
!! CTTATATATAAGTATTTATA+TGG - tig0007478:35649-35668 None:intergenic 10.0%
!! ATATTTATAAATATGATCCA+TGG + tig0007478:35533-35552 Msa1345710:CDS 15.0%
!! TATTTATAAATATGATCCAT+GGG + tig0007478:35534-35553 Msa1345710:CDS 15.0%
!! AAAATATACTTAGAATTAGA+GGG - tig0007478:36399-36418 None:intergenic 15.0%
!! AAAAATATACTTAGAATTAG+AGG - tig0007478:36400-36419 None:intergenic 15.0%
!!! GACAAATATTTTAAATGAAA+TGG + tig0007478:36529-36548 Msa1345710:intron 15.0%
!!! AACATTTTTAATGATTTTAG+CGG + tig0007478:36651-36670 Msa1345710:intron 15.0%
!! AAATATCATTTATGGAATTA+TGG + tig0007478:36771-36790 Msa1345710:intron 15.0%
!! ATATTTATAAATATGATCCA+TGG + tig0007478:35533-35552 Msa1345710:CDS 15.0%
!! TATTTATAAATATGATCCAT+GGG + tig0007478:35534-35553 Msa1345710:CDS 15.0%
!! AAAATATACTTAGAATTAGA+GGG - tig0007478:36399-36418 None:intergenic 15.0%
!! AAAAATATACTTAGAATTAG+AGG - tig0007478:36400-36419 None:intergenic 15.0%
!!! GACAAATATTTTAAATGAAA+TGG + tig0007478:36529-36548 Msa1345710:intron 15.0%
!!! AACATTTTTAATGATTTTAG+CGG + tig0007478:36651-36670 Msa1345710:intron 15.0%
!! AAATATCATTTATGGAATTA+TGG + tig0007478:36771-36790 Msa1345710:intron 15.0%
!!! AAGAAGATTGATAATAGTTA+AGG + tig0007478:35718-35737 Msa1345710:intron 20.0%
!! GTGTTTGTAAATATCATTTA+TGG + tig0007478:36763-36782 Msa1345710:intron 20.0%
!! TATTATTTCCAAATCTACAA+TGG + tig0007478:37188-37207 Msa1345710:CDS 20.0%
!! ACATTCACATTAACATTATA+AGG - tig0007478:37387-37406 None:intergenic 20.0%
!! GAATTGATGAATTTCAATAT+TGG + tig0007478:37426-37445 Msa1345710:CDS 20.0%
!!! AAGAAGATTGATAATAGTTA+AGG + tig0007478:35718-35737 Msa1345710:intron 20.0%
!! GTGTTTGTAAATATCATTTA+TGG + tig0007478:36763-36782 Msa1345710:intron 20.0%
!! TATTATTTCCAAATCTACAA+TGG + tig0007478:37188-37207 Msa1345710:CDS 20.0%
!! ACATTCACATTAACATTATA+AGG - tig0007478:37387-37406 None:intergenic 20.0%
!! GAATTGATGAATTTCAATAT+TGG + tig0007478:37426-37445 Msa1345710:CDS 20.0%
! AGACACTTAAATATCTTTGT+TGG + tig0007478:35574-35593 Msa1345710:intron 25.0%
! TGCTATAAGCACTTAATTAA+GGG - tig0007478:35616-35635 None:intergenic 25.0%
! ATGCTATAAGCACTTAATTA+AGG - tig0007478:35617-35636 None:intergenic 25.0%
! TTCTATTACAAAAGTCAAAC+TGG + tig0007478:35673-35692 Msa1345710:intron 25.0%
!!! GTTGTTTTCATAAGTTATTC+TGG + tig0007478:35818-35837 Msa1345710:intron 25.0%
! AAAAGACTAAGGATTTCTTT+AGG - tig0007478:36125-36144 None:intergenic 25.0%
!!! AAATCCTTAGTCTTTTACAA+AGG + tig0007478:36129-36148 Msa1345710:CDS 25.0%
!!! ATTTTTGGTTAGCATATTAG+AGG - tig0007478:36923-36942 None:intergenic 25.0%
