Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1348140 | XP_013447014.1 | 90.780 | 141 | 13 | 0 | 33 | 173 | 14 | 154 | 5.00e-86 | 259 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1348140 | sp|Q1G3Q4|RITF1_ARATH | 29.193 | 161 | 87 | 3 | 8 | 143 | 2 | 160 | 6.98e-14 | 70.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1348140 | A0A072TV38 | 90.780 | 141 | 13 | 0 | 33 | 173 | 14 | 154 | 2.39e-86 | 259 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1348140 | TF | PLATZ |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1348140 | MtrunA17_Chr8g0386511 | 90.780 | 141 | 13 | 0 | 33 | 173 | 14 | 154 | 4.60e-90 | 259 |
| Msa1348140 | MtrunA17_Chr5g0434331 | 32.487 | 197 | 84 | 4 | 3 | 173 | 34 | 207 | 8.02e-27 | 100 |
| Msa1348140 | MtrunA17_Chr7g0265291 | 29.703 | 202 | 101 | 5 | 9 | 172 | 4 | 202 | 7.05e-20 | 82.4 |
| Msa1348140 | MtrunA17_Chr1g0179781 | 27.411 | 197 | 105 | 4 | 12 | 172 | 7 | 201 | 1.14e-17 | 76.6 |
| Msa1348140 | MtrunA17_Chr4g0040071 | 26.531 | 196 | 107 | 5 | 12 | 172 | 15 | 208 | 2.52e-16 | 73.6 |
| Msa1348140 | MtrunA17_Chr2g0297251 | 31.169 | 154 | 79 | 3 | 11 | 139 | 36 | 187 | 3.23e-16 | 73.9 |
| Msa1348140 | MtrunA17_Chr5g0411151 | 28.788 | 198 | 102 | 7 | 12 | 172 | 35 | 230 | 1.59e-15 | 71.6 |
| Msa1348140 | MtrunA17_Chr5g0395181 | 26.042 | 192 | 112 | 4 | 9 | 172 | 18 | 207 | 8.59e-15 | 69.3 |
| Msa1348140 | MtrunA17_Chr7g0230511 | 26.519 | 181 | 93 | 6 | 12 | 155 | 9 | 186 | 6.46e-14 | 67.4 |
| Msa1348140 | MtrunA17_Chr8g0366581 | 26.263 | 198 | 107 | 6 | 12 | 172 | 33 | 228 | 1.16e-13 | 66.6 |
| Msa1348140 | MtrunA17_Chr4g0065041 | 30.282 | 142 | 72 | 3 | 10 | 126 | 6 | 145 | 1.33e-13 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1348140 | AT5G46710.3 | 28.959 | 221 | 96 | 5 | 1 | 172 | 1 | 209 | 7.21e-21 | 85.5 |
| Msa1348140 | AT5G46710.1 | 30.000 | 210 | 86 | 5 | 12 | 172 | 28 | 225 | 1.04e-20 | 85.5 |
| Msa1348140 | AT2G27930.1 | 31.188 | 202 | 86 | 6 | 9 | 172 | 1 | 187 | 8.70e-19 | 79.7 |
| Msa1348140 | AT2G27930.4 | 31.188 | 202 | 86 | 6 | 9 | 172 | 1 | 187 | 8.70e-19 | 79.7 |
| Msa1348140 | AT1G32700.1 | 28.079 | 203 | 108 | 6 | 6 | 172 | 6 | 206 | 4.42e-18 | 78.2 |
| Msa1348140 | AT2G01818.1 | 30.516 | 213 | 94 | 9 | 13 | 173 | 12 | 222 | 6.39e-18 | 78.2 |
| Msa1348140 | AT1G31040.1 | 29.258 | 229 | 91 | 8 | 11 | 172 | 18 | 242 | 1.03e-17 | 77.8 |
| Msa1348140 | AT1G43000.2 | 28.054 | 221 | 108 | 7 | 1 | 172 | 5 | 223 | 3.28e-17 | 76.3 |
| Msa1348140 | AT1G43000.1 | 28.972 | 214 | 101 | 7 | 8 | 172 | 5 | 216 | 9.55e-17 | 74.7 |
| Msa1348140 | AT4G17900.2 | 28.351 | 194 | 105 | 4 | 12 | 172 | 20 | 212 | 1.51e-16 | 74.3 |
| Msa1348140 | AT4G17900.1 | 28.351 | 194 | 105 | 4 | 12 | 172 | 34 | 226 | 1.81e-16 | 74.3 |
| Msa1348140 | AT2G12646.1 | 29.193 | 161 | 87 | 3 | 8 | 143 | 2 | 160 | 7.09e-15 | 70.5 |
| Msa1348140 | AT2G12646.2 | 29.193 | 161 | 87 | 3 | 8 | 143 | 2 | 160 | 7.09e-15 | 70.5 |
| Msa1348140 | AT1G76590.1 | 27.528 | 178 | 93 | 5 | 3 | 154 | 9 | 176 | 1.01e-14 | 70.1 |
| Msa1348140 | AT5G46710.2 | 31.538 | 130 | 62 | 3 | 12 | 115 | 28 | 156 | 2.83e-14 | 67.4 |
| Msa1348140 | AT2G12646.3 | 29.747 | 158 | 84 | 3 | 11 | 143 | 2 | 157 | 4.41e-14 | 68.2 |
| Msa1348140 | AT1G21000.1 | 25.322 | 233 | 100 | 8 | 12 | 172 | 16 | 246 | 3.33e-13 | 65.9 |
| Msa1348140 | AT1G21000.2 | 25.322 | 233 | 100 | 8 | 12 | 172 | 13 | 243 | 3.60e-13 | 65.9 |
