Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1350510 | KEH40756.1 | 89.796 | 98 | 10 | 0 | 1 | 98 | 1 | 98 | 6.94e-62 | 201 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1350510 | sp|Q8L3W1|VRN1_ARATH | 58.696 | 92 | 38 | 0 | 5 | 96 | 4 | 95 | 3.83e-35 | 125 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1350510 | A0A072VGN2 | 89.796 | 98 | 10 | 0 | 1 | 98 | 1 | 98 | 3.31e-62 | 201 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1350510 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1350510 | MtrunA17_Chr1g0162411 | 89.796 | 98 | 10 | 0 | 1 | 98 | 1 | 98 | 1.71e-64 | 201 |
| Msa1350510 | MtrunA17_Chr1g0162441 | 79.167 | 96 | 20 | 0 | 1 | 96 | 1 | 96 | 2.73e-54 | 174 |
| Msa1350510 | MtrunA17_Chr4g0033961 | 59.783 | 92 | 37 | 0 | 5 | 96 | 4 | 95 | 2.24e-39 | 135 |
| Msa1350510 | MtrunA17_Chr1g0162421 | 77.586 | 58 | 13 | 0 | 21 | 78 | 7 | 64 | 2.37e-29 | 100 |
| Msa1350510 | MtrunA17_Chr4g0009491 | 48.889 | 90 | 46 | 0 | 7 | 96 | 225 | 314 | 6.69e-23 | 90.9 |
| Msa1350510 | MtrunA17_Chr4g0009491 | 44.737 | 76 | 42 | 0 | 21 | 96 | 11 | 86 | 1.12e-18 | 79.0 |
| Msa1350510 | MtrunA17_Chr3g0077411 | 47.253 | 91 | 47 | 1 | 7 | 96 | 262 | 352 | 1.14e-22 | 90.5 |
| Msa1350510 | MtrunA17_Chr3g0077411 | 45.652 | 92 | 50 | 0 | 7 | 98 | 25 | 116 | 3.03e-22 | 89.4 |
| Msa1350510 | MtrunA17_Chr5g0429931 | 49.333 | 75 | 38 | 0 | 22 | 96 | 10 | 84 | 1.42e-22 | 87.8 |
| Msa1350510 | MtrunA17_Chr3g0077451 | 50.000 | 76 | 38 | 0 | 21 | 96 | 10 | 85 | 1.57e-22 | 87.4 |
| Msa1350510 | MtrunA17_Chr3g0077461 | 43.333 | 90 | 51 | 0 | 7 | 96 | 237 | 326 | 4.71e-22 | 88.6 |
| Msa1350510 | MtrunA17_Chr3g0077461 | 41.667 | 96 | 55 | 1 | 1 | 96 | 2 | 96 | 1.92e-18 | 78.6 |
| Msa1350510 | MtrunA17_Chr3g0077381 | 47.778 | 90 | 47 | 0 | 7 | 96 | 247 | 336 | 4.00e-21 | 85.9 |
| Msa1350510 | MtrunA17_Chr3g0077381 | 46.053 | 76 | 41 | 0 | 21 | 96 | 34 | 109 | 1.91e-19 | 81.3 |
| Msa1350510 | MtrunA17_Chr3g0077361 | 41.935 | 93 | 53 | 1 | 7 | 98 | 40 | 132 | 3.34e-20 | 83.6 |
| Msa1350510 | MtrunA17_Chr3g0077361 | 45.070 | 71 | 39 | 0 | 7 | 77 | 289 | 359 | 2.71e-18 | 78.2 |
| Msa1350510 | MtrunA17_Chr5g0419201 | 38.889 | 90 | 55 | 0 | 7 | 96 | 16 | 105 | 1.49e-19 | 78.6 |
| Msa1350510 | MtrunA17_Chr3g0103181 | 44.444 | 90 | 48 | 1 | 7 | 96 | 12 | 99 | 1.27e-18 | 77.8 |
| Msa1350510 | MtrunA17_Chr7g0233561 | 43.333 | 90 | 51 | 0 | 7 | 96 | 18 | 107 | 1.85e-18 | 77.8 |
| Msa1350510 | MtrunA17_Chr3g0103151 | 42.697 | 89 | 49 | 1 | 7 | 95 | 12 | 98 | 2.86e-17 | 72.0 |
| Msa1350510 | MtrunA17_Chr7g0233571 | 38.889 | 90 | 55 | 0 | 7 | 96 | 10 | 99 | 1.19e-16 | 71.6 |
| Msa1350510 | MtrunA17_Chr3g0131891 | 40.000 | 90 | 54 | 0 | 7 | 96 | 19 | 108 | 2.08e-16 | 72.4 |
| Msa1350510 | MtrunA17_Chr3g0103191 | 40.000 | 90 | 52 | 1 | 7 | 96 | 12 | 99 | 4.96e-16 | 70.5 |
| Msa1350510 | MtrunA17_Chr8g0390841 | 36.667 | 90 | 57 | 0 | 7 | 96 | 39 | 128 | 4.48e-15 | 68.9 |
| Msa1350510 | MtrunA17_Chr7g0233541 | 39.189 | 74 | 45 | 0 | 23 | 96 | 2 | 75 | 1.37e-14 | 67.0 |
| Msa1350510 | MtrunA17_Chr7g0233531 | 40.000 | 75 | 45 | 0 | 23 | 97 | 2 | 76 | 2.82e-14 | 66.2 |
