Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1350900 | XP_013468116.1 | 96.233 | 292 | 9 | 2 | 1 | 290 | 1 | 292 | 0.0 | 582 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1350900 | sp|Q681X4|ZAT5_ARATH | 40.217 | 276 | 140 | 9 | 11 | 274 | 8 | 270 | 6.42e-43 | 154 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1350900 | A0A072VL43 | 96.233 | 292 | 9 | 2 | 1 | 290 | 1 | 292 | 0.0 | 582 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1350900 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1350900 | MtrunA17_Chr1g0180311 | 96.233 | 292 | 9 | 2 | 1 | 290 | 1 | 292 | 0.0 | 582 |
| Msa1350900 | MtrunA17_Chr1g0197281 | 38.924 | 316 | 137 | 14 | 5 | 276 | 9 | 312 | 3.52e-47 | 164 |
| Msa1350900 | MtrunA17_Chr4g0027991 | 40.199 | 301 | 121 | 10 | 3 | 276 | 5 | 273 | 2.16e-45 | 158 |
| Msa1350900 | MtrunA17_Chr2g0320311 | 40.000 | 285 | 126 | 12 | 19 | 276 | 23 | 289 | 4.70e-45 | 157 |
| Msa1350900 | MtrunA17_Chr7g0263121 | 38.150 | 173 | 66 | 5 | 68 | 240 | 3 | 134 | 1.34e-25 | 101 |
| Msa1350900 | MtrunA17_Chr7g0222831 | 42.553 | 141 | 38 | 3 | 80 | 220 | 12 | 109 | 1.20e-24 | 99.8 |
| Msa1350900 | MtrunA17_Chr1g0212561 | 42.553 | 141 | 44 | 4 | 80 | 220 | 16 | 119 | 5.86e-24 | 98.2 |
| Msa1350900 | MtrunA17_Chr1g0182161 | 34.975 | 203 | 81 | 5 | 68 | 269 | 4 | 156 | 2.91e-23 | 95.5 |
| Msa1350900 | MtrunA17_Chr1g0182181 | 34.673 | 199 | 79 | 6 | 72 | 269 | 3 | 151 | 4.68e-21 | 89.4 |
| Msa1350900 | MtrunA17_Chr4g0012791 | 33.929 | 224 | 112 | 8 | 76 | 264 | 158 | 380 | 6.83e-21 | 94.4 |
| Msa1350900 | MtrunA17_Chr1g0152661 | 37.436 | 195 | 88 | 6 | 76 | 269 | 39 | 200 | 2.54e-19 | 86.3 |
| Msa1350900 | MtrunA17_Chr1g0207451 | 32.804 | 189 | 79 | 5 | 76 | 264 | 56 | 196 | 2.74e-19 | 86.7 |
| Msa1350900 | MtrunA17_Chr1g0188911 | 34.545 | 165 | 88 | 4 | 111 | 263 | 37 | 193 | 1.44e-18 | 83.2 |
| Msa1350900 | MtrunA17_Chr3g0134711 | 32.308 | 195 | 97 | 5 | 76 | 269 | 48 | 208 | 2.26e-16 | 77.8 |
| Msa1350900 | MtrunA17_Chr4g0061301 | 33.511 | 188 | 95 | 7 | 104 | 278 | 331 | 501 | 3.63e-16 | 80.1 |
| Msa1350900 | MtrunA17_Chr1g0188901 | 33.951 | 162 | 87 | 3 | 102 | 263 | 44 | 185 | 4.00e-15 | 73.2 |
| Msa1350900 | MtrunA17_Chr4g0012691 | 34.694 | 147 | 75 | 2 | 118 | 264 | 220 | 345 | 2.14e-14 | 73.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1350900 | AT5G03510.1 | 39.934 | 303 | 144 | 14 | 3 | 289 | 4 | 284 | 1.28e-50 | 172 |
| Msa1350900 | AT5G04390.1 | 36.391 | 327 | 137 | 12 | 19 | 281 | 14 | 333 | 5.69e-46 | 162 |
| Msa1350900 | AT2G28200.1 | 40.217 | 276 | 140 | 9 | 11 | 274 | 8 | 270 | 6.52e-44 | 154 |
| Msa1350900 | AT3G10470.1 | 31.549 | 355 | 143 | 11 | 19 | 280 | 17 | 364 | 2.32e-33 | 129 |
| Msa1350900 | AT2G37430.1 | 32.870 | 216 | 94 | 7 | 68 | 279 | 3 | 171 | 5.76e-21 | 89.7 |
