AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1349080

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1349080 MtrunA17_Chr1g0175611 93.491 169 11 0 1 169 1 169 5.41e-113 318
Msa1349080 MtrunA17_Chr1g0175601 82.840 169 28 1 1 168 1 169 1.86e-97 279
Msa1349080 MtrunA17_Chr1g0180591 79.167 168 35 0 1 168 1 168 2.41e-96 276
Msa1349080 MtrunA17_Chr1g0169761 77.976 168 37 0 1 168 1 168 1.83e-93 269
Msa1349080 MtrunA17_Chr8g0376821 77.246 167 38 0 1 167 1 167 2.60e-90 261
Msa1349080 MtrunA17_Chr4g0074101 69.892 186 39 2 1 169 1 186 3.65e-88 256
Msa1349080 MtrunA17_Chr8g0357771 58.929 168 69 0 1 168 1 168 1.11e-67 204
Msa1349080 MtrunA17_Chr8g0356071 52.381 168 74 3 1 168 1 162 3.67e-55 171
Msa1349080 MtrunA17_Chr4g0052061 39.634 164 87 2 1 164 1 152 1.21e-28 103
Msa1349080 MtrunA17_Chr3g0119901 41.481 135 67 2 1 128 8 137 1.70e-27 102
Msa1349080 MtrunA17_Chr3g0099411 40.580 138 79 2 2 136 9 146 1.41e-26 100
Msa1349080 MtrunA17_Chr1g0206991 47.525 101 51 1 2 100 9 109 1.54e-26 99.0
Msa1349080 MtrunA17_Chr1g0206721 47.525 101 51 1 2 100 9 109 1.26e-25 98.2
Msa1349080 MtrunA17_Chr1g0149391 40.625 128 73 3 2 127 9 135 9.69e-25 95.9
Msa1349080 MtrunA17_Chr3g0085241 42.105 114 64 1 1 112 40 153 1.31e-24 95.9
Msa1349080 MtrunA17_Chr1g0206701 46.535 101 52 1 2 100 9 109 1.66e-24 95.1
Msa1349080 MtrunA17_Chr3g0099421 59.420 69 28 0 2 70 34 102 2.29e-24 95.5
Msa1349080 MtrunA17_Chr1g0208561 43.564 101 55 1 2 100 9 109 6.30e-24 93.6
Msa1349080 MtrunA17_Chr5g0419601 55.556 72 32 0 1 72 8 79 7.40e-24 93.6
Msa1349080 MtrunA17_Chr4g0052081 47.525 101 48 2 1 97 1 100 7.91e-24 92.0
Msa1349080 MtrunA17_Chr3g0089141 43.564 101 55 1 2 100 9 109 1.32e-23 92.8
Msa1349080 MtrunA17_Chr2g0292791 59.420 69 28 0 2 70 9 77 2.55e-23 92.0
Msa1349080 MtrunA17_Chr2g0325971 44.554 101 54 1 2 100 9 109 3.12e-23 91.7
Msa1349080 MtrunA17_Chr2g0300421 43.564 101 55 1 2 100 9 109 5.33e-23 89.7
Msa1349080 MtrunA17_Chr8g0355091 44.554 101 54 1 2 100 9 109 6.01e-23 91.3
Msa1349080 MtrunA17_Chr1g0188671 43.564 101 55 1 2 100 47 147 1.55e-22 90.9
Msa1349080 MtrunA17_Chr5g0422421 50.000 80 40 0 2 81 9 88 3.08e-22 89.4
Msa1349080 MtrunA17_Chr1g0208581 41.584 101 57 1 2 100 9 109 3.45e-22 89.0
Msa1349080 MtrunA17_Chr3g0089151 40.909 110 63 1 2 109 9 118 5.40e-22 85.9
Msa1349080 MtrunA17_Chr2g0333981 53.521 71 33 0 1 71 11 81 1.03e-21 86.7
Msa1349080 MtrunA17_Chr2g0300441 41.525 118 64 2 2 117 9 123 1.74e-21 87.4
Msa1349080 MtrunA17_Chr1g0187361 55.072 69 31 0 2 70 9 77 1.99e-21 87.0
Msa1349080 MtrunA17_Chr8g0379021 43.243 111 56 3 2 110 12 117 3.04e-21 85.1
Msa1349080 MtrunA17_Chr2g0317481 52.113 71 34 0 2 72 9 79 5.51e-21 85.9
Msa1349080 MtrunA17_Chr2g0317451 52.113 71 34 0 2 72 9 79 5.63e-21 85.9
