Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1346020 | XP_024633944.2 | 96.467 | 368 | 11 | 1 | 1 | 366 | 1 | 368 | 0.0 | 733 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1346020 | sp|Q9FV70|E2FC_ARATH | 51.505 | 299 | 113 | 8 | 70 | 366 | 123 | 391 | 3.46e-88 | 274 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1346020 | A0A396J346 | 96.467 | 368 | 11 | 1 | 1 | 366 | 1 | 368 | 0.0 | 733 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1346020 | TF | E2F-DP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1346020 | MtrunA17_Chr3g0142581 | 96.467 | 368 | 11 | 1 | 1 | 366 | 1 | 368 | 0.0 | 733 |
| Msa1346020 | MtrunA17_Chr1g0177351 | 46.970 | 330 | 157 | 6 | 53 | 366 | 92 | 419 | 1.38e-85 | 266 |
| Msa1346020 | MtrunA17_Chr4g0025881 | 45.397 | 315 | 155 | 4 | 69 | 366 | 100 | 414 | 3.48e-84 | 263 |
| Msa1346020 | MtrunA17_Chr4g0059551 | 46.377 | 69 | 37 | 0 | 97 | 165 | 14 | 82 | 1.08e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1346020 | AT1G47870.2 | 51.505 | 299 | 113 | 8 | 70 | 366 | 122 | 390 | 2.58e-89 | 274 |
| Msa1346020 | AT1G47870.1 | 51.505 | 299 | 113 | 8 | 70 | 366 | 123 | 391 | 3.52e-89 | 274 |
| Msa1346020 | AT5G22220.3 | 44.242 | 330 | 150 | 6 | 69 | 366 | 92 | 419 | 1.66e-79 | 251 |
| Msa1346020 | AT5G22220.2 | 44.242 | 330 | 150 | 6 | 69 | 366 | 92 | 419 | 1.82e-79 | 251 |
| Msa1346020 | AT2G36010.1 | 41.716 | 338 | 175 | 6 | 50 | 366 | 112 | 448 | 1.78e-74 | 239 |
| Msa1346020 | AT2G36010.3 | 41.593 | 339 | 176 | 6 | 50 | 366 | 112 | 450 | 1.94e-73 | 236 |
| Msa1346020 | AT2G36010.2 | 38.507 | 335 | 171 | 8 | 50 | 366 | 162 | 479 | 3.17e-60 | 202 |
| Msa1346020 | AT5G14960.1 | 40.964 | 83 | 48 | 1 | 92 | 174 | 5 | 86 | 1.88e-12 | 68.2 |
| Msa1346020 | AT3G48160.1 | 36.458 | 96 | 61 | 0 | 97 | 192 | 31 | 126 | 2.24e-12 | 68.2 |
| Msa1346020 | AT3G48160.2 | 36.458 | 96 | 61 | 0 | 97 | 192 | 31 | 126 | 2.34e-12 | 68.2 |
| Msa1346020 | AT3G01330.1 | 37.931 | 87 | 53 | 1 | 89 | 175 | 10 | 95 | 9.35e-11 | 63.2 |
Find 116 sgRNAs with CRISPR-Local
Find 302 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATCAAACTGATAAATTTCT+TGG | 0.195269 | tig0008064:-2300 | None:intergenic |
| TACCATTATGCTTTCCTCTT+TGG | 0.206217 | tig0008064:-1981 | None:intergenic |
| ACAAATTACTCCTACGGATT+TGG | 0.244715 | tig0008064:+5096 | Msa1346020:CDS |
| TCGCTTGACTCAGAGGCTTT+TGG | 0.259553 | tig0008064:+5067 | Msa1346020:CDS |
| TAAAACTGCTGAGATCTTAA+AGG | 0.260105 | tig0008064:+2355 | Msa1346020:CDS |
| GTAATCTTTCATTATATTCT+TGG | 0.268044 | tig0008064:+5300 | Msa1346020:three_prime_UTR |
| ATATTTACTTCCACCGTATA+TGG | 0.272766 | tig0008064:-2599 | None:intergenic |
| TGCAGGTTGATGGTGATTAT+TGG | 0.273035 | tig0008064:+5219 | Msa1346020:intron |
| TCTTACCCTTCCATGCTTCC+AGG | 0.295518 | tig0008064:+4452 | Msa1346020:CDS |
| AACATAGAAGAAGAAGTAAA+AGG | 0.295787 | tig0008064:-1187 | None:intergenic |
| TCTTCTTCTTCTGTTAGCTT+TGG | 0.304931 | tig0008064:+849 | Msa1346020:five_prime_UTR |
| CACTCAAATGAGCAGGAATT+AGG | 0.313374 | tig0008064:+4686 | Msa1346020:intron |
| TAAAAGGAGTGAAATTGAAT+TGG | 0.316779 | tig0008064:-1171 | None:intergenic |
| ACAAATGTTCTTGAAGGAAT+AGG | 0.317166 | tig0008064:+2552 | Msa1346020:CDS |
| ATCTTCTAACTTTGCCTGCT+TGG | 0.327328 | tig0008064:-4954 | None:intergenic |
| ACAAACTTGACCAGTGTATA+AGG | 0.337642 | tig0008064:+4185 | Msa1346020:CDS |
| ACCTCAATGAAACTAGCTTT+TGG | 0.340106 | tig0008064:-4585 | None:intergenic |
| AATAAACCAGGCCTTCAAAT+TGG | 0.340864 | tig0008064:-5351 | None:intergenic |
| AAGGGTAAGAATATCTTCTT+TGG | 0.354876 | tig0008064:-4439 | None:intergenic |
| TTCAAGAGGTACAGATTTAT+CGG | 0.359261 | tig0008064:-4755 | None:intergenic |
| TTATGCTTTCCTCTTTGGTT+GGG | 0.365134 | tig0008064:-1976 | None:intergenic |
| CAATCATTCTGTACTGCCTT+TGG | 0.379050 | tig0008064:-4715 | None:intergenic |
| GACATTACAAATGTTCTTGA+AGG | 0.381084 | tig0008064:+2546 | Msa1346020:CDS |
| TAATCTTTCATTATATTCTT+GGG | 0.385134 | tig0008064:+5301 | Msa1346020:three_prime_UTR |
| ATTATGCTTTCCTCTTTGGT+TGG | 0.394432 | tig0008064:-1977 | None:intergenic |
| AAGCTATAGTGTTGAATTTG+AGG | 0.398643 | tig0008064:-1014 | None:intergenic |
| ACAATTCTGTTAGGCCAACT+TGG | 0.403992 | tig0008064:-5256 | None:intergenic |
| TGGACTTGAGCCACGAGAAC+TGG | 0.409912 | tig0008064:+2720 | Msa1346020:CDS |
| GGTCAATATATGTAAATGTT+AGG | 0.413047 | tig0008064:+5497 | Msa1346020:three_prime_UTR |
| AAAAGGAGTGAAATTGAATT+GGG | 0.420142 | tig0008064:-1170 | None:intergenic |
| AAACTTCAAAGAACCATATA+CGG | 0.421244 | tig0008064:+2586 | Msa1346020:CDS |
| ACCTGTATTTGAAATCTGAT+TGG | 0.422930 | tig0008064:-2034 | None:intergenic |
| TGCCTGGCTACCTACGTAAT+AGG | 0.427347 | tig0008064:+962 | Msa1346020:five_prime_UTR |
| AAGTTGAATCCCACCTCATC+AGG | 0.430971 | tig0008064:-4615 | None:intergenic |
| GTAGGCATCGCTGACATATA+TGG | 0.444422 | tig0008064:+5476 | Msa1346020:three_prime_UTR |
| ATGATTGTTAGAAGTGCAAC+TGG | 0.445965 | tig0008064:+4731 | Msa1346020:CDS |
| GTCAATTCTCAGTGAAAGAA+AGG | 0.446192 | tig0008064:+4278 | Msa1346020:intron |