| Msa1350510 | MtrunA17_Chr7g0233521 | 38.667 | 75 | 46 | 0 | 23 | 97 | 2 | 76 | 3.60e-14 | 65.9 |
| Msa1350510 | MtrunA17_Chr3g0103171 | 38.667 | 75 | 46 | 0 | 22 | 96 | 5 | 79 | 4.57e-13 | 62.8 |
| Msa1350510 | MtrunA17_Chr1g0154161 | 36.667 | 90 | 57 | 0 | 7 | 96 | 30 | 119 | 4.83e-13 | 62.8 |
| Msa1350510 | MtrunA17_Chr1g0154041 | 32.609 | 92 | 61 | 1 | 5 | 96 | 14 | 104 | 7.98e-13 | 62.4 |
| Msa1350510 | MtrunA17_Chr1g0154071 | 34.483 | 87 | 57 | 0 | 10 | 96 | 30 | 116 | 8.45e-12 | 59.7 |
| Msa1350510 | MtrunA17_Chr1g0154111 | 35.556 | 90 | 58 | 0 | 7 | 96 | 26 | 115 | 1.10e-11 | 59.3 |
| Msa1350510 | MtrunA17_Chr1g0163071 | 35.135 | 74 | 48 | 0 | 23 | 96 | 2 | 75 | 1.18e-11 | 58.9 |
| Msa1350510 | MtrunA17_Chr1g0154131 | 35.556 | 90 | 57 | 1 | 7 | 96 | 26 | 114 | 1.18e-11 | 59.3 |
| Msa1350510 | MtrunA17_Chr1g0154131 | 37.179 | 78 | 49 | 0 | 19 | 96 | 194 | 271 | 5.52e-11 | 57.4 |
| Msa1350510 | MtrunA17_Chr1g0154101 | 33.721 | 86 | 56 | 1 | 11 | 96 | 187 | 271 | 1.42e-11 | 58.9 |
| Msa1350510 | MtrunA17_Chr1g0154211 | 36.471 | 85 | 54 | 0 | 12 | 96 | 27 | 111 | 4.30e-11 | 57.8 |
| Msa1350510 | MtrunA17_Chr1g0154171 | 35.632 | 87 | 56 | 0 | 10 | 96 | 25 | 111 | 5.78e-11 | 57.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1350510 | AT3G18990.2 | 58.696 | 92 | 38 | 0 | 5 | 96 | 4 | 95 | 3.52e-36 | 125 |
| Msa1350510 | AT3G18990.1 | 58.696 | 92 | 38 | 0 | 5 | 96 | 4 | 95 | 3.89e-36 | 125 |
| Msa1350510 | AT4G01580.1 | 40.860 | 93 | 55 | 0 | 4 | 96 | 27 | 119 | 3.62e-21 | 83.2 |
| Msa1350510 | AT3G18960.2 | 39.785 | 93 | 56 | 0 | 4 | 96 | 27 | 119 | 2.08e-20 | 81.3 |
| Msa1350510 | AT3G18960.1 | 39.785 | 93 | 56 | 0 | 4 | 96 | 27 | 119 | 2.57e-20 | 81.3 |
| Msa1350510 | AT3G18960.3 | 38.961 | 77 | 47 | 0 | 20 | 96 | 6 | 82 | 3.01e-14 | 64.7 |
| Msa1350510 | AT1G49475.1 | 33.684 | 95 | 62 | 1 | 2 | 96 | 29 | 122 | 4.63e-13 | 62.0 |
Find 17 sgRNAs with CRISPR-Local
Find 199 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTATAAATTTGGTGAAAT+TGG | 0.054465 | tig0011617:-3001 | Msa1350510:five_prime_UTR |
| GCTATAAATTTGGTGAAATT+GGG | 0.256472 | tig0011617:-3000 | Msa1350510:five_prime_UTR |
| TGACTTAATAGCTATAAATT+TGG | 0.305250 | tig0011617:-3010 | None:intergenic |
| TGCTTAGATTGAAGGGTTGT+TGG | 0.371314 | tig0011617:+2830 | Msa1350510:intergenic |
| TTGAAAGTTGAAAACTTTGA+AGG | 0.393967 | tig0011617:+2917 | Msa1350510:intergenic |
| AACCCTTCAATCTAAGCAAT+TGG | 0.424880 | tig0011617:-2825 | Msa1350510:intron |
| GCATTGTGAGAGAATGAGAT+TGG | 0.425049 | tig0011617:+2885 | Msa1350510:intergenic |
| TTACCAATTGCTTAGATTGA+AGG | 0.430305 | tig0011617:+2822 | Msa1350510:intergenic |
| CTATAAATTTGGTGAAATTG+GGG | 0.458614 | tig0011617:-2999 | Msa1350510:five_prime_UTR |
| AGAATGAGCTTGTGGAAAGA+AGG | 0.463674 | tig0011617:+2854 | Msa1350510:intergenic |
| TACCAATTGCTTAGATTGAA+GGG | 0.513266 | tig0011617:+2823 | Msa1350510:intergenic |
| TTTGACTGAAAAGCAGAGAA+GGG | 0.535951 | tig0011617:-2963 | Msa1350510:five_prime_UTR |
| GTTTGACTGAAAAGCAGAGA+AGG | 0.553340 | tig0011617:-2964 | Msa1350510:five_prime_UTR |
| TATAAATTTGGTGAAATTGG+GGG | 0.572057 | tig0011617:-2998 | Msa1350510:five_prime_UTR |