| Msa1348140 | AT2G27930.5 | 31.250 | 176 | 86 | 6 | 8 | 172 | 39 | 190 | 9.69e-13 | 63.5 |
| Msa1348140 | AT2G27930.6 | 31.250 | 176 | 86 | 6 | 8 | 172 | 39 | 190 | 9.69e-13 | 63.5 |
| Msa1348140 | AT1G32700.2 | 30.147 | 136 | 83 | 4 | 47 | 172 | 34 | 167 | 2.68e-12 | 62.0 |
| Msa1348140 | AT3G60670.1 | 29.323 | 133 | 67 | 3 | 10 | 117 | 5 | 135 | 1.88e-11 | 60.8 |
Find 39 sgRNAs with CRISPR-Local
Find 209 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGGACCTTCTTTGGGAAAA+AGG | 0.129448 | tig0010194:+141054 | Msa1348140:CDS |
| AATAAAGTTTAGAATTATTT+TGG | 0.156719 | tig0010194:+141227 | Msa1348140:three_prime_UTR |
| GGGAACTTCTGGACCTTCTT+TGG | 0.210937 | tig0010194:+141046 | Msa1348140:CDS |
| GAAACACAGGAGGGAACTTC+TGG | 0.286766 | tig0010194:+141035 | Msa1348140:CDS |
| AAAAGAGCCTCAAGCCAAAT+TGG | 0.306260 | tig0010194:-139787 | None:intergenic |
| TATAATGCCATATGAAAATA+AGG | 0.324258 | tig0010194:-141276 | None:intergenic |
| GGAACTTCTGGACCTTCTTT+GGG | 0.337965 | tig0010194:+141047 | Msa1348140:CDS |
| TCAAGTGGTGTTGTGCTAAC+TGG | 0.344627 | tig0010194:-140969 | None:intergenic |
| TTGATGCTATCTCACTGAAT+TGG | 0.402058 | tig0010194:-140725 | None:intergenic |
| CTCCTCGGGACCTTCCATCC+AGG | 0.410186 | tig0010194:+140995 | Msa1348140:CDS |
| CCAGGGTCCTCCTCAGCATC+AGG | 0.432791 | tig0010194:+141013 | Msa1348140:CDS |
| TAGTCATCACCTTGCAAGAA+AGG | 0.434907 | tig0010194:-140815 | None:intergenic |
| GATTAAATCTACTACTCATC+TGG | 0.437954 | tig0010194:+141193 | Msa1348140:three_prime_UTR |
| TCCTCGGGACCTTCCATCCA+GGG | 0.458929 | tig0010194:+140996 | Msa1348140:CDS |
| GCACAGTAGCGATATAAATC+AGG | 0.468363 | tig0010194:-140792 | None:intergenic |
| GTACTGTACAGATTGCAATA+TGG | 0.468846 | tig0010194:+139870 | Msa1348140:CDS |
| CGTAGACTTACAAAAGCAAC+AGG | 0.478767 | tig0010194:+140676 | Msa1348140:intron |
| CCTGATGCTGAGGAGGACCC+TGG | 0.491773 | tig0010194:-141013 | None:intergenic |
| CTACTGTGCCCTTTCTTGCA+AGG | 0.513621 | tig0010194:+140806 | Msa1348140:CDS |
| AACACCACTTGAGTCCTCCT+CGG | 0.524378 | tig0010194:+140980 | Msa1348140:CDS |
| ACACCACTTGAGTCCTCCTC+GGG | 0.531101 | tig0010194:+140981 | Msa1348140:CDS |
| TCCTGTGTTTCCTGATGCTG+AGG | 0.533529 | tig0010194:-141023 | None:intergenic |
| TAAAAGAAGGGAGATCTATG+AGG | 0.542712 | tig0010194:-141092 | None:intergenic |
| AGTCATCACCTTGCAAGAAA+GGG | 0.543071 | tig0010194:-140814 | None:intergenic |
| GTTCTACTCATCAAATTCGT+AGG | 0.546464 | tig0010194:+139833 | Msa1348140:CDS |
| TGTGTTTCCTGATGCTGAGG+AGG | 0.548455 | tig0010194:-141020 | None:intergenic |
| ATGCTGAGGAGGACCCTGGA+TGG | 0.559712 | tig0010194:-141009 | None:intergenic |
| TGTTGTTGCTCTGAGTGCTA+TGG | 0.578177 | tig0010194:+139972 | Msa1348140:CDS |
| ACCCTGGATGGAAGGTCCCG+AGG | 0.582964 | tig0010194:-140997 | None:intergenic |
| TTACAAAAGCAACAGGAAAG+TGG | 0.586060 | tig0010194:+140683 | Msa1348140:CDS |
| TCCTCAGCATCAGGAAACAC+AGG | 0.589871 | tig0010194:+141022 | Msa1348140:CDS |
| TGAGGAGGACCCTGGATGGA+AGG | 0.592506 | tig0010194:-141005 | None:intergenic |
| GCTATCTCACTGAATTGGCG+AGG | 0.635923 | tig0010194:-140720 | None:intergenic |
| TCAGCATCAGGAAACACAGG+AGG | 0.659675 | tig0010194:+141025 | Msa1348140:CDS |
| GCTAACTGGATCCTCAGACT+CGG | 0.666411 | tig0010194:-140955 | None:intergenic |
| GGTCCCGAGGAGGACTCAAG+TGG | 0.671750 | tig0010194:-140984 | None:intergenic |
| AATGCCATATGAAAATAAGG+AGG | 0.673457 | tig0010194:-141273 | None:intergenic |
| CAGCATCAGGAAACACAGGA+GGG | 0.689712 | tig0010194:+141026 | Msa1348140:CDS |
