Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1346090 | KEH17097.1 | 68.182 | 110 | 14 | 1 | 75 | 184 | 11 | 99 | 3.09e-41 | 147 |
| Msa1346090 | KEH17097.1 | 68.333 | 120 | 17 | 1 | 1 | 120 | 1 | 99 | 2.74e-47 | 162 |
| Msa1346090 | KEH17097.1 | 82.000 | 50 | 9 | 0 | 139 | 188 | 11 | 60 | 1.92e-19 | 91.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1346090 | G7ZUP9 | 68.182 | 110 | 14 | 1 | 75 | 184 | 11 | 99 | 1.48e-41 | 147 |
| Msa1346090 | G7ZUP9 | 68.333 | 120 | 17 | 1 | 1 | 120 | 1 | 99 | 1.31e-47 | 162 |
| Msa1346090 | G7ZUP9 | 82.000 | 50 | 9 | 0 | 139 | 188 | 11 | 60 | 9.16e-20 | 91.7 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1346090 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 36 sgRNAs with CRISPR-Local
Find 167 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGCTTTGAACGTCCATAAA+AGG | 0.292733 | tig0008185:-25994 | Msa1346090:CDS |
| GTGCTTTGAACGTCCATAAA+AGG | 0.292733 | tig0008185:-28159 | Msa1346090:CDS |
| GTGCTTTGAACGTCCATAAA+AGG | 0.292733 | tig0008185:-30283 | Msa1346090:CDS |
| ATATACTATAAACTGAAATA+TGG | 0.301575 | tig0008185:+25809 | Msa1346090:intergenic |
| ATATACTATAAACTGAAATA+TGG | 0.301575 | tig0008185:+27974 | Msa1346090:intergenic |
| ATATACTATAAACTGAAATA+TGG | 0.301575 | tig0008185:+30098 | Msa1346090:intergenic |
| TGTTCTCCAGTATATCTTCT+TGG | 0.311912 | tig0008185:+25834 | Msa1346090:intergenic |
| TGTTCTCCAGTATATCTTCT+TGG | 0.311912 | tig0008185:+27999 | Msa1346090:intergenic |
| TGTTCTCCAGTATATCTTCT+TGG | 0.311912 | tig0008185:+30123 | Msa1346090:intergenic |
| AATTCTCCAAGAAGATATAC+TGG | 0.369151 | tig0008185:-25840 | Msa1346090:CDS |
| AATTCTCCAAGAAGATATAC+TGG | 0.369151 | tig0008185:-28005 | Msa1346090:CDS |
| AATTCTCCAAGAAGATATAC+TGG | 0.369151 | tig0008185:-30129 | Msa1346090:CDS |
| TCCCAAGTCCTTCGAAAGTA+GGG | 0.449688 | tig0008185:-26017 | Msa1346090:intron |
| TCCCAAGTCCTTCGAAAGTA+GGG | 0.449688 | tig0008185:-28182 | Msa1346090:intron |
| TCCCAAGTCCTTCGAAAGTA+GGG | 0.449688 | tig0008185:-30306 | Msa1346090:CDS |
| GTGGTTGACATGTCTTCATA+TGG | 0.455172 | tig0008185:+25900 | Msa1346090:intergenic |
| GTGGTTGACATGTCTTCATA+TGG | 0.455172 | tig0008185:+28065 | Msa1346090:intergenic |
| GTGGTTGACATGTCTTCATA+TGG | 0.455172 | tig0008185:+30189 | Msa1346090:intergenic |
| ACCCCTACTTTCGAAGGACT+TGG | 0.483526 | tig0008185:+30304 | Msa1346090:intergenic |
| CCCCTACTTTCGAAGGACTT+GGG | 0.544991 | tig0008185:+30305 | Msa1346090:intergenic |
| GTCCCAAGTCCTTCGAAAGT+AGG | 0.556450 | tig0008185:-26018 | Msa1346090:intron |
| GTCCCAAGTCCTTCGAAAGT+AGG | 0.556450 | tig0008185:-28183 | Msa1346090:intron |