| TTGTGGAAAGAAGGAAGAAG+AGG | 0.582385 | tig0011617:+2863 | Msa1350510:intergenic |
| TTGTTGGAAGAATGAGCTTG+TGG | 0.610517 | tig0011617:+2846 | Msa1350510:intergenic |
| TTGACTGAAAAGCAGAGAAG+GGG | 0.640302 | tig0011617:-2962 | Msa1350510:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTATTATATTAAATTTT+AGG | - | tig0011617:1220-1239 | Msa1350510:intron | 0.0% |
| !! | TAATATAATAAAATCTCAAT+TGG | + | tig0011617:1214-1233 | Msa1350510:intergenic | 10.0% |
| !!! | TTATATTAAATTTTAGGTTT+TGG | - | tig0011617:1226-1245 | Msa1350510:intron | 10.0% |
| !! | ATTAAATAAATAAATTGGTT+TGG | + | tig0011617:2545-2564 | Msa1350510:intergenic | 10.0% |
| !! | TCTCTATTAAATAAATAAAT+TGG | + | tig0011617:2550-2569 | Msa1350510:intergenic | 10.0% |
| !! | AAACAGAATAAAAAAATCAT+GGG | + | tig0011617:456-475 | Msa1350510:intergenic | 15.0% |
| !! | TAAACAGAATAAAAAAATCA+TGG | + | tig0011617:457-476 | Msa1350510:intergenic | 15.0% |
| !!! | ATTGAAGTTTATTTTTTGTT+TGG | - | tig0011617:666-685 | Msa1350510:intron | 15.0% |
| !! | AGTGATATGAATTAAAATAT+AGG | - | tig0011617:1163-1182 | Msa1350510:intron | 15.0% |
| !! | TATGAATTAAAATATAGGAT+TGG | - | tig0011617:1168-1187 | Msa1350510:intron | 15.0% |
| !! | AAATCCAAACTTTATGAAAA+GGG | + | tig0011617:335-354 | Msa1350510:intergenic | 20.0% |
| !! | AAAATCCAAACTTTATGAAA+AGG | + | tig0011617:336-355 | Msa1350510:intergenic | 20.0% |
| !!! | CCTTTTCAATTTCAATTTTA+GGG | + | tig0011617:742-761 | Msa1350510:intergenic | 20.0% |
| !!! | ACCTTTTCAATTTCAATTTT+AGG | + | tig0011617:743-762 | Msa1350510:intergenic | 20.0% |
| !!! | TAAATTTTAGGTTTTGGATA+TGG | - | tig0011617:1232-1251 | Msa1350510:intron | 20.0% |
| !! | AAGAAAAGGAAATTGAAATT+AGG | - | tig0011617:1272-1291 | Msa1350510:intron | 20.0% |
| !!! | AGTTTATGTCTTTATTTTCA+TGG | - | tig0011617:1585-1604 | Msa1350510:intron | 20.0% |
| !! | TTGATAGAATTTATTGTCTT+GGG | - | tig0011617:1714-1733 | Msa1350510:intron | 20.0% |
| !!! | AATATTATTTTCAATTGCAG+AGG | - | tig0011617:2774-2793 | Msa1350510:intron | 20.0% |
| !! | AGCTATAAATTTGGTGAAAT+TGG | - | tig0011617:4-23 | Msa1350510:CDS | 25.0% |
| !! | GCTATAAATTTGGTGAAATT+GGG | - | tig0011617:5-24 | Msa1350510:CDS | 25.0% |
| !! | CTATAAATTTGGTGAAATTG+GGG | - | tig0011617:6-25 | Msa1350510:CDS | 25.0% |
| !! | TATAAATTTGGTGAAATTGG+GGG | - | tig0011617:7-26 | Msa1350510:CDS | 25.0% |
| ! | TTGAAAGTTGAAAACTTTGA+AGG | + | tig0011617:91-110 | Msa1350510:intergenic | 25.0% |
| ! | GAAAACAGAAACAAAAAACA+TGG | + | tig0011617:264-283 | Msa1350510:intergenic | 25.0% |
| ! | AATCCAAACTTTATGAAAAG+GGG | + | tig0011617:334-353 | Msa1350510:intergenic | 25.0% |
| !! | CATAAAGTTTGGATTTTTGT+TGG | - | tig0011617:339-358 | Msa1350510:intron | 25.0% |
| !! | AACTTGATGATCAAAATCAT+GGG | + | tig0011617:378-397 | Msa1350510:intergenic | 25.0% |
| !! | AAACTTGATGATCAAAATCA+TGG | + | tig0011617:379-398 | Msa1350510:intergenic | 25.0% |
| !!! | ATGATTTTGATCATCAAGTT+TGG | - | tig0011617:378-397 | Msa1350510:intron | 25.0% |
| !!! | GATTTTTCAGAAGTTGTATT+TGG | - | tig0011617:545-564 | Msa1350510:intron | 25.0% |
| ! | ATCAAAAGAGTCAAATTCTA+GGG | + | tig0011617:592-611 | Msa1350510:intergenic | 25.0% |