| Msa1350900 | AT3G19580.1 | 35.385 | 195 | 94 | 8 | 76 | 266 | 67 | 233 | 3.32e-19 | 87.0 |
| Msa1350900 | AT3G19580.2 | 35.385 | 195 | 94 | 8 | 76 | 266 | 67 | 233 | 3.32e-19 | 87.0 |
| Msa1350900 | AT2G45120.1 | 32.536 | 209 | 87 | 8 | 77 | 276 | 148 | 311 | 8.28e-19 | 86.7 |
| Msa1350900 | AT3G53600.1 | 32.020 | 203 | 86 | 6 | 68 | 267 | 3 | 156 | 5.07e-18 | 81.6 |
| Msa1350900 | AT1G02040.1 | 35.079 | 191 | 112 | 5 | 76 | 265 | 107 | 286 | 5.77e-18 | 84.3 |
| Msa1350900 | AT5G67450.1 | 32.524 | 206 | 99 | 7 | 76 | 266 | 60 | 240 | 2.31e-17 | 81.3 |
| Msa1350900 | AT3G60580.1 | 30.622 | 209 | 93 | 7 | 77 | 277 | 124 | 288 | 1.05e-16 | 80.1 |
| Msa1350900 | AT3G49930.1 | 34.211 | 152 | 56 | 4 | 76 | 219 | 56 | 171 | 7.57e-15 | 73.6 |
| Msa1350900 | AT2G17180.1 | 29.508 | 183 | 80 | 5 | 75 | 241 | 120 | 269 | 2.16e-13 | 70.1 |
| Msa1350900 | AT1G27730.1 | 34.031 | 191 | 82 | 7 | 76 | 265 | 51 | 198 | 4.40e-13 | 68.6 |
| Msa1350900 | AT4G35280.1 | 36.054 | 147 | 53 | 4 | 75 | 219 | 137 | 244 | 7.85e-13 | 68.9 |
| Msa1350900 | AT5G56200.1 | 37.931 | 116 | 62 | 3 | 120 | 235 | 344 | 449 | 5.74e-12 | 67.4 |
Find 67 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTTTCTCTAATTCTTCTT+TGG | 0.193682 | tig0011965:+6958 | Msa1350900:CDS |
| GTAGTAGTAATAGTAGTAAT+AGG | 0.197989 | tig0011965:-6659 | None:intergenic |
| TTCTTAGCTTCATGAGATTT+AGG | 0.230638 | tig0011965:-6836 | None:intergenic |
| CATACACAACAAATCATAAA+AGG | 0.299770 | tig0011965:+6152 | Msa1350900:CDS |
| AATAATAGCAACAACAATTC+TGG | 0.306288 | tig0011965:+6260 | Msa1350900:CDS |
| TAGTAGTAATAGTAGTAATA+GGG | 0.323646 | tig0011965:-6658 | None:intergenic |
| ACATTACAATTTGCCTTGTT+AGG | 0.331743 | tig0011965:-6536 | None:intergenic |
| GTTGCTAGATCTGCAACATC+TGG | 0.345335 | tig0011965:+8791 | Msa1350900:CDS |
| CGCTTGCCCTGATGAGAATT+CGG | 0.352937 | tig0011965:-6720 | None:intergenic |
| AACATCTGGGTTGGTTTCTT+CGG | 0.356599 | tig0011965:+8805 | Msa1350900:CDS |
| CAAAGAGAGTATGGTATTCA+TGG | 0.363698 | tig0011965:-6618 | None:intergenic |
| GTGGTCTTGAGTTACATATC+TGG | 0.369110 | tig0011965:+8746 | Msa1350900:CDS |
| AGTTACATATCTGGCCTAGA+TGG | 0.370296 | tig0011965:+8755 | Msa1350900:CDS |
| GTTGTCGTGCATGGAGTTGA+TGG | 0.374305 | tig0011965:+9080 | Msa1350900:CDS |
| ACAATTTGCCTTGTTAGGTT+TGG | 0.388660 | tig0011965:-6531 | None:intergenic |
| TTGGGTCAAGATTGCTTTGG+TGG | 0.393120 | tig0011965:+8727 | Msa1350900:CDS |
| TTCTCATCAGGGCAAGCGTT+AGG | 0.396369 | tig0011965:+6725 | Msa1350900:CDS |
| GTTTCAAATTCTTGCAATGA+AGG | 0.402330 | tig0011965:+6227 | Msa1350900:CDS |
| TTCCCTTCATTCCAAGCACT+TGG | 0.415764 | tig0011965:+6488 | Msa1350900:CDS |
| GAAGGCTTGCAAAGAGAGTA+TGG | 0.416171 | tig0011965:-6627 | None:intergenic |
| TCTAGGCTGAAACGAAAACT+TGG | 0.422075 | tig0011965:-6924 | None:intergenic |
| TCTCATCAGGGCAAGCGTTA+GGG | 0.429324 | tig0011965:+6726 | Msa1350900:CDS |