| GTCCCAAGTCCTTCGAAAGT+AGG | 0.556450 | tig0008185:-30307 | Msa1346090:CDS |
| TTATGTACTTGCGGCTTCTG+TGG | 0.572456 | tig0008185:+25881 | Msa1346090:intergenic |
| TTATGTACTTGCGGCTTCTG+TGG | 0.572456 | tig0008185:+28046 | Msa1346090:intergenic |
| TTATGTACTTGCGGCTTCTG+TGG | 0.572456 | tig0008185:+30170 | Msa1346090:intergenic |
| CAAAGCACCCCTACTTTCGA+AGG | 0.573103 | tig0008185:+26009 | Msa1346090:intergenic |
| CAAAGCACCCCTACTTTCGA+AGG | 0.573103 | tig0008185:+28174 | Msa1346090:intergenic |
| CAAAGCACCCCTACTTTCGA+AGG | 0.573103 | tig0008185:+30298 | Msa1346090:intergenic |
| CCCAAGTCCTTCGAAAGTAG+GGG | 0.658544 | tig0008185:-26016 | Msa1346090:intron |
| CCCAAGTCCTTCGAAAGTAG+GGG | 0.658544 | tig0008185:-28181 | Msa1346090:intron |
| CCCAAGTCCTTCGAAAGTAG+GGG | 0.658544 | tig0008185:-30305 | Msa1346090:CDS |
| TGGGACAATCAAAGCAAGCG+TGG | 0.684170 | tig0008185:+30324 | Msa1346090:intergenic |
| AAAACACGTTGCGATAGATG+TGG | 0.685090 | tig0008185:-25956 | Msa1346090:CDS |
| AAAACACGTTGCGATAGATG+TGG | 0.685090 | tig0008185:-28121 | Msa1346090:CDS |
| AAAACACGTTGCGATAGATG+TGG | 0.685090 | tig0008185:-30245 | Msa1346090:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATATATATTTAATAA+GGG | + | tig0008185:29492-29511 | Msa1346090:intergenic | 0.0% |
| !! | ATATATATATATATTTAATA+AGG | + | tig0008185:29491-29510 | Msa1346090:intergenic | 0.0% |
| !! | TATATATATATATTTAATAA+GGG | + | tig0008185:29492-29511 | Msa1346090:intergenic | 0.0% |
| !! | ATATATATATATATTTAATA+AGG | + | tig0008185:29491-29510 | Msa1346090:intergenic | 0.0% |
| !!! | TTAATTTTAGTTAAATTTCT+TGG | - | tig0008185:26144-26163 | Msa1346090:intron | 10.0% |
| !! | ATAAAATTATAAACTCAAAA+TGG | - | tig0008185:26478-26497 | Msa1346090:intron | 10.0% |
| !!! | TTTCTATTTAGAATATTTTT+AGG | - | tig0008185:26657-26676 | Msa1346090:intron | 10.0% |
| !!! | TCTTTATTTATTTTAAATTG+AGG | - | tig0008185:26686-26705 | Msa1346090:intron | 10.0% |
| !!! | CTTTATTTATTTTAAATTGA+GGG | - | tig0008185:26687-26706 | Msa1346090:intron | 10.0% |
| !! | AATTCTATTAAATCATATTT+AGG | - | tig0008185:27436-27455 | Msa1346090:intron | 10.0% |
| !! | ATTCTATTAAATCATATTTA+GGG | - | tig0008185:27437-27456 | Msa1346090:intron | 10.0% |
| !!! | TTAATTTTAGTTAAATTTCT+TGG | - | tig0008185:26144-26163 | Msa1346090:intron | 10.0% |
| !! | ATAAAATTATAAACTCAAAA+TGG | - | tig0008185:26478-26497 | Msa1346090:intron | 10.0% |
| !!! | TTTCTATTTAGAATATTTTT+AGG | - | tig0008185:26657-26676 | Msa1346090:intron | 10.0% |
| !!! | TCTTTATTTATTTTAAATTG+AGG | - | tig0008185:26686-26705 | Msa1346090:intron | 10.0% |