| CTGGATGGAAGGTCCCGAGG+AGG | 0.711333 | tig0010194:-140994 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAGATTAAAAATTAAAAAT+AGG | - | tig0010194:138752-138771 | None:intergenic | 10.0% |
| !! | AAATTATATTTATTTGTGTT+TGG | + | tig0010194:139455-139474 | Msa1348140:intron | 10.0% |
| !! | ATATATTGTATGTTTAATAT+GGG | - | tig0010194:139539-139558 | None:intergenic | 10.0% |
| !! | AATATATTGTATGTTTAATA+TGG | - | tig0010194:139540-139559 | None:intergenic | 10.0% |
| !!! | AATAAAGTTTAGAATTATTT+TGG | + | tig0010194:141227-141246 | Msa1348140:three_prime_UTR | 10.0% |
| !! | TTTCATAATATATCATTCTA+TGG | + | tig0010194:138266-138285 | Msa1348140:intron | 15.0% |
| !!! | TAAATTTTGTAAAGACTAAA+TGG | - | tig0010194:138419-138438 | None:intergenic | 15.0% |
| !!! | TAATTTTTAATCTGTATAAG+AGG | + | tig0010194:138757-138776 | Msa1348140:intron | 15.0% |
| !!! | TATCTTTACATATTTTTACA+TGG | + | tig0010194:139118-139137 | Msa1348140:intron | 15.0% |
| !!! | TATATATTTTCAGTATTTTG+TGG | - | tig0010194:139936-139955 | None:intergenic | 15.0% |
| !! | AATATATAGACATATTTACA+AGG | + | tig0010194:139948-139967 | Msa1348140:intron | 15.0% |
| !! | TTGAGGTTTATTGAAAATTA+GGG | + | tig0010194:137770-137789 | Msa1348140:intron | 20.0% |
| !!! | TATACAAATTTCCCATTTTT+CGG | - | tig0010194:137800-137819 | None:intergenic | 20.0% |
| !! | TTAAATTTAGCATTAAAGGA+TGG | - | tig0010194:137853-137872 | None:intergenic | 20.0% |
| !!! | AGCTTTAAATTTAGCATTAA+AGG | - | tig0010194:137857-137876 | None:intergenic | 20.0% |
| !!! | AAAATAAAGATTGTTTCTGT+TGG | + | tig0010194:138207-138226 | Msa1348140:intron | 20.0% |
| !! | ATAATATATCATTCTATGGA+AGG | + | tig0010194:138270-138289 | Msa1348140:intron | 20.0% |
| !! | TATGAAAAAGTTCATATACT+TGG | - | tig0010194:138457-138476 | None:intergenic | 20.0% |
| !! | AATATTCAATTAAAACTCCT+TGG | + | tig0010194:138870-138889 | Msa1348140:intron | 20.0% |
| !!! | ATAGATAAGCTCTTAAATTT+TGG | + | tig0010194:138963-138982 | Msa1348140:intron | 20.0% |
| !!! | TGAATATGAAGTACTTTATT+AGG | + | tig0010194:139020-139039 | Msa1348140:intron | 20.0% |
| !!! | AAGATTTTCAAAGATAAACA+TGG | - | tig0010194:139174-139193 | None:intergenic | 20.0% |
| !!! | AATCATGCTTTAAAATGAAT+TGG | - | tig0010194:139244-139263 | None:intergenic | 20.0% |
| !! | ATATGTTAATTAGCATACAT+TGG | - | tig0010194:139602-139621 | None:intergenic | 20.0% |
| !!! | CTTTTGAGAGAAAATTATTT+TGG | + | tig0010194:139805-139824 | Msa1348140:CDS | 20.0% |
| !! | TTGTATGTTGAAAAATGAAA+AGG | + | tig0010194:140361-140380 | Msa1348140:intron | 20.0% |
| !! | TGTATGTTGAAAAATGAAAA+GGG | + | tig0010194:140362-140381 | Msa1348140:intron | 20.0% |
| !!! | AAAAATTCATGTTTTTGTCT+AGG | + | tig0010194:140438-140457 | Msa1348140:intron | 20.0% |
| !! | GAGTTATTTGTAATTAAGTA+GGG | - | tig0010194:140547-140566 | None:intergenic | 20.0% |
| !! | AGAGTTATTTGTAATTAAGT+AGG | - | tig0010194:140548-140567 | None:intergenic | 20.0% |
| !!! | TTTTTATCTGAATTTTCATC+AGG | + | tig0010194:140911-140930 | Msa1348140:intron | 20.0% |
| !! | TATAATGCCATATGAAAATA+AGG | - | tig0010194:141279-141298 | None:intergenic | 20.0% |
| !! | TTATGAGTGAAATTTTACCT+TGG | - | tig0010194:137580-137599 | None:intergenic | 25.0% |
| !! | TTTGCTTCAATTCATTTTAG+CGG | + | tig0010194:137610-137629 | Msa1348140:intron | 25.0% |
| ! | CTAAATCTAACTAACCAAAT+TGG | - | tig0010194:137639-137658 | None:intergenic | 25.0% |