| AACCAAAGAGGAAAGCATAA+TGG | 0.451388 | tig0008064:+1979 | Msa1346020:CDS |
| GCCAATCAGATTTCAAATAC+AGG | 0.451634 | tig0008064:+2033 | Msa1346020:CDS |
| TCTTGGGTTTATCTCTATTG+AGG | 0.455932 | tig0008064:+5317 | Msa1346020:three_prime_UTR |
| CGGCTGCAGAATGGAGGGTG+TGG | 0.459695 | tig0008064:+4994 | Msa1346020:CDS |
| AATCGTTATGACAGTTCCTT+AGG | 0.462492 | tig0008064:+2179 | Msa1346020:CDS |
| AATCCCACCTCATCAGGATC+GGG | 0.468967 | tig0008064:-4609 | None:intergenic |
| CAATTCTGTTAGGCCAACTT+GGG | 0.473073 | tig0008064:-5255 | None:intergenic |
| AATTGACCAATTTGAAGGCC+TGG | 0.473272 | tig0008064:+5345 | Msa1346020:three_prime_UTR |
| AGAAGAAGAAGAAGCGGTGT+GGG | 0.475349 | tig0008064:-832 | None:intergenic |
| GTATCAAGTTAAATCTCTAA+AGG | 0.477562 | tig0008064:+2744 | Msa1346020:CDS |
| ATACAAATTGACCAATTTGA+AGG | 0.481403 | tig0008064:+5340 | Msa1346020:three_prime_UTR |
| TTCTCTTCTTCTTAAAGGGA+AGG | 0.487545 | tig0008064:-910 | None:intergenic |
| TTGGGTTCAGTTTGAAGAAG+TGG | 0.490056 | tig0008064:-1958 | None:intergenic |
| ATCCTATTACGTAGGTAGCC+AGG | 0.492318 | tig0008064:-964 | None:intergenic |
| TAAAATAGAGTGAGTGAGTG+AGG | 0.493949 | tig0008064:-1055 | None:intergenic |
| TTGTTCAGCACAAGTGCAGT+TGG | 0.495436 | tig0008064:+5389 | Msa1346020:three_prime_UTR |
| CAGTTTGATCAATGAGGCTA+AGG | 0.500273 | tig0008064:+2313 | Msa1346020:CDS |
| AGCTATAGTGTTGAATTTGA+GGG | 0.503959 | tig0008064:-1013 | None:intergenic |
| AGTTGGCCTAACAGAATTGT+GGG | 0.505242 | tig0008064:+5259 | Msa1346020:CDS |
| TAAGCAACTTATTACAATCA+AGG | 0.507030 | tig0008064:+4560 | Msa1346020:CDS |
| TGAGGGTGTGAGTGCCAAGC+AGG | 0.512509 | tig0008064:+4940 | Msa1346020:CDS |
| CTGGTCAAGTTTGTATTCCT+CGG | 0.512943 | tig0008064:-4176 | None:intergenic |
| TCATTCTGTACTGCCTTTGG+TGG | 0.517033 | tig0008064:-4712 | None:intergenic |
| CAAGCACGACCACAAGTTTG+AGG | 0.520279 | tig0008064:+4922 | Msa1346020:CDS |
| AATTCAACAAATTACTCCTA+CGG | 0.521739 | tig0008064:+5090 | Msa1346020:CDS |
| CTGCTACTACTACTAGTGTT+GGG | 0.522294 | tig0008064:+1087 | Msa1346020:five_prime_UTR |
| AAGTTGGCCTAACAGAATTG+TGG | 0.522443 | tig0008064:+5258 | Msa1346020:CDS |
| AAAGGACCTGGAAGCATGGA+AGG | 0.527585 | tig0008064:-4458 | None:intergenic |
| CAGCCGTTGCTACTCCGTGA+TGG | 0.529933 | tig0008064:-4977 | None:intergenic |
| GAGTAGCAACGGCTGCAGAA+TGG | 0.537502 | tig0008064:+4985 | Msa1346020:CDS |
| AGGAATTAGGCTTCCACCAA+AGG | 0.540877 | tig0008064:+4699 | Msa1346020:intron |
| AAAATAAAATCCTATTACGT+AGG | 0.549946 | tig0008064:-972 | None:intergenic |
| GAATCCCACCTCATCAGGAT+CGG | 0.556366 | tig0008064:-4610 | None:intergenic |
| TTTCAATCAGATCCCCAAGT+TGG | 0.557691 | tig0008064:+5242 | Msa1346020:CDS |
| ACTGCTACTACTACTAGTGT+TGG | 0.558979 | tig0008064:+1086 | Msa1346020:five_prime_UTR |
| TGAGGAATTTGATCGTCGGT+TGG | 0.559998 | tig0008064:-1142 | None:intergenic |
| GGCTGCAGAATGGAGGGTGT+GGG | 0.561995 | tig0008064:+4995 | Msa1346020:CDS |
| ATTTATCAGTTTGATCAATG+AGG | 0.562030 | tig0008064:+2307 | Msa1346020:CDS |
| AAAATAGAGTGAGTGAGTGA+GGG | 0.562597 | tig0008064:-1054 | None:intergenic |
| TCCAAAAGCTAGTTTCATTG+AGG | 0.562628 | tig0008064:+4584 | Msa1346020:CDS |
| TTAACAGTGTTGCTCTGACT+CGG | 0.564080 | tig0008064:-1928 | None:intergenic |
| AAAGGAGCTTATAAGAAACC+TGG | 0.565536 | tig0008064:+4296 | Msa1346020:CDS |
| ACCTAGCGAACCTTATACAC+TGG | 0.568815 | tig0008064:-4195 | None:intergenic |
| GCTATAGTGTTGAATTTGAG+GGG | 0.568867 | tig0008064:-1012 | None:intergenic |
| AAGCACGACCACAAGTTTGA+GGG | 0.571657 | tig0008064:+4923 | Msa1346020:CDS |
| ACTTGATACTCCAGTTCTCG+TGG | 0.573499 | tig0008064:-2730 | None:intergenic |
| GGTTCAGTTTGAAGAAGTGG+AGG | 0.575422 | tig0008064:-1955 | None:intergenic |
| CAGAAGAGAAGTACTTCAAG+AGG | 0.575816 | tig0008064:-4769 | None:intergenic |
| CTTATTCACAGGGGATGTGA+TGG | 0.579582 | tig0008064:+2700 | Msa1346020:intron |
| TAGCAACGGCTGCAGAATGG+AGG | 0.582567 | tig0008064:+4988 | Msa1346020:CDS |
| CACTCACACCCTCAAACTTG+TGG | 0.587462 | tig0008064:-4931 | None:intergenic |
| GATCCATCACGGAGTAGCAA+CGG | 0.589664 | tig0008064:+4974 | Msa1346020:CDS |
| TTTAAGTTCGCTTGACTCAG+AGG | 0.590229 | tig0008064:+5060 | Msa1346020:CDS |
| CAAACTGAACCCAACCAAAG+AGG | 0.600334 | tig0008064:+1967 | Msa1346020:CDS |
| AGCGAACTTAAACTCCCAGA+AGG | 0.601180 | tig0008064:-5049 | None:intergenic |
| CTTATAAGAAACCTGGAGGA+AGG | 0.602931 | tig0008064:+4303 | Msa1346020:CDS |
| TGCACTTGTGCTGAACAAAG+AGG | 0.604527 | tig0008064:-5384 | None:intergenic |
| TTGATCAATGAGGCTAAGGA+TGG | 0.604623 | tig0008064:+2317 | Msa1346020:CDS |
| GGAAAGAGCATTAATAAACC+AGG | 0.613851 | tig0008064:-5363 | None:intergenic |
| ATATCGCATTTGCTTAGAGT+AGG | 0.616176 | tig0008064:+5458 | Msa1346020:three_prime_UTR |
| GTGGGATTATTAGAAAACCA+AGG | 0.618758 | tig0008064:+5013 | Msa1346020:CDS |
| AGCAACGGCTGCAGAATGGA+GGG | 0.619777 | tig0008064:+4989 | Msa1346020:CDS |
| GCGAACTTAAACTCCCAGAA+GGG | 0.628059 | tig0008064:-5048 | None:intergenic |
| AATTCTGTTAGGCCAACTTG+GGG | 0.629313 | tig0008064:-5254 | None:intergenic |
| TGAGGTCCCCGATCCTGATG+AGG | 0.629610 | tig0008064:+4602 | Msa1346020:CDS |