| ! | TTTGATCATAACATAACTCA+TGG | - | tig0011617:606-625 | Msa1350510:intron | 25.0% |
| ! | CCCTAAAATTGAAATTGAAA+AGG | - | tig0011617:739-758 | Msa1350510:intron | 25.0% |
| !!! | GTGTGCTGTTTTAAAAAAAA+AGG | - | tig0011617:1084-1103 | Msa1350510:intron | 25.0% |
| !!! | CTGTTTTAAAAAAAAAGGAG+AGG | - | tig0011617:1089-1108 | Msa1350510:intron | 25.0% |
| ! | ATTGCATACAGAATAAGAAA+AGG | - | tig0011617:1258-1277 | Msa1350510:intron | 25.0% |
| !! | ATAACTGTTGCAATTTTTCT+TGG | - | tig0011617:1626-1645 | Msa1350510:intron | 25.0% |
| ! | CTTGATAGAATTTATTGTCT+TGG | - | tig0011617:1713-1732 | Msa1350510:intron | 25.0% |
| ! | TTAATATATGACACAGTGAA+CGG | - | tig0011617:1755-1774 | Msa1350510:intron | 25.0% |
| ! | AAATCCAAGTAGAATTTCAT+AGG | + | tig0011617:1793-1812 | Msa1350510:intergenic | 25.0% |
| ! | ATTAACTACCGTTATGAATA+TGG | + | tig0011617:1959-1978 | Msa1350510:intergenic | 25.0% |
| ! | CATTTGGCTAAAAATAAACT+AGG | + | tig0011617:2047-2066 | Msa1350510:intergenic | 25.0% |
| !!! | TTATTTTTAGCCAAATGAGA+TGG | - | tig0011617:2050-2069 | Msa1350510:intron | 25.0% |
| !!! | TTTTTTCCTCTTTTTGATTC+TGG | - | tig0011617:2690-2709 | Msa1350510:intron | 25.0% |
| ! | TATGAGCATTTACTAACATT+TGG | - | tig0011617:2745-2764 | Msa1350510:intron | 25.0% |
| TACCAATTGCTTAGATTGAA+GGG | + | tig0011617:185-204 | Msa1350510:intergenic | 30.0% | |
| TTACCAATTGCTTAGATTGA+AGG | + | tig0011617:186-205 | Msa1350510:intergenic | 30.0% | |
| CTTTATGAAAAGGGGAATTA+GGG | + | tig0011617:326-345 | Msa1350510:intergenic | 30.0% | |
| ACTTTATGAAAAGGGGAATT+AGG | + | tig0011617:327-346 | Msa1350510:intergenic | 30.0% | |
| ! | ATTCCCCTTTTCATAAAGTT+TGG | - | tig0011617:328-347 | Msa1350510:intron | 30.0% |
| !! | AATTTGATTCAGTGTTGCTT+AGG | - | tig0011617:516-535 | Msa1350510:intron | 30.0% |
| GATCAAAAGAGTCAAATTCT+AGG | + | tig0011617:593-612 | Msa1350510:intergenic | 30.0% | |
| ! | ACCTGAACTCTTCAATTTTA+TGG | + | tig0011617:815-834 | Msa1350510:intergenic | 30.0% |
| !! | TAAATGGAGCATTGGTTAAA+TGG | + | tig0011617:843-862 | Msa1350510:intergenic | 30.0% |
| !! | TATTTGCTATGAACACTTGA+AGG | - | tig0011617:1822-1841 | Msa1350510:intron | 30.0% |
| ACGAATCTCCATATTCATAA+CGG | - | tig0011617:1948-1967 | Msa1350510:intron | 30.0% | |
| AAGTCAAATACCATCTCATT+TGG | + | tig0011617:2063-2082 | Msa1350510:intergenic | 30.0% | |
| !!! | TTGTGCAATTCTTTGGTTTT+TGG | - | tig0011617:2491-2510 | Msa1350510:intron | 30.0% |
| !!! | TGTGCAATTCTTTGGTTTTT+GGG | - | tig0011617:2492-2511 | Msa1350510:intron | 30.0% |
| TGTTTCCTCAGAAAATTATC+CGG | + | tig0011617:2803-2822 | Msa1350510:intergenic | 30.0% | |
| !! | GATAATTTTCTGAGGAAACA+CGG | - | tig0011617:2803-2822 | Msa1350510:intron | 30.0% |
| !! | ATAATTTTCTGAGGAAACAC+GGG | - | tig0011617:2804-2823 | Msa1350510:intron | 30.0% |
| TTTATTCAACGCTACTCAAT+TGG | - | tig0011617:2935-2954 | Msa1350510:five_prime_UTR | 30.0% | |
| TTACTACTATTCACATACGA+AGG | - | tig0011617:2968-2987 | Msa1350510:five_prime_UTR | 30.0% | |
| TTTGACTGAAAAGCAGAGAA+GGG | - | tig0011617:42-61 | Msa1350510:CDS | 35.0% | |
| AACCCTTCAATCTAAGCAAT+TGG | - | tig0011617:180-199 | Msa1350510:CDS | 35.0% | |