| !! | TTTCCATGGATATTATTTCT+AGG | + | tig0010194:137720-137739 | Msa1348140:intron | 25.0% |
| ! | AAACCTAGAAATAATATCCA+TGG | - | tig0010194:137726-137745 | None:intergenic | 25.0% |
| ! | AATTCAATGTTATATGCTTG+AGG | + | tig0010194:137753-137772 | Msa1348140:intron | 25.0% |
| ! | CTTGAGGTTTATTGAAAATT+AGG | + | tig0010194:137769-137788 | Msa1348140:intron | 25.0% |
| !!! | CAATTTTTAAGACTAGAACA+GGG | - | tig0010194:137920-137939 | None:intergenic | 25.0% |
| !!! | CTGTTCTAGTCTTAAAAATT+GGG | + | tig0010194:137919-137938 | Msa1348140:intron | 25.0% |
| !! | AATTTGGGTTAATATGTTAC+AGG | - | tig0010194:138141-138160 | None:intergenic | 25.0% |
| ! | TCAAAATATATAGGATCACA+GGG | - | tig0010194:138185-138204 | None:intergenic | 25.0% |
| ! | TTCAAAATATATAGGATCAC+AGG | - | tig0010194:138186-138205 | None:intergenic | 25.0% |
| ! | ATTGCAAATTTCTCAACAAA+TGG | - | tig0010194:138233-138252 | None:intergenic | 25.0% |
| !! | ATTTGTTGAGAAATTTGCAA+TGG | + | tig0010194:138232-138251 | Msa1348140:intron | 25.0% |
| ! | ATAAAACATAACTCTTCCAT+TGG | + | tig0010194:138314-138333 | Msa1348140:intron | 25.0% |
| ! | TTCATAAAAACAAATGCCAA+TGG | - | tig0010194:138333-138352 | None:intergenic | 25.0% |
| ! | CAAAAAAGGAAAACCAAATT+TGG | - | tig0010194:138559-138578 | None:intergenic | 25.0% |
| ! | TCATATACTAAGTGCAAAAA+AGG | - | tig0010194:138573-138592 | None:intergenic | 25.0% |
| ! | TTCTTCTACAAAAATGAACA+TGG | + | tig0010194:138797-138816 | Msa1348140:intron | 25.0% |
| ! | GCTTATCTATATCAAAAGAA+CGG | - | tig0010194:138953-138972 | None:intergenic | 25.0% |
| ! | TGGTAGAAACATCTTATTAA+TGG | - | tig0010194:139154-139173 | None:intergenic | 25.0% |
| !!! | ATGCTTTAAAATGAATTGGT+TGG | - | tig0010194:139240-139259 | None:intergenic | 25.0% |
| !!! | CAATATGGAAGTATCAATTT+TGG | + | tig0010194:139423-139442 | Msa1348140:intron | 25.0% |
| !!! | TGGTTTTTTTGTTGTGTTAA+TGG | + | tig0010194:139493-139512 | Msa1348140:intron | 25.0% |
| !!! | TGGTTTTTCAACATTACTTT+GGG | - | tig0010194:139770-139789 | None:intergenic | 25.0% |
| !!! | TTGGTTTTTCAACATTACTT+TGG | - | tig0010194:139771-139790 | None:intergenic | 25.0% |
| ! | GTAATGTTGAAAAACCAATT+TGG | + | tig0010194:139773-139792 | Msa1348140:CDS | 25.0% |
| !! | ATATTTTCAGTATTTTGTGG+TGG | - | tig0010194:139933-139952 | None:intergenic | 25.0% |
| !!! | GAAAAATGAAAAGGGTATTT+TGG | + | tig0010194:140370-140389 | Msa1348140:intron | 25.0% |
| ! | TTGATTTAGAAACTGATCAT+AGG | - | tig0010194:140467-140486 | None:intergenic | 25.0% |
| ! | ACACAGTAAAAAAATTGGTT+CGG | - | tig0010194:140634-140653 | None:intergenic | 25.0% |
| !!! | ACCAATTTTTTTACTGTGTT+TGG | + | tig0010194:140635-140654 | Msa1348140:intron | 25.0% |
| ! | ACCAAACACAGTAAAAAAAT+TGG | - | tig0010194:140639-140658 | None:intergenic | 25.0% |
| !!! | TATACCTCCTTATTTTCATA+TGG | + | tig0010194:141269-141288 | Msa1348140:three_prime_UTR | 25.0% |
| ATAATCGATGCAAATTTCCA+TGG | + | tig0010194:137706-137725 | Msa1348140:intron | 30.0% | |
| TTAGCATTAAAGGATGGAAT+AGG | - | tig0010194:137847-137866 | None:intergenic | 30.0% | |
| !!! | CCAATTTTTAAGACTAGAAC+AGG | - | tig0010194:137921-137940 | None:intergenic | 30.0% |
| !! | CCTGTTCTAGTCTTAAAAAT+TGG | + | tig0010194:137918-137937 | Msa1348140:intron | 30.0% |
| ! | AATGGATCTTCTTGAGTTTT+TGG | - | tig0010194:137964-137983 | None:intergenic | 30.0% |
| TTCATATACTTGGTACACAA+TGG | - | tig0010194:138447-138466 | None:intergenic | 30.0% | |
| AACGTAGACTTTACCAAATT+TGG | + | tig0010194:138543-138562 | Msa1348140:intron | 30.0% | |