| CTATAGTGTTGAATTTGAGG+GGG | 0.633244 | tig0008064:-1011 | None:intergenic |
| CTGGAGGAAGGTGAAAACAC+CGG | 0.635878 | tig0008064:+4315 | Msa1346020:CDS |
| ATTCATACATCCAAATCCGT+AGG | 0.638390 | tig0008064:-5106 | None:intergenic |
| TGGAGGAAGGTGAAAACACC+GGG | 0.639040 | tig0008064:+4316 | Msa1346020:CDS |
| AAAATGAGGAATTTGATCGT+CGG | 0.640396 | tig0008064:-1146 | None:intergenic |
| AGTTGATAGCTTATATGCCG+AGG | 0.657732 | tig0008064:+4159 | Msa1346020:CDS |
| CAAAGTTAGAAGATCCATCA+CGG | 0.671165 | tig0008064:+4963 | Msa1346020:CDS |
| GTTGGCCTAACAGAATTGTG+GGG | 0.672060 | tig0008064:+5260 | Msa1346020:CDS |
| CTTCAAAGAACCATATACGG+TGG | 0.675052 | tig0008064:+2589 | Msa1346020:CDS |
| AAGGACCTGGAAGCATGGAA+GGG | 0.676862 | tig0008064:-4457 | None:intergenic |
| ATCCCACCTCATCAGGATCG+GGG | 0.681264 | tig0008064:-4608 | None:intergenic |
| TTGGCCTAACAGAATTGTGG+GGG | 0.685774 | tig0008064:+5261 | Msa1346020:CDS |
| GGAGCTTATAAGAAACCTGG+AGG | 0.707876 | tig0008064:+4299 | Msa1346020:CDS |
| ACTGTCATAACGATTGACTG+TGG | 0.771835 | tig0008064:-2171 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATTATATTATTAATTA+AGG | - | tig0008064:3825-3844 | None:intergenic | 0.0% |
| !! | AAATAAATAAAAATTGAAGA+AGG | - | tig0008064:1239-1258 | None:intergenic | 10.0% |
| !!! | GCTTTTTTTTTTTTTTTTAT+TGG | + | tig0008064:1597-1616 | Msa1346020:intron | 10.0% |
| !!! | ACATTATTTTTATTTTATGT+TGG | + | tig0008064:2115-2134 | Msa1346020:intron | 10.0% |
| !!! | CATTATTTTTATTTTATGTT+GGG | + | tig0008064:2116-2135 | Msa1346020:intron | 10.0% |
| !! | GTAATAAAGAAAAAAAATTA+GGG | - | tig0008064:4805-4824 | None:intergenic | 10.0% |
| !! | AGTAATAAAGAAAAAAAATT+AGG | - | tig0008064:4806-4825 | None:intergenic | 10.0% |
| !!! | CAAAATAAAAATGAAATTTT+AGG | + | tig0008064:5165-5184 | Msa1346020:intron | 10.0% |
| !! | ACTAAAATTAGTATAAGTAA+TGG | - | tig0008064:1577-1596 | None:intergenic | 15.0% |
| !!! | AAATATCTAATCTTTTTATC+TGG | + | tig0008064:2616-2635 | Msa1346020:intron | 15.0% |
| !! | AATGAAATGATAATATATGA+TGG | + | tig0008064:2675-2694 | Msa1346020:intron | 15.0% |
| !! | ATGAAATGATAATATATGAT+GGG | + | tig0008064:2676-2695 | Msa1346020:intron | 15.0% |
| !!! | ATGTTTTTTATTTTGTTTGT+TGG | + | tig0008064:3262-3281 | Msa1346020:intron | 15.0% |
| !!! | ACATTACTATTATAATTTGT+GGG | - | tig0008064:4032-4051 | None:intergenic | 15.0% |
| !! | AACATTACTATTATAATTTG+TGG | - | tig0008064:4033-4052 | None:intergenic | 15.0% |
| !!! | ATTTTTATTTTGCAGTTTTT+TGG | - | tig0008064:5157-5176 | None:intergenic | 15.0% |
| !! | AATAAAATGAATGAAAACTT+TGG | - | tig0008064:5191-5210 | None:intergenic | 15.0% |
| !! | TAATCTTTCATTATATTCTT+GGG | + | tig0008064:5301-5320 | Msa1346020:three_prime_UTR | 15.0% |
| !!! | TATTTTCTCTTCTTCTTAAA+GGG | - | tig0008064:917-936 | None:intergenic | 20.0% |
| !!! | ATATTTTCTCTTCTTCTTAA+AGG | - | tig0008064:918-937 | None:intergenic | 20.0% |
| !! | AAAATAAAATCCTATTACGT+AGG | - | tig0008064:975-994 | None:intergenic | 20.0% |
| !!! | CAAAAAAGATAGGATATTTT+TGG | - | tig0008064:1312-1331 | None:intergenic | 20.0% |
| !!! | TTAGGTTGATTCATAATAAT+TGG | - | tig0008064:1371-1390 | None:intergenic | 20.0% |
| !! | CTTATAATTATGTTTGCTTA+TGG | + | tig0008064:1705-1724 | Msa1346020:intron | 20.0% |
| !!! | TATTTTTATTTTATGTTGGG+TGG | + | tig0008064:2119-2138 | Msa1346020:intron | 20.0% |
| !!! | TCATTTTGACTGTAAAAAAA+AGG | - | tig0008064:3657-3676 | None:intergenic | 20.0% |
| !!! | TCATATGTTTTACACATATT+TGG | - | tig0008064:4061-4080 | None:intergenic | 20.0% |
| !! | TAAGAAATCAAAACTCATAA+AGG | - | tig0008064:4366-4385 | None:intergenic | 20.0% |
| !! | TATCTTCTTTGGTAAAAAAA+AGG | - | tig0008064:4431-4450 | None:intergenic | 20.0% |
| !!! | TATACAAAGTTTTCAATACT+TGG | - | tig0008064:4488-4507 | None:intergenic | 20.0% |
| !! | ACAAAAGTGAGTAATAATAA+TGG | - | tig0008064:4523-4542 | None:intergenic | 20.0% |
| !!! | TTAATATCCTTTTTCATTGT+TGG | + | tig0008064:4848-4867 | Msa1346020:intron | 20.0% |
| !! | GGTTATTAATTAATCATTAG+AGG | - | tig0008064:5136-5155 | None:intergenic | 20.0% |
| !!! | CATTTTATTTGTATTTTTGC+AGG | + | tig0008064:5202-5221 | Msa1346020:intron | 20.0% |
| !! | GTAATCTTTCATTATATTCT+TGG | + | tig0008064:5300-5319 | Msa1346020:three_prime_UTR | 20.0% |
| ! | AAATTGAATTGGGAAAAATG+AGG | - | tig0008064:1163-1182 | None:intergenic | 25.0% |
| ! | AAAAGGAGTGAAATTGAATT+GGG | - | tig0008064:1173-1192 | None:intergenic | 25.0% |
| ! | TAAAAGGAGTGAAATTGAAT+TGG | - | tig0008064:1174-1193 | None:intergenic | 25.0% |
| ! | AACATAGAAGAAGAAGTAAA+AGG | - | tig0008064:1190-1209 | None:intergenic | 25.0% |
| ! | TAAAAATTGAAGAAGGAAGA+AGG | - | tig0008064:1232-1251 | None:intergenic | 25.0% |
| ! | GGTTAATGTACAAAAAAGAT+AGG | - | tig0008064:1322-1341 | None:intergenic | 25.0% |
| ! | AACATGAAGAATAAAGTAAC+AGG | - | tig0008064:1343-1362 | None:intergenic | 25.0% |
| !! | CATTGTTGACTAATATTTGT+TGG | - | tig0008064:1776-1795 | None:intergenic | 25.0% |
| ! | GATCAAACTGATAAATTTCT+TGG | - | tig0008064:2303-2322 | None:intergenic | 25.0% |
| ! | ATTTATCAGTTTGATCAATG+AGG | + | tig0008064:2307-2326 | Msa1346020:CDS | 25.0% |