| !!! | CTTTATTTATTTTAAATTGA+GGG | - | tig0008185:26687-26706 | Msa1346090:intron | 10.0% |
| !! | TTATGTATAAAAAAAAATGA+GGG | - | tig0008185:28874-28893 | Msa1346090:intron | 10.0% |
| !! | AATTCTATTAAATCATATTT+AGG | - | tig0008185:27436-27455 | Msa1346090:intron | 10.0% |
| !! | ATTCTATTAAATCATATTTA+GGG | - | tig0008185:27437-27456 | Msa1346090:intron | 10.0% |
| !! | ATATACTATAAACTGAAATA+TGG | + | tig0008185:25995-26014 | Msa1346090:intergenic | 15.0% |
| !!! | TATGAGTATTTTTTTCAAAA+GGG | + | tig0008185:26591-26610 | Msa1346090:intergenic | 15.0% |
| !!! | TTATGAGTATTTTTTTCAAA+AGG | + | tig0008185:26592-26611 | Msa1346090:intergenic | 15.0% |
| !! | TGTTATGTATAAAAAAAATG+AGG | - | tig0008185:26748-26767 | Msa1346090:intron | 15.0% |
| !! | GTTATGTATAAAAAAAATGA+GGG | - | tig0008185:26749-26768 | Msa1346090:intron | 15.0% |
| !! | ATATACTATAAACTGAAATA+TGG | + | tig0008185:25995-26014 | Msa1346090:intergenic | 15.0% |
| !!! | TATGAGTATTTTTTTCAAAA+GGG | + | tig0008185:26591-26610 | Msa1346090:intergenic | 15.0% |
| !!! | TTATGAGTATTTTTTTCAAA+AGG | + | tig0008185:26592-26611 | Msa1346090:intergenic | 15.0% |
| !! | GTTATGTATAAAAAAAAATG+AGG | - | tig0008185:28873-28892 | Msa1346090:intron | 15.0% |
| !! | ATATACTATAAACTGAAATA+TGG | + | tig0008185:25995-26014 | Msa1346090:intergenic | 15.0% |
| !! | TATTATAATTCTTGCATGTA+TGG | - | tig0008185:26100-26119 | Msa1346090:intron | 20.0% |
| !!! | TTTTAATTATGTATGAGAGT+AGG | - | tig0008185:26186-26205 | Msa1346090:intron | 20.0% |
| !! | TGTGAATAATAAACTACAAA+AGG | + | tig0008185:26288-26307 | Msa1346090:intergenic | 20.0% |
| !!! | TATATGTGATGCTAAATTTT+AGG | + | tig0008185:27308-27327 | Msa1346090:intergenic | 20.0% |
| !! | TATTATAATTCTTGCATGTA+TGG | - | tig0008185:26100-26119 | Msa1346090:intron | 20.0% |
| !!! | TTTTAATTATGTATGAGAGT+AGG | - | tig0008185:26186-26205 | Msa1346090:intron | 20.0% |
| !! | TGTGAATAATAAACTACAAA+AGG | + | tig0008185:26288-26307 | Msa1346090:intergenic | 20.0% |
| !!! | TATATGTGATGCTAAATTTT+AGG | + | tig0008185:27308-27327 | Msa1346090:intergenic | 20.0% |
| ! | AGAATTCTTCAAATTCATTG+AGG | + | tig0008185:25947-25966 | Msa1346090:intergenic | 25.0% |
| !! | TTTGTCGACTATATATTCTT+AGG | - | tig0008185:26063-26082 | Msa1346090:intron | 25.0% |
| ! | AGGATGAAATATTCTATTAC+AGG | - | tig0008185:26206-26225 | Msa1346090:intron | 25.0% |
| ! | AACATAATTAAAAGCTTACG+AGG | - | tig0008185:26389-26408 | Msa1346090:intron | 25.0% |
| ! | GCAACAAAAACTATGAAATA+AGG | - | tig0008185:27679-27698 | Msa1346090:intron | 25.0% |