| ACAAAAATGAACATGGTATG+TGG | + | tig0010194:138804-138823 | Msa1348140:intron | 30.0% | |
| TATACTTCCTCTGTGTTAAA+TGG | + | tig0010194:138844-138863 | Msa1348140:intron | 30.0% | |
| AACAATATTGCGAAGAAATC+TGG | - | tig0010194:139086-139105 | None:intergenic | 30.0% | |
| AAAGCATGATTGAAATAAGC+TGG | + | tig0010194:139253-139272 | Msa1348140:intron | 30.0% | |
| TTGAGAATAACTACAACAAG+AGG | - | tig0010194:139319-139338 | None:intergenic | 30.0% | |
| TAGTTATTCTCAAGTTCAAC+AGG | + | tig0010194:139326-139345 | Msa1348140:intron | 30.0% | |
| TGAAGAAACATGTAGCAATA+TGG | + | tig0010194:139408-139427 | Msa1348140:intron | 30.0% | |
| ! | TTTGGCTCACAATTAAATAC+TGG | + | tig0010194:139473-139492 | Msa1348140:intron | 30.0% |
| CAATATAAACTTGACTGACA+TGG | + | tig0010194:139725-139744 | Msa1348140:intron | 30.0% | |
| TGCCAATATTGTATATCATC+TGG | + | tig0010194:139898-139917 | Msa1348140:intron | 30.0% | |
| CACCAGATGATATACAATAT+TGG | - | tig0010194:139903-139922 | None:intergenic | 30.0% | |
| !! | CTACTTTTCCTTCATATTGT+TGG | + | tig0010194:140201-140220 | Msa1348140:intron | 30.0% |
| ! | AAAACGACTTTACTAGCTTA+AGG | + | tig0010194:140238-140257 | Msa1348140:intron | 30.0% |
| ! | AAACGACTTTACTAGCTTAA+GGG | + | tig0010194:140239-140258 | Msa1348140:intron | 30.0% |
| !!! | GTTTGGTTTTGATTCTTCTT+TGG | + | tig0010194:140652-140671 | Msa1348140:intron | 30.0% |
| TTTGGGAAAAAGGAAAAGAA+AGG | + | tig0010194:141064-141083 | Msa1348140:CDS | 30.0% | |
| TTGGGAAAAAGGAAAAGAAA+GGG | + | tig0010194:141065-141084 | Msa1348140:CDS | 30.0% | |
| !! | CACTTGAGCTTTTAAAAGAA+GGG | - | tig0010194:141107-141126 | None:intergenic | 30.0% |
| !! | CTTCTTTTAAAAGCTCAAGT+GGG | + | tig0010194:141106-141125 | Msa1348140:exon | 30.0% |
| GATTAAATCTACTACTCATC+TGG | + | tig0010194:141193-141212 | Msa1348140:three_prime_UTR | 30.0% | |
| AATGCCATATGAAAATAAGG+AGG | - | tig0010194:141276-141295 | None:intergenic | 30.0% | |
| ! | AAAGACATGAGACACACTTT+TGG | - | tig0010194:137388-137407 | None:intergenic | 35.0% |
| !! | CATTTTAGCGGAATCCAATT+TGG | + | tig0010194:137622-137641 | Msa1348140:intron | 35.0% |
| AATTAGGGTCTTCCGAAAAA+TGG | + | tig0010194:137785-137804 | Msa1348140:intron | 35.0% | |
| ATTAGGGTCTTCCGAAAAAT+GGG | + | tig0010194:137786-137805 | Msa1348140:intron | 35.0% | |
| TTTCTGTAAAACGCAAGACT+TGG | - | tig0010194:137823-137842 | None:intergenic | 35.0% | |
| GCAAGCAAAACGAAAAAAGT+AGG | - | tig0010194:138073-138092 | None:intergenic | 35.0% | |
| AATTAGGGGGTCTCAAATTT+GGG | - | tig0010194:138156-138175 | None:intergenic | 35.0% | |
| AAATTAGGGGGTCTCAAATT+TGG | - | tig0010194:138157-138176 | None:intergenic | 35.0% | |
| TTCATAATCAAAAGTGAGCC+CGG | + | tig0010194:138471-138490 | Msa1348140:intron | 35.0% | |
| !! | ATAAGCAGAGTTTTGATACC+GGG | - | tig0010194:138492-138511 | None:intergenic | 35.0% |
| !! | CATAAGCAGAGTTTTGATAC+CGG | - | tig0010194:138493-138512 | None:intergenic | 35.0% |
| TCTGTATAAGAGGATAACGA+CGG | + | tig0010194:138767-138786 | Msa1348140:intron | 35.0% | |
| TATTGCACCATTTAACACAG+AGG | - | tig0010194:138854-138873 | None:intergenic | 35.0% | |
| GAGGATTAACTACGCTAAAA+GGG | - | tig0010194:139300-139319 | None:intergenic | 35.0% | |
| AGAGGATTAACTACGCTAAA+AGG | - | tig0010194:139301-139320 | None:intergenic | 35.0% | |
| AAGTTCAACAGGAAATCACT+TGG | + | tig0010194:139337-139356 | Msa1348140:intron | 35.0% | |
| CAGGAAATCACTTGGAATTT+CGG | + | tig0010194:139345-139364 | Msa1348140:intron | 35.0% | |