| CCTTCATTCCAAGCACTTGG+TGG | 0.433452 | tig0011965:+6491 | Msa1350900:CDS |
| TTCTCGTAGTTCTCACTTGG+TGG | 0.441467 | tig0011965:+8662 | Msa1350900:intron |
| CAAGAGAAGACGCAAAGGTT+TGG | 0.445990 | tig0011965:+8988 | Msa1350900:CDS |
| CCACCAAGTGCTTGGAATGA+AGG | 0.449030 | tig0011965:-6491 | None:intergenic |
| CTCTATGTCCACCAAGTGCT+TGG | 0.449570 | tig0011965:-6499 | None:intergenic |
| TGTGGTGCCGAATTCTCATC+AGG | 0.450929 | tig0011965:+6713 | Msa1350900:CDS |
| TCCACTTAGGTTAACTATGC+CGG | 0.455854 | tig0011965:+6205 | Msa1350900:CDS |
| AGTTCTCACTTGGTGGTTCG+AGG | 0.463380 | tig0011965:+8669 | Msa1350900:intron |
| GATTTGTTGTGTATGATCCT+TGG | 0.463931 | tig0011965:-6144 | None:intergenic |
| ACTCTCTTTGCAAGCCTTCG+CGG | 0.471200 | tig0011965:+6631 | Msa1350900:CDS |
| GACAGAAGTTTGAAATGGAA+TGG | 0.476422 | tig0011965:+9029 | Msa1350900:CDS |
| TAGATCTGCAACATCTGGGT+TGG | 0.481991 | tig0011965:+8796 | Msa1350900:CDS |
| TCATTGCAAGAATTTGAAAC+CGG | 0.487346 | tig0011965:-6224 | None:intergenic |
| TCCAACTTAAAACCATTCCT+AGG | 0.495975 | tig0011965:-6860 | None:intergenic |
| TTAATGCTTGTTGTCGTGCA+TGG | 0.500667 | tig0011965:+9071 | Msa1350900:CDS |
| TAAGTGGAGATGGTAGCCTT+TGG | 0.503402 | tig0011965:-6190 | None:intergenic |
| GGGGACATATGCGGAGACAT+AGG | 0.522526 | tig0011965:+6747 | Msa1350900:CDS |
| CACCAAGTGCTTGGAATGAA+GGG | 0.524007 | tig0011965:-6490 | None:intergenic |
| TTGCTAGATCTGCAACATCT+GGG | 0.537282 | tig0011965:+8792 | Msa1350900:CDS |
| GAAAACGAACAAAGCGCCAA+AGG | 0.538915 | tig0011965:+6174 | Msa1350900:CDS |
| AGTAATAGGGGTCGCCGCGA+AGG | 0.542835 | tig0011965:-6645 | None:intergenic |
| TGTCTCATTCTATTAGCTCA+AGG | 0.553385 | tig0011965:+6356 | Msa1350900:CDS |
| CTCATCAGGGCAAGCGTTAG+GGG | 0.556910 | tig0011965:+6727 | Msa1350900:CDS |
| GAGAGTATGGTATTCATGGT+TGG | 0.560913 | tig0011965:-6614 | None:intergenic |
| AGTAGTAATAGTAGTAATAG+GGG | 0.562749 | tig0011965:-6657 | None:intergenic |
| AAAGGCTACCATCTCCACTT+AGG | 0.563673 | tig0011965:+6192 | Msa1350900:CDS |
| ACTTCTATGAGTTTGAGTAT+TGG | 0.575511 | tig0011965:+6809 | Msa1350900:CDS |
| ACTTTCTCGTAGTTCTCACT+TGG | 0.576382 | tig0011965:+8659 | Msa1350900:intron |
| GGCCTAGATGGTTTAAAACC+CGG | 0.580054 | tig0011965:+8767 | Msa1350900:CDS |
| CTTGGAAGATCAACTCGTGA+TGG | 0.581786 | tig0011965:+6118 | Msa1350900:CDS |
| ATAGTTAACCTAAGTGGAGA+TGG | 0.586474 | tig0011965:-6200 | None:intergenic |
| CTCATGAAGCTAAGAAACCT+AGG | 0.586857 | tig0011965:+6843 | Msa1350900:CDS |
| TCAACTCGTGATGGTTTCCA+AGG | 0.587185 | tig0011965:+6127 | Msa1350900:CDS |
| ACCGGCATAGTTAACCTAAG+TGG | 0.587977 | tig0011965:-6206 | None:intergenic |
| AAGTCATACCAAACCTAACA+AGG | 0.591535 | tig0011965:+6523 | Msa1350900:CDS |
| ATTCATGAGTGTTCGATATG+TGG | 0.596597 | tig0011965:+6695 | Msa1350900:CDS |
| TGTTGCAGATCTAGCAACAC+CGG | 0.599347 | tig0011965:-8786 | None:intergenic |