| ! | TTCATTGTATATATGCTCAA+TGG | + | tig0008064:2392-2411 | Msa1346020:intron | 25.0% |
| !! | TGTATTATTAAAGCACTAGT+AGG | - | tig0008064:2449-2468 | None:intergenic | 25.0% |
| !! | AATTTGACATTTGTCTTTTC+AGG | + | tig0008064:2503-2522 | Msa1346020:intron | 25.0% |
| ! | AAACTTCAAAGAACCATATA+CGG | + | tig0008064:2586-2605 | Msa1346020:CDS | 25.0% |
| !! | TTTTATCTGGTACTTACTAT+TGG | + | tig0008064:2629-2648 | Msa1346020:intron | 25.0% |
| ! | TTTATCTGGTACTTACTATT+GGG | + | tig0008064:2630-2649 | Msa1346020:intron | 25.0% |
| ! | GTATCAAGTTAAATCTCTAA+AGG | + | tig0008064:2744-2763 | Msa1346020:CDS | 25.0% |
| !!! | ATCTATTTTTACTTGTCAGT+TGG | + | tig0008064:2774-2793 | Msa1346020:intron | 25.0% |
| ! | TTCATCTATAGTATACAAAC+CGG | - | tig0008064:3004-3023 | None:intergenic | 25.0% |
| !!! | TAGAAGTATTTCAATCTTGA+GGG | - | tig0008064:3205-3224 | None:intergenic | 25.0% |
| !!! | ATAGAAGTATTTCAATCTTG+AGG | - | tig0008064:3206-3225 | None:intergenic | 25.0% |
| !!! | TTTATTTTGTTTGTTGGATG+AGG | + | tig0008064:3268-3287 | Msa1346020:intron | 25.0% |
| !! | TTGATTTGATATCATCATGT+TGG | + | tig0008064:3314-3333 | Msa1346020:intron | 25.0% |
| ! | TTGGTTCAATTCTGATAATT+TGG | + | tig0008064:4121-4140 | Msa1346020:intron | 25.0% |
| ! | AGTGAGTTTATTTGATCATT+AGG | + | tig0008064:4403-4422 | Msa1346020:intron | 25.0% |
| !! | TTTTCAATACTTGGAGAAAA+AGG | - | tig0008064:4479-4498 | None:intergenic | 25.0% |
| ! | TAAGCAACTTATTACAATCA+AGG | + | tig0008064:4560-4579 | Msa1346020:CDS | 25.0% |
| ! | AGGATATTAACAAATAAGCA+CGG | - | tig0008064:4838-4857 | None:intergenic | 25.0% |
| ! | CTTTAAACCAACAATGAAAA+AGG | - | tig0008064:4858-4877 | None:intergenic | 25.0% |
| ! | AATTCAACAAATTACTCCTA+CGG | + | tig0008064:5090-5109 | Msa1346020:CDS | 25.0% |
| ! | ATACAAATTGACCAATTTGA+AGG | + | tig0008064:5340-5359 | Msa1346020:three_prime_UTR | 25.0% |
| ! | GGTCAATATATGTAAATGTT+AGG | + | tig0008064:5497-5516 | Msa1346020:three_prime_UTR | 25.0% |
| !!! | TTTTTATTTTTATCGCTGCC+TGG | + | tig0008064:946-965 | Msa1346020:five_prime_UTR | 30.0% |
| ! | AGCTATAGTGTTGAATTTGA+GGG | - | tig0008064:1016-1035 | None:intergenic | 30.0% |
| ! | AAGCTATAGTGTTGAATTTG+AGG | - | tig0008064:1017-1036 | None:intergenic | 30.0% |
| AAAATGAGGAATTTGATCGT+CGG | - | tig0008064:1149-1168 | None:intergenic | 30.0% | |
| AAGAGATCTCTTAACATCTT+AGG | - | tig0008064:1389-1408 | None:intergenic | 30.0% | |
| ATAACATAGGTGCATTCTTA+GGG | - | tig0008064:1436-1455 | None:intergenic | 30.0% | |
| TATAACATAGGTGCATTCTT+AGG | - | tig0008064:1437-1456 | None:intergenic | 30.0% | |
| AAGAATGCACCTATGTTATA+TGG | + | tig0008064:1437-1456 | Msa1346020:intron | 30.0% | |
| GAGACTAATCCATATAACAT+AGG | - | tig0008064:1449-1468 | None:intergenic | 30.0% | |
| TTAGTTGTTAGAACTGTTCT+AGG | + | tig0008064:1527-1546 | Msa1346020:intron | 30.0% | |
| ! | ACCTGTATTTGAAATCTGAT+TGG | - | tig0008064:2037-2056 | None:intergenic | 30.0% |
| !!! | AGCAGTTTTATTTAGGTCAA+GGG | - | tig0008064:2345-2364 | None:intergenic | 30.0% |
| !!! | AGATCTCAGCAGTTTTATTT+AGG | - | tig0008064:2352-2371 | None:intergenic | 30.0% |
| TAAAACTGCTGAGATCTTAA+AGG | + | tig0008064:2355-2374 | Msa1346020:CDS | 30.0% | |
| !!! | TGTCTTTTCAGGTTCAAAAA+AGG | + | tig0008064:2514-2533 | Msa1346020:intron | 30.0% |
| GACATTACAAATGTTCTTGA+AGG | + | tig0008064:2546-2565 | Msa1346020:CDS | 30.0% | |
| ACAAATGTTCTTGAAGGAAT+AGG | + | tig0008064:2552-2571 | Msa1346020:CDS | 30.0% | |
| ATATTTACTTCCACCGTATA+TGG | - | tig0008064:2602-2621 | None:intergenic | 30.0% | |
| GTATGATCGGATGATTAATT+AGG | + | tig0008064:2835-2854 | Msa1346020:intron | 30.0% | |
| ! | TTTAGTTTCTTCCAAGTCAT+AGG | + | tig0008064:2908-2927 | Msa1346020:intron | 30.0% |
| AATACAAGTTACTAGCAGTA+AGG | + | tig0008064:3099-3118 | Msa1346020:intron | 30.0% | |
| TTGAAATACTTCTATGTGAC+TGG | + | tig0008064:3211-3230 | Msa1346020:intron | 30.0% | |
| ACAGTCAAAATGAAGAAGAA+AGG | + | tig0008064:3664-3683 | Msa1346020:intron | 30.0% | |
| CAGTCAAAATGAAGAAGAAA+GGG | + | tig0008064:3665-3684 | Msa1346020:intron | 30.0% | |
| TATTACCTGAACCTAAGAAA+GGG | - | tig0008064:3985-4004 | None:intergenic | 30.0% | |
| AAGGGTAAGAATATCTTCTT+TGG | - | tig0008064:4442-4461 | None:intergenic | 30.0% | |
| ! | TTCAAGAGGTACAGATTTAT+CGG | - | tig0008064:4758-4777 | None:intergenic | 30.0% |
| AGTTAGAGACACATGAAATA+CGG | - | tig0008064:4882-4901 | None:intergenic | 30.0% | |
| !! | TTTGTATTTTTGCAGGTTGA+TGG | + | tig0008064:5209-5228 | Msa1346020:intron | 30.0% |
| AGAAGAAGAAGAAGAAGAAG+CGG | - | tig0008064:841-860 | None:intergenic | 35.0% | |
| ! | TCTTCTTCTTCTGTTAGCTT+TGG | + | tig0008064:849-868 | Msa1346020:five_prime_UTR | 35.0% |
| TTCTCTTCTTCTTAAAGGGA+AGG | - | tig0008064:913-932 | None:intergenic | 35.0% | |
| ! | CTATAGTGTTGAATTTGAGG+GGG | - | tig0008064:1014-1033 | None:intergenic | 35.0% |
| ! | GCTATAGTGTTGAATTTGAG+GGG | - | tig0008064:1015-1034 | None:intergenic | 35.0% |
| AAAATAGAGTGAGTGAGTGA+GGG | - | tig0008064:1057-1076 | None:intergenic | 35.0% | |
| TAAAATAGAGTGAGTGAGTG+AGG | - | tig0008064:1058-1077 | None:intergenic | 35.0% | |