| GTTAATGGTGACATGAGTTA+AGG | + | tig0010194:139508-139527 | Msa1348140:intron | 35.0% | |
| !! | ACTGACATGGTTTAATTTGC+AGG | + | tig0010194:139738-139757 | Msa1348140:intron | 35.0% |
| !! | TGAAAAACCAATTTGGCTTG+AGG | + | tig0010194:139780-139799 | Msa1348140:CDS | 35.0% |
| GTTCTACTCATCAAATTCGT+AGG | + | tig0010194:139833-139852 | Msa1348140:CDS | 35.0% | |
| GTACTGTACAGATTGCAATA+TGG | + | tig0010194:139870-139889 | Msa1348140:CDS | 35.0% | |
| !! | TTTTGATTGCTCAGAGATTC+AGG | + | tig0010194:140002-140021 | Msa1348140:CDS | 35.0% |
| GAGAATCTCCAACAATATGA+AGG | - | tig0010194:140212-140231 | None:intergenic | 35.0% | |
| ! | TTTTGTCCTTCACTAACCAT+GGG | - | tig0010194:140422-140441 | None:intergenic | 35.0% |
| ! | TTTTTGTCCTTCACTAACCA+TGG | - | tig0010194:140423-140442 | None:intergenic | 35.0% |
| !! | TTTGATTTGCTAGAGAACAG+GGG | - | tig0010194:140520-140539 | None:intergenic | 35.0% |
| !! | GTTTGATTTGCTAGAGAACA+GGG | - | tig0010194:140521-140540 | None:intergenic | 35.0% |
| !! | TGTTTGATTTGCTAGAGAAC+AGG | - | tig0010194:140522-140541 | None:intergenic | 35.0% |
| TTACAAAAGCAACAGGAAAG+TGG | + | tig0010194:140683-140702 | Msa1348140:CDS | 35.0% | |
| TTGATGCTATCTCACTGAAT+TGG | - | tig0010194:140728-140747 | None:intergenic | 35.0% | |
| ! | CTTTTTGTTGCAAACTTCAC+AGG | - | tig0010194:140763-140782 | None:intergenic | 35.0% |
| ! | CTTTTCCTTTTTCCCAAAGA+AGG | - | tig0010194:141062-141081 | None:intergenic | 35.0% |
| TAAAAGAAGGGAGATCTATG+AGG | - | tig0010194:141095-141114 | None:intergenic | 35.0% | |
| !! | CCACTTGAGCTTTTAAAAGA+AGG | - | tig0010194:141108-141127 | None:intergenic | 35.0% |
| !! | CCTTCTTTTAAAAGCTCAAG+TGG | + | tig0010194:141105-141124 | Msa1348140:exon | 35.0% |
| ! | AGCTCACTCTTCTTTTCTCA+TGG | + | tig0010194:137544-137563 | Msa1348140:intron | 40.0% |
| ACTAGAACAGGGTCTCTAAA+TGG | - | tig0010194:137909-137928 | None:intergenic | 40.0% | |
| !! | TTTGAGACCCCCTAATTTTG+AGG | + | tig0010194:138159-138178 | Msa1348140:intron | 40.0% |
| ATCACAGGGCCTCAAAATTA+GGG | - | tig0010194:138171-138190 | None:intergenic | 40.0% | |
| CGCGATTGAATCTGACTAAA+CGG | - | tig0010194:138679-138698 | None:intergenic | 40.0% | |
| CTGTATAAGAGGATAACGAC+GGG | + | tig0010194:138768-138787 | Msa1348140:intron | 40.0% | |
| AAAGAGTCACATAGAGACCA+AGG | - | tig0010194:138890-138909 | None:intergenic | 40.0% | |
| AATGGTGACATGAGTTAAGG+CGG | + | tig0010194:139511-139530 | Msa1348140:intron | 40.0% | |
| !! | GACATGGTTTAATTTGCAGG+AGG | + | tig0010194:139741-139760 | Msa1348140:intron | 40.0% |
| AAAAGAGCCTCAAGCCAAAT+TGG | - | tig0010194:139790-139809 | None:intergenic | 40.0% | |
| ! | TTTTGGATAGTTAGTACCCC+TGG | + | tig0010194:140387-140406 | Msa1348140:intron | 40.0% |
| CGTAGACTTACAAAAGCAAC+AGG | + | tig0010194:140676-140695 | Msa1348140:intron | 40.0% | |
| GCACAGTAGCGATATAAATC+AGG | - | tig0010194:140795-140814 | None:intergenic | 40.0% | |
| AGTCATCACCTTGCAAGAAA+GGG | - | tig0010194:140817-140836 | None:intergenic | 40.0% | |
| TAGTCATCACCTTGCAAGAA+AGG | - | tig0010194:140818-140837 | None:intergenic | 40.0% | |
| CGATCAAAGAGGACAATAAG+TGG | - | tig0010194:140858-140877 | None:intergenic | 40.0% | |
| TATCGAATGTGCGATCAAAG+AGG | - | tig0010194:140869-140888 | None:intergenic | 40.0% | |
| TTCAAAAAAGTCCGAGTCTG+AGG | + | tig0010194:140944-140963 | Msa1348140:CDS | 40.0% | |
| CTCATGGATGTGTGATTCCA+AGG | + | tig0010194:137560-137579 | Msa1348140:intron | 45.0% | |