Msa1349080 MtrunA17_Chr5g0422941 50.725 69 34 0 2 70 9 77 8.98e-20 82.8
Msa1349080 MtrunA17_Chr4g0020221 50.704 71 35 0 1 71 1 71 2.49e-19 82.0
Msa1349080 MtrunA17_Chr1g0206691 47.059 85 43 1 18 100 8 92 2.23e-18 79.0
Msa1349080 MtrunA17_Chr4g0018951 56.140 57 25 0 14 70 24 80 2.32e-18 77.4
Msa1349080 MtrunA17_Chr2g0279821 40.909 110 64 1 1 110 1 109 4.10e-18 78.6
Msa1349080 MtrunA17_Chr1g0187351 62.264 53 20 0 18 70 8 60 4.32e-18 74.3
Msa1349080 MtrunA17_Chr7g0238991 62.069 58 22 0 13 70 32 89 6.78e-18 78.2
Msa1349080 MtrunA17_Chr5g0427921 55.000 60 27 0 1 60 1 60 1.26e-17 72.8
Msa1349080 MtrunA17_Chr8g0351041 41.667 96 54 1 1 96 1 94 1.76e-17 75.1
Msa1349080 MtrunA17_Chr3g0097101 41.346 104 57 1 1 100 16 119 1.78e-17 77.0
Msa1349080 MtrunA17_Chr5g0427401 47.826 69 36 0 1 69 1 69 2.25e-17 76.3
Msa1349080 MtrunA17_Chr1g0173161 55.000 60 27 0 1 60 1 60 3.64e-17 72.0
Msa1349080 MtrunA17_Chr4g0049541 48.611 72 37 0 1 72 1 72 5.85e-17 75.1
Msa1349080 MtrunA17_Chr3g0077501 49.296 71 36 0 1 71 1 71 6.69e-17 75.1
Msa1349080 MtrunA17_Chr8g0351031 41.667 96 54 1 1 96 1 94 1.09e-16 74.3
Msa1349080 MtrunA17_Chr8g0351051 49.275 69 35 0 1 69 1 69 1.13e-16 74.7
Msa1349080 MtrunA17_Chr2g0284911 50.704 71 35 0 1 71 16 86 1.33e-16 74.7
Msa1349080 MtrunA17_Chr4g0071601 52.113 71 34 0 1 71 11 81 2.59e-16 72.8
Msa1349080 MtrunA17_Chr7g0246431 35.714 112 55 2 1 105 1 102 3.42e-16 72.8
Msa1349080 MtrunA17_Chr4g0057151 47.826 69 36 0 1 69 1 69 4.42e-16 72.4
Msa1349080 MtrunA17_Chr8g0380021 49.296 71 36 0 1 71 17 87 5.85e-16 72.8
Msa1349080 MtrunA17_Chr3g0111841 50.000 58 29 0 8 65 2 59 6.89e-16 68.6
Msa1349080 MtrunA17_Chr5g0411691 47.826 69 36 0 1 69 1 69 7.75e-16 72.4
Msa1349080 MtrunA17_Chr1g0204111 47.826 69 36 0 1 69 17 85 1.55e-15 71.6
Msa1349080 MtrunA17_Chr4g0049901 47.692 65 34 0 1 65 27 91 1.58e-15 71.6
Msa1349080 MtrunA17_Chr5g0404951 50.000 62 31 0 1 62 1 62 1.60e-15 71.2
Msa1349080 MtrunA17_Chr4g0061691 38.889 90 52 2 1 89 1 88 3.16e-15 70.5
Msa1349080 MtrunA17_Chr2g0308251 41.096 73 42 1 1 72 1 73 3.19e-15 67.0
Msa1349080 MtrunA17_Chr1g0164791 38.889 90 53 1 1 88 1 90 3.23e-15 70.5
Msa1349080 MtrunA17_Chr3g0142191 48.438 64 33 0 1 64 1 64 3.57e-15 70.5
Msa1349080 MtrunA17_Chr4g0044071 55.769 52 23 0 1 52 1 52 3.81e-15 67.8
Msa1349080 MtrunA17_Chr5g0425191 56.863 51 22 0 1 51 1 51 3.89e-15 67.4
Msa1349080 MtrunA17_Chr5g0420091 52.632 57 27 0 1 57 1 57 5.07e-15 69.7
Msa1349080 MtrunA17_Chr5g0412271 52.632 57 27 0 1 57 1 57 7.18e-15 69.7
Msa1349080 MtrunA17_Chr5g0420081 50.877 57 28 0 1 57 1 57 7.43e-15 69.7
Msa1349080 MtrunA17_Chr1g0159661 37.975 79 47 1 1 77 1 79 8.43e-15 68.6
Msa1349080 MtrunA17_Chr5g0412461 52.632 57 27 0 1 57 1 57 8.52e-15 69.3