| GAAGCTAAGAAACCTAGGAA+TGG | 0.622427 | tig0011965:+6848 | Msa1350900:CDS |
| TCATCAGGGCAAGCGTTAGG+GGG | 0.629544 | tig0011965:+6728 | Msa1350900:CDS |
| GTTGCAGATCTAGCAACACC+GGG | 0.643155 | tig0011965:-8785 | None:intergenic |
| AATAGCAACAACAATTCTGG+AGG | 0.652305 | tig0011965:+6263 | Msa1350900:CDS |
| GTGGTGCCGAATTCTCATCA+GGG | 0.679259 | tig0011965:+6714 | Msa1350900:CDS |
| AAGTTTGAAATGGAATGGTG+TGG | 0.682191 | tig0011965:+9034 | Msa1350900:CDS |
| TCATACAAGAGAAGACGCAA+AGG | 0.689833 | tig0011965:+8983 | Msa1350900:CDS |
| GGTGGTTCGAGGTCTCCGTG+CGG | 0.784897 | tig0011965:+8680 | Msa1350900:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATTTCCTTTAAATAT+TGG | + | tig0011965:7249-7268 | Msa1350900:intron | 10.0% |
| !! | GATTATATATTTCATAAAAA+TGG | - | tig0011965:7372-7391 | None:intergenic | 10.0% |
| !! | ATTAGATATAAATTTAAAGA+AGG | - | tig0011965:7592-7611 | None:intergenic | 10.0% |
| !!! | ATTATCTTTTTATTCAAAAA+AGG | - | tig0011965:7819-7838 | None:intergenic | 10.0% |
| !!! | TTATATTTTTGTTATATTGT+TGG | - | tig0011965:8311-8330 | None:intergenic | 10.0% |
| !! | AAATTATCGTAAAAAAATCA+TGG | - | tig0011965:7561-7580 | None:intergenic | 15.0% |
| !! | TCATTGAAATAGATAAATTA+TGG | - | tig0011965:8286-8305 | None:intergenic | 15.0% |
| !! | TAGTAGTAATAGTAGTAATA+GGG | - | tig0011965:6661-6680 | None:intergenic | 20.0% |
| !! | ATTTGACTAAATCACAAAAT+GGG | - | tig0011965:7299-7318 | None:intergenic | 20.0% |
| !! | AATTTGACTAAATCACAAAA+TGG | - | tig0011965:7300-7319 | None:intergenic | 20.0% |
| !! | TTCAAAAAAGGAATAAAGAT+AGG | - | tig0011965:7807-7826 | None:intergenic | 20.0% |
| !!! | ACAATCTTCTTTACAATTTT+TGG | + | tig0011965:7921-7940 | Msa1350900:intron | 20.0% |
| !! | GTTAATAGTATGTAATGTAA+TGG | - | tig0011965:7967-7986 | None:intergenic | 20.0% |
| !! | CAATATTGCTAAAAACATAA+AGG | - | tig0011965:8010-8029 | None:intergenic | 20.0% |
| !! | TTTATACGCAAATTTATTCA+AGG | + | tig0011965:8135-8154 | Msa1350900:intron | 20.0% |
| !!! | TAGATAAATTATGGTTAGTT+TGG | - | tig0011965:8277-8296 | None:intergenic | 20.0% |
| ! | CATACACAACAAATCATAAA+AGG | + | tig0011965:6152-6171 | Msa1350900:CDS | 25.0% |
| ! | AATAATAGCAACAACAATTC+TGG | + | tig0011965:6260-6279 | Msa1350900:CDS | 25.0% |
| ! | AGAAAAAGAAGAAGAAGATT+TGG | + | tig0011965:6328-6347 | Msa1350900:CDS | 25.0% |
| ! | AGTAGTAATAGTAGTAATAG+GGG | - | tig0011965:6660-6679 | None:intergenic | 25.0% |
| ! | GTAGTAGTAATAGTAGTAAT+AGG | - | tig0011965:6662-6681 | None:intergenic | 25.0% |
| !! | AAAGCAATAACATTTTCTCT+AGG | - | tig0011965:6944-6963 | None:intergenic | 25.0% |
| ! | TTCAATGTAGAATGAATGAA+TGG | - | tig0011965:7101-7120 | None:intergenic | 25.0% |
| ! | TTTGACTAAATCACAAAATG+GGG | - | tig0011965:7298-7317 | None:intergenic | 25.0% |
| !!! | TATTTCATAAAAATGGGCTA+AGG | - | tig0011965:7365-7384 | None:intergenic | 25.0% |