| AGAAGGAAGAAGAAGACTTA+CGG | - | tig0008064:1215-1234 | None:intergenic | 35.0% | |
| ATTTCACACACAAGATCGAT+CGG | + | tig0008064:1272-1291 | Msa1346020:intron | 35.0% | |
| AGAGATCTCTTCTTCTTTCA+TGG | + | tig0008064:1398-1417 | Msa1346020:intron | 35.0% | |
| GAGATCTCTTCTTCTTTCAT+GGG | + | tig0008064:1399-1418 | Msa1346020:intron | 35.0% | |
| !! | GTTATATGGATTAGTCTCTG+CGG | + | tig0008064:1451-1470 | Msa1346020:intron | 35.0% |
| ! | CAGTTCTAACAACTAACAAG+CGG | - | tig0008064:1523-1542 | None:intergenic | 35.0% |
| GCGACAATGTTACAATTTGT+TGG | + | tig0008064:1622-1641 | Msa1346020:intron | 35.0% | |
| ! | GCAAGCATTTAAAGTATGAG+CGG | - | tig0008064:1821-1840 | None:intergenic | 35.0% |
| TTATGCTTTCCTCTTTGGTT+GGG | - | tig0008064:1979-1998 | None:intergenic | 35.0% | |
| ATTATGCTTTCCTCTTTGGT+TGG | - | tig0008064:1980-1999 | None:intergenic | 35.0% | |
| ! | AACCAAAGAGGAAAGCATAA+TGG | + | tig0008064:1979-1998 | Msa1346020:CDS | 35.0% |
| TACCATTATGCTTTCCTCTT+TGG | - | tig0008064:1984-2003 | None:intergenic | 35.0% | |
| GCCAATCAGATTTCAAATAC+AGG | + | tig0008064:2033-2052 | Msa1346020:CDS | 35.0% | |
| AATCGTTATGACAGTTCCTT+AGG | + | tig0008064:2179-2198 | Msa1346020:CDS | 35.0% | |
| CATAAAAGATCACTTGAGTG+TGG | - | tig0008064:2210-2229 | None:intergenic | 35.0% | |
| TTACATCATGTACTGTTTGC+AGG | + | tig0008064:2269-2288 | Msa1346020:intron | 35.0% | |
| !!! | CAGCAGTTTTATTTAGGTCA+AGG | - | tig0008064:2346-2365 | None:intergenic | 35.0% |
| ! | TTTTACGCATCTGGTATGAT+CGG | + | tig0008064:2822-2841 | Msa1346020:intron | 35.0% |
| ACTGCTAGCAACAAATACTT+CGG | - | tig0008064:3038-3057 | None:intergenic | 35.0% | |
| ! | CATTATTTCTTGAAGCCGAA+AGG | + | tig0008064:3143-3162 | Msa1346020:intron | 35.0% |
| ! | AGAACAGAGATGAGATTTTG+TGG | - | tig0008064:3623-3642 | None:intergenic | 35.0% |
| GGAAGAAGTGAAAGATTGAT+TGG | + | tig0008064:3686-3705 | Msa1346020:intron | 35.0% | |
| ! | GTTCCAATTTTCCCTTTCTT+AGG | + | tig0008064:3971-3990 | Msa1346020:intron | 35.0% |
| GAACCTAAGAAAGGGAAAAT+TGG | - | tig0008064:3977-3996 | None:intergenic | 35.0% | |
| ! | ATTTTCCCTTTCTTAGGTTC+AGG | + | tig0008064:3977-3996 | Msa1346020:intron | 35.0% |
| CTATTACCTGAACCTAAGAA+AGG | - | tig0008064:3986-4005 | None:intergenic | 35.0% | |
| !! | ATTTGTGGGTAAAGAGTGTT+TGG | - | tig0008064:4018-4037 | None:intergenic | 35.0% |
| CAAATTAATGCTCTGCAGTA+TGG | + | tig0008064:4091-4110 | Msa1346020:intron | 35.0% | |
| TCTGCAGTATGGAAATTGTT+TGG | + | tig0008064:4102-4121 | Msa1346020:intron | 35.0% | |
| ACAAACTTGACCAGTGTATA+AGG | + | tig0008064:4185-4204 | Msa1346020:CDS | 35.0% | |
| GTCAATTCTCAGTGAAAGAA+AGG | + | tig0008064:4278-4297 | Msa1346020:intron | 35.0% | |
| AAAGGAGCTTATAAGAAACC+TGG | + | tig0008064:4296-4315 | Msa1346020:CDS | 35.0% | |
| ! | TCCAAAAGCTAGTTTCATTG+AGG | + | tig0008064:4584-4603 | Msa1346020:CDS | 35.0% |
| !!! | ACCTCAATGAAACTAGCTTT+TGG | - | tig0008064:4588-4607 | None:intergenic | 35.0% |
| ! | ATGATTGTTAGAAGTGCAAC+TGG | + | tig0008064:4731-4750 | Msa1346020:CDS | 35.0% |
| CAAAGTTAGAAGATCCATCA+CGG | + | tig0008064:4963-4982 | Msa1346020:CDS | 35.0% | |
| GTGGGATTATTAGAAAACCA+AGG | + | tig0008064:5013-5032 | Msa1346020:CDS | 35.0% | |
| !! | AAGGGTTTTTCTGAAAACCT+TGG | - | tig0008064:5033-5052 | None:intergenic | 35.0% |
| ! | GTTTTCAGAAAAACCCTTCT+GGG | + | tig0008064:5035-5054 | Msa1346020:CDS | 35.0% |
| ACAAATTACTCCTACGGATT+TGG | + | tig0008064:5096-5115 | Msa1346020:CDS | 35.0% | |
| ATTCATACATCCAAATCCGT+AGG | - | tig0008064:5109-5128 | None:intergenic | 35.0% | |
| TCTTGGGTTTATCTCTATTG+AGG | + | tig0008064:5317-5336 | Msa1346020:three_prime_UTR | 35.0% | |
| AATAAACCAGGCCTTCAAAT+TGG | - | tig0008064:5354-5373 | None:intergenic | 35.0% | |
| !! | GGAAAGAGCATTAATAAACC+AGG | - | tig0008064:5366-5385 | None:intergenic | 35.0% |
| ATATCGCATTTGCTTAGAGT+AGG | + | tig0008064:5458-5477 | Msa1346020:three_prime_UTR | 35.0% | |
| ACTGCTACTACTACTAGTGT+TGG | + | tig0008064:1086-1105 | Msa1346020:five_prime_UTR | 40.0% | |
| CTGCTACTACTACTAGTGTT+GGG | + | tig0008064:1087-1106 | Msa1346020:five_prime_UTR | 40.0% | |
| GAAGGAAGAAGAAGACTTAC+GGG | - | tig0008064:1214-1233 | None:intergenic | 40.0% | |
| ! | TTAACAGTGTTGCTCTGACT+CGG | - | tig0008064:1931-1950 | None:intergenic | 40.0% |
| TTGGGTTCAGTTTGAAGAAG+TGG | - | tig0008064:1961-1980 | None:intergenic | 40.0% | |
| CTGAATTCAGAGAGTCTGAT+AGG | - | tig0008064:2151-2170 | None:intergenic | 40.0% | |
| ACTGTCATAACGATTGACTG+TGG | - | tig0008064:2174-2193 | None:intergenic | 40.0% | |
| CAGTTTGATCAATGAGGCTA+AGG | + | tig0008064:2313-2332 | Msa1346020:CDS | 40.0% | |
| TTGATCAATGAGGCTAAGGA+TGG | + | tig0008064:2317-2336 | Msa1346020:CDS | 40.0% | |
| AGTAGGTGAAGCTCAAAATC+AGG | - | tig0008064:2432-2451 | None:intergenic | 40.0% | |
| CTTCAAAGAACCATATACGG+TGG | + | tig0008064:2589-2608 | Msa1346020:CDS | 40.0% | |
| !! | ATATGATGGGCCTTATTCAC+AGG | + | tig0008064:2689-2708 | Msa1346020:intron | 40.0% |
| !! | TATGATGGGCCTTATTCACA+GGG | + | tig0008064:2690-2709 | Msa1346020:intron | 40.0% |