Msa1349080 MtrunA17_Chr7g0220121 31.579 114 72 2 1 113 1 109 9.95e-15 69.7
Msa1349080 MtrunA17_Chr8g0377561 52.632 57 27 0 1 57 1 57 1.09e-14 66.2
Msa1349080 MtrunA17_Chr5g0417661 50.000 54 27 0 1 54 56 109 2.43e-14 66.2
Msa1349080 MtrunA17_Chr7g0220111 52.632 57 27 0 1 57 1 57 2.46e-14 68.6
Msa1349080 MtrunA17_Chr8g0366231 50.000 58 29 0 1 58 1 58 2.58e-14 68.2
Msa1349080 MtrunA17_Chr7g0246381 44.928 69 33 1 1 64 1 69 2.73e-14 64.3
Msa1349080 MtrunA17_Chr3g0125241 41.538 65 38 0 1 65 26 90 2.99e-14 67.4
Msa1349080 MtrunA17_Chr4g0061671 50.000 58 29 0 1 58 1 58 3.36e-14 67.0
Msa1349080 MtrunA17_Chr3g0134451 43.836 73 40 1 1 72 1 73 4.99e-14 68.2
Msa1349080 MtrunA17_Chr3g0122251 54.386 57 26 0 1 57 1 57 5.21e-14 67.4
Msa1349080 MtrunA17_Chr4g0018421 45.205 73 39 1 1 72 1 73 8.60e-14 66.2
Msa1349080 MtrunA17_Chr6g0455511 52.632 57 27 0 1 57 1 57 8.80e-14 67.0
Msa1349080 MtrunA17_Chr6g0474371 50.000 58 29 0 1 58 1 58 8.88e-14 65.9
Msa1349080 MtrunA17_Chr3g0111931 52.830 53 25 0 18 70 6 58 1.42e-13 63.5
Msa1349080 MtrunA17_Chr1g0166611 65.909 44 15 0 15 58 19 62 3.15e-13 63.2
Msa1349080 MtrunA17_Chr3g0111831 50.000 52 26 0 18 69 20 71 6.71e-12 58.5
Msa1349080 MtrunA17_Chr8g0345001 42.647 68 39 0 3 70 19 86 6.95e-12 60.8
Msa1349080 MtrunA17_Chr4g0060841 46.296 54 29 0 1 54 1 54 9.83e-12 62.0
Msa1349080 MtrunA17_Chr2g0283941 34.831 89 55 2 1 86 1 89 3.35e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1349080 AT2G34440.1 44.444 171 85 4 1 161 1 171 1.07e-37 127
Msa1349080 AT3G66656.1 39.891 183 83 5 1 162 1 177 1.36e-32 114
Msa1349080 AT2G24840.1 42.742 124 65 2 1 121 62 182 1.82e-28 106
Msa1349080 AT5G60440.1 45.324 139 51 3 2 127 7 133 1.62e-26 102
Msa1349080 AT1G01530.1 40.288 139 79 2 1 139 6 140 5.16e-23 92.0
Msa1349080 AT1G65360.1 40.708 113 64 1 1 113 6 115 1.33e-21 87.8
Msa1349080 AT1G47760.1 56.061 66 28 1 1 65 1 66 4.78e-20 82.8
Msa1349080 AT4G36590.1 33.735 166 88 4 2 160 7 157 1.52e-19 82.8
Msa1349080 AT4G37940.1 40.909 110 64 1 1 110 1 109 1.86e-19 82.0
Msa1349080 AT4G37940.4 40.909 110 64 1 1 110 1 109 2.17e-19 81.6
Msa1349080 AT4G37940.3 40.909 110 64 1 1 110 1 109 3.05e-19 80.5
Msa1349080 AT5G13790.2 52.174 69 33 0 1 69 1 69 4.15e-19 82.0
Msa1349080 AT5G13790.1 52.174 69 33 0 1 69 1 69 4.41e-19 82.0
Msa1349080 AT3G61120.1 49.315 73 37 0 1 73 1 73 4.78e-19 81.3
Msa1349080 AT3G57230.2 50.725 69 34 0 1 69 1 69 9.64e-19 78.2
Msa1349080 AT3G57230.1 50.725 69 34 0 1 69 1 69 3.92e-18 79.0
Msa1349080 AT3G57230.4 50.725 69 34 0 1 69 1 69 3.92e-18 79.0
Msa1349080 AT2G45660.2 37.037 108 65 1 1 108 1 105 5.51e-18 76.6
Msa1349080 AT4G22950.2 41.304 92 50 1 1 92 1 88 7.04e-18 76.6
Msa1349080 AT3G57390.3 49.275 69 35 0 1 69 1 69 1.25e-17 77.4