| AAGCTCAATGTGTGTGCTTG+AGG | + | tig0010194:137872-137891 | Msa1348140:intron | 45.0% | |
| AGCTCAATGTGTGTGCTTGA+GGG | + | tig0010194:137873-137892 | Msa1348140:intron | 45.0% | |
| TCACAGGGCCTCAAAATTAG+GGG | - | tig0010194:138170-138189 | None:intergenic | 45.0% | |
| GATCACAGGGCCTCAAAATT+AGG | - | tig0010194:138172-138191 | None:intergenic | 45.0% | |
| AACCGAGCCTCGTATCAAAA+TGG | + | tig0010194:138610-138629 | Msa1348140:intron | 45.0% | |
| GGAGAAAGAATAACCCTAGG+CGG | - | tig0010194:138636-138655 | None:intergenic | 45.0% | |
| AGGGGAGAAAGAATAACCCT+AGG | - | tig0010194:138639-138658 | None:intergenic | 45.0% | |
| ! | TGTTGTTGCTCTGAGTGCTA+TGG | + | tig0010194:139972-139991 | Msa1348140:CDS | 45.0% |
| AGAAGAAGACAGAGCAGTAC+TGG | + | tig0010194:140314-140333 | Msa1348140:intron | 45.0% | |
| AGTTGTCCCATGGTTAGTGA+AGG | + | tig0010194:140413-140432 | Msa1348140:intron | 45.0% | |
| !! | TCAAGTGGTGTTGTGCTAAC+TGG | - | tig0010194:140972-140991 | None:intergenic | 45.0% |
| GGAACTTCTGGACCTTCTTT+GGG | + | tig0010194:141047-141066 | Msa1348140:CDS | 45.0% | |
| ! | CTGGACCTTCTTTGGGAAAA+AGG | + | tig0010194:141054-141073 | Msa1348140:CDS | 45.0% |
| !! | ATTTAAATAGATAAATAAAA+TGG | - | tig0010194:137982-138001 | None:intergenic | 5.0% |
| !!! | TTATTTTTTTCAAAATATAT+AGG | - | tig0010194:138194-138213 | None:intergenic | 5.0% |
| GCGACTGTCTCATACATAGC+AGG | - | tig0010194:137490-137509 | None:intergenic | 50.0% | |
| ! | TTTTCCTAGCGTGAGAAGCG+AGG | + | tig0010194:138095-138114 | Msa1348140:intron | 50.0% |
| TTTCCTAGCGTGAGAAGCGA+GGG | + | tig0010194:138096-138115 | Msa1348140:intron | 50.0% | |
| AGGGAGTGGATGTGTGGATT+GGG | + | tig0010194:138115-138134 | Msa1348140:intron | 50.0% | |
| CACAGGGCCTCAAAATTAGG+GGG | - | tig0010194:138169-138188 | None:intergenic | 50.0% | |
| ! | TTGATACGAGGCTCGGTTTC+TGG | - | tig0010194:138608-138627 | None:intergenic | 50.0% |
| !! | GGCCATTTTGATACGAGGCT+CGG | - | tig0010194:138615-138634 | None:intergenic | 50.0% |
| !! | TAGGCGGCCATTTTGATACG+AGG | - | tig0010194:138620-138639 | None:intergenic | 50.0% |
| TCGTATCAAAATGGCCGCCT+AGG | + | tig0010194:138619-138638 | Msa1348140:intron | 50.0% | |
| CGTATCAAAATGGCCGCCTA+GGG | + | tig0010194:138620-138639 | Msa1348140:intron | 50.0% | |
| ! | TCCCCTTTTCCTCTACTGCT+TGG | + | tig0010194:138653-138672 | Msa1348140:intron | 50.0% |
| GCCAAGCAGTAGAGGAAAAG+GGG | - | tig0010194:138657-138676 | None:intergenic | 50.0% | |
| GGCCAAGCAGTAGAGGAAAA+GGG | - | tig0010194:138658-138677 | None:intergenic | 50.0% | |
| ACTAAACGGCCAAGCAGTAG+AGG | - | tig0010194:138665-138684 | None:intergenic | 50.0% | |
| ACCATGGGACAACTTGTCCA+GGG | - | tig0010194:140407-140426 | None:intergenic | 50.0% | |
| AACCATGGGACAACTTGTCC+AGG | - | tig0010194:140408-140427 | None:intergenic | 50.0% | |
| GCTATCTCACTGAATTGGCG+AGG | - | tig0010194:140723-140742 | None:intergenic | 50.0% | |
| CTACTGTGCCCTTTCTTGCA+AGG | + | tig0010194:140806-140825 | Msa1348140:CDS | 50.0% | |
| GCTAACTGGATCCTCAGACT+CGG | - | tig0010194:140958-140977 | None:intergenic | 50.0% | |
| AACACCACTTGAGTCCTCCT+CGG | + | tig0010194:140980-140999 | Msa1348140:CDS | 50.0% | |
| TGTGTTTCCTGATGCTGAGG+AGG | - | tig0010194:141023-141042 | None:intergenic | 50.0% | |
| TCCTCAGCATCAGGAAACAC+AGG | + | tig0010194:141022-141041 | Msa1348140:CDS | 50.0% | |
| TCCTGTGTTTCCTGATGCTG+AGG | - | tig0010194:141026-141045 | None:intergenic | 50.0% | |