!! CATGTTGTTTGAACAAAATT+GGG - tig0007478:36956-36975 None:intergenic 25.0%
!! ACATGTTGTTTGAACAAAAT+TGG - tig0007478:36957-36976 None:intergenic 25.0%
!!! ACTAATAGTGGATTTATAAG+GGG - tig0007478:37058-37077 None:intergenic 25.0%
!!! GACTAATAGTGGATTTATAA+GGG - tig0007478:37059-37078 None:intergenic 25.0%
!! CTAAGATCTTCATTTGAAAT+GGG - tig0007478:37111-37130 None:intergenic 25.0%
! ACTAAGATCTTCATTTGAAA+TGG - tig0007478:37112-37131 None:intergenic 25.0%
! ACAACTACAAATTTCATGAA+TGG + tig0007478:37285-37304 Msa1345710:CDS 25.0%
!! TTATCATATTGGTTACCAAA+TGG - tig0007478:37345-37364 None:intergenic 25.0%
! CCAATGCATTATTATCATAT+TGG - tig0007478:37356-37375 None:intergenic 25.0%
! CCAATATGATAATAATGCAT+TGG + tig0007478:37353-37372 Msa1345710:CDS 25.0%
!!! TGATAATAATGCATTGGTTA+AGG + tig0007478:37359-37378 Msa1345710:CDS 25.0%
! AGACACTTAAATATCTTTGT+TGG + tig0007478:35574-35593 Msa1345710:intron 25.0%
! TGCTATAAGCACTTAATTAA+GGG - tig0007478:35616-35635 None:intergenic 25.0%
! ATGCTATAAGCACTTAATTA+AGG - tig0007478:35617-35636 None:intergenic 25.0%
! TTCTATTACAAAAGTCAAAC+TGG + tig0007478:35673-35692 Msa1345710:intron 25.0%
!!! GTTGTTTTCATAAGTTATTC+TGG + tig0007478:35818-35837 Msa1345710:intron 25.0%
! AAAAGACTAAGGATTTCTTT+AGG - tig0007478:36125-36144 None:intergenic 25.0%
!!! AAATCCTTAGTCTTTTACAA+AGG + tig0007478:36129-36148 Msa1345710:CDS 25.0%
!!! ATTTTTGGTTAGCATATTAG+AGG - tig0007478:36923-36942 None:intergenic 25.0%
!! CATGTTGTTTGAACAAAATT+GGG - tig0007478:36956-36975 None:intergenic 25.0%
!! ACATGTTGTTTGAACAAAAT+TGG - tig0007478:36957-36976 None:intergenic 25.0%
!!! ACTAATAGTGGATTTATAAG+GGG - tig0007478:37058-37077 None:intergenic 25.0%
!!! GACTAATAGTGGATTTATAA+GGG - tig0007478:37059-37078 None:intergenic 25.0%
!! CTAAGATCTTCATTTGAAAT+GGG - tig0007478:37111-37130 None:intergenic 25.0%
! ACTAAGATCTTCATTTGAAA+TGG - tig0007478:37112-37131 None:intergenic 25.0%
! ACAACTACAAATTTCATGAA+TGG + tig0007478:37285-37304 Msa1345710:CDS 25.0%
!! TTATCATATTGGTTACCAAA+TGG - tig0007478:37345-37364 None:intergenic 25.0%
! CCAATGCATTATTATCATAT+TGG - tig0007478:37356-37375 None:intergenic 25.0%
! CCAATATGATAATAATGCAT+TGG + tig0007478:37353-37372 Msa1345710:CDS 25.0%
!!! TGATAATAATGCATTGGTTA+AGG + tig0007478:37359-37378 Msa1345710:CDS 25.0%
AAGTTATCTTACCAGGATTT+AGG + tig0007478:35419-35438 Msa1345710:CDS 30.0%
TTTGTTGAACCTTTCTCTTT+AGG - tig0007478:35480-35499 None:intergenic 30.0%
TAAAGAGAAAGGTTCAACAA+AGG + tig0007478:35479-35498 Msa1345710:CDS 30.0%