Msa1349080 AT2G45660.1 37.037 108 65 1 1 108 1 105 2.34e-17 76.3
Msa1349080 AT4G09960.1 50.704 71 35 0 1 71 1 71 2.36e-17 76.6
Msa1349080 AT4G09960.6 50.704 71 35 0 1 71 2 72 2.42e-17 76.6
Msa1349080 AT4G09960.2 50.704 71 35 0 1 71 1 71 2.53e-17 76.3
Msa1349080 AT3G57390.1 49.275 69 35 0 1 69 1 69 2.56e-17 77.0
Msa1349080 AT2G22630.1 46.667 75 40 0 1 75 1 75 2.86e-17 76.3
Msa1349080 AT2G22630.2 46.667 75 40 0 1 75 1 75 2.86e-17 76.3
Msa1349080 AT4G09960.5 50.704 71 35 0 1 71 11 81 3.13e-17 76.6
Msa1349080 AT4G24540.1 38.947 95 57 1 1 95 1 94 4.15e-17 75.9
Msa1349080 AT4G09960.4 50.704 71 35 0 1 71 96 166 4.49e-17 77.4
Msa1349080 AT3G04100.1 47.692 65 34 0 2 66 14 78 4.63e-17 75.5
Msa1349080 AT4G09960.3 50.704 71 35 0 1 71 27 97 4.79e-17 76.3
Msa1349080 AT1G72350.1 54.286 70 30 1 2 71 43 110 5.13e-17 75.5
Msa1349080 AT2G45650.1 49.275 69 35 0 1 69 1 69 6.58e-17 75.9
Msa1349080 AT4G22950.3 41.304 92 50 1 1 92 1 88 7.25e-17 75.1
Msa1349080 AT4G22950.1 41.304 92 50 1 1 92 1 88 7.25e-17 75.1
Msa1349080 AT2G14210.1 47.297 74 38 1 1 73 1 74 1.38e-16 74.7
Msa1349080 AT1G29962.1 44.928 69 38 0 2 70 8 76 1.43e-16 73.6
Msa1349080 AT2G14210.2 47.297 74 38 1 1 73 1 74 1.67e-16 74.3
Msa1349080 AT1G28460.1 44.928 69 38 0 2 70 8 76 2.22e-16 73.2
Msa1349080 AT5G20240.2 44.304 79 42 1 1 77 1 79 3.22e-16 72.0
Msa1349080 AT3G54340.1 40.909 88 37 1 1 73 1 88 3.98e-16 73.6
Msa1349080 AT5G10140.2 54.386 57 26 0 1 57 1 57 5.74e-16 71.6
Msa1349080 AT5G51870.2 45.833 72 39 0 1 72 1 72 6.16e-16 71.6
Msa1349080 AT5G51860.2 46.575 73 39 0 1 73 1 73 6.49e-16 72.4
Msa1349080 AT5G51860.1 36.190 105 65 1 1 105 1 103 7.04e-16 72.4
Msa1349080 AT5G51870.1 45.833 72 39 0 1 72 1 72 7.38e-16 72.4
Msa1349080 AT2G22540.3 42.308 104 41 3 1 99 1 90 8.21e-16 72.8
Msa1349080 AT2G22540.1 42.308 104 41 3 1 99 1 90 8.21e-16 72.8
Msa1349080 AT1G46408.1 48.684 76 33 2 1 70 1 76 8.34e-16 73.2
Msa1349080 AT5G20240.1 44.304 79 42 1 1 77 1 79 8.87e-16 72.0
Msa1349080 AT5G10140.3 53.448 58 27 0 1 58 1 58 8.90e-16 71.6
Msa1349080 AT5G65070.4 50.000 58 29 0 1 58 1 58 9.06e-16 70.5
Msa1349080 AT5G51870.5 45.833 72 39 0 1 72 24 95 9.56e-16 71.6
Msa1349080 AT5G10140.4 54.386 57 26 0 1 57 1 57 9.96e-16 71.2
Msa1349080 AT2G42830.1 49.296 71 36 0 1 71 16 86 1.04e-15 72.4
Msa1349080 AT2G42830.2 49.296 71 36 0 1 71 16 86 1.15e-15 72.4
Msa1349080 AT4G11880.2 55.172 58 26 0 1 58 1 58 1.15e-15 71.2
Msa1349080 AT4G11880.3 55.172 58 26 0 1 58 1 58 1.15e-15 71.2
Msa1349080 AT5G51870.4 45.833 72 39 0 1 72 1 72 1.21e-15 72.0
Msa1349080 AT5G10140.1 54.386 57 26 0 1 57 1 57 1.26e-15 71.2
Msa1349080 AT3G58780.1 49.296 71 36 0 1 71 16 86 1.58e-15 72.0
Msa1349080 AT5G51870.3 45.833 72 39 0 1 72 11 82 1.74e-15 71.6