| AGCAATTCAGATACAACTTG+TGG | + | tig0011617:778-797 | Msa1350510:intergenic | 35.0% | |
| GCCATAAAATTGAAGAGTTC+AGG | - | tig0011617:811-830 | Msa1350510:intron | 35.0% | |
| !! | AAATGGACTAAATGGAGCAT+TGG | + | tig0011617:1519-1538 | Msa1350510:intergenic | 35.0% |
| ATGCTCCATTTAGTCCATTT+AGG | - | tig0011617:851-870 | Msa1350510:intron | 35.0% | |
| !! | CATGACCTAAATGGACTAAA+TGG | + | tig0011617:1511-1530 | Msa1350510:intergenic | 35.0% |
| CATTTAGTCCATTTAGGTCA+TGG | - | tig0011617:857-876 | Msa1350510:intron | 35.0% | |
| TGTGGCAAAAAATCATCCAA+GGG | + | tig0011617:1480-1499 | Msa1350510:intergenic | 35.0% | |
| ATGTGGCAAAAAATCATCCA+AGG | + | tig0011617:1481-1500 | Msa1350510:intergenic | 35.0% | |
| TCTTGTATCCATGACCTAAA+TGG | - | tig0011617:1502-1521 | Msa1350510:intron | 35.0% | |
| CATTTAGTCCATTTAGGTCA+TGG | + | tig0011617:857-876 | Msa1350510:intergenic | 35.0% | |
| !! | CATGACCTAAATGGACTAAA+TGG | - | tig0011617:1511-1530 | Msa1350510:intron | 35.0% |
| ATGCTCCATTTAGTCCATTT+AGG | + | tig0011617:851-870 | Msa1350510:intergenic | 35.0% | |
| !! | AAATGGACTAAATGGAGCAT+TGG | - | tig0011617:1519-1538 | Msa1350510:intron | 35.0% |
| !! | TAAATGGAGCATTGGCTAAA+TGG | - | tig0011617:1527-1546 | Msa1350510:intron | 35.0% |
| ACCTGAACTCAAAATTGAAC+TGG | - | tig0011617:1555-1574 | Msa1350510:intron | 35.0% | |
| CCTGAACTCAAAATTGAACT+GGG | - | tig0011617:1556-1575 | Msa1350510:intron | 35.0% | |
| AACTCAAAATTGAACTGGGT+TGG | - | tig0011617:1560-1579 | Msa1350510:intron | 35.0% | |
| GTGTGCTTGTGTGTTAATTT+CGG | - | tig0011617:2100-2119 | Msa1350510:intron | 35.0% | |
| TGTGCTTGTGTGTTAATTTC+GGG | - | tig0011617:2101-2120 | Msa1350510:intron | 35.0% | |
| TGTAGGAATTTGAGGATTTG+CGG | + | tig0011617:2174-2193 | Msa1350510:intergenic | 35.0% | |
| TTTGCAGATGTAGGAATTTG+AGG | + | tig0011617:2182-2201 | Msa1350510:intergenic | 35.0% | |
| !!! | GCTTTTTCATTTGCAGATGT+AGG | + | tig0011617:2191-2210 | Msa1350510:intergenic | 35.0% |
| AATGAAAAAGCTCTTCTCAC+TGG | - | tig0011617:2200-2219 | Msa1350510:intron | 35.0% | |
| CAGAATTGTGCACAACATTA+CGG | + | tig0011617:2378-2397 | Msa1350510:intergenic | 35.0% | |
| AAACCATGTGCACCTAAATA+GGG | + | tig0011617:2452-2471 | Msa1350510:intergenic | 35.0% | |
| TAAACCATGTGCACCTAAAT+AGG | + | tig0011617:2453-2472 | Msa1350510:intergenic | 35.0% | |
| !! | GTTTTTGGGAGTGAACAATT+GGG | - | tig0011617:2506-2525 | Msa1350510:intron | 35.0% |
| !! | TTTTTGGGAGTGAACAATTG+GGG | - | tig0011617:2507-2526 | Msa1350510:intron | 35.0% |
| !! | AAATTGGTTTGGCCTAAGTA+TGG | + | tig0011617:2534-2553 | Msa1350510:intergenic | 35.0% |
| AATGAGCCAGAATCAAAAAG+AGG | + | tig0011617:2699-2718 | Msa1350510:intergenic | 35.0% | |
| ! | TTTTCAATTGCAGAGGATTC+CGG | - | tig0011617:2781-2800 | Msa1350510:intron | 35.0% |
| !! | TAATTTTCTGAGGAAACACG+GGG | - | tig0011617:2805-2824 | Msa1350510:intron | 35.0% |
| !!! | AACCGTATTTGTTTTGTGGA+TGG | - | tig0011617:2902-2921 | Msa1350510:five_prime_UTR | 35.0% |
| AGCCATCCACAAAACAAATA+CGG | + | tig0011617:2907-2926 | Msa1350510:intergenic | 35.0% | |
| TACTATTCACATACGAAGGA+AGG | - | tig0011617:2972-2991 | Msa1350510:five_prime_UTR | 35.0% | |