| !!! | ACTTTCAGTTTGTAGTTTTA+TGG | - | tig0011965:7454-7473 | None:intergenic | 25.0% |
| ! | CAGCTCATTATATAATATAG+CGG | - | tig0011965:7624-7643 | None:intergenic | 25.0% |
| !! | CGTAGAAAAATGTTTCTTTT+AGG | + | tig0011965:7774-7793 | Msa1350900:intron | 25.0% |
| ! | AAAACAATAACGATTGTTGT+TGG | - | tig0011965:8361-8380 | None:intergenic | 25.0% |
| ! | TCATTGCAAGAATTTGAAAC+CGG | - | tig0011965:6227-6246 | None:intergenic | 30.0% |
| GTTTCAAATTCTTGCAATGA+AGG | + | tig0011965:6227-6246 | Msa1350900:CDS | 30.0% | |
| ! | CTTCTTTTTCTTCTTCTGAT+CGG | - | tig0011965:6319-6338 | None:intergenic | 30.0% |
| ! | ACATTACAATTTGCCTTGTT+AGG | - | tig0011965:6539-6558 | None:intergenic | 30.0% |
| ACTTCTATGAGTTTGAGTAT+TGG | + | tig0011965:6809-6828 | Msa1350900:CDS | 30.0% | |
| TTCTTAGCTTCATGAGATTT+AGG | - | tig0011965:6839-6858 | None:intergenic | 30.0% | |
| ! | TGATCTTTTTGATCAACTTC+TGG | - | tig0011965:6902-6921 | None:intergenic | 30.0% |
| TGCTTTCTCTAATTCTTCTT+TGG | + | tig0011965:6958-6977 | Msa1350900:CDS | 30.0% | |
| TTTCTCTAATTCTTCTTTGG+TGG | + | tig0011965:6961-6980 | Msa1350900:intron | 30.0% | |
| GACTTTGAGCCAATATTTAA+AGG | - | tig0011965:7261-7280 | None:intergenic | 30.0% | |
| TTGACTAAATCACAAAATGG+GGG | - | tig0011965:7297-7316 | None:intergenic | 30.0% | |
| !!! | TCAGTTTGTAGTTTTATGGT+TGG | - | tig0011965:7450-7469 | None:intergenic | 30.0% |
| GAAAGTTAGTTAGTTCCTTT+AGG | + | tig0011965:7468-7487 | Msa1350900:intron | 30.0% | |
| TTTCATCAAATTGTGTCATG+TGG | + | tig0011965:7517-7536 | Msa1350900:intron | 30.0% | |
| AGATTGAAAACTATAGTGAC+AGG | - | tig0011965:7695-7714 | None:intergenic | 30.0% | |
| ! | CTGCTCTAGATATATATTCA+CGG | + | tig0011965:7713-7732 | Msa1350900:intron | 30.0% |
| AAACATTAGCGCAATAAAAG+TGG | - | tig0011965:8166-8185 | None:intergenic | 30.0% | |
| !!! | TTGACAAAAAGAAGGCATTT+TGG | + | tig0011965:8708-8727 | Msa1350900:CDS | 30.0% |
| !!! | TGACAAAAAGAAGGCATTTT+GGG | + | tig0011965:8709-8728 | Msa1350900:CDS | 30.0% |
| ! | AACAAATTTGGAATGGAATC+GGG | - | tig0011965:8925-8944 | None:intergenic | 30.0% |
| ! | CAACAAATTTGGAATGGAAT+CGG | - | tig0011965:8926-8945 | None:intergenic | 30.0% |
| AGATCTCAACAAATTTGGAA+TGG | - | tig0011965:8932-8951 | None:intergenic | 30.0% | |
| ! | TTTTCGACAGAAGTTTGAAA+TGG | + | tig0011965:9024-9043 | Msa1350900:CDS | 30.0% |
| !! | GATTTGTTGTGTATGATCCT+TGG | - | tig0011965:6147-6166 | None:intergenic | 35.0% |
| ATAGTTAACCTAAGTGGAGA+TGG | - | tig0011965:6203-6222 | None:intergenic | 35.0% | |
| AATAGCAACAACAATTCTGG+AGG | + | tig0011965:6263-6282 | Msa1350900:CDS | 35.0% | |
| TGTCTCATTCTATTAGCTCA+AGG | + | tig0011965:6356-6375 | Msa1350900:CDS | 35.0% | |
| AAGTCATACCAAACCTAACA+AGG | + | tig0011965:6523-6542 | Msa1350900:CDS | 35.0% | |
| ! | ACAATTTGCCTTGTTAGGTT+TGG | - | tig0011965:6534-6553 | None:intergenic | 35.0% |