Msa1349080 AT3G58780.5 49.296 71 36 0 1 71 22 92 1.81e-15 72.0
Msa1349080 AT3G58780.4 49.296 71 36 0 1 71 16 86 2.35e-15 72.0
Msa1349080 AT1G77980.1 44.578 83 44 2 1 81 1 83 2.44e-15 72.4
Msa1349080 AT5G65070.1 50.000 58 29 0 1 58 1 58 2.51e-15 70.5
Msa1349080 AT4G11880.4 55.172 58 26 0 1 58 1 58 2.93e-15 70.9
Msa1349080 AT4G11880.1 55.172 58 26 0 1 58 1 58 2.93e-15 70.9
Msa1349080 AT4G18960.1 38.835 103 59 1 2 100 18 120 3.07e-15 71.2
Msa1349080 AT1G77950.3 44.578 83 44 2 1 81 1 83 3.33e-15 71.2
Msa1349080 AT1G77950.2 44.578 83 44 2 1 81 1 83 3.33e-15 71.2
Msa1349080 AT1G77950.1 44.578 83 44 2 1 81 1 83 3.33e-15 71.2
Msa1349080 AT1G77950.4 44.578 83 44 2 1 81 1 83 3.33e-15 71.2
Msa1349080 AT3G30260.1 54.386 57 26 0 1 57 1 57 3.48e-15 71.2
Msa1349080 AT5G65070.3 47.692 65 32 1 1 63 1 65 4.23e-15 70.5
Msa1349080 AT5G65070.2 50.000 58 29 0 1 58 1 58 6.57e-15 70.1
Msa1349080 AT5G65070.5 50.000 58 29 0 1 58 1 58 7.64e-15 69.7
Msa1349080 AT2G22540.2 60.000 50 20 0 1 50 1 50 7.93e-15 70.1
Msa1349080 AT1G71692.1 47.222 72 37 1 1 71 1 72 8.35e-15 69.3
Msa1349080 AT5G62165.17 42.254 71 41 0 1 71 1 71 8.65e-15 68.2
Msa1349080 AT5G62165.12 42.254 71 41 0 1 71 1 71 8.65e-15 68.2
Msa1349080 AT5G62165.11 42.254 71 41 0 1 71 1 71 8.65e-15 68.2
Msa1349080 AT1G22130.1 45.205 73 39 1 1 72 1 73 1.15e-14 70.5
Msa1349080 AT3G58780.2 54.237 59 27 0 1 59 16 74 1.24e-14 69.7
Msa1349080 AT5G62165.6 42.254 71 41 0 1 71 1 71 1.28e-14 67.8
Msa1349080 AT5G62165.9 42.254 71 41 0 1 71 1 71 1.28e-14 67.8
Msa1349080 AT5G62165.7 42.254 71 41 0 1 71 1 71 1.28e-14 67.8
Msa1349080 AT5G62165.8 42.254 71 41 0 1 71 1 71 1.28e-14 67.8
Msa1349080 AT5G62165.13 42.254 71 41 0 1 71 1 71 1.28e-14 67.8
Msa1349080 AT3G58780.3 54.237 59 27 0 1 59 16 74 1.40e-14 69.7
Msa1349080 AT1G69120.2 61.224 49 19 0 1 49 1 49 2.06e-14 68.9
Msa1349080 AT2G03710.3 52.632 57 27 0 1 57 1 57 2.55e-14 67.8
Msa1349080 AT5G62165.14 42.254 71 41 0 1 71 1 71 2.65e-14 65.9
Msa1349080 AT5G62165.10 42.254 71 41 0 1 71 1 71 2.80e-14 67.8
Msa1349080 AT5G62165.4 42.254 71 41 0 1 71 1 71 2.80e-14 67.8
Msa1349080 AT5G62165.3 42.254 71 41 0 1 71 1 71 2.82e-14 68.2
Msa1349080 AT5G62165.1 42.254 71 41 0 1 71 1 71 2.82e-14 68.2
Msa1349080 AT5G62165.2 42.254 71 41 0 1 71 1 71 2.82e-14 68.2
Msa1349080 AT5G60910.1 50.877 57 28 0 1 57 1 57 2.97e-14 68.6
Msa1349080 AT1G69120.1 61.224 49 19 0 1 49 1 49 3.54e-14 68.6
Msa1349080 AT1G26310.1 59.184 49 20 0 1 49 1 49 4.56e-14 68.2
Msa1349080 AT5G65060.3 50.909 55 27 0 1 55 1 55 6.22e-14 66.6
Msa1349080 AT5G15800.1 52.632 57 27 0 1 57 1 57 6.48e-14 67.8
Msa1349080 AT5G23260.3 59.184 49 20 0 1 49 1 49 7.02e-14 67.4
Msa1349080 AT5G23260.2 59.184 49 20 0 1 49 1 49 7.10e-14 67.8
Msa1349080 AT3G02310.2 52.632 57 27 0 1 57 1 57 8.43e-14 66.6