| ATGCGTAAAAGCAGGAAATG+TGG | - | tig0008064:2812-2831 | None:intergenic | 40.0% | |
| !! | ATTTCCTGCTTTTACGCATC+TGG | + | tig0008064:2813-2832 | Msa1346020:intron | 40.0% |
| TCTTCCAAGTCATAGGTTTC+AGG | + | tig0008064:2915-2934 | Msa1346020:intron | 40.0% | |
| GATTCCTGAAACCTATGACT+TGG | - | tig0008064:2922-2941 | None:intergenic | 40.0% | |
| CAGGAATCTTATTGTCTTCG+TGG | + | tig0008064:2934-2953 | Msa1346020:intron | 40.0% | |
| TCCTAGGTGCAATGTCTAAT+CGG | - | tig0008064:2977-2996 | None:intergenic | 40.0% | |
| TATACAAACCGGAGATTCCT+AGG | - | tig0008064:2993-3012 | None:intergenic | 40.0% | |
| TGTTGCTAGCAGTACAGTTA+AGG | + | tig0008064:3045-3064 | Msa1346020:intron | 40.0% | |
| ATGTCTTCAGTAGCTCAAGT+TGG | - | tig0008064:3126-3145 | None:intergenic | 40.0% | |
| ! | TGAAGCCGAAAGGAAACTTT+TGG | + | tig0008064:3153-3172 | Msa1346020:intron | 40.0% |
| ! | GAAGCCGAAAGGAAACTTTT+GGG | + | tig0008064:3154-3173 | Msa1346020:intron | 40.0% |
| TCAGCCCAAAAGTTTCCTTT+CGG | - | tig0008064:3161-3180 | None:intergenic | 40.0% | |
| GATTGGAGATCTAGAGATCT+AGG | + | tig0008064:3703-3722 | Msa1346020:intron | 40.0% | |
| GCGTATCATAGTTGTCAAAG+CGG | - | tig0008064:3940-3959 | None:intergenic | 40.0% | |
| CTATGATACGCAATCAGTCT+TGG | + | tig0008064:3949-3968 | Msa1346020:intron | 40.0% | |
| !! | GGTAAAGAGTGTTTGGCTAA+AGG | - | tig0008064:4011-4030 | None:intergenic | 40.0% |
| CTGATAATTTGGTCCATTGC+AGG | + | tig0008064:4132-4151 | Msa1346020:intron | 40.0% | |
| CTATCAACTTCATCCTGCAA+TGG | - | tig0008064:4148-4167 | None:intergenic | 40.0% | |
| !! | AGTTGATAGCTTATATGCCG+AGG | + | tig0008064:4159-4178 | Msa1346020:CDS | 40.0% |
| CTGGTCAAGTTTGTATTCCT+CGG | - | tig0008064:4179-4198 | None:intergenic | 40.0% | |
| CTTATAAGAAACCTGGAGGA+AGG | + | tig0008064:4303-4322 | Msa1346020:CDS | 40.0% | |
| TGTCAGTAGTTCTTACTTCC+CGG | - | tig0008064:4337-4356 | None:intergenic | 40.0% | |
| ATACTTGGAGAAAAAGGACC+TGG | - | tig0008064:4473-4492 | None:intergenic | 40.0% | |
| GAGGTGGGATTCAACTTATA+TGG | + | tig0008064:4621-4640 | Msa1346020:intron | 40.0% | |
| CACTCAAATGAGCAGGAATT+AGG | + | tig0008064:4686-4705 | Msa1346020:intron | 40.0% | |
| CAATCATTCTGTACTGCCTT+TGG | - | tig0008064:4718-4737 | None:intergenic | 40.0% | |
| !! | CAGAAGAGAAGTACTTCAAG+AGG | - | tig0008064:4772-4791 | None:intergenic | 40.0% |
| ATCTTCTAACTTTGCCTGCT+TGG | - | tig0008064:4957-4976 | None:intergenic | 40.0% | |
| ! | GGTTTTCAGAAAAACCCTTC+TGG | + | tig0008064:5034-5053 | Msa1346020:CDS | 40.0% |
| ! | TTTAAGTTCGCTTGACTCAG+AGG | + | tig0008064:5060-5079 | Msa1346020:CDS | 40.0% |
| !! | TGCAGGTTGATGGTGATTAT+TGG | + | tig0008064:5219-5238 | Msa1346020:intron | 40.0% |
| TTTCAATCAGATCCCCAAGT+TGG | + | tig0008064:5242-5261 | Msa1346020:CDS | 40.0% | |
| AATTCTGTTAGGCCAACTTG+GGG | - | tig0008064:5257-5276 | None:intergenic | 40.0% | |
| CAATTCTGTTAGGCCAACTT+GGG | - | tig0008064:5258-5277 | None:intergenic | 40.0% | |
| ACAATTCTGTTAGGCCAACT+TGG | - | tig0008064:5259-5278 | None:intergenic | 40.0% | |
| ! | AAGTTGGCCTAACAGAATTG+TGG | + | tig0008064:5258-5277 | Msa1346020:CDS | 40.0% |
| ! | AGTTGGCCTAACAGAATTGT+GGG | + | tig0008064:5259-5278 | Msa1346020:CDS | 40.0% |
| AATTGACCAATTTGAAGGCC+TGG | + | tig0008064:5345-5364 | Msa1346020:three_prime_UTR | 40.0% | |
| AGAAGAAGAAGAAGCGGTGT+GGG | - | tig0008064:835-854 | None:intergenic | 45.0% | |
| AAGAAGAAGAAGAAGCGGTG+TGG | - | tig0008064:836-855 | None:intergenic | 45.0% | |
| ATCCTATTACGTAGGTAGCC+AGG | - | tig0008064:967-986 | None:intergenic | 45.0% | |
| !! | TGAGTGAGTGAGGGTTTTAG+CGG | - | tig0008064:1048-1067 | None:intergenic | 45.0% |
| TGAGGAATTTGATCGTCGGT+TGG | - | tig0008064:1145-1164 | None:intergenic | 45.0% | |
| CATAGGTGCATTCTTAGGGT+CGG | - | tig0008064:1432-1451 | None:intergenic | 45.0% | |
| !! | TATGGATTAGTCTCTGCGGT+TGG | + | tig0008064:1455-1474 | Msa1346020:intron | 45.0% |
| !! | ATGGATTAGTCTCTGCGGTT+GGG | + | tig0008064:1456-1475 | Msa1346020:intron | 45.0% |
| !! | GTTGGGCGCTGAATTTAAAG+TGG | + | tig0008064:1473-1492 | Msa1346020:intron | 45.0% |
| GGTTCAGTTTGAAGAAGTGG+AGG | - | tig0008064:1958-1977 | None:intergenic | 45.0% | |
| CAAACTGAACCCAACCAAAG+AGG | + | tig0008064:1967-1986 | Msa1346020:CDS | 45.0% | |
| CTTGAGTGTGGACATACCTA+AGG | - | tig0008064:2198-2217 | None:intergenic | 45.0% | |
| GCTCAATGGTTCGTATTAGC+AGG | + | tig0008064:2406-2425 | Msa1346020:intron | 45.0% | |
| !! | ATGATGGGCCTTATTCACAG+GGG | + | tig0008064:2691-2710 | Msa1346020:intron | 45.0% |
| CATCACATCCCCTGTGAATA+AGG | - | tig0008064:2702-2721 | None:intergenic | 45.0% | |
| CTTATTCACAGGGGATGTGA+TGG | + | tig0008064:2700-2719 | Msa1346020:intron | 45.0% | |
| ACTTGATACTCCAGTTCTCG+TGG | - | tig0008064:2733-2752 | None:intergenic | 45.0% | |
| CATACCAGATGCGTAAAAGC+AGG | - | tig0008064:2820-2839 | None:intergenic | 45.0% | |
| ACCGATTAGACATTGCACCT+AGG | + | tig0008064:2973-2992 | Msa1346020:intron | 45.0% | |
| ACATTGCACCTAGGAATCTC+CGG | + | tig0008064:2982-3001 | Msa1346020:intron | 45.0% | |
| CGCAACTCTGTTGTCAATAG+CGG | + | tig0008064:3421-3440 | Msa1346020:intron | 45.0% | |