| ! | CAAAGAGAGTATGGTATTCA+TGG | - | tig0011965:6621-6640 | None:intergenic | 35.0% |
| ATTCATGAGTGTTCGATATG+TGG | + | tig0011965:6695-6714 | Msa1350900:CDS | 35.0% | |
| !!! | ACCTAGGAATGGTTTTAAGT+TGG | + | tig0011965:6859-6878 | Msa1350900:CDS | 35.0% |
| TCCAACTTAAAACCATTCCT+AGG | - | tig0011965:6863-6882 | None:intergenic | 35.0% | |
| GCATTGAGGAACTTTAGTAA+TGG | - | tig0011965:6991-7010 | None:intergenic | 35.0% | |
| !! | ATCTTTCTAGCTCAGAAATC+TGG | - | tig0011965:7494-7513 | None:intergenic | 35.0% |
| TATAGTGACAGGAGCAAATA+AGG | - | tig0011965:7684-7703 | None:intergenic | 35.0% | |
| ! | GTGTTGAAGTACTAGTTCAA+CGG | - | tig0011965:8537-8556 | None:intergenic | 35.0% |
| !!! | AAGTGTTTTGAAACGAGTCA+CGG | - | tig0011965:8643-8662 | None:intergenic | 35.0% |
| ! | TTTTTGTCAAAAGATCCGCA+CGG | - | tig0011965:8698-8717 | None:intergenic | 35.0% |
| ! | CGGATCTTTTGACAAAAAGA+AGG | + | tig0011965:8700-8719 | Msa1350900:CDS | 35.0% |
| !! | ATTTTGGGTCAAGATTGCTT+TGG | + | tig0011965:8724-8743 | Msa1350900:CDS | 35.0% |
| ! | CGATGGTTGCATTTCATTTT+TGG | + | tig0011965:8890-8909 | Msa1350900:intron | 35.0% |
| CCTGTAGATCTCAACAAATT+TGG | - | tig0011965:8937-8956 | None:intergenic | 35.0% | |
| !! | CCAAATTTGTTGAGATCTAC+AGG | + | tig0011965:8934-8953 | Msa1350900:intron | 35.0% |
| ! | CTACAGGTTTTCAAACTTTC+AGG | + | tig0011965:8950-8969 | Msa1350900:intron | 35.0% |
| ! | GACAGAAGTTTGAAATGGAA+TGG | + | tig0011965:9029-9048 | Msa1350900:CDS | 35.0% |
| ! | AAGTTTGAAATGGAATGGTG+TGG | + | tig0011965:9034-9053 | Msa1350900:CDS | 35.0% |
| TCCACTTAGGTTAACTATGC+CGG | + | tig0011965:6205-6224 | Msa1350900:CDS | 40.0% | |
| ! | GAGAGTATGGTATTCATGGT+TGG | - | tig0011965:6617-6636 | None:intergenic | 40.0% |
| CTCATGAAGCTAAGAAACCT+AGG | + | tig0011965:6843-6862 | Msa1350900:CDS | 40.0% | |
| GAAGCTAAGAAACCTAGGAA+TGG | + | tig0011965:6848-6867 | Msa1350900:CDS | 40.0% | |
| !!! | TTTTGATCAACTTCTGGAGC+TGG | - | tig0011965:6896-6915 | None:intergenic | 40.0% |
| TCTAGGCTGAAACGAAAACT+TGG | - | tig0011965:6927-6946 | None:intergenic | 40.0% | |
| ! | TGCTGAATACACAAGCATTG+AGG | - | tig0011965:7005-7024 | None:intergenic | 40.0% |
| GAGAGTGAACAGAAGAAGAA+AGG | + | tig0011965:7418-7437 | Msa1350900:intron | 40.0% | |
| AGGAGCAAATAAGGCAGAAA+GGG | - | tig0011965:7675-7694 | None:intergenic | 40.0% | |
| AGGTGAGGATAAAGTCAATC+CGG | + | tig0011965:8562-8581 | Msa1350900:intron | 40.0% | |
| TTGAGCTCGTTCATAATCAC+CGG | + | tig0011965:8608-8627 | Msa1350900:intron | 40.0% | |
| !!! | AGTGTTTTGAAACGAGTCAC+GGG | - | tig0011965:8642-8661 | None:intergenic | 40.0% |
| ACTTTCTCGTAGTTCTCACT+TGG | + | tig0011965:8659-8678 | Msa1350900:intron | 40.0% | |
| ! | GTGGTCTTGAGTTACATATC+TGG | + | tig0011965:8746-8765 | Msa1350900:CDS | 40.0% |
| AGTTACATATCTGGCCTAGA+TGG | + | tig0011965:8755-8774 | Msa1350900:CDS | 40.0% | |