| GTTTGACTGAAAAGCAGAGA+AGG | - | tig0011617:41-60 | Msa1350510:CDS | 40.0% | |
| TTGACTGAAAAGCAGAGAAG+GGG | - | tig0011617:43-62 | Msa1350510:CDS | 40.0% | |
| GCATTGTGAGAGAATGAGAT+TGG | + | tig0011617:123-142 | Msa1350510:intergenic | 40.0% | |
| TTGTGGAAAGAAGGAAGAAG+AGG | + | tig0011617:145-164 | Msa1350510:intergenic | 40.0% | |
| AGAATGAGCTTGTGGAAAGA+AGG | + | tig0011617:154-173 | Msa1350510:intergenic | 40.0% | |
| TTGTTGGAAGAATGAGCTTG+TGG | + | tig0011617:162-181 | Msa1350510:intergenic | 40.0% | |
| TGCTTAGATTGAAGGGTTGT+TGG | + | tig0011617:178-197 | Msa1350510:intergenic | 40.0% | |
| !! | AGCGATGGATTGGTATCTTA+CGG | + | tig0011617:1033-1052 | Msa1350510:intergenic | 40.0% |
| TAATACAGTAGCAACAGCGA+TGG | + | tig0011617:1048-1067 | Msa1350510:intergenic | 40.0% | |
| CAAGATCGTGATTAGCAAGA+GGG | - | tig0011617:1354-1373 | Msa1350510:intron | 40.0% | |
| AAGATCGTGATTAGCAAGAG+GGG | - | tig0011617:1355-1374 | Msa1350510:intron | 40.0% | |
| TAATGTTAAATCCCAGCCCT+TGG | - | tig0011617:1461-1480 | Msa1350510:intron | 40.0% | |
| CAAAAAATCATCCAAGGGCT+GGG | + | tig0011617:1475-1494 | Msa1350510:intergenic | 40.0% | |
| !!! | CCCAGTTCAATTTTGAGTTC+AGG | + | tig0011617:1559-1578 | Msa1350510:intergenic | 40.0% |
| GCTGCCTATGAAATTCTACT+TGG | - | tig0011617:1786-1805 | Msa1350510:intron | 40.0% | |
| CAGGTGCGTTAACTTTAATC+GGG | + | tig0011617:2139-2158 | Msa1350510:intergenic | 40.0% | |
| CCAGGTGCGTTAACTTTAAT+CGG | + | tig0011617:2140-2159 | Msa1350510:intergenic | 40.0% | |
| CGATTAAAGTTAACGCACCT+GGG | - | tig0011617:2138-2157 | Msa1350510:intron | 40.0% | |
| GATTAAAGTTAACGCACCTG+GGG | - | tig0011617:2139-2158 | Msa1350510:intron | 40.0% | |
| GTTCTCTGTTACACGTTCAA+AGG | + | tig0011617:2230-2249 | Msa1350510:intergenic | 40.0% | |
| ! | TTGTCTGAAACCCCCTATTT+AGG | - | tig0011617:2437-2456 | Msa1350510:intron | 40.0% |
| AACCATGTGCACCTAAATAG+GGG | + | tig0011617:2451-2470 | Msa1350510:intergenic | 40.0% | |
| !! | GGTTTTTGGGAGTGAACAAT+TGG | - | tig0011617:2505-2524 | Msa1350510:intron | 40.0% |
| AACAATTGGGGACCATACTT+AGG | - | tig0011617:2519-2538 | Msa1350510:intron | 40.0% | |
| ! | GGATTCCGGATAATTTTCTG+AGG | - | tig0011617:2795-2814 | Msa1350510:intron | 40.0% |
| ! | CGTCTAGGATTGAAAAAGGT+TGG | - | tig0011617:2878-2897 | Msa1350510:exon | 40.0% |
| !!! | TGGCAACCGTATTTGTTTTG+TGG | - | tig0011617:2898-2917 | Msa1350510:five_prime_UTR | 40.0% |
| !!! | GTATTTGTTTTGTGGATGGC+TGG | - | tig0011617:2906-2925 | Msa1350510:five_prime_UTR | 40.0% |
| TCTCGCATCCATGACCTAAA+TGG | + | tig0011617:868-887 | Msa1350510:intergenic | 45.0% | |
| !! | GATGGATTGGTATCTTACGG+TGG | + | tig0011617:1030-1049 | Msa1350510:intergenic | 45.0% |
| GCTGCTACTGTTATGTGTCA+AGG | + | tig0011617:1307-1326 | Msa1350510:intergenic | 45.0% | |
| CTGTCACTAACCATTCATGG+TGG | + | tig0011617:1329-1348 | Msa1350510:intergenic | 45.0% | |
| CCTCTGTCACTAACCATTCA+TGG | + | tig0011617:1332-1351 | Msa1350510:intergenic | 45.0% | |
| CCATGAATGGTTAGTGACAG+AGG | - | tig0011617:1329-1348 | Msa1350510:intron | 45.0% | |
| GCAAGATCGTGATTAGCAAG+AGG | - | tig0011617:1353-1372 | Msa1350510:intron | 45.0% | |
