AlfalfaGEDB | Msa1349130

M. sativa cultivar zhongmu-4 / Msa1349130

KEGG: K09260
GO: GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009553 GO:0009559 GO:0009561 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00319.21

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1349130	XP_039686560.1	95.000	180	8	1	1	179	1	180	5.33e-118	342

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1349130	sp\|O64703\|AGL29_ARATH	43.103	174	83	4	1	161	1	171	1.21e-34	122

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1349130	A0A396JLY3	95.000	180	8	1	1	179	1	180	2.54e-118	342

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa1349130	TF	MADS-M-type

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1349130	MtrunA17_Chr1g0175601	95.000	180	8	1	1	179	1	180	4.90e-122	342
Msa1349130	MtrunA17_Chr1g0180591	80.447	179	35	0	1	179	1	179	1.52e-103	295
Msa1349130	MtrunA17_Chr1g0175611	84.524	168	26	0	1	168	1	168	2.15e-101	289
Msa1349130	MtrunA17_Chr1g0169761	78.771	179	38	0	1	179	1	179	2.57e-101	289
Msa1349130	MtrunA17_Chr4g0074101	70.408	196	41	1	1	179	1	196	5.05e-95	274
Msa1349130	MtrunA17_Chr8g0376821	78.916	166	35	0	1	166	1	166	4.88e-92	266
Msa1349130	MtrunA17_Chr8g0357771	58.286	175	73	0	1	175	1	175	7.86e-69	207
Msa1349130	MtrunA17_Chr8g0356071	52.381	168	74	2	1	168	1	162	3.91e-53	166
Msa1349130	MtrunA17_Chr4g0052061	39.634	164	87	3	1	164	1	152	1.14e-30	109
Msa1349130	MtrunA17_Chr3g0099411	42.029	138	77	2	2	136	9	146	1.12e-29	108

Showing 1 to 10 of 91 entries

Previous1 2 3 4 5…10Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1349130	AT2G34440.1	43.103	174	83	4	1	161	1	171	1.23e-35	122
Msa1349130	AT3G66656.1	74.242	66	17	0	1	66	1	66	2.79e-31	112
Msa1349130	AT2G24840.1	40.800	125	66	2	1	121	62	182	4.84e-28	105
Msa1349130	AT5G60440.1	40.127	157	75	3	2	154	7	148	9.94e-27	103
Msa1349130	AT1G01530.1	41.727	139	77	2	1	139	6	140	5.03e-26	100
Msa1349130	AT1G65360.1	38.053	113	70	0	1	113	6	118	4.03e-22	89.4
Msa1349130	AT3G57230.2	34.177	158	91	5	1	158	1	145	4.79e-20	82.0
Msa1349130	AT1G47760.1	42.000	100	46	2	1	100	1	88	1.16e-19	82.0
Msa1349130	AT5G13790.2	43.564	101	45	2	1	100	1	90	1.75e-19	83.2
Msa1349130	AT3G57230.1	33.136	169	100	5	1	169	1	156	2.58e-19	82.4

Showing 1 to 10 of 144 entries

Previous1 2 3 4 5…15Next

Find 30 sgRNAs with CRISPR-Local

Find 36 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAGTAAGGATTGTCACC+TGG	0.657655	tig0010653:-108074	None:intergenic
ACATTCTCAAAGCGTCGGAC+GGG	0.532546	tig0010653:+107984	Msa1349130:CDS
AGGCTTTAGTCCAAGGTGCT+TGG	0.485644	tig0010653:-108126	None:intergenic
AGGTCACATTCTCAAAGCGT+CGG	0.637904	tig0010653:+107979	Msa1349130:CDS
ATATTGGAAGAATCAGAAGA+GGG	0.595456	tig0010653:-108173	None:intergenic
ATGTATGATGCTTCTAGCTC+AGG	0.444160	tig0010653:+108388	Msa1349130:CDS
CACATTCTCAAAGCGTCGGA+CGG	0.538823	tig0010653:+107983	Msa1349130:CDS
CAGCAACAACATCAACTCCT+GGG	0.611229	tig0010653:-108103	None:intergenic
CATATTGGAAGAATCAGAAG+AGG	0.623619	tig0010653:-108174	None:intergenic
CCTAAACGTAGGAACTCTGA+AGG	0.584431	tig0010653:+108146	Msa1349130:CDS