| TTGCTAGATCTGCAACATCT+GGG | + | tig0011965:8792-8811 | Msa1350900:CDS | 40.0% | |
| !! | AACATCTGGGTTGGTTTCTT+CGG | + | tig0011965:8805-8824 | Msa1350900:CDS | 40.0% |
| TCATACAAGAGAAGACGCAA+AGG | + | tig0011965:8983-9002 | Msa1350900:CDS | 40.0% | |
| !! | TTAATGCTTGTTGTCGTGCA+TGG | + | tig0011965:9071-9090 | Msa1350900:CDS | 40.0% |
| CTTGGAAGATCAACTCGTGA+TGG | + | tig0011965:6118-6137 | Msa1350900:CDS | 45.0% | |
| TCAACTCGTGATGGTTTCCA+AGG | + | tig0011965:6127-6146 | Msa1350900:CDS | 45.0% | |
| ! | GAAAACGAACAAAGCGCCAA+AGG | + | tig0011965:6174-6193 | Msa1350900:CDS | 45.0% |
| TAAGTGGAGATGGTAGCCTT+TGG | - | tig0011965:6193-6212 | None:intergenic | 45.0% | |
| AAAGGCTACCATCTCCACTT+AGG | + | tig0011965:6192-6211 | Msa1350900:CDS | 45.0% | |
| ACCGGCATAGTTAACCTAAG+TGG | - | tig0011965:6209-6228 | None:intergenic | 45.0% | |
| TTCCCTTCATTCCAAGCACT+TGG | + | tig0011965:6488-6507 | Msa1350900:CDS | 45.0% | |
| CACCAAGTGCTTGGAATGAA+GGG | - | tig0011965:6493-6512 | None:intergenic | 45.0% | |
| GAAGGCTTGCAAAGAGAGTA+TGG | - | tig0011965:6630-6649 | None:intergenic | 45.0% | |
| AGCTCAGAAATCTGGCCTAA+AGG | - | tig0011965:7486-7505 | None:intergenic | 45.0% | |
| CAGGAGCAAATAAGGCAGAA+AGG | - | tig0011965:7676-7695 | None:intergenic | 45.0% | |
| ACATGATGACCTTGAAGGAG+AGG | - | tig0011965:8484-8503 | None:intergenic | 45.0% | |
| CTAGTACTTCAACACTTCGC+AGG | + | tig0011965:8542-8561 | Msa1350900:intron | 45.0% | |
| !!! | GTGTTTTGAAACGAGTCACG+GGG | - | tig0011965:8641-8660 | None:intergenic | 45.0% |
| TTCTCGTAGTTCTCACTTGG+TGG | + | tig0011965:8662-8681 | Msa1350900:intron | 45.0% | |
| TTGGGTCAAGATTGCTTTGG+TGG | + | tig0011965:8727-8746 | Msa1350900:CDS | 45.0% | |
| ! | GGCCTAGATGGTTTAAAACC+CGG | + | tig0011965:8767-8786 | Msa1350900:CDS | 45.0% |
| !!! | CACCGGGTTTTAAACCATCT+AGG | - | tig0011965:8772-8791 | None:intergenic | 45.0% |
| TGTTGCAGATCTAGCAACAC+CGG | - | tig0011965:8789-8808 | None:intergenic | 45.0% | |
| GTTGCTAGATCTGCAACATC+TGG | + | tig0011965:8791-8810 | Msa1350900:CDS | 45.0% | |
| TAGATCTGCAACATCTGGGT+TGG | + | tig0011965:8796-8815 | Msa1350900:CDS | 45.0% | |
| !! | ACTTCTAAGGCAGATATCGG+CGG | - | tig0011965:8844-8863 | None:intergenic | 45.0% |
| !! | GCCACTTCTAAGGCAGATAT+CGG | - | tig0011965:8847-8866 | None:intergenic | 45.0% |
| GATATCTGCCTTAGAAGTGG+CGG | + | tig0011965:8846-8865 | Msa1350900:intron | 45.0% | |
| TCTGTGTTTCACTTGCACGA+TGG | + | tig0011965:8873-8892 | Msa1350900:intron | 45.0% | |
| CAAGAGAAGACGCAAAGGTT+TGG | + | tig0011965:8988-9007 | Msa1350900:CDS | 45.0% | |
| !! | AAAAAGTAAAATAAAAAATA+AGG | - | tig0011965:7040-7059 | None:intergenic | 5.0% |
| !! | ATTATATATTTCATAAAAAT+GGG | - | tig0011965:7371-7390 | None:intergenic | 5.0% |
| CCACCAAGTGCTTGGAATGA+AGG | - | tig0011965:6494-6513 | None:intergenic | 50.0% | |