| TTGTCAATAGCGGTCTAACG+CGG | + | tig0008064:3431-3450 | Msa1346020:intron | 45.0% | |
| TAGTTGTCAAAGCGGAAACG+CGG | - | tig0008064:3932-3951 | None:intergenic | 45.0% | |
| ACCAGTGTATAAGGTTCGCT+AGG | + | tig0008064:4194-4213 | Msa1346020:intron | 45.0% | |
| ACCTAGCGAACCTTATACAC+TGG | - | tig0008064:4198-4217 | None:intergenic | 45.0% | |
| GGAGCTTATAAGAAACCTGG+AGG | + | tig0008064:4299-4318 | Msa1346020:CDS | 45.0% | |
| AGAAAAAGGACCTGGAAGCA+TGG | - | tig0008064:4465-4484 | None:intergenic | 45.0% | |
| AAGTTGAATCCCACCTCATC+AGG | - | tig0008064:4618-4637 | None:intergenic | 45.0% | |
| GACTTCTCACTCAAATGAGC+AGG | + | tig0008064:4679-4698 | Msa1346020:intron | 45.0% | |
| AGGAATTAGGCTTCCACCAA+AGG | + | tig0008064:4699-4718 | Msa1346020:intron | 45.0% | |
| TCATTCTGTACTGCCTTTGG+TGG | - | tig0008064:4715-4734 | None:intergenic | 45.0% | |
| AAGCACGACCACAAGTTTGA+GGG | + | tig0008064:4923-4942 | Msa1346020:CDS | 45.0% | |
| GCGAACTTAAACTCCCAGAA+GGG | - | tig0008064:5051-5070 | None:intergenic | 45.0% | |
| AGCGAACTTAAACTCCCAGA+AGG | - | tig0008064:5052-5071 | None:intergenic | 45.0% | |
| ! | GTTGGCCTAACAGAATTGTG+GGG | + | tig0008064:5260-5279 | Msa1346020:CDS | 45.0% |
| TTGGCCTAACAGAATTGTGG+GGG | + | tig0008064:5261-5280 | Msa1346020:CDS | 45.0% | |
| TCTACCCCCACAATTCTGTT+AGG | - | tig0008064:5268-5287 | None:intergenic | 45.0% | |
| TGCACTTGTGCTGAACAAAG+AGG | - | tig0008064:5387-5406 | None:intergenic | 45.0% | |
| TTGTTCAGCACAAGTGCAGT+TGG | + | tig0008064:5389-5408 | Msa1346020:three_prime_UTR | 45.0% | |
| ! | GTAGGCATCGCTGACATATA+TGG | + | tig0008064:5476-5495 | Msa1346020:three_prime_UTR | 45.0% |
| !!! | CTTTTTTTTTTTTTTTTATT+GGG | + | tig0008064:1598-1617 | Msa1346020:intron | 5.0% |
| !! | TAAATAGTATATAAAAAATA+TGG | - | tig0008064:2892-2911 | None:intergenic | 5.0% |
| TGCCTGGCTACCTACGTAAT+AGG | + | tig0008064:962-981 | Msa1346020:five_prime_UTR | 50.0% | |
| CAGTACAGTTAAGGCTGCTG+AGG | + | tig0008064:3054-3073 | Msa1346020:intron | 50.0% | |
| GCTGCTGAGGATGATAACAG+TGG | + | tig0008064:3067-3086 | Msa1346020:intron | 50.0% | |
| AGGCAAACGCGGAACAAAAG+CGG | + | tig0008064:3509-3528 | Msa1346020:intron | 50.0% | |
| GGCAAAAAGCGGGTCAATGA+GGG | + | tig0008064:3541-3560 | Msa1346020:intron | 50.0% | |
| GGGTCAATGAGGGCAAAAAG+CGG | + | tig0008064:3551-3570 | Msa1346020:intron | 50.0% | |
| GGTCAATGAGGGCAAAAAGC+GGG | + | tig0008064:3552-3571 | Msa1346020:intron | 50.0% | |
| CTGGAGGAAGGTGAAAACAC+CGG | + | tig0008064:4315-4334 | Msa1346020:CDS | 50.0% | |
| TGGAGGAAGGTGAAAACACC+GGG | + | tig0008064:4316-4335 | Msa1346020:CDS | 50.0% | |
| TCTTACCCTTCCATGCTTCC+AGG | + | tig0008064:4452-4471 | Msa1346020:CDS | 50.0% | |
| ! | AAGGACCTGGAAGCATGGAA+GGG | - | tig0008064:4460-4479 | None:intergenic | 50.0% |
| ! | AAAGGACCTGGAAGCATGGA+AGG | - | tig0008064:4461-4480 | None:intergenic | 50.0% |
| AATCCCACCTCATCAGGATC+GGG | - | tig0008064:4612-4631 | None:intergenic | 50.0% | |
| GAATCCCACCTCATCAGGAT+CGG | - | tig0008064:4613-4632 | None:intergenic | 50.0% | |
| CAAGCACGACCACAAGTTTG+AGG | + | tig0008064:4922-4941 | Msa1346020:CDS | 50.0% | |
| CACTCACACCCTCAAACTTG+TGG | - | tig0008064:4934-4953 | None:intergenic | 50.0% | |
| GATCCATCACGGAGTAGCAA+CGG | + | tig0008064:4974-4993 | Msa1346020:CDS | 50.0% | |
| ! | TCGCTTGACTCAGAGGCTTT+TGG | + | tig0008064:5067-5086 | Msa1346020:CDS | 50.0% |
| !! | TGAGGGTTTTAGCGGCAGGA+AGG | - | tig0008064:1040-1059 | None:intergenic | 55.0% |
| !! | TGAGTGAGGGTTTTAGCGGC+AGG | - | tig0008064:1044-1063 | None:intergenic | 55.0% |
| TGGACTTGAGCCACGAGAAC+TGG | + | tig0008064:2720-2739 | Msa1346020:CDS | 55.0% | |
| GGCAAACGCGGAACAAAAGC+GGG | + | tig0008064:3510-3529 | Msa1346020:intron | 55.0% | |
| GGAACAAAAGCGGGTCAACG+CGG | + | tig0008064:3519-3538 | Msa1346020:intron | 55.0% | |
| GAACAAAAGCGGGTCAACGC+GGG | + | tig0008064:3520-3539 | Msa1346020:intron | 55.0% | |
| GGGCAAAAAGCGGGTCAATG+AGG | + | tig0008064:3540-3559 | Msa1346020:intron | 55.0% | |
| ! | TACCGCGCCGCGTCAATTTT+TGG | + | tig0008064:3891-3910 | Msa1346020:intron | 55.0% |
| ! | ACCGCGCCGCGTCAATTTTT+GGG | + | tig0008064:3892-3911 | Msa1346020:intron | 55.0% |
| GGCCACCCCAAAAATTGACG+CGG | - | tig0008064:3901-3920 | None:intergenic | 55.0% | |
| ! | CGGTGTTTTCACCTTCCTCC+AGG | - | tig0008064:4317-4336 | None:intergenic | 55.0% |
| ATCCCACCTCATCAGGATCG+GGG | - | tig0008064:4611-4630 | None:intergenic | 55.0% | |
| GAGTAGCAACGGCTGCAGAA+TGG | + | tig0008064:4985-5004 | Msa1346020:CDS | 55.0% | |
| TAGCAACGGCTGCAGAATGG+AGG | + | tig0008064:4988-5007 | Msa1346020:CDS | 55.0% | |
| AGCAACGGCTGCAGAATGGA+GGG | + | tig0008064:4989-5008 | Msa1346020:CDS | 55.0% | |
| CGTTTGCCTAACGCGCGACT+CGG | - | tig0008064:3498-3517 | None:intergenic | 60.0% | |
| AGTCGCGCGTTAGGCAAACG+CGG | + | tig0008064:3498-3517 | Msa1346020:intron | 60.0% | |
| GGGTCAACGCGGGCAAAAAG+CGG | + | tig0008064:3530-3549 | Msa1346020:intron | 60.0% | |
| GGTCAACGCGGGCAAAAAGC+GGG | + | tig0008064:3531-3550 | Msa1346020:intron | 60.0% | |
| GGGCAAAAAGCGGGTCAACG+CGG | + | tig0008064:3561-3580 | Msa1346020:intron | 60.0% | |