Msa1349080 AT5G15800.2 52.632 57 27 0 1 57 1 57 9.20e-14 67.4
Msa1349080 AT5G23260.1 59.184 49 20 0 1 49 17 65 9.29e-14 67.4
Msa1349080 AT1G17310.1 52.857 70 31 1 2 71 48 115 9.53e-14 66.6
Msa1349080 AT5G23260.4 59.184 49 20 0 1 49 17 65 9.56e-14 67.4
Msa1349080 AT1G24260.3 52.632 57 27 0 1 57 1 57 1.00e-13 67.0
Msa1349080 AT5G65060.2 50.909 55 27 0 1 55 1 55 1.04e-13 66.2
Msa1349080 AT1G17310.2 52.857 70 31 1 2 71 59 126 1.05e-13 66.6
Msa1349080 AT1G24260.1 52.632 57 27 0 1 57 1 57 1.19e-13 67.0
Msa1349080 AT1G24260.2 52.632 57 27 0 1 57 1 57 1.20e-13 67.0
Msa1349080 AT5G65060.1 50.909 55 27 0 1 55 1 55 1.22e-13 66.2
Msa1349080 AT2G03710.2 43.750 80 43 1 1 78 1 80 1.26e-13 67.0
Msa1349080 AT2G03710.1 43.750 80 43 1 1 78 1 80 1.27e-13 67.0
Msa1349080 AT4G37435.1 29.605 152 85 5 1 151 1 131 1.29e-13 65.9
Msa1349080 AT3G02310.1 52.632 57 27 0 1 57 1 57 1.41e-13 66.6
Msa1349080 AT5G65050.2 49.091 55 28 0 1 55 1 55 1.42e-13 65.5
Msa1349080 AT5G65080.3 49.091 55 28 0 1 55 8 62 2.63e-13 65.1
Msa1349080 AT5G65080.2 49.091 55 28 0 1 55 8 62 3.04e-13 65.1
Msa1349080 AT5G65050.1 49.091 55 28 0 1 55 1 55 3.36e-13 64.7
Msa1349080 AT5G65050.5 49.091 55 28 0 1 55 1 55 3.46e-13 64.7
Msa1349080 AT1G28450.1 30.303 165 91 5 2 146 8 168 3.80e-13 64.7
Msa1349080 AT5G65050.3 49.091 55 28 0 1 55 1 55 3.86e-13 64.7
Msa1349080 AT1G18750.3 40.541 74 42 1 1 72 1 74 4.31e-13 66.2
Msa1349080 AT1G18750.4 40.541 74 42 1 1 72 1 74 4.48e-13 66.2
Msa1349080 AT1G18750.1 40.541 74 42 1 1 72 1 74 4.84e-13 66.2
Msa1349080 AT1G69540.1 43.836 73 40 1 1 72 1 73 8.15e-13 65.5
Msa1349080 AT1G69540.2 43.836 73 40 1 1 72 1 73 8.48e-13 65.5
Msa1349080 AT2G03060.3 52.000 50 24 0 1 50 1 50 2.26e-12 64.3
Msa1349080 AT2G03060.7 52.000 50 24 0 1 50 1 50 2.26e-12 64.3
Msa1349080 AT2G03060.1 52.000 50 24 0 1 50 1 50 2.26e-12 64.3
Msa1349080 AT2G03060.2 52.000 50 24 0 1 50 1 50 2.56e-12 64.3
Msa1349080 AT2G26320.1 43.103 58 33 0 1 58 17 74 2.78e-12 60.5
Msa1349080 AT5G49490.1 43.056 72 37 1 3 70 46 117 3.29e-12 63.5
Msa1349080 AT1G60920.1 42.466 73 37 2 3 70 5 77 5.11e-12 61.6
Msa1349080 AT5G38620.1 40.000 75 41 1 3 73 6 80 1.78e-11 61.6
Msa1349080 AT5G49420.1 39.726 73 40 1 3 71 8 80 2.47e-11 61.2
Msa1349080 AT1G77080.11 64.103 39 14 0 1 39 1 39 5.00e-11 58.5
Msa1349080 AT1G77080.12 64.103 39 14 0 1 39 1 39 5.98e-11 57.8
Msa1349080 AT1G77080.5 64.103 39 14 0 1 39 1 39 6.17e-11 58.5
Msa1349080 AT1G65300.1 36.782 87 52 3 3 86 2 88 8.48e-11 59.3
Msa1349080 AT1G77080.4 64.103 39 14 0 1 39 1 39 9.79e-11 58.2

Find 28 sgRNAs with CRISPR-Local

Find 33 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGAACAATCCTTATTCTTT+TGG 0.240671 tig0010653:+56584 Msa1349080:CDS