Showing 1 to 10 of 30 entries

Previous1 2 3Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TCGCAAAATTAAGATTGAGA+GGG	+	tig0010653:107935-107954	Msa1349130:CDS	30.0%
ATATTGGAAGAATCAGAAGA+GGG	-	tig0010653:108176-108195	None:intergenic	30.0%
GTCGCAAAATTAAGATTGAG+AGG	+	tig0010653:107934-107953	Msa1349130:CDS	35.0%
TATTGGAAGAATCAGAAGAG+GGG	-	tig0010653:108175-108194	None:intergenic	35.0%
CATATTGGAAGAATCAGAAG+AGG	-	tig0010653:108177-108196	None:intergenic	35.0%
CTCTTCTGATTCTTCCAATA+TGG	+	tig0010653:108175-108194	Msa1349130:CDS	35.0%
AAAGAGTAAGGATTGTCACC+TGG	-	tig0010653:108077-108096	None:intergenic	40.0%
TTGGACTAAAGCCTAAACGT+AGG	+	tig0010653:108135-108154	Msa1349130:CDS	40.0%
AGGTCACATTCTCAAAGCGT+CGG	+	tig0010653:107979-107998	Msa1349130:CDS	45.0%
GCTATTGTTGTGTTCTCTCC+AGG	+	tig0010653:108056-108075	Msa1349130:CDS	45.0%

Showing 1 to 10 of 36 entries

Previous1 2 3 4Next

Chromosome	Type	Strat	End	Strand	Name
tig0010653	gene	107927	108466	107927	ID=Msa1349130;Name=Msa1349130
tig0010653	mRNA	107927	108466	107927	ID=Msa1349130-mRNA-1;Parent=Msa1349130;Name=Msa1349130-mRNA-1;_AED=0.10;_eAED=0.11;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|179
tig0010653	exon	107927	108466	107927	ID=Msa1349130-mRNA-1:exon:6683;Parent=Msa1349130-mRNA-1
tig0010653	CDS	107927	108466	107927	ID=Msa1349130-mRNA-1:cds;Parent=Msa1349130-mRNA-1

Gene Sequence

>Msa1349130

ATGGGTCGTCGCAAAATTAAGATTGAGAGGGTGAAAGACTCCAACACGAGGCAGGTCACATTCTCAAAGCGTCGGACGGGCTTATTCAAGAAAGCAAATGAATTGTCGATTTTGTGCGGAGCAGAAGTGGCTATTGTTGTGTTCTCTCCAGGTGACAATCCTTACTCTTTTGGTCACCCAGGAGTTGATGTTGTTGCTGCCAAGCACCTTGGACTAAAGCCTAAACGTAGGAACTCTGAAGGAAACCCCTCTTCTGATTCTTCCAATATGGAAAAATTGAATCAAGAACTTGCTGAGCTGTTGGCACAAATCCGAGAAGGTGAAAAGAAAGCTGAGACTCATGATGAGATTCTGAAGCAAGATGATGTGGCAAAACTCTCAGAGCTTAAAGAATTGAGAGATTCGTACAAAGATCTTCAAGATTGCATAAAATTGCGTCTCAGTGATATCGAGATATCAGAATGTATGATGCTTCTAGCTCAGGATCCAGTGGTTGGAAGAAAAGCGAAAACGTCAAAAAAGAAAAGAAGAAAAAATTGA

Protein sequence

>Msa1349130

MGRRKIKIERVKDSNTRQVTFSKRRTGLFKKANELSILCGAEVAIVVFSPGDNPYSFGHPGVDVVAAKHLGLKPKRRNSEGNPSSDSSNMEKLNQELAELLAQIREGEKKAETHDEILKQDDVAKLSELKELRDSYKDLQDCIKLRLSDIEISECMMLLAQDPVVGRKAKTSKKKRRKN*