| ! | TTATTCAACAGTATATCCAT+GGG | + | tig0008185:27741-27760 | Msa1346090:intergenic | 25.0% |
| ! | ATTATTCAACAGTATATCCA+TGG | + | tig0008185:27742-27761 | Msa1346090:intergenic | 25.0% |
| ! | AGAATTCTTCAAATTCATTG+AGG | + | tig0008185:25947-25966 | Msa1346090:intergenic | 25.0% |
| !! | TTTGTCGACTATATATTCTT+AGG | - | tig0008185:26063-26082 | Msa1346090:intron | 25.0% |
| ! | AGGATGAAATATTCTATTAC+AGG | - | tig0008185:26206-26225 | Msa1346090:intron | 25.0% |
| ! | AACATAATTAAAAGCTTACG+AGG | - | tig0008185:26389-26408 | Msa1346090:intron | 25.0% |
| ! | GCAACAAAAACTATGAAATA+AGG | - | tig0008185:27679-27698 | Msa1346090:intron | 25.0% |
| ! | TTATTCAACAGTATATCCAT+GGG | + | tig0008185:27741-27760 | Msa1346090:intergenic | 25.0% |
| ! | ATTATTCAACAGTATATCCA+TGG | + | tig0008185:27742-27761 | Msa1346090:intergenic | 25.0% |
| ! | AGAATTCTTCAAATTCATTG+AGG | + | tig0008185:25947-25966 | Msa1346090:intergenic | 25.0% |
| ! | CTTCACATTCAAACCTTTTA+TGG | + | tig0008185:25823-25842 | Msa1346090:intergenic | 30.0% |
| AATTCTCCAAGAAGATATAC+TGG | - | tig0008185:25961-25980 | Msa1346090:CDS | 30.0% | |
| TAGTTTATTATTCACAGCTC+CGG | - | tig0008185:26292-26311 | Msa1346090:intron | 30.0% | |
| ATTGACAGCATATTAGAGTA+GGG | + | tig0008185:26914-26933 | Msa1346090:intergenic | 30.0% | |
| AATTGACAGCATATTAGAGT+AGG | + | tig0008185:26915-26934 | Msa1346090:intergenic | 30.0% | |
| AATTCCATTGTCTACTTGTA+GGG | - | tig0008185:27238-27257 | Msa1346090:intron | 30.0% | |
| !!! | AGCTAAGTTTTGGGTTTAAA+TGG | + | tig0008185:27267-27286 | Msa1346090:intergenic | 30.0% |
| !! | TGTGATGCTAAATTTTAGGT+GGG | + | tig0008185:27304-27323 | Msa1346090:intergenic | 30.0% |
| ! | ATGTGATGCTAAATTTTAGG+TGG | + | tig0008185:27305-27324 | Msa1346090:intergenic | 30.0% |
| !! | TAAATTTTGTTGTGAACCCA+TGG | - | tig0008185:27722-27741 | Msa1346090:intron | 30.0% |
| ! | CTTCACATTCAAACCTTTTA+TGG | + | tig0008185:25823-25842 | Msa1346090:intergenic | 30.0% |
| AATTCTCCAAGAAGATATAC+TGG | - | tig0008185:25961-25980 | Msa1346090:CDS | 30.0% | |
| TAGTTTATTATTCACAGCTC+CGG | - | tig0008185:26292-26311 | Msa1346090:intron | 30.0% | |
| ATTGACAGCATATTAGAGTA+GGG | + | tig0008185:26914-26933 | Msa1346090:intergenic | 30.0% | |
| AATTGACAGCATATTAGAGT+AGG | + | tig0008185:26915-26934 | Msa1346090:intergenic | 30.0% | |
| AATTCCATTGTCTACTTGTA+GGG | - | tig0008185:27238-27257 | Msa1346090:intron | 30.0% | |
| !!! | AGCTAAGTTTTGGGTTTAAA+TGG | + | tig0008185:27267-27286 | Msa1346090:intergenic | 30.0% |
| !! | TGTGATGCTAAATTTTAGGT+GGG | + | tig0008185:27304-27323 | Msa1346090:intergenic | 30.0% |
| ! | ATGTGATGCTAAATTTTAGG+TGG | + | tig0008185:27305-27324 | Msa1346090:intergenic | 30.0% |
| !! | TAAATTTTGTTGTGAACCCA+TGG | - | tig0008185:27722-27741 | Msa1346090:intron | 30.0% |
| ! | CTTCACATTCAAACCTTTTA+TGG | + | tig0008185:25823-25842 | Msa1346090:intergenic | 30.0% |
| AATTCTCCAAGAAGATATAC+TGG | - | tig0008185:25961-25980 | Msa1346090:CDS | 30.0% | |
| CATTGAGGATTATGTACTTG+CGG | + | tig0008185:25932-25951 | Msa1346090:intergenic | 35.0% | |
| TGTTCTCCAGTATATCTTCT+TGG | + | tig0008185:25970-25989 | Msa1346090:intergenic | 35.0% | |
| !!! | TTTGGATGTCATTTTGCTCT+TGG | + | tig0008185:26866-26885 | Msa1346090:intergenic | 35.0% |
| ! | GTAGTTGGACACAATTCTTT+TGG | + | tig0008185:26884-26903 | Msa1346090:intergenic | 35.0% |
| ! | AAATTAGTTGACTCTCGAAC+TGG | + | tig0008185:27209-27228 | Msa1346090:intergenic | 35.0% |
| CTACAAGTAGACAATGGAAT+TGG | + | tig0008185:27239-27258 | Msa1346090:intergenic | 35.0% | |
| CAATTCCATTGTCTACTTGT+AGG | - | tig0008185:27237-27256 | Msa1346090:intron | 35.0% | |
| ! | TCCATACAGAGCTAAGTTTT+GGG | + | tig0008185:27276-27295 | Msa1346090:intergenic | 35.0% |
| AAATAGTGCATTAGAGTGTG+AGG | + | tig0008185:27803-27822 | Msa1346090:intergenic | 35.0% | |
| CATTGAGGATTATGTACTTG+CGG | + | tig0008185:25932-25951 | Msa1346090:intergenic | 35.0% | |
| TGTTCTCCAGTATATCTTCT+TGG | + | tig0008185:25970-25989 | Msa1346090:intergenic | 35.0% | |
| !!! | TTTGGATGTCATTTTGCTCT+TGG | + | tig0008185:26866-26885 | Msa1346090:intergenic | 35.0% |
| ! | GTAGTTGGACACAATTCTTT+TGG | + | tig0008185:26884-26903 | Msa1346090:intergenic | 35.0% |
| ! | AAATTAGTTGACTCTCGAAC+TGG | + | tig0008185:27209-27228 | Msa1346090:intergenic | 35.0% |
| CTACAAGTAGACAATGGAAT+TGG | + | tig0008185:27239-27258 | Msa1346090:intergenic | 35.0% | |
| CAATTCCATTGTCTACTTGT+AGG | - | tig0008185:27237-27256 | Msa1346090:intron | 35.0% | |
| ! | TCCATACAGAGCTAAGTTTT+GGG | + | tig0008185:27276-27295 | Msa1346090:intergenic | 35.0% |
| AAATAGTGCATTAGAGTGTG+AGG | + | tig0008185:27803-27822 | Msa1346090:intergenic | 35.0% | |
| CATTGAGGATTATGTACTTG+CGG | + | tig0008185:25932-25951 | Msa1346090:intergenic | 35.0% | |
| TGTTCTCCAGTATATCTTCT+TGG | + | tig0008185:25970-25989 | Msa1346090:intergenic | 35.0% | |
| ! | GTGCTTTGAACGTCCATAAA+AGG | - | tig0008185:25807-25826 | Msa1346090:CDS | 40.0% |
| AAAACACGTTGCGATAGATG+TGG | - | tig0008185:25845-25864 | Msa1346090:intron | 40.0% | |
| GTGGTTGACATGTCTTCATA+TGG | + | tig0008185:25904-25923 | Msa1346090:intergenic | 40.0% | |
| GAAGCATGAACGAACTTCAT+AGG | - | tig0008185:26362-26381 | Msa1346090:intron | 40.0% | |
| ACGAGGATTAAAAGCTTACG+AGG | - | tig0008185:26406-26425 | Msa1346090:intron | 40.0% | |
| GAAAACCATTGAGTCTGCTA+GGG | + | tig0008185:26449-26468 | Msa1346090:intergenic | 40.0% | |
| TGAAAACCATTGAGTCTGCT+AGG | + | tig0008185:26450-26469 | Msa1346090:intergenic | 40.0% | |
| AGAATTGTGTCCAACTACGT+TGG | - | tig0008185:26886-26905 | Msa1346090:intron | 40.0% | |
| GAATTGTGTCCAACTACGTT+GGG | - | tig0008185:26887-26906 | Msa1346090:intron | 40.0% | |
| !! | ACCCAAAACTTAGCTCTGTA+TGG | - | tig0008185:27272-27291 | Msa1346090:intron | 40.0% |
| ! | GTCCATACAGAGCTAAGTTT+TGG | + | tig0008185:27277-27296 | Msa1346090:intergenic | 40.0% |
| GAACATCGTGGATGATTCTT+AGG | + | tig0008185:27871-27890 | Msa1346090:intergenic | 40.0% | |
| ! | GTGCTTTGAACGTCCATAAA+AGG | - | tig0008185:25807-25826 | Msa1346090:CDS | 40.0% |
| AAAACACGTTGCGATAGATG+TGG | - | tig0008185:25845-25864 | Msa1346090:intron | 40.0% | |
| GTGGTTGACATGTCTTCATA+TGG | + | tig0008185:25904-25923 | Msa1346090:intergenic | 40.0% | |
| GAAGCATGAACGAACTTCAT+AGG | - | tig0008185:26362-26381 | Msa1346090:intron | 40.0% | |
| ACGAGGATTAAAAGCTTACG+AGG | - | tig0008185:26406-26425 | Msa1346090:intron | 40.0% | |
| GAAAACCATTGAGTCTGCTA+GGG | + | tig0008185:26449-26468 | Msa1346090:intergenic | 40.0% | |
| TGAAAACCATTGAGTCTGCT+AGG | + | tig0008185:26450-26469 | Msa1346090:intergenic | 40.0% | |
| AGAATTGTGTCCAACTACGT+TGG | - | tig0008185:26886-26905 | Msa1346090:intron | 40.0% | |
| GAATTGTGTCCAACTACGTT+GGG | - | tig0008185:26887-26906 | Msa1346090:intron | 40.0% | |
| !! | ACCCAAAACTTAGCTCTGTA+TGG | - | tig0008185:27272-27291 | Msa1346090:intron | 40.0% |
| ! | GTCCATACAGAGCTAAGTTT+TGG | + | tig0008185:27277-27296 | Msa1346090:intergenic | 40.0% |
| GAACATCGTGGATGATTCTT+AGG | + | tig0008185:27871-27890 | Msa1346090:intergenic | 40.0% | |
| ! | GTGCTTTGAACGTCCATAAA+AGG | - | tig0008185:25807-25826 | Msa1346090:CDS | 40.0% |
| AAAACACGTTGCGATAGATG+TGG | - | tig0008185:25845-25864 | Msa1346090:intron | 40.0% | |
| GTGGTTGACATGTCTTCATA+TGG | + | tig0008185:25904-25923 | Msa1346090:intergenic | 40.0% | |
| TCCCAAGTCCTTCGAAAGTA+GGG | - | tig0008185:25784-25803 | Msa1346090:CDS | 45.0% | |
| TTATGTACTTGCGGCTTCTG+TGG | + | tig0008185:25923-25942 | Msa1346090:intergenic | 45.0% | |
| CCGAATACATCACACATGAC+CGG | + | tig0008185:26314-26333 | Msa1346090:intergenic | 45.0% | |
| CCGGTCATGTGTGATGTATT+CGG | - | tig0008185:26311-26330 | Msa1346090:intron | 45.0% | |
| ACAAACCCTAGCAGACTCAA+TGG | - | tig0008185:26441-26460 | Msa1346090:intron | 45.0% | |
| GAGACCCTACAAGTAGACAA+TGG | + | tig0008185:27245-27264 | Msa1346090:intergenic | 45.0% | |
| AGTGCATTAGAGTGTGAGGT+AGG | + | tig0008185:27799-27818 | Msa1346090:intergenic | 45.0% | |
| AAAGCAAGTGTGGAACATCG+TGG | + | tig0008185:27883-27902 | Msa1346090:intergenic | 45.0% | |
| TGGGACAATCAAAGCAAGTG+TGG | + | tig0008185:27893-27912 | Msa1346090:intergenic | 45.0% | |
| TCCCAAGTCCTTCGAAAGTA+GGG | - | tig0008185:25784-25803 | Msa1346090:CDS | 45.0% | |
| TTATGTACTTGCGGCTTCTG+TGG | + | tig0008185:25923-25942 | Msa1346090:intergenic | 45.0% | |
| CCGAATACATCACACATGAC+CGG | + | tig0008185:26314-26333 | Msa1346090:intergenic | 45.0% | |
| CCGGTCATGTGTGATGTATT+CGG | - | tig0008185:26311-26330 | Msa1346090:intron | 45.0% | |
| ACAAACCCTAGCAGACTCAA+TGG | - | tig0008185:26441-26460 | Msa1346090:intron | 45.0% | |
| GAGACCCTACAAGTAGACAA+TGG | + | tig0008185:27245-27264 | Msa1346090:intergenic | 45.0% | |
| AGTGCATTAGAGTGTGAGGT+AGG | + | tig0008185:27799-27818 | Msa1346090:intergenic | 45.0% | |
| AAAGCAAGTGTGGAACATCG+TGG | + | tig0008185:27883-27902 | Msa1346090:intergenic | 45.0% | |
| TGGGACAATCAAAGCAAGTG+TGG | + | tig0008185:27893-27912 | Msa1346090:intergenic | 45.0% | |
| TCCCAAGTCCTTCGAAAGTA+GGG | - | tig0008185:25784-25803 | Msa1346090:CDS | 45.0% | |
| TTATGTACTTGCGGCTTCTG+TGG | + | tig0008185:25923-25942 | Msa1346090:intergenic | 45.0% | |
| !!! | TTATTAATTGAATATTTTAA+TGG | - | tig0008185:26510-26529 | Msa1346090:intron | 5.0% |
| !! | TCATAAATATTATTAAAAAA+AGG | - | tig0008185:26937-26956 | Msa1346090:intron | 5.0% |
| !!! | ATTTATTTATTTTTATTTGA+AGG | - | tig0008185:27028-27047 | Msa1346090:intron | 5.0% |
| !!! | TTTTTTTTAAAAAAAAAACT+TGG | - | tig0008185:27180-27199 | Msa1346090:intron | 5.0% |
| !!! | TTATTAATTGAATATTTTAA+TGG | - | tig0008185:26510-26529 | Msa1346090:intron | 5.0% |
| !! | TCATAAATATTATTAAAAAA+AGG | - | tig0008185:26937-26956 | Msa1346090:intron | 5.0% |
| !!! | ATTTATTTATTTTTATTTGA+AGG | - | tig0008185:27028-27047 | Msa1346090:intron | 5.0% |
| !!! | TTTTTTTTAAAAAAAAAACT+TGG | - | tig0008185:27180-27199 | Msa1346090:intron | 5.0% |
| TGGGACAATCAAAGCAAGCG+TGG | + | tig0008185:25769-25788 | None:intergenic | 50.0% | |
| GTCCCAAGTCCTTCGAAAGT+AGG | - | tig0008185:25783-25802 | Msa1346090:CDS | 50.0% | |
| CCCCTACTTTCGAAGGACTT+GGG | + | tig0008185:25788-25807 | Msa1346090:intergenic | 50.0% | |
| CCCAAGTCCTTCGAAAGTAG+GGG | - | tig0008185:25785-25804 | Msa1346090:CDS | 50.0% | |
| ACCCCTACTTTCGAAGGACT+TGG | + | tig0008185:25789-25808 | Msa1346090:intergenic | 50.0% | |
| ! | CAAAGCACCCCTACTTTCGA+AGG | + | tig0008185:25795-25814 | Msa1346090:intergenic | 50.0% |