| GGCAAAAAGCGGGTCAACGC+GGG | + | tig0008064:3562-3581 | Msa1346020:intron | 60.0% | |
| GGGTCAACGCGGGCAAAAAG+CGG | + | tig0008064:3530-3549 | Msa1346020:intron | 60.0% | |
| GGTCAACGCGGGCAAAAAGC+GGG | + | tig0008064:3531-3550 | Msa1346020:intron | 60.0% | |
| ! | GCGGGCGCTTTTACATGACG+CGG | - | tig0008064:3859-3878 | None:intergenic | 60.0% |
| AATTGACGCGGCGCGGTAAG+CGG | - | tig0008064:3889-3908 | None:intergenic | 60.0% | |
| CCCCAAAAATTGACGCGGCG+CGG | - | tig0008064:3896-3915 | None:intergenic | 60.0% | |
| ! | CCGCGCCGCGTCAATTTTTG+GGG | + | tig0008064:3893-3912 | Msa1346020:intron | 60.0% |
| !! | CGCCGCGTCAATTTTTGGGG+TGG | + | tig0008064:3896-3915 | Msa1346020:intron | 60.0% |
| TGAGGTCCCCGATCCTGATG+AGG | + | tig0008064:4602-4621 | Msa1346020:CDS | 60.0% | |
| GTCCCCGATCCTGATGAGGT+GGG | + | tig0008064:4606-4625 | Msa1346020:intron | 60.0% | |
| ! | TGAGGGTGTGAGTGCCAAGC+AGG | + | tig0008064:4940-4959 | Msa1346020:CDS | 60.0% |
| CAGCCGTTGCTACTCCGTGA+TGG | - | tig0008064:4980-4999 | None:intergenic | 60.0% | |
| ! | GGCTGCAGAATGGAGGGTGT+GGG | + | tig0008064:4995-5014 | Msa1346020:CDS | 60.0% |
| GGTCTAACGCGGCGTGATCG+CGG | + | tig0008064:3442-3461 | Msa1346020:intron | 65.0% | |
| ATTGACGCGGCGCGGTAAGC+GGG | - | tig0008064:3888-3907 | None:intergenic | 65.0% | |
| GTCAAAGCGGAAACGCGGCG+CGG | - | tig0008064:3927-3946 | None:intergenic | 65.0% | |
| GGTCCCCGATCCTGATGAGG+TGG | + | tig0008064:4605-4624 | Msa1346020:intron | 65.0% | |
| CGGCTGCAGAATGGAGGGTG+TGG | + | tig0008064:4994-5013 | Msa1346020:CDS | 65.0% | |
| CGGTCGCGTTCTGACGCGCT+AGG | - | tig0008064:3478-3497 | None:intergenic | 70.0% | |
| ACGCGACCGAGTCGCGCGTT+AGG | + | tig0008064:3489-3508 | Msa1346020:intron | 70.0% | |
| ! | GCGGTAAGCGGGCGCGACGC+GGG | - | tig0008064:3877-3896 | None:intergenic | 80.0% |
| ! | CGCGGTAAGCGGGCGCGACG+CGG | - | tig0008064:3878-3897 | None:intergenic | 80.0% |
| ! | AGCGGAAACGCGGCGCGGCG+CGG | - | tig0008064:3922-3941 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0008064 | gene | 820 | 5539 | 820 | ID=Msa1346020;Name=Msa1346020 |
| tig0008064 | mRNA | 820 | 5539 | 820 | ID=Msa1346020-mRNA-1;Parent=Msa1346020;Name=Msa1346020-mRNA-1;_AED=0.13;_eAED=0.13;_QI=313|1|1|1|1|1|13|253|367 |
| tig0008064 | exon | 820 | 1213 | 820 | ID=Msa1346020-mRNA-1:exon:5298;Parent=Msa1346020-mRNA-1 |
| tig0008064 | exon | 1865 | 2054 | 1865 | ID=Msa1346020-mRNA-1:exon:5299;Parent=Msa1346020-mRNA-1 |
| tig0008064 | exon | 2156 | 2200 | 2156 | ID=Msa1346020-mRNA-1:exon:5300;Parent=Msa1346020-mRNA-1 |
| tig0008064 | exon | 2291 | 2376 | 2291 | ID=Msa1346020-mRNA-1:exon:5301;Parent=Msa1346020-mRNA-1 |
| tig0008064 | exon | 2525 | 2613 | 2525 | ID=Msa1346020-mRNA-1:exon:5302;Parent=Msa1346020-mRNA-1 |
| tig0008064 | exon | 2711 | 2765 | 2711 | ID=Msa1346020-mRNA-1:exon:5303;Parent=Msa1346020-mRNA-1 |
| tig0008064 | exon | 4154 | 4206 | 4154 | ID=Msa1346020-mRNA-1:exon:5304;Parent=Msa1346020-mRNA-1 |
| tig0008064 | exon | 4290 | 4340 | 4290 | ID=Msa1346020-mRNA-1:exon:5305;Parent=Msa1346020-mRNA-1 |
| tig0008064 | exon | 4425 | 4473 | 4425 | ID=Msa1346020-mRNA-1:exon:5306;Parent=Msa1346020-mRNA-1 |
| tig0008064 | exon | 4558 | 4623 | 4558 | ID=Msa1346020-mRNA-1:exon:5307;Parent=Msa1346020-mRNA-1 |
| tig0008064 | exon | 4701 | 4777 | 4701 | ID=Msa1346020-mRNA-1:exon:5308;Parent=Msa1346020-mRNA-1 |
| tig0008064 | exon | 4922 | 5120 | 4922 | ID=Msa1346020-mRNA-1:exon:5309;Parent=Msa1346020-mRNA-1 |
| tig0008064 | exon | 5224 | 5539 | 5224 | ID=Msa1346020-mRNA-1:exon:5310;Parent=Msa1346020-mRNA-1 |
| tig0008064 | five_prime_UTR | 820 | 1132 | 820 | ID=Msa1346020-mRNA-1:five_prime_utr;Parent=Msa1346020-mRNA-1 |
| tig0008064 | CDS | 1133 | 1213 | 1133 | ID=Msa1346020-mRNA-1:cds;Parent=Msa1346020-mRNA-1 |
| tig0008064 | CDS | 1865 | 2054 | 1865 | ID=Msa1346020-mRNA-1:cds;Parent=Msa1346020-mRNA-1 |
| tig0008064 | CDS | 2156 | 2200 | 2156 | ID=Msa1346020-mRNA-1:cds;Parent=Msa1346020-mRNA-1 |
| tig0008064 | CDS | 2291 | 2376 | 2291 | ID=Msa1346020-mRNA-1:cds;Parent=Msa1346020-mRNA-1 |
| tig0008064 | CDS | 2525 | 2613 | 2525 | ID=Msa1346020-mRNA-1:cds;Parent=Msa1346020-mRNA-1 |
| tig0008064 | CDS | 2711 | 2765 | 2711 | ID=Msa1346020-mRNA-1:cds;Parent=Msa1346020-mRNA-1 |
| tig0008064 | CDS | 4154 | 4206 | 4154 | ID=Msa1346020-mRNA-1:cds;Parent=Msa1346020-mRNA-1 |
| tig0008064 | CDS | 4290 | 4340 | 4290 | ID=Msa1346020-mRNA-1:cds;Parent=Msa1346020-mRNA-1 |
| tig0008064 | CDS | 4425 | 4473 | 4425 | ID=Msa1346020-mRNA-1:cds;Parent=Msa1346020-mRNA-1 |
| tig0008064 | CDS | 4558 | 4623 | 4558 | ID=Msa1346020-mRNA-1:cds;Parent=Msa1346020-mRNA-1 |
| tig0008064 | CDS | 4701 | 4777 | 4701 | ID=Msa1346020-mRNA-1:cds;Parent=Msa1346020-mRNA-1 |
| tig0008064 | CDS | 4922 | 5120 | 4922 | ID=Msa1346020-mRNA-1:cds;Parent=Msa1346020-mRNA-1 |
| tig0008064 | CDS | 5224 | 5286 | 5224 | ID=Msa1346020-mRNA-1:cds;Parent=Msa1346020-mRNA-1 |
| tig0008064 | three_prime_UTR | 5287 | 5539 | 5287 | ID=Msa1346020-mRNA-1:three_prime_utr;Parent=Msa1346020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