TTTAAGTGTCTTGTCTTACT+TGG - tig0007478:35565-35584 None:intergenic 30.0%
TTAGCATAGTTTATGGAAAG+TGG - tig0007478:35896-35915 None:intergenic 30.0%
ACACTGTTTAGCATAGTTTA+TGG - tig0007478:35903-35922 None:intergenic 30.0%
! TTTCTGTATTTTCTGTCTCT+TGG - tig0007478:36006-36025 None:intergenic 30.0%
TCTTCCTTTGTAAAAGACTA+AGG - tig0007478:36136-36155 None:intergenic 30.0%
TAAAGTTTACTCACATTAGC+AGG - tig0007478:36258-36277 None:intergenic 30.0%
CATTACGATCCTTGATATTA+TGG + tig0007478:36321-36340 Msa1345710:intron 30.0%
CATTGTCAACATATCATAGT+TGG + tig0007478:36589-36608 Msa1345710:intron 30.0%
!! TAACTTGTCTTTTAACATGC+AGG + tig0007478:36801-36820 Msa1345710:intron 30.0%
! TTTTAACATGCAGGAATCAT+GGG + tig0007478:36810-36829 Msa1345710:intron 30.0%
! TTGGGTGATTTCTTGATTTT+TGG - tig0007478:36938-36957 None:intergenic 30.0%
TAACATCTACATCAAAGTCT+TGG - tig0007478:37035-37054 None:intergenic 30.0%
!! GGACTAATAGTGGATTTATA+AGG - tig0007478:37060-37079 None:intergenic 30.0%
TTAGTGTTAGATGTTTCAAG+TGG - tig0007478:37162-37181 None:intergenic 30.0%
TGAAACATCCATTGTAGATT+TGG - tig0007478:37199-37218 None:intergenic 30.0%
ACTACAAATTTCATGAATGG+TGG + tig0007478:37288-37307 Msa1345710:CDS 30.0%
CTACAAATTTCATGAATGGT+GGG + tig0007478:37289-37308 Msa1345710:CDS 30.0%
AATTCTTGTTCATCAATACG+AGG - tig0007478:37411-37430 None:intergenic 30.0%
!! ATTTCAATATTGGTGATGCA+TGG + tig0007478:37436-37455 Msa1345710:CDS 30.0%
! ATGGAAGTCAAATTTGCTTT+GGG + tig0007478:37455-37474 Msa1345710:CDS 30.0%
TTGGTTGTTGAATAACTAGA+GGG - tig0007478:37507-37526 None:intergenic 30.0%
AAGTTATCTTACCAGGATTT+AGG + tig0007478:35419-35438 Msa1345710:CDS 30.0%
TTTGTTGAACCTTTCTCTTT+AGG - tig0007478:35480-35499 None:intergenic 30.0%
TAAAGAGAAAGGTTCAACAA+AGG + tig0007478:35479-35498 Msa1345710:CDS 30.0%
TTTAAGTGTCTTGTCTTACT+TGG - tig0007478:35565-35584 None:intergenic 30.0%
TTAGCATAGTTTATGGAAAG+TGG - tig0007478:35896-35915 None:intergenic 30.0%
ACACTGTTTAGCATAGTTTA+TGG - tig0007478:35903-35922 None:intergenic 30.0%
! TTTCTGTATTTTCTGTCTCT+TGG - tig0007478:36006-36025 None:intergenic 30.0%
TCTTCCTTTGTAAAAGACTA+AGG - tig0007478:36136-36155 None:intergenic 30.0%
TAAAGTTTACTCACATTAGC+AGG - tig0007478:36258-36277 None:intergenic 30.0%
CATTACGATCCTTGATATTA+TGG + tig0007478:36321-36340 Msa1345710:intron 30.0%
CATTGTCAACATATCATAGT+TGG + tig0007478:36589-36608 Msa1345710:intron 30.0%
!! TAACTTGTCTTTTAACATGC+AGG + tig0007478:36801-36820 Msa1345710:intron 30.0%
! TTTTAACATGCAGGAATCAT+GGG + tig0007478:36810-36829 Msa1345710:intron 30.0%