CTCATCTTATTCTCCGAATA+TGG 0.246894 tig0010653:+56682 Msa1349080:CDS
CCTGGGTGACCAAAAGAATA+AGG 0.337629 tig0010653:-56593 None:intergenic
CTAGAACTTGTTGAGGTGTT+GGG 0.408328 tig0010653:+56716 Msa1349080:CDS
ATAAGATGAGGAGTTTACTA+TGG 0.410961 tig0010653:-56669 None:intergenic
GCTATTGTTGTGTTCTCTCC+AGG 0.420934 tig0010653:+56563 Msa1349080:CDS
AAGCTTTAGTTTCAAATACT+TGG 0.421254 tig0010653:-56633 None:intergenic
GCAGCAACAACATCAACTCC+TGG 0.473203 tig0010653:-56611 None:intergenic
TTTAGCTCGGGATCCAGTTG+TGG 0.482217 tig0010653:+56907 Msa1349080:CDS
TTAGCTCGGGATCCAGTTGT+GGG 0.485243 tig0010653:+56908 Msa1349080:CDS
CACTTTCTCAAAGCGTCGGA+CGG 0.493597 tig0010653:+56490 Msa1349080:CDS
ACTTTCTCAAAGCGTCGGAC+GGG 0.513626 tig0010653:+56491 Msa1349080:CDS
CTCTCAATTCTTTAAGCTCG+AGG 0.514790 tig0010653:-56811 None:intergenic
TCTAGAACTTGTTGAGGTGT+TGG 0.548141 tig0010653:+56715 Msa1349080:CDS
GAAAGACTCCAACACGAGGC+AGG 0.554822 tig0010653:+56466 Msa1349080:CDS
CTATTGTTGTGTTCTCTCCA+GGG 0.556447 tig0010653:+56564 Msa1349080:CDS
AAAGAATAAGGATTGTTCCC+TGG 0.565551 tig0010653:-56581 None:intergenic
GTCGCAAAATTAAAATAGAG+AGG 0.572448 tig0010653:+56441 Msa1349080:CDS
ATTGAATCTAGAACTTGTTG+AGG 0.572715 tig0010653:+56709 Msa1349080:CDS
CAGCAACAACATCAACTCCT+GGG 0.611229 tig0010653:-56610 None:intergenic
TCGCAAAATTAAAATAGAGA+GGG 0.620927 tig0010653:+56442 Msa1349080:CDS
GAAAGTGACCTGCCTCGTGT+TGG 0.631102 tig0010653:-56474 None:intergenic
AGGTCACTTTCTCAAAGCGT+CGG 0.635421 tig0010653:+56486 Msa1349080:CDS
GACTTCAGCTCCGCACAACA+TGG 0.644720 tig0010653:-56540 None:intergenic
GTGTTGGGACAAGTTCAAGA+AGG 0.657260 tig0010653:+56731 Msa1349080:CDS
CATATTCGGAGAATAAGATG+AGG 0.677681 tig0010653:-56681 None:intergenic
AATGAATTGTCCATGTTGTG+CGG 0.683772 tig0010653:+56530 Msa1349080:CDS
GGGTGAAAGACTCCAACACG+AGG 0.715970 tig0010653:+56462 Msa1349080:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGATTCAATTTTTCCATATT+CGG - tig0010653:56698-56717 None:intergenic 20.0%
! TCGCAAAATTAAAATAGAGA+GGG + tig0010653:56442-56461 Msa1349080:CDS 25.0%
!! AAGCTTTAGTTTCAAATACT+TGG - tig0010653:56636-56655 None:intergenic 25.0%
GTCGCAAAATTAAAATAGAG+AGG + tig0010653:56441-56460 Msa1349080:CDS 30.0%
ATAAGATGAGGAGTTTACTA+TGG - tig0010653:56672-56691 None:intergenic 30.0%
!! ATTGAATCTAGAACTTGTTG+AGG + tig0010653:56709-56728 Msa1349080:CDS 30.0%
!! AATGTTTGATGCTTTTAGCT+CGG + tig0010653:56894-56913 Msa1349080:CDS 30.0%
AATGAATTGTCCATGTTGTG+CGG + tig0010653:56530-56549 Msa1349080:CDS 35.0%
AAAGAATAAGGATTGTTCCC+TGG - tig0010653:56584-56603 None:intergenic 35.0%
! GGGAACAATCCTTATTCTTT+TGG + tig0010653:56584-56603 Msa1349080:CDS 35.0%
CATATTCGGAGAATAAGATG+AGG - tig0010653:56684-56703 None:intergenic 35.0%
CTCATCTTATTCTCCGAATA+TGG + tig0010653:56682-56701 Msa1349080:CDS 35.0%
!!! ATGTTTGATGCTTTTAGCTC+GGG + tig0010653:56895-56914 Msa1349080:CDS 35.0%
! TACTCTTTTATTCCCACAAC+TGG - tig0010653:56923-56942 None:intergenic 35.0%
CTATTGTTGTGTTCTCTCCA+GGG + tig0010653:56564-56583 Msa1349080:CDS 40.0%
!! TCTAGAACTTGTTGAGGTGT+TGG + tig0010653:56715-56734 Msa1349080:CDS 40.0%
!! CTAGAACTTGTTGAGGTGTT+GGG + tig0010653:56716-56735 Msa1349080:CDS 40.0%
CTCTCAATTCTTTAAGCTCG+AGG - tig0010653:56814-56833 None:intergenic 40.0%
! AGGTCACTTTCTCAAAGCGT+CGG + tig0010653:56486-56505 Msa1349080:CDS 45.0%
GCTATTGTTGTGTTCTCTCC+AGG + tig0010653:56563-56582 Msa1349080:CDS 45.0%
CCTGGGTGACCAAAAGAATA+AGG - tig0010653:56596-56615 None:intergenic 45.0%
! CCTTATTCTTTTGGTCACCC+AGG + tig0010653:56593-56612 Msa1349080:CDS 45.0%
CAGCAACAACATCAACTCCT+GGG - tig0010653:56613-56632 None:intergenic 45.0%
GTGTTGGGACAAGTTCAAGA+AGG + tig0010653:56731-56750 Msa1349080:CDS 45.0%
!! CACTTTCTCAAAGCGTCGGA+CGG + tig0010653:56490-56509 Msa1349080:CDS 50.0%
!! ACTTTCTCAAAGCGTCGGAC+GGG + tig0010653:56491-56510 Msa1349080:CDS 50.0%
GCAGCAACAACATCAACTCC+TGG - tig0010653:56614-56633 None:intergenic 50.0%
! TTTAGCTCGGGATCCAGTTG+TGG + tig0010653:56907-56926 Msa1349080:CDS 50.0%
TTAGCTCGGGATCCAGTTGT+GGG + tig0010653:56908-56927 Msa1349080:CDS 50.0%
GGGTGAAAGACTCCAACACG+AGG + tig0010653:56462-56481 Msa1349080:CDS 55.0%
GAAAGACTCCAACACGAGGC+AGG + tig0010653:56466-56485 Msa1349080:CDS 55.0%
GAAAGTGACCTGCCTCGTGT+TGG - tig0010653:56477-56496 None:intergenic 55.0%
GACTTCAGCTCCGCACAACA+TGG - tig0010653:56543-56562 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
tig0010653 gene 56434 56943 56434 ID=Msa1349080;Name=Msa1349080
tig0010653 mRNA 56434 56943 56434 ID=Msa1349080-mRNA-1;Parent=Msa1349080;Name=Msa1349080-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|-1|0|1|-1|1|1|0|169
tig0010653 exon 56434 56943 56434 ID=Msa1349080-mRNA-1:exon:6682;Parent=Msa1349080-mRNA-1
tig0010653 CDS 56434 56943 56434 ID=Msa1349080-mRNA-1:cds;Parent=Msa1349080-mRNA-1
Gene Sequence

>Msa1349080

ATGGGTCGTCGCAAAATTAAAATAGAGAGGGTGAAAGACTCCAACACGAGGCAGGTCACTTTCTCAAAGCGTCGGACGGGCTTATTCAAGAAAGCAAATGAATTGTCCATGTTGTGCGGAGCTGAAGTCGCTATTGTTGTGTTCTCTCCAGGGAACAATCCTTATTCTTTTGGTCACCCAGGAGTTGATGTTGTTGCTGCCAAGTATTTGAAACTAAAGCTTAAACGCATGAATTCCATAGTAAACTCCTCATCTTATTCTCCGAATATGGAAAAATTGAATCTAGAACTTGTTGAGGTGTTGGGACAAGTTCAAGAAGGTGAAAAGCAAGCTAAGAATCATGATGAGATTCTGAAGCAAAACAACGTGACAAAACTCCTCGAGCTTAAAGAATTGAGAGATTCATATAAAGAGCTTCAAGATTGCATAAAATTGCGTCTTAGTGATATCGAGATATCAGAATGTTTGATGCTTTTAGCTCGGGATCCAGTTGTGGGAATAAAAGAGTAA
Protein sequence

>Msa1349080

MGRRKIKIERVKDSNTRQVTFSKRRTGLFKKANELSMLCGAEVAIVVFSPGNNPYSFGHPGVDVVAAKYLKLKLKRMNSIVNSSSYSPNMEKLNLELVEVLGQVQEGEKQAKNHDEILKQNNVTKLLELKELRDSYKELQDCIKLRLSDIEISECLMLLARDPVVGIKE*