| CCTTCATTCCAAGCACTTGG+TGG | + | tig0011965:6491-6510 | Msa1350900:CDS | 50.0% | |
| CTCTATGTCCACCAAGTGCT+TGG | - | tig0011965:6502-6521 | None:intergenic | 50.0% | |
| ACTCTCTTTGCAAGCCTTCG+CGG | + | tig0011965:6631-6650 | Msa1350900:CDS | 50.0% | |
| ! | TGTGGTGCCGAATTCTCATC+AGG | + | tig0011965:6713-6732 | Msa1350900:CDS | 50.0% |
| ! | GTGGTGCCGAATTCTCATCA+GGG | + | tig0011965:6714-6733 | Msa1350900:CDS | 50.0% |
| CGCTTGCCCTGATGAGAATT+CGG | - | tig0011965:6723-6742 | None:intergenic | 50.0% | |
| TTCTCATCAGGGCAAGCGTT+AGG | + | tig0011965:6725-6744 | Msa1350900:CDS | 50.0% | |
| TCTCATCAGGGCAAGCGTTA+GGG | + | tig0011965:6726-6745 | Msa1350900:CDS | 50.0% | |
| AAGCGTTAGGGGGACATATG+CGG | + | tig0011965:6738-6757 | Msa1350900:CDS | 50.0% | |
| GACACGACAGGGAAAGTAGT+GGG | - | tig0011965:8462-8481 | None:intergenic | 50.0% | |
| TTGAAGGAGAGGACACGACA+GGG | - | tig0011965:8473-8492 | None:intergenic | 50.0% | |
| CGGCTACATGATGACCTTGA+AGG | - | tig0011965:8489-8508 | None:intergenic | 50.0% | |
| TCATGTAGCCGTTGTGTGAG+TGG | + | tig0011965:8498-8517 | Msa1350900:intron | 50.0% | |
| ACTTCAACACTTCGCAGGTG+AGG | + | tig0011965:8547-8566 | Msa1350900:intron | 50.0% | |
| CAAATCCACCAGCAGCAAAG+TGG | - | tig0011965:8591-8610 | None:intergenic | 50.0% | |
| ! | AGTTCTCACTTGGTGGTTCG+AGG | + | tig0011965:8669-8688 | Msa1350900:intron | 50.0% |
| GTTGCAGATCTAGCAACACC+GGG | - | tig0011965:8788-8807 | None:intergenic | 50.0% | |
| GCCGATATCTGCCTTAGAAG+TGG | + | tig0011965:8843-8862 | Msa1350900:intron | 50.0% | |
| GTTGTCGTGCATGGAGTTGA+TGG | + | tig0011965:9080-9099 | Msa1350900:CDS | 50.0% | |
| CTCATCAGGGCAAGCGTTAG+GGG | + | tig0011965:6727-6746 | Msa1350900:CDS | 55.0% | |
| TCATCAGGGCAAGCGTTAGG+GGG | + | tig0011965:6728-6747 | Msa1350900:CDS | 55.0% | |
| GGGGACATATGCGGAGACAT+AGG | + | tig0011965:6747-6766 | Msa1350900:CDS | 55.0% | |
| !! | ATGTGCTGCTTTGCGTGCAC+TGG | + | tig0011965:7896-7915 | Msa1350900:intron | 55.0% |
| !! | TGTGCTGCTTTGCGTGCACT+GGG | + | tig0011965:7897-7916 | Msa1350900:intron | 55.0% |
| !! | AAAGTAGTGGGTGGCGGCTA+GGG | - | tig0011965:8450-8469 | None:intergenic | 55.0% |
| !! | ACAGGGAAAGTAGTGGGTGG+CGG | - | tig0011965:8456-8475 | None:intergenic | 55.0% |
| ! | ACGACAGGGAAAGTAGTGGG+TGG | - | tig0011965:8459-8478 | None:intergenic | 55.0% |
| GGACACGACAGGGAAAGTAG+TGG | - | tig0011965:8463-8482 | None:intergenic | 55.0% | |
| CTTGAAGGAGAGGACACGAC+AGG | - | tig0011965:8474-8493 | None:intergenic | 55.0% | |
| CTGTCGTGTCCTCTCCTTCA+AGG | + | tig0011965:8472-8491 | Msa1350900:intron | 55.0% | |
| TAGCCGTTGTGTGAGTGGTG+TGG | + | tig0011965:8503-8522 | Msa1350900:intron | 55.0% | |
| CGACCACACCACTCACACAA+CGG | - | tig0011965:8509-8528 | None:intergenic | 55.0% | |
| ACCAGCAGCAAAGTGGACAC+CGG | - | tig0011965:8584-8603 | None:intergenic | 55.0% | |
| CAGAATCