AlfalfaGEDB | Msa1346520

M. sativa cultivar zhongmu-4 / Msa1346520

KEGG: K11644
GO: GO:0000118 GO:0000122 GO:0000785 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016575 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0035601 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0098732 GO:1901564 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
PFAM: PF02671.24

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1346520	KEH43987.1	91.463	164	14	0	1	164	1	164	1.15e-106	314

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1346520	sp\|O48686\|SNL3_ARATH	42.581	155	76	4	13	157	11	162	1.41e-29	118
Msa1346520	sp\|O48686\|SNL3_ARATH	55.882	68	30	0	96	163	15	82	9.17e-17	81.3

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1346520	A0A072VQC1	91.463	164	14	0	1	164	1	164	5.51e-107	314

TFs/TRs:

Gene ID	Type	Classification
Msa1346520	TR	Others

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1346520	MtrunA17_Chr1g0206771	91.463	164	14	0	1	164	1	164	1.06e-110	314
Msa1346520	MtrunA17_Chr1g0206781	49.600	125	44	1	6	130	1	106	5.78e-33	114
Msa1346520	MtrunA17_Chr1g0206781	60.241	83	33	0	94	176	10	92	6.08e-27	99.4
Msa1346520	MtrunA17_Chr3g0077911	45.806	155	74	3	13	160	5	156	2.18e-32	114
Msa1346520	MtrunA17_Chr3g0077911	47.436	78	37	2	96	172	9	83	2.53e-12	62.4
Msa1346520	MtrunA17_Chr5g0415031	44.737	152	77	2	13	157	40	191	6.89e-32	121
Msa1346520	MtrunA17_Chr5g0415031	51.351	74	36	0	96	169	44	117	7.56e-17	78.2
Msa1346520	MtrunA17_Chr3g0077861	47.742	155	71	4	13	160	5	156	1.04e-31	113
Msa1346520	MtrunA17_Chr1g0205821	38.372	172	98	2	5	168	2	173	4.33e-31	111
Msa1346520	MtrunA17_Chr1g0205821	42.308	78	45	0	92	169	10	87	5.33e-12	61.6
Msa1346520	MtrunA17_Chr3g0077891	40.476	168	75	3	17	165	9	170	2.36e-30	109
Msa1346520	MtrunA17_Chr3g0077891	51.389	72	34	1	9	79	92	163	7.51e-16	72.0
Msa1346520	MtrunA17_Chr1g0205831	38.125	160	90	2	16	174	2	153	5.47e-30	108
Msa1346520	MtrunA17_Chr3g0077941	41.104	163	84	2	13	163	5	167	1.28e-29	107
Msa1346520	MtrunA17_Chr8g0364231	41.509	159	86	2	6	157	32	190	1.69e-29	114
Msa1346520	MtrunA17_Chr8g0364231	55.405	74	33	0	96	169	43	116	5.13e-19	84.3
Msa1346520	MtrunA17_Chr6g0452001	42.208	154	78	3	13	157	60	211	6.95e-29	112
Msa1346520	MtrunA17_Chr6g0452001	50.667	75	37	0	96	170	64	138	4.25e-17	79.0
Msa1346520	MtrunA17_Chr4g0075861	41.139	158	79	2	15	163	88	240	3.31e-28	108
Msa1346520	MtrunA17_Chr4g0075861	42.667	150	78	3	17	163	13	157	5.09e-24	97.4
Msa1346520	MtrunA17_Chr4g0075861	43.038	79	42	1	91	169	8	83	8.07e-11	60.1
Msa1346520	MtrunA17_Chr4g0075971	40.506	158	80	2	15	163	88	240	4.16e-27	107
Msa1346520	MtrunA17_Chr4g0075971	42.857	154	76	3	15	163	11	157	9.23e-25	100
Msa1346520	MtrunA17_Chr4g0075971	43.038	79	42	1	91	169	8	83	2.41e-11	62.0
Msa1346520	MtrunA17_Chr3g0077881	40.854	164	84	4	13	163	5	168	7.30e-27	100
Msa1346520	MtrunA17_Chr3g0077881	46.988	83	42	2	96	176	9	91	6.20e-13	64.3
Msa1346520	MtrunA17_Chr6g0452021	41.333	150	83	1	13	157	40	189	3.61e-26	104
Msa1346520	MtrunA17_Chr1g0209201	44.961	129	64	3	19	145	19	142	1.16e-25	96.7
Msa1346520	MtrunA17_Chr1g0209201	53.731	67	30	1	98	164	19	84	2.38e-17	75.1
Msa1346520	MtrunA17_Chr1g0205861	50.617	81	40	0	1	81	1	81	1.29e-20	82.8
Msa1346520	MtrunA17_Chr1g0205861	43.820	89	49	1	92	180	13	100	3.43e-17	73.9
Msa1346520	MtrunA17_Chr7g0218891	36.129	155	90	3	17	162	100	254	2.37e-20	85.9
Msa1346520	MtrunA17_Chr7g0218891	35.088	171	99	5	1	162	1	168	2.69e-19	83.2
Msa1346520	MtrunA17_Chr7g0256011	48.193	83	43	0	1	83	1	83	2.55e-19	79.7
Msa1346520	MtrunA17_Chr1g0205811	52.055	73	35	0	16	88	14	86	1.07e-18	78.2
Msa1346520	MtrunA17_Chr1g0205811	44.792	96	53	0	95	190	14	109	5.14e-18	76.3
Msa1346520	MtrunA17_Chr8g0364021	48.611	72	37	0	9	80	37	108	3.23e-15	71.6
Msa1346520	MtrunA17_Chr8g0364021	50.746	67	33	0	96	162	45	111	2.41e-11	60.8
Msa1346520	MtrunA17_Chr1g0205801	43.836	73	41	0	16	88	12	84	5.90e-14	65.5
Msa1346520	MtrunA17_Chr1g0205801	45.000	80	44	0	95	174	12	91	1.02e-12	62.0
Msa1346520	MtrunA17_Chr2g0328701	41.584	101	56	1	69	169	3	100	9.11e-14	65.1
Msa1346520	MtrunA17_Chr2g0328701	41.584	101	51	3	17	114	30	125	9.36e-13	62.4
Msa1346520	MtrunA17_Chr7g0218911	49.180	61	31	0	20	80	2	62	1.05e-13	65.1
Msa1346520	MtrunA17_Chr3g0077811	46.479	71	37	1	93	162	11	81	3.41e-12	60.8

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1346520	AT1G24190.3	42.581	155	76	4	13	157	11	162	1.13e-30	118
Msa1346520	AT1G24190.3	55.882	68	30	0	96	163	15	82	8.32e-18	81.3
Msa1346520	AT1G24190.2	42.581	155	76	4	13	157	11	162	1.33e-30	118
Msa1346520	AT1G24190.2	55.882	68	30	0	96	163	15	82	9.32e-18	81.3
Msa1346520	AT1G24190.1	42.581	155	76	4	13	157	11	162	1.43e-30	118
Msa1346520	AT1G24190.1	55.882	68	30	0	96	163	15	82	9.32e-18	81.3
Msa1346520	AT3G01320.2	42.384	151	81	2	13	157	54	204	2.90e-30	117
Msa1346520	AT3G01320.2	55.405	74	33	0	96	169	58	131	2.38e-18	82.8
Msa1346520	AT3G01320.1	42.384	151	81	2	13	157	54	204	3.20e-30	117
Msa1346520	AT3G01320.1	55.405	74	33	0	96	169	58	131	2.45e-18	82.8
Msa1346520	AT5G15020.1	42.105	152	79	2	13	157	49	198	1.07e-29	115
Msa1346520	AT5G15020.1	53.521	71	33	0	96	166	53	123	4.93e-17	79.3
Msa1346520	AT5G15020.2	42.105	152	79	2	13	157	49	198	1.07e-29	115
Msa1346520	AT5G15020.2	53.521	71	33	0	96	166	53	123	4.93e-17	79.3
Msa1346520	AT1G70060.2	40.994	161	83	2	7	157	5	163	2.95e-29	114
Msa1346520	AT1G70060.2	54.545	77	35	0	96	172	15	91	2.82e-18	82.8
Msa1346520	AT1G70060.1	40.994	161	83	2	7	157	5	163	2.95e-29	114
Msa1346520	AT1G70060.1	54.545	77	35	0	96	172	15	91	2.82e-18	82.8
Msa1346520	AT1G24230.1	36.552	145	83	2	13	156	11	147	6.30e-29	108
Msa1346520	AT1G24230.1	26.797	153	94	4	13	154	83	228	4.14e-13	66.2
Msa1346520	AT1G24200.1	37.333	150	90	1	12	157	10	159	5.37e-28	104
Msa1346520	AT1G24200.1	50.000	68	34	0	96	163	15	82	1.43e-14	69.3
Msa1346520	AT1G27260.1	36.538	156	84	2	14	156	1	154	1.33e-26	101
Msa1346520	AT1G10450.2	39.264	163	83	3	7	157	21	179	1.72e-25	103
Msa1346520	AT1G10450.2	48.529	68	35	0	96	163	34	101	1.52e-12	66.2
Msa1346520	AT1G10450.1	39.264	163	83	3	7	157	21	179	1.72e-25	103
Msa1346520	AT1G10450.1	48.529	68	35	0	96	163	34	101	1.52e-12	66.2
Msa1346520	AT1G10450.3	39.264	163	83	3	7	157	72	230	1.81e-25	103
Msa1346520	AT1G10450.3	48.529	68	35	0	96	163	85	152	1.39e-12	66.2
Msa1346520	AT1G59890.4	41.060	151	74	3	17	157	46	191	5.26e-25	102
Msa1346520	AT1G59890.4	50.000	74	37	0	96	169	46	119	4.68e-15	73.6
Msa1346520	AT1G59890.2	41.060	151	74	3	17	157	46	191	5.58e-25	102
Msa1346520	AT1G59890.2	50.000	74	37	0	96	169	46	119	4.69e-15	73.6
Msa1346520	AT1G59890.3	41.060	151	74	3	17	157	46	191	5.96e-25	102
Msa1346520	AT1G59890.3	50.000	74	37	0	96	169	46	119	5.10e-15	73.2
Msa1346520	AT1G59890.1	41.060	151	74	3	17	157	46	191	6.14e-25	102
Msa1346520	AT1G59890.1	50.000	74	37	0	96	169	46	119	5.06e-15	73.2
Msa1346520	AT1G70030.1	35.762	151	90	2	13	157	8	157	9.10e-23	90.1
Msa1346520	AT1G70030.1	44.118	68	38	0	99	166	15	82	5.50e-13	64.3
Msa1346520	AT1G24250.1	29.843	191	105	3	1	164	1	189	8.00e-21	87.4
Msa1346520	AT1G23810.1	32.184	174	102	3	7	164	5	178	1.99e-20	85.9
Msa1346520	AT5G15025.1	55.882	68	30	0	13	80	44	111	2.49e-19	80.1
Msa1346520	AT5G15025.1	44.000	75	42	0	96	170	48	122	4.95e-14	66.2
Msa1346520	AT4G12020.2	59.701	67	26	1	13	79	305	370	3.46e-18	82.4
Msa1346520	AT4G12020.2	46.667	75	39	1	95	169	308	381	5.89e-15	73.2
Msa1346520	AT4G12020.4	59.701	67	26	1	13	79	305	370	3.56e-18	82.4
Msa1346520	AT4G12020.4	46.667	75	39	1	95	169	308	381	6.17e-15	73.2
Msa1346520	AT4G12020.1	59.701	67	26	1	13	79	305	370	3.58e-18	82.4
Msa1346520	AT4G12020.1	46.667	75	39	1	95	169	308	381	6.21e-15	73.2
Msa1346520	AT4G12020.9	59.701	67	26	1	13	79	305	370	3.58e-18	82.4
Msa1346520	AT4G12020.9	46.667	75	39	1	95	169	308	381	6.21e-15	73.2
Msa1346520	AT5G15040.1	52.174	69	33	0	14	82	1	69	3.80e-18	75.9
Msa1346520	AT5G15040.1	44.595	74	41	0	93	166	1	74	6.98e-13	62.4
Msa1346520	AT5G15040.3	52.174	69	33	0	14	82	1	69	3.80e-18	75.9
Msa1346520	AT5G15040.3	44.595	74	41	0	93	166	1	74	6.98e-13	62.4
Msa1346520	AT5G15040.2	52.174	69	33	0	14	82	1	69	3.80e-18	75.9
Msa1346520	AT5G15040.2	44.595	74	41	0	93	166	1	74	6.98e-13	62.4
Msa1346520	AT4G12020.7	59.701	67	26	1	13	79	305	370	3.90e-18	82.4
Msa1346520	AT4G12020.7	46.667	75	39	1	95	169	308	381	6.76e-15	73.2
Msa1346520	AT4G12020.5	59.701	67	26	1	13	79	238	303	3.90e-18	82.4
Msa1346520	AT4G12020.5	46.667	75	39	1	95	169	241	314	6.77e-15	73.2
Msa1346520	AT4G12020.3	59.701	67	26	1	13	79	305	370	3.95e-18	82.4
Msa1346520	AT4G12020.3	46.667	75	39	1	95	169	308	381	6.66e-15	73.2
Msa1346520	AT4G12020.10	59.701	67	26	1	13	79	305	370	4.35e-18	82.4
Msa1346520	AT4G12020.10	46.667	75	39	1	95	169	308	381	7.40e-15	72.8
Msa1346520	AT4G12020.6	59.701	67	26	1	13	79	305	370	4.90e-18	82.0
Msa1346520	AT4G12020.6	46.667	75	39	1	95	169	308	381	8.18e-15	72.8
Msa1346520	AT4G12020.8	59.701	67	26	1	13	79	305	370	4.90e-18	82.0
Msa1346520	AT4G12020.8	46.667	75	39	1	95	169	308	381	8.18e-15	72.8
Msa1346520	AT4G12020.11	59.701	67	26	1	13	79	305	370	7.36e-18	81.6
Msa1346520	AT4G12020.11	46.667	75	39	1	95	169	308	381	1.12e-14	72.4
Msa1346520	AT1G70030.2	36.000	125	72	2	1	117	7	131	3.72e-16	72.4
Msa1346520	AT1G70030.2	44.118	68	38	0	99	166	26	93	2.58e-13	64.7
Msa1346520	AT1G27250.1	43.750	80	43	1	2	79	5	84	7.91e-16	71.2
Msa1346520	AT1G27250.1	42.857	77	44	0	86	162	12	88	2.05e-12	62.4
Msa1346520	AT1G70030.3	38.384	99	55	1	13	105	19	117	2.11e-15	70.1
Msa1346520	AT1G70030.3	44.118	68	38	0	99	166	26	93	1.56e-13	65.1
Msa1346520	AT1G27220.1	46.575	73	37	1	9	79	5	77	6.14e-15	70.1
Msa1346520	AT1G27220.1	42.308	78	45	0	86	163	5	82	5.21e-13	65.1
Msa1346520	AT1G27270.1	33.537	164	85	3	15	156	13	174	1.79e-14	70.1
Msa1346520	AT1G27280.1	29.371	143	92	1	28	161	5	147	5.31e-13	65.9
Msa1346520	AT1G27280.1	39.394	66	40	0	13	78	78	143	4.27e-11	60.5
Msa1346520	AT1G27240.1	39.437	71	43	0	12	82	10	80	1.56e-12	63.5

Find 31 sgRNAs with CRISPR-Local

Find 34 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TGAATTTGTGAAAGCTATTA+AGG	0.207434	tig0009027:+18357	Msa1346520:CDS
AGATTGAAGGATTTGTTTAA+AGG	0.287517	tig0009027:+18184	Msa1346520:CDS
TAATCAAACTTGCTCCCTTT+TGG	0.325065	tig0009027:-18244	None:intergenic
AAAGGGAGCAAGTTTGATTA+TGG	0.329129	tig0009027:+18247	Msa1346520:CDS
GTACTGATTTGATATTTCTT+TGG	0.342104	tig0009027:-18481	None:intergenic
AGAGTGAAGGAACTATTTAA+AGG	0.356818	tig0009027:+18421	Msa1346520:CDS
GATTGAAGGATTTGTTTAAA+GGG	0.359025	tig0009027:+18185	Msa1346520:CDS
AAATGTTATGATGGATTTCA+AGG	0.397261	tig0009027:+18129	Msa1346520:CDS
GCTTCTTCCAACACTCCAAA+TGG	0.411742	tig0009027:-18277	None:intergenic
GGGCATACAAATTTAACGTT+GGG	0.437947	tig0009027:+18442	Msa1346520:CDS
GATTATGGCATAGATCCATT+TGG	0.439528	tig0009027:+18262	Msa1346520:CDS
TTCAACATCTTCGTGCCAAA+AGG	0.444915	tig0009027:+18229	Msa1346520:CDS
GAGTGAAGGAACTATTTAAA+GGG	0.467701	tig0009027:+18422	Msa1346520:CDS
CATAGATCCATTTGGAGTGT+TGG	0.482305	tig0009027:+18270	Msa1346520:CDS
TATCAAATCAGTACTGATGA+TGG	0.498943	tig0009027:+18490	Msa1346520:CDS
TCAACATCTTCGTGCCAAAA+GGG	0.534332	tig0009027:+18230	Msa1346520:CDS
TCCATGAGACATGTTATCGC+TGG	0.536428	tig0009027:-18017	None:intergenic
TGGTGTCATAGCAAGATTGA+AGG	0.543726	tig0009027:+18171	Msa1346520:CDS
AGGGCATACAAATTTAACGT+TGG	0.547701	tig0009027:+18441	Msa1346520:CDS
TCCAGCGATAACATGTCTCA+TGG	0.552003	tig0009027:+18016	Msa1346520:CDS
AGTTGAGTTTCAATATGAGA+GGG	0.554210	tig0009027:+18324	Msa1346520:CDS
TGACGTAGAAGCAGAAGACA+TGG	0.554579	tig0009027:+18579	Msa1346520:CDS
GCTATTGCTTCTTCCATCGT+GGG	0.554911	tig0009027:-18046	None:intergenic
GAAAGCTATTAAGGATTGCA+AGG	0.560574	tig0009027:+18366	Msa1346520:CDS
TGCTATTGCTTCTTCCATCG+TGG	0.562428	tig0009027:-18047	None:intergenic
AAGTTGAGTTTCAATATGAG+AGG	0.581901	tig0009027:+18323	Msa1346520:CDS
AGAAGCAGAAGACATGGAAG+TGG	0.582532	tig0009027:+18585	Msa1346520:CDS
ATGTCTCGCGAAAAGAGTGA+AGG	0.647795	tig0009027:+18408	Msa1346520:CDS
GCTATGAAAATTGATACAAG+TGG	0.667045	tig0009027:+18151	Msa1346520:CDS
AGAAGCAATAGCATATGTCG+AGG	0.681954	tig0009027:+18057	Msa1346520:CDS
TCATGGAGAAGTTCCCACGA+TGG	0.689488	tig0009027:+18033	Msa1346520:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	TGAATTTTTAAATGTTATGA+TGG	+	tig0009027:18120-18139	Msa1346520:CDS	15.0%
!!!	AAATGTTATGATGGATTTCA+AGG	+	tig0009027:18129-18148	Msa1346520:CDS	25.0%
!!	AGATTGAAGGATTTGTTTAA+AGG	+	tig0009027:18184-18203	Msa1346520:CDS	25.0%
!!	GATTGAAGGATTTGTTTAAA+GGG	+	tig0009027:18185-18204	Msa1346520:CDS	25.0%
!	TGAATTTGTGAAAGCTATTA+AGG	+	tig0009027:18357-18376	Msa1346520:CDS	25.0%
!!!	GTACTGATTTGATATTTCTT+TGG	-	tig0009027:18484-18503	None:intergenic	25.0%
	GCTATGAAAATTGATACAAG+TGG	+	tig0009027:18151-18170	Msa1346520:CDS	30.0%
!!	GGGCACACAAATTTAATTTT+AGG	+	tig0009027:18205-18224	Msa1346520:CDS	30.0%
	AAGTTGAGTTTCAATATGAG+AGG	+	tig0009027:18323-18342	Msa1346520:CDS	30.0%
	AGTTGAGTTTCAATATGAGA+GGG	+	tig0009027:18324-18343	Msa1346520:CDS	30.0%
	AGAGTGAAGGAACTATTTAA+AGG	+	tig0009027:18421-18440	Msa1346520:CDS	30.0%
	GAGTGAAGGAACTATTTAAA+GGG	+	tig0009027:18422-18441	Msa1346520:CDS	30.0%
!!	TATCAAATCAGTACTGATGA+TGG	+	tig0009027:18490-18509	Msa1346520:CDS	30.0%
!!	TAATCAAACTTGCTCCCTTT+TGG	-	tig0009027:18247-18266	None:intergenic	35.0%
	AAAGGGAGCAAGTTTGATTA+TGG	+	tig0009027:18247-18266	Msa1346520:CDS	35.0%
	GATTATGGCATAGATCCATT+TGG	+	tig0009027:18262-18281	Msa1346520:CDS	35.0%
!	GAAACTCAACTTTTACTGCA+TGG	-	tig0009027:18315-18334	None:intergenic	35.0%
	GAAAGCTATTAAGGATTGCA+AGG	+	tig0009027:18366-18385	Msa1346520:CDS	35.0%
	AGGGCATACAAATTTAACGT+TGG	+	tig0009027:18441-18460	Msa1346520:CDS	35.0%
	GGGCATACAAATTTAACGTT+GGG	+	tig0009027:18442-18461	Msa1346520:CDS	35.0%
	AGAAGCAATAGCATATGTCG+AGG	+	tig0009027:18057-18076	Msa1346520:CDS	40.0%
!!	TGGTGTCATAGCAAGATTGA+AGG	+	tig0009027:18171-18190	Msa1346520:CDS	40.0%
	TTCAACATCTTCGTGCCAAA+AGG	+	tig0009027:18229-18248	Msa1346520:CDS	40.0%
	TCAACATCTTCGTGCCAAAA+GGG	+	tig0009027:18230-18249	Msa1346520:CDS	40.0%
!	CATAGATCCATTTGGAGTGT+TGG	+	tig0009027:18270-18289	Msa1346520:CDS	40.0%
	TCCAGCGATAACATGTCTCA+TGG	+	tig0009027:18016-18035	Msa1346520:CDS	45.0%
	TCCATGAGACATGTTATCGC+TGG	-	tig0009027:18020-18039	None:intergenic	45.0%
	GCTATTGCTTCTTCCATCGT+GGG	-	tig0009027:18049-18068	None:intergenic	45.0%
	TGCTATTGCTTCTTCCATCG+TGG	-	tig0009027:18050-18069	None:intergenic	45.0%
	GCTTCTTCCAACACTCCAAA+TGG	-	tig0009027:18280-18299	None:intergenic	45.0%
	ATGTCTCGCGAAAAGAGTGA+AGG	+	tig0009027:18408-18427	Msa1346520:CDS	45.0%
	TGACGTAGAAGCAGAAGACA+TGG	+	tig0009027:18579-18598	Msa1346520:CDS	45.0%
	AGAAGCAGAAGACATGGAAG+TGG	+	tig0009027:18585-18604	Msa1346520:CDS	45.0%
	TCATGGAGAAGTTCCCACGA+TGG	+	tig0009027:18033-18052	Msa1346520:CDS	50.0%

Chromosome	Type	Strat	End	Strand	Name
tig0009027	gene	18013	18612	18013	ID=Msa1346520;Name=Msa1346520
tig0009027	mRNA	18013	18612	18013	ID=Msa1346520-mRNA-1;Parent=Msa1346520;Name=Msa1346520-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|199
tig0009027	exon	18013	18612	18013	ID=Msa1346520-mRNA-1:exon:5533;Parent=Msa1346520-mRNA-1
tig0009027	CDS	18013	18612	18013	ID=Msa1346520-mRNA-1:cds;Parent=Msa1346520-mRNA-1

Gene Sequence

>Msa1346520

ATGTCCAGCGATAACATGTCTCATGGAGAAGTTCCCACGATGGAAGAAGCAATAGCATATGTCGAGGCTGTAAAAGACGAGTTTCAAGATGAGATAGAAAAGTATGATGAATTTTTAAATGTTATGATGGATTTCAAGGCTATGAAAATTGATACAAGTGGTGTCATAGCAAGATTGAAGGATTTGTTTAAAGGGCACACAAATTTAATTTTAGGATTCAACATCTTCGTGCCAAAAGGGAGCAAGTTTGATTATGGCATAGATCCATTTGGAGTGTTGGAAGAAGCAAAAGCATATGTCCATGCAGTAAAAGTTGAGTTTCAATATGAGAGGGAAAAGTATGATGAATTTGTGAAAGCTATTAAGGATTGCAAGGCTGAGAGAATTGATACAAAATGTCTCGCGAAAAGAGTGAAGGAACTATTTAAAGGGCATACAAATTTAACGTTGGGATTTAACAACTTTCTGCCAAAGAAATATCAAATCAGTACTGATGATGGTGATGATGATGATGCTGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGAGACTGACGTAGAAGCAGAAGACATGGAAGTGGATTAG

Protein sequence

>Msa1346520

MSSDNMSHGEVPTMEEAIAYVEAVKDEFQDEIEKYDEFLNVMMDFKAMKIDTSGVIARLKDLFKGHTNLILGFNIFVPKGSKFDYGIDPFGVLEEAKAYVHAVKVEFQYEREKYDEFVKAIKDCKAERIDTKCLAKRVKELFKGHTNLTLGFNNFLPKKYQISTDDGDDDDADDDDDDDDDDDDDDDETDVEAEDMEVD*