| GCAAAAAATCATCCAAGGGC+TGG | + | tig0011617:1476-1495 | Msa1350510:intergenic | 45.0% | |
| GGTCATGGATACAAGACATG+TGG | + | tig0011617:1498-1517 | Msa1350510:intergenic | 45.0% | |
| TGCAGTTGCTTGTAGTGTTC+TGG | - | tig0011617:1910-1929 | Msa1350510:intron | 45.0% | |
| TTAATTTCGGGCCGAGTACA+TGG | - | tig0011617:2113-2132 | Msa1350510:intron | 45.0% | |
| CTTTAATCGGGCCATGTACT+CGG | + | tig0011617:2127-2146 | Msa1350510:intergenic | 45.0% | |
| CCGATTAAAGTTAACGCACC+TGG | - | tig0011617:2137-2156 | Msa1350510:intron | 45.0% | |
| GAAGAAAGGATCCGATCACA+GGG | + | tig0011617:2265-2284 | Msa1350510:intergenic | 45.0% | |
| ACAGGTAAGTTCCTAGAGCA+AGG | + | tig0011617:2307-2326 | Msa1350510:intergenic | 45.0% | |
| ATAAGAACAGCGCACAACAC+AGG | + | tig0011617:2325-2344 | Msa1350510:intergenic | 45.0% | |
| TTCTTATGCTCGTTGCCTTG+CGG | - | tig0011617:2338-2357 | Msa1350510:intron | 45.0% | |
| ACATTACGGCCAAGGATTTC+TGG | + | tig0011617:2364-2383 | Msa1350510:intergenic | 45.0% | |
| ACCATGTGCACCTAAATAGG+GGG | + | tig0011617:2450-2469 | Msa1350510:intergenic | 45.0% | |
| GCGTGTGTTGTGCAATTCTT+TGG | - | tig0011617:2484-2503 | Msa1350510:intron | 45.0% | |
| TTTCAATCCTAGACGCCAGA+CGG | + | tig0011617:2873-2892 | Msa1350510:intergenic | 45.0% | |
| ! | CTGGCGTCTAGGATTGAAAA+AGG | - | tig0011617:2874-2893 | Msa1350510:exon | 45.0% |
| CAACGCTACTCAATTGGCAT+TGG | - | tig0011617:2941-2960 | Msa1350510:five_prime_UTR | 45.0% | |
| !! | TATTTAAACTTAAATTAATA+AGG | + | tig0011617:2584-2603 | Msa1350510:intergenic | 5.0% |
| ! | CAAGATGATGATGAGTGGGG+AGG | + | tig0011617:1004-1023 | Msa1350510:intergenic | 50.0% |
| ! | CGGCAAGATGATGATGAGTG+GGG | + | tig0011617:1007-1026 | Msa1350510:intergenic | 50.0% |
| ! | GCGGCAAGATGATGATGAGT+GGG | + | tig0011617:1008-1027 | Msa1350510:intergenic | 50.0% |
| ! | GGATTGGTATCTTACGGTGG+CGG | + | tig0011617:1027-1046 | Msa1350510:intergenic | 50.0% |
| CAGTAGCAACAGCGATGGAT+TGG | + | tig0011617:1043-1062 | Msa1350510:intergenic | 50.0% | |
| ACAGTAGCAGCCACCATGAA+TGG | - | tig0011617:1316-1335 | Msa1350510:intron | 50.0% | |
| CTCTTCCTCCTCTGTTCCAA+CGG | + | tig0011617:1384-1403 | Msa1350510:intergenic | 50.0% | |
| GTTGGAACAGAGGAGGAAGA+GGG | - | tig0011617:1383-1402 | Msa1350510:intron | 50.0% | |
| GGAAGAAAGGATCCGATCAC+AGG | + | tig0011617:2266-2285 | Msa1350510:intergenic | 50.0% | |
| GGATCCTTTCTTCCCATGAC+TGG | - | tig0011617:2272-2291 | Msa1350510:intron | 50.0% | |
| GGATCCAGTCATGGGAAGAA+AGG | + | tig0011617:2279-2298 | Msa1350510:intergenic | 50.0% | |
| AGGCAGAAGGATCCAGTCAT+GGG | + | tig0011617:2287-2306 | Msa1350510:intergenic | 50.0% | |
| AAGGCAGAAGGATCCAGTCA+TGG | + | tig0011617:2288-2307 | Msa1350510:intergenic | 50.0% | |
| AGTTCCTAGAGCAAGGCAGA+AGG | + | tig0011617:2300-2319 | Msa1350510:intergenic | 50.0% | |
| TGTGCACAACATTACGGCCA+AGG | + | tig0011617:2372-2391 | Msa1350510:intergenic | 50.0% | |
| ACCCCCTATTTAGGTGCACA+TGG | - | tig0011617:2446-2465 | Msa1350510:intron | 50.0% | |
| CAGTTGCGACAGTCGAAAGT+TGG | + | tig0011617:2832-2851 | Msa1350510:intergenic | 50.0% | |
| GTCGCAACTGTCACTATTCC+TGG | - | tig0011617:2842-2861 | Msa1350510:CDS | 50.0% | |