! TTGGGTGATTTCTTGATTTT+TGG - tig0007478:36938-36957 None:intergenic 30.0%
TAACATCTACATCAAAGTCT+TGG - tig0007478:37035-37054 None:intergenic 30.0%
!! GGACTAATAGTGGATTTATA+AGG - tig0007478:37060-37079 None:intergenic 30.0%
TTAGTGTTAGATGTTTCAAG+TGG - tig0007478:37162-37181 None:intergenic 30.0%
TGAAACATCCATTGTAGATT+TGG - tig0007478:37199-37218 None:intergenic 30.0%
ACTACAAATTTCATGAATGG+TGG + tig0007478:37288-37307 Msa1345710:CDS 30.0%
CTACAAATTTCATGAATGGT+GGG + tig0007478:37289-37308 Msa1345710:CDS 30.0%
AATTCTTGTTCATCAATACG+AGG - tig0007478:37411-37430 None:intergenic 30.0%
!! ATTTCAATATTGGTGATGCA+TGG + tig0007478:37436-37455 Msa1345710:CDS 30.0%
! ATGGAAGTCAAATTTGCTTT+GGG + tig0007478:37455-37474 Msa1345710:CDS 30.0%
TTGGTTGTTGAATAACTAGA+GGG - tig0007478:37507-37526 None:intergenic 30.0%
CTTGATGAAGTTATCTTACC+AGG + tig0007478:35412-35431 Msa1345710:CDS 35.0%
! TGGGTTTTACCTAAAGAGAA+AGG + tig0007478:35468-35487 Msa1345710:CDS 35.0%
!! AAGTCAAACTGGTTCGATAT+AGG + tig0007478:35684-35703 Msa1345710:intron 35.0%
GAAAATACAGAAACAGTGCA+AGG + tig0007478:36013-36032 Msa1345710:CDS 35.0%
CTAAAGGAATCAAAACTGAC+TGG + tig0007478:36160-36179 Msa1345710:CDS 35.0%
AAGTACTTCTTTGGTGAAAG+TGG - tig0007478:36222-36241 None:intergenic 35.0%
!! ACTTTCACCAAAGAAGTACT+TGG + tig0007478:36221-36240 Msa1345710:CDS 35.0%
! GTTTTCTCCAAGTACTTCTT+TGG - tig0007478:36231-36250 None:intergenic 35.0%
TTTACTCACATTAGCAGGAA+TGG - tig0007478:36253-36272 None:intergenic 35.0%
TGCGATTCTCCATAATATCA+AGG - tig0007478:36333-36352 None:intergenic 35.0%
ATGAAATGGTTGCAATGAGA+TGG + tig0007478:36543-36562 Msa1345710:intron 35.0%
! CTTTTAACATGCAGGAATCA+TGG + tig0007478:36809-36828 Msa1345710:intron 35.0%
! AGAGGTTCTTGTTTCAGATA+GGG - tig0007478:36905-36924 None:intergenic 35.0%
! TAGAGGTTCTTGTTTCAGAT+AGG - tig0007478:36906-36925 None:intergenic 35.0%
! CATTGTTGTTAGTGTAGAAG+TGG - tig0007478:37008-37027 None:intergenic 35.0%
!! GTGTAGTAATGGACTAATAG+TGG - tig0007478:37070-37089 None:intergenic 35.0%
! TGAAAGGCTTTGTGTAGTAA+TGG - tig0007478:37081-37100 None:intergenic 35.0%
CTTTAACAAGACATGTGATG+AGG + tig0007478:37260-37279 Msa1345710:CDS 35.0%
AGTGACTACTCATTACCATT+TGG + tig0007478:37327-37346 Msa1345710:CDS 35.0%
! CATGGAAGTCAAATTTGCTT+TGG + tig0007478:37454-37473 Msa1345710:CDS 35.0%
TAACTAGAGGGAACATCAAT+AGG - tig0007478:37495-37514 None:intergenic 35.0%
CTTGGTTGTTGAATAACTAG+AGG - tig0007478:37508-37527 None:intergenic 35.0%
CTTGATGAAGTTATCTTACC+AGG + tig0007478:35412-35431 Msa1345710:CDS 35.0%
! TGGGTTTTACCTAAAGAGAA+AGG + tig0007478:35468-35487 Msa1345710:CDS 35.0%
!! AAGTCAAACTGGTTCGATAT+AGG + tig0007478:35684-35703 Msa1345710:intron 35.0%
GAAAATACAGAAACAGTGCA+AGG + tig0007478:36013-36032 Msa1345710:CDS 35.0%
CTAAAGGAATCAAAACTGAC+TGG + tig0007478:36160-36179 Msa1345710:CDS 35.0%
AAGTACTTCTTTGGTGAAAG+TGG - tig0007478:36222-36241 None:intergenic 35.0%
!! ACTTTCACCAAAGAAGTACT+TGG + tig0007478:36221-36240 Msa1345710:CDS 35.0%
! GTTTTCTCCAAGTACTTCTT+TGG - tig0007478:36231-36250 None:intergenic 35.0%
TTTACTCACATTAGCAGGAA+TGG - tig0007478:36253-36272 None:intergenic 35.0%
TGCGATTCTCCATAATATCA+AGG - tig0007478:36333-36352 None:intergenic 35.0%
ATGAAATGGTTGCAATGAGA+TGG + tig0007478:36543-36562 Msa1345710:intron 35.0%
! CTTTTAACATGCAGGAATCA+TGG + tig0007478:36809-36828 Msa1345710:intron 35.0%
! AGAGGTTCTTGTTTCAGATA+GGG - tig0007478:36905-36924 None:intergenic 35.0%
! TAGAGGTTCTTGTTTCAGAT+AGG - tig0007478:36906-36925 None:intergenic 35.0%
! CATTGTTGTTAGTGTAGAAG+TGG - tig0007478:37008-37027 None:intergenic 35.0%
!! GTGTAGTAATGGACTAATAG+TGG - tig0007478:37070-37089 None:intergenic 35.0%
! TGAAAGGCTTTGTGTAGTAA+TGG - tig0007478:37081-37100 None:intergenic 35.0%
CTTTAACAAGACATGTGATG+AGG + tig0007478:37260-37279 Msa1345710:CDS 35.0%
AGTGACTACTCATTACCATT+TGG + tig0007478:37327-37346 Msa1345710:CDS 35.0%
! CATGGAAGTCAAATTTGCTT+TGG + tig0007478:37454-37473 Msa1345710:CDS 35.0%
TAACTAGAGGGAACATCAAT+AGG - tig0007478:37495-37514 None:intergenic 35.0%
CTTGGTTGTTGAATAACTAG+AGG - tig0007478:37508-37527 None:intergenic 35.0%
GTTGGATGAAACCTAAATCC+TGG - tig0007478:35433-35452 None:intergenic 40.0%
! CAACTGATGAAGAGCTTGTT+GGG + tig0007478:35449-35468 Msa1345710:CDS 40.0%
TTGATGAGCTCAATAGACAG+AGG - tig0007478:35505-35524 None:intergenic 40.0%
! AGTTAAGGTGCTAACCTAGT+TGG + tig0007478:35733-35752 Msa1345710:intron 40.0%
! GTTAAGGTGCTAACCTAGTT+GGG + tig0007478:35734-35753 Msa1345710:intron 40.0%
TGTGTAGAGTTTGCAAGTAC+AGG + tig0007478:35955-35974 Msa1345710:intron 40.0%
AAACAGTGCAAGGCCTAATA+GGG + tig0007478:36023-36042 Msa1345710:CDS 40.0%
AAACCTATCTACTCCTCAGA+AGG + tig0007478:36084-36103 Msa1345710:CDS 40.0%
TTTCTTTAGGCCAATGCACT+TGG - tig0007478:36112-36131 None:intergenic 40.0%
TACAAAGGAAGAGCTGCTAA+AGG + tig0007478:36144-36163 Msa1345710:CDS 40.0%
GAAAGTGGATCTATGAGAGA+AGG - tig0007478:36207-36226 None:intergenic 40.0%
AAATGGTTGCAATGAGATGG+AGG + tig0007478:36546-36565 Msa1345710:intron 40.0%
AATGGTTGCAATGAGATGGA+GGG + tig0007478:36547-36566 Msa1345710:intron 40.0%
GACCGATACAACATTCTGTA+CGG + tig0007478:36686-36705 Msa1345710:intron 40.0%
CACCGTACAGAATGTTGTAT+CGG - tig0007478:36691-36710 None:intergenic 40.0%
!! AAAGAGCATTGTCACACTCT+TGG + tig0007478:36872-36891 Msa1345710:CDS 40.0%
!! AAGAGCATTGTCACACTCTT+GGG + tig0007478:36873-36892 Msa1345710:CDS 40.0%
! AGTGTAGAAGTGGTTGGTTA+AGG - tig0007478:36998-37017 None:intergenic 40.0%
GTTGTTAGTGTAGAAGTGGT+TGG - tig0007478:37004-37023 None:intergenic 40.0%
TGAAATGGGCAAGTGATGAA+AGG - tig0007478:37097-37116 None:intergenic 40.0%
ATGTCATCATCCTCAATGCT+TGG + tig0007478:37234-37253 Msa1345710:CDS 40.0%
! GTTAAAGTCACCAAGCATTG+AGG - tig0007478:37247-37266 None:intergenic 40.0%
GTTGGATGAAACCTAAATCC+TGG - tig0007478:35433-35452 None:intergenic 40.0%
! CAACTGATGAAGAGCTTGTT+GGG + tig0007478:35449-35468 Msa1345710:CDS 40.0%
TTGATGAGCTCAATAGACAG+AGG - tig0007478:35505-35524 None:intergenic 40.0%
! AGTTAAGGTGCTAACCTAGT+TGG + tig0007478:35733-35752 Msa1345710:intron 40.0%
! GTTAAGGTGCTAACCTAGTT+GGG + tig0007478:35734-35753 Msa1345710:intron 40.0%
TGTGTAGAGTTTGCAAGTAC+AGG + tig0007478:35955-35974 Msa1345710:intron 40.0%
AAACAGTGCAAGGCCTAATA+GGG + tig0007478:36023-36042 Msa1345710:CDS 40.0%
AAACCTATCTACTCCTCAGA+AGG + tig0007478:36084-36103 Msa1345710:CDS 40.0%
TTTCTTTAGGCCAATGCACT+TGG - tig0007478:36112-36131 None:intergenic 40.0%
TACAAAGGAAGAGCTGCTAA+AGG + tig0007478:36144-36163 Msa1345710:CDS 40.0%
GAAAGTGGATCTATGAGAGA+AGG - tig0007478:36207-36226 None:intergenic 40.0%
AAATGGTTGCAATGAGATGG+AGG + tig0007478:36546-36565 Msa1345710:intron 40.0%
AATGGTTGCAATGAGATGGA+GGG + tig0007478:36547-36566 Msa1345710:intron 40.0%
GACCGATACAACATTCTGTA+CGG + tig0007478:36686-36705 Msa1345710:intron 40.0%
CACCGTACAGAATGTTGTAT+CGG - tig0007478:36691-36710 None:intergenic 40.0%
!! AAAGAGCATTGTCACACTCT+TGG + tig0007478:36872-36891 Msa1345710:CDS 40.0%
!! AAGAGCATTGTCACACTCTT+GGG + tig0007478:36873-36892 Msa1345710:CDS 40.0%
! AGTGTAGAAGTGGTTGGTTA+AGG - tig0007478:36998-37017 None:intergenic 40.0%
GTTGTTAGTGTAGAAGTGGT+TGG - tig0007478:37004-37023 None:intergenic 40.0%
TGAAATGGGCAAGTGATGAA+AGG - tig0007478:37097-37116 None:intergenic 40.0%
ATGTCATCATCCTCAATGCT+TGG + tig0007478:37234-37253 Msa1345710:CDS 40.0%
! GTTAAAGTCACCAAGCATTG+AGG - tig0007478:37247-37266 None:intergenic 40.0%
CCAACAAGCTCTTCATCAGT+TGG - tig0007478:35451-35470 None:intergenic 45.0%
CCAACTGATGAAGAGCTTGT+TGG + tig0007478:35448-35467 Msa1345710:CDS 45.0%
GTCTTACTTGGAAGATCCCA+TGG - tig0007478:35553-35572 None:intergenic 45.0%
CAAGTACAGGAGAGAAAGAG+TGG + tig0007478:35968-35987 Msa1345710:CDS 45.0%
GAAACAGTGCAAGGCCTAAT+AGG + tig0007478:36022-36041 Msa1345710:CDS 45.0%
! CTGGATTCTGGAAAGCTACA+GGG + tig0007478:36055-36074 Msa1345710:CDS 45.0%
! GAACCTTCTGAGGAGTAGAT+AGG - tig0007478:36090-36109 None:intergenic 45.0%
AATGCACTTGGAACCTTCTG+AGG - tig0007478:36100-36119 None:intergenic 45.0%
TCAGAAGGTTCCAAGTGCAT+TGG + tig0007478:36099-36118 Msa1345710:CDS 45.0%
ACTGGATGATGCATGAGTTC+AGG + tig0007478:36178-36197 Msa1345710:CDS 45.0%
AACTCGTGCGATGTCAACAT+AGG + tig0007478:36362-36381 Msa1345710:intron 45.0%
CCAACAAGCTCTTCATCAGT+TGG - tig0007478:35451-35470 None:intergenic 45.0%
CCAACTGATGAAGAGCTTGT+TGG + tig0007478:35448-35467 Msa1345710:CDS 45.0%
GTCTTACTTGGAAGATCCCA+TGG - tig0007478:35553-35572 None:intergenic 45.0%
CAAGTACAGGAGAGAAAGAG+TGG + tig0007478:35968-35987 Msa1345710:CDS 45.0%
GAAACAGTGCAAGGCCTAAT+AGG + tig0007478:36022-36041 Msa1345710:CDS 45.0%
! CTGGATTCTGGAAAGCTACA+GGG + tig0007478:36055-36074 Msa1345710:CDS 45.0%
! GAACCTTCTGAGGAGTAGAT+AGG - tig0007478:36090-36109 None:intergenic 45.0%
AATGCACTTGGAACCTTCTG+AGG - tig0007478:36100-36119 None:intergenic 45.0%
TCAGAAGGTTCCAAGTGCAT+TGG + tig0007478:36099-36118 Msa1345710:CDS 45.0%
ACTGGATGATGCATGAGTTC+AGG + tig0007478:36178-36197 Msa1345710:CDS 45.0%
AACTCGTGCGATGTCAACAT+AGG + tig0007478:36362-36381 Msa1345710:intron 45.0%
!!! ATTATTAATATAGATATTTT+AGG - tig0007478:36470-36489 None:intergenic 5.0%
!!! TTTTTTTTTTTAAAAAACTT+AGG + tig0007478:36728-36747 Msa1345710:intron 5.0%
!!! ATTATTAATATAGATATTTT+AGG - tig0007478:36470-36489 None:intergenic 5.0%
!!! TTTTTTTTTTTAAAAAACTT+AGG + tig0007478:36728-36747 Msa1345710:intron 5.0%
AACGTGCGAACATCCCAACT+AGG - tig0007478:35750-35769 None:intergenic 50.0%
GCAAGGCCTAATAGGGTAAC+TGG + tig0007478:36030-36049 Msa1345710:CDS 50.0%
CCAGCTCCAGTTACCCTATT+AGG - tig0007478:36039-36058 None:intergenic 50.0%
CCTAATAGGGTAACTGGAGC+TGG + tig0007478:36036-36055 Msa1345710:CDS 50.0%
! GCTGGATTCTGGAAAGCTAC+AGG + tig0007478:36054-36073 Msa1345710:CDS 50.0%
AACGTGCGAACATCCCAACT+AGG - tig0007478:35750-35769 None:intergenic 50.0%
GCAAGGCCTAATAGGGTAAC+TGG + tig0007478:36030-36049 Msa1345710:CDS 50.0%
CCAGCTCCAGTTACCCTATT+AGG - tig0007478:36039-36058 None:intergenic 50.0%
CCTAATAGGGTAACTGGAGC+TGG + tig0007478:36036-36055 Msa1345710:CDS 50.0%
! GCTGGATTCTGGAAAGCTAC+AGG + tig0007478:36054-36073 Msa1345710:CDS 50.0%
GGGTAACTGGAGCTGGATTC+TGG + tig0007478:36043-36062 Msa1345710:CDS 55.0%
GGGTAACTGGAGCTGGATTC+TGG + tig0007478:36043-36062 Msa1345710:CDS 55.0%
Chromosome Type Strat End Strand Name
tig0007478 gene 35385 37539 35385 ID=Msa1345710;Name=Msa1345710
tig0007478 mRNA 35385 37539 35385 ID=Msa1345710-mRNA-1;Parent=Msa1345710;Name=Msa1345710-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|1|1|1|3|0|399
tig0007478 exon 35385 35565 35385 ID=Msa1345710-mRNA-1:exon:5135;Parent=Msa1345710-mRNA-1
tig0007478 exon 35962 36263 35962 ID=Msa1345710-mRNA-1:exon:5136;Parent=Msa1345710-mRNA-1
tig0007478 exon 36823 37539 36823 ID=Msa1345710-mRNA-1:exon:5137;Parent=Msa1345710-mRNA-1
tig0007478 CDS 35385 35565 35385 ID=Msa1345710-mRNA-1:cds;Parent=Msa1345710-mRNA-1
tig0007478 CDS 35962 36263 35962 ID=Msa1345710-mRNA-1:cds;Parent=Msa1345710-mRNA-1
tig0007478 CDS 36823 37539 36823 ID=Msa1345710-mRNA-1:cds;Parent=Msa1345710-mRNA-1
Gene Sequence

>Msa1345710

ATGGAAGAAAGAAATGATGGTGAAAAACTTGATGAAGTTATCTTACCAGGATTTAGGTTTCATCCAACTGATGAAGAGCTTGTTGGGTTTTACCTAAAGAGAAAGGTTCAACAAAGGCCTCTGTCTATTGAGCTCATCAAGCAGCTTGATATTTATAAATATGATCCATGGGATCTTCCAAAGTTTGCAAGTACAGGAGAGAAAGAGTGGTATTTCTACTGTCCAAGAGACAGAAAATACAGAAACAGTGCAAGGCCTAATAGGGTAACTGGAGCTGGATTCTGGAAAGCTACAGGGACAGATAAACCTATCTACTCCTCAGAAGGTTCCAAGTGCATTGGCCTAAAGAAATCCTTAGTCTTTTACAAAGGAAGAGCTGCTAAAGGAATCAAAACTGACTGGATGATGCATGAGTTCAGGCTACCTTCTCTCATAGATCCACTTTCACCAAAGAAGTACTTGGAGAAAACCATTCCTGCTAATGAATCATGGGCTATCTGTAGAATATTCAAGAAAACAAATTCTACAGCTCAAAGAGCATTGTCACACTCTTGGGTTTCTTCCCTATCTGAAACAAGAACCTCTAATATGCTAACCAAAAATCAAGAAATCACCCAATTTTGTTCAAACAACATGTCATTGACAAAGAGTACATCCTTAACCAACCACTTCTACACTAACAACAATGATAACCAAGACTTTGATGTAGATGTTACCCCTTATAAATCCACTATTAGTCCATTACTACACAAAGCCTTTCATCACTTGCCCATTTCAAATGAAGATCTTAGTACTAACTTGATATTCTCATCATCATCTCCACTTGAAACATCTAACACTAATAGTGATATTATTTCCAAATCTACAATGGATGTTTCATCAATGTTGTTGAATATGTCATCATCCTCAATGCTTGGTGACTTTAACAAGACATGTGATGAGGTTACAACTACAAATTTCATGAATGGTGGGTTGCAAGAGCAATTTAGTGACTACTCATTACCATTTGGTAACCAATATGATAATAATGCATTGGTTAAGGTACCTTATAATGTTAATGTGAATGTGCCTCGTATTGATGAACAAGAATTGATGAATTTCAATATTGGTGATGCATGGAAGTCAAATTTGCTTTGGGATACTTCATTTTGTCCTATTGATGTTCCCTCTAGTTATTCAACAACCAAGTGTTACACTTAA
Protein sequence

>Msa1345710

MEERNDGEKLDEVILPGFRFHPTDEELVGFYLKRKVQQRPLSIELIKQLDIYKYDPWDLPKFASTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDKPIYSSEGSKCIGLKKSLVFYKGRAAKGIKTDWMMHEFRLPSLIDPLSPKKYLEKTIPANESWAICRIFKKTNSTAQRALSHSWVSSLSETRTSNMLTKNQEITQFCSNNMSLTKSTSLTNHFYTNNNDNQDFDVDVTPYKSTISPLLHKAFHHLPISNEDLSTNLIFSSSSPLETSNTNSDIISKSTMDVSSMLLNMSSSSMLGDFNKTCDEVTTTNFMNGGLQEQFSDYSLPFGNQYDNNALVKVPYNVNVNVPRIDEQELMNFNIGDAWKSNLLWDTSFCPIDVPSSYSTTKCYT*