| TCAGCATCAGGAAACACAGG+AGG | + | tig0010194:141025-141044 | Msa1348140:CDS | 50.0% | |
| CAGCATCAGGAAACACAGGA+GGG | + | tig0010194:141026-141045 | Msa1348140:CDS | 50.0% | |
| GAAACACAGGAGGGAACTTC+TGG | + | tig0010194:141035-141054 | Msa1348140:CDS | 50.0% | |
| GGGAACTTCTGGACCTTCTT+TGG | + | tig0010194:141046-141065 | Msa1348140:CDS | 50.0% | |
| CATAGCAGGTGAAGTGCGAG+TGG | - | tig0010194:137476-137495 | None:intergenic | 55.0% | |
| GAGGGAGTGGATGTGTGGAT+TGG | + | tig0010194:138114-138133 | Msa1348140:intron | 55.0% | |
| CGGCCAAGCAGTAGAGGAAA+AGG | - | tig0010194:138659-138678 | None:intergenic | 55.0% | |
| CCATGGGACAACTTGTCCAG+GGG | - | tig0010194:140406-140425 | None:intergenic | 55.0% | |
| ACACCACTTGAGTCCTCCTC+GGG | + | tig0010194:140981-141000 | Msa1348140:CDS | 55.0% | |
| ACTCCCTCGCTTCTCACGCT+AGG | - | tig0010194:138102-138121 | None:intergenic | 60.0% | |
| TAGCGTGAGAAGCGAGGGAG+TGG | + | tig0010194:138101-138120 | Msa1348140:intron | 60.0% | |
| GAAGCGAGGGAGTGGATGTG+TGG | + | tig0010194:138109-138128 | Msa1348140:intron | 60.0% | |
| CCCCTGGACAAGTTGTCCCA+TGG | + | tig0010194:140403-140422 | Msa1348140:intron | 60.0% | |
| TCCTCGGGACCTTCCATCCA+GGG | + | tig0010194:140996-141015 | Msa1348140:CDS | 60.0% | |
| TGAGGAGGACCCTGGATGGA+AGG | - | tig0010194:141008-141027 | None:intergenic | 60.0% | |
| ATGCTGAGGAGGACCCTGGA+TGG | - | tig0010194:141012-141031 | None:intergenic | 60.0% | |
| GGTCCCGAGGAGGACTCAAG+TGG | - | tig0010194:140987-141006 | None:intergenic | 65.0% | |
| CTGGATGGAAGGTCCCGAGG+AGG | - | tig0010194:140997-141016 | None:intergenic | 65.0% | |
| CTCCTCGGGACCTTCCATCC+AGG | + | tig0010194:140995-141014 | Msa1348140:CDS | 65.0% | |
| ACCCTGGATGGAAGGTCCCG+AGG | - | tig0010194:141000-141019 | None:intergenic | 65.0% | |
| CCTGATGCTGAGGAGGACCC+TGG | - | tig0010194:141016-141035 | None:intergenic | 65.0% | |
| CCAGGGTCCTCCTCAGCATC+AGG | + | tig0010194:141013-141032 | Msa1348140:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0010194 | gene | 137364 | 141316 | 137364 | ID=Msa1348140;Name=Msa1348140 |
| tig0010194 | mRNA | 137364 | 141316 | 137364 | ID=Msa1348140-mRNA-1;Parent=Msa1348140;Name=Msa1348140-mRNA-1;_AED=0.25;_eAED=0.25;_QI=0|0.5|0.4|0.8|0.5|0.6|5|201|173 |
| tig0010194 | exon | 137364 | 137369 | 137364 | ID=Msa1348140-mRNA-1:exon:6227;Parent=Msa1348140-mRNA-1 |
| tig0010194 | exon | 139760 | 139891 | 139760 | ID=Msa1348140-mRNA-1:exon:6228;Parent=Msa1348140-mRNA-1 |
| tig0010194 | exon | 139970 | 140023 | 139970 | ID=Msa1348140-mRNA-1:exon:6229;Parent=Msa1348140-mRNA-1 |
| tig0010194 | exon | 140681 | 140827 | 140681 | ID=Msa1348140-mRNA-1:exon:6230;Parent=Msa1348140-mRNA-1 |
| tig0010194 | exon | 140933 | 141316 | 140933 | ID=Msa1348140-mRNA-1:exon:6231;Parent=Msa1348140-mRNA-1 |
| tig0010194 | CDS | 137364 | 137369 | 137364 | ID=Msa1348140-mRNA-1:cds;Parent=Msa1348140-mRNA-1 |
| tig0010194 | CDS | 139760 | 139891 | 139760 | ID=Msa1348140-mRNA-1:cds;Parent=Msa1348140-mRNA-1 |
| tig0010194 | CDS | 139970 | 140023 | 139970 | ID=Msa1348140-mRNA-1:cds;Parent=Msa1348140-mRNA-1 |
| tig0010194 | CDS | 140681 | 140827 | 140681 | ID=Msa1348140-mRNA-1:cds;Parent=Msa1348140-mRNA-1 |
| tig0010194 | CDS | 140933 | 141115 | 140933 | ID=Msa1348140-mRNA-1:cds;Parent=Msa1348140-mRNA-1 |
| tig0010194 | three_prime_UTR | 141116 | 141316 | 141116 | ID=Msa1348140-mRNA-1:three_prime_utr;Parent=Msa1348140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