| GCAACTGTCACTATTCCTGG+CGG | - | tig0011617:2845-2864 | Msa1350510:CDS | 50.0% | |
| GGTCATGGATGCGAGACATG+TGG | - | tig0011617:872-891 | Msa1350510:intron | 55.0% | |
| AGAGGGAAACGTGAGGACGA+TGG | + | tig0011617:958-977 | Msa1350510:intergenic | 55.0% | |
| AGGAGGAAGAGGGAAACGTG+AGG | + | tig0011617:965-984 | Msa1350510:intergenic | 55.0% | |
| GTCGGAACAGAGGAGGAAGA+GGG | + | tig0011617:975-994 | Msa1350510:intergenic | 55.0% | |
| AGTCGGAACAGAGGAGGAAG+AGG | + | tig0011617:976-995 | Msa1350510:intergenic | 55.0% | |
| GTCATGAGTCGGAACAGAGG+AGG | + | tig0011617:982-1001 | Msa1350510:intergenic | 55.0% | |
| GAGGTCATGAGTCGGAACAG+AGG | + | tig0011617:985-1004 | Msa1350510:intergenic | 55.0% | |
| TGAGTGGGGAGGTCATGAGT+CGG | + | tig0011617:993-1012 | Msa1350510:intergenic | 55.0% | |
| ! | GGCGGCAAGATGATGATGAG+TGG | + | tig0011617:1009-1028 | Msa1350510:intergenic | 55.0% |
| CGTTGGAACAGAGGAGGAAG+AGG | - | tig0011617:1382-1401 | Msa1350510:intron | 55.0% | |
| GTTAACGCACCTGGGGTAAG+AGG | - | tig0011617:2146-2165 | Msa1350510:intron | 55.0% | |
| GATCACAGGGCAGGCAGAAA+GGG | + | tig0011617:2252-2271 | Msa1350510:intergenic | 55.0% | |
| CTTTCTGCCTGCCCTGTGAT+CGG | - | tig0011617:2251-2270 | Msa1350510:intron | 55.0% | |
| AAAGGATCCGATCACAGGGC+AGG | + | tig0011617:2261-2280 | Msa1350510:intergenic | 55.0% | |
| GGATCCTTCTGCCTTGCTCT+AGG | - | tig0011617:2293-2312 | Msa1350510:intron | 55.0% | |
| TTAGCAAGAGGGGCAGCCGT+TGG | - | tig0011617:1365-1384 | Msa1350510:intron | 60.0% | |
| GAGGAGGAAGAGGGAACGTG+AGG | - | tig0011617:1392-1411 | Msa1350510:intron | 60.0% | |
| TTTGCGGCTCCTCTTACCCC+AGG | + | tig0011617:2158-2177 | Msa1350510:intergenic | 60.0% | |
| CGATCACAGGGCAGGCAGAA+AGG | + | tig0011617:2253-2272 | Msa1350510:intergenic | 60.0% | |
| GCCTTGCGGCCAGAAATCCT+TGG | - | tig0011617:2352-2371 | Msa1350510:intron | 60.0% | |
| !! | GCCAAGGATTTCTGGCCGCA+AGG | + | tig0011617:2356-2375 | Msa1350510:intergenic | 60.0% |
| AGGGGCAGCCGTTGGAACAG+AGG | - | tig0011617:1373-1392 | Msa1350510:intron | 65.0% | |
| GGCAGCCGTTGGAACAGAGG+AGG | - | tig0011617:1376-1395 | Msa1350510:intron | 65.0% | |
| CTATTCCTGGCGGCACCGTC+TGG | - | tig0011617:2855-2874 | Msa1350510:CDS | 65.0% | |
| !! | AGACGCCAGACGGTGCCGCC+AGG | + | tig0011617:2863-2882 | Msa1350510:intergenic | 75.0% |
| GGCGGCACCGTCTGGCGTCT+AGG | - | tig0011617:2863-2882 | Msa1350510:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0011617 | gene | 3 | 3024 | 3 | ID=Msa1350510;Name=Msa1350510 |
| tig0011617 | mRNA | 3 | 3024 | 3 | ID=Msa1350510-mRNA-1;Parent=Msa1350510;Name=Msa1350510-mRNA-1;_AED=0.01;_eAED=0.01;_QI=136|1|0.5|1|1|1|2|0|98 |
| tig0011617 | exon | 3 | 233 | 3 | ID=Msa1350510-mRNA-1:exon:7428;Parent=Msa1350510-mRNA-1 |
| tig0011617 | exon | 2826 | 3024 | 2826 | ID=Msa1350510-mRNA-1:exon:7427;Parent=Msa1350510-mRNA-1 |
| tig0011617 | five_prime_UTR | 2889 | 3024 | 2889 | ID=Msa1350510-mRNA-1:five_prime_utr;Parent=Msa1350510-mRNA-1 |
| tig0011617 | CDS | 2826 | 2888 | 2826 | ID=Msa1350510-mRNA-1:cds;Parent=Msa1350510-mRNA-1 |
| tig0011617 | CDS | 3 | 233 | 3 | ID=Msa1350510-mRNA-1:cds;Parent=Msa1350510-mRNA-1 |
| Gene Sequence |
| Protein sequence |