| GTCCCAAGTCCTTCGAAAGT+AGG | - | tig0008185:25783-25802 | Msa1346090:CDS | 50.0% | |
| CCCCTACTTTCGAAGGACTT+GGG | + | tig0008185:25788-25807 | Msa1346090:intergenic | 50.0% | |
| CCCAAGTCCTTCGAAAGTAG+GGG | - | tig0008185:25785-25804 | Msa1346090:CDS | 50.0% | |
| ACCCCTACTTTCGAAGGACT+TGG | + | tig0008185:25789-25808 | Msa1346090:intergenic | 50.0% | |
| ! | CAAAGCACCCCTACTTTCGA+AGG | + | tig0008185:25795-25814 | Msa1346090:intergenic | 50.0% |
| GTCCCAAGTCCTTCGAAAGT+AGG | - | tig0008185:25783-25802 | Msa1346090:CDS | 50.0% | |
| CCCCTACTTTCGAAGGACTT+GGG | + | tig0008185:25788-25807 | Msa1346090:intergenic | 50.0% | |
| CCCAAGTCCTTCGAAAGTAG+GGG | - | tig0008185:25785-25804 | Msa1346090:CDS | 50.0% | |
| ACCCCTACTTTCGAAGGACT+TGG | + | tig0008185:25789-25808 | Msa1346090:intergenic | 50.0% | |
| ! | CAAAGCACCCCTACTTTCGA+AGG | + | tig0008185:25795-25814 | Msa1346090:intergenic | 50.0% |
| GAGTAGGGTCCCAACGTAGT+TGG | + | tig0008185:26899-26918 | Msa1346090:intergenic | 55.0% | |
| GAGTAGGGTCCCAACGTAGT+TGG | + | tig0008185:26899-26918 | Msa1346090:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0008185 | gene | 25761 | 30351 | 25761 | ID=Msa1346090;Name=Msa1346090 |
| tig0008185 | mRNA | 25761 | 30351 | 25761 | ID=Msa1346090-mRNA-1;Parent=Msa1346090;Name=Msa1346090-mRNA-1;_AED=0.14;_eAED=0.37;_QI=0|0|0|1|0|0|6|0|219 |
| tig0008185 | exon | 30178 | 30351 | 30178 | ID=Msa1346090-mRNA-1:exon:5346;Parent=Msa1346090-mRNA-1 |
| tig0008185 | exon | 30104 | 30151 | 30104 | ID=Msa1346090-mRNA-1:exon:5345;Parent=Msa1346090-mRNA-1 |
| tig0008185 | exon | 28054 | 28197 | 28054 | ID=Msa1346090-mRNA-1:exon:5344;Parent=Msa1346090-mRNA-1 |
| tig0008185 | exon | 27980 | 28027 | 27980 | ID=Msa1346090-mRNA-1:exon:5343;Parent=Msa1346090-mRNA-1 |
| tig0008185 | exon | 25889 | 26032 | 25889 | ID=Msa1346090-mRNA-1:exon:5342;Parent=Msa1346090-mRNA-1 |
| tig0008185 | exon | 25761 | 25862 | 25761 | ID=Msa1346090-mRNA-1:exon:5341;Parent=Msa1346090-mRNA-1 |
| tig0008185 | CDS | 30178 | 30351 | 30178 | ID=Msa1346090-mRNA-1:cds;Parent=Msa1346090-mRNA-1 |
| tig0008185 | CDS | 30104 | 30151 | 30104 | ID=Msa1346090-mRNA-1:cds;Parent=Msa1346090-mRNA-1 |
| tig0008185 | CDS | 28054 | 28197 | 28054 | ID=Msa1346090-mRNA-1:cds;Parent=Msa1346090-mRNA-1 |
| tig0008185 | CDS | 27980 | 28027 | 27980 | ID=Msa1346090-mRNA-1:cds;Parent=Msa1346090-mRNA-1 |
| tig0008185 | CDS | 25889 | 26032 | 25889 | ID=Msa1346090-mRNA-1:cds;Parent=Msa1346090-mRNA-1 |
| tig0008185 | CDS | 25761 | 25862 | 25761 | ID=Msa1346090-mRNA-1:cds;Parent=Msa1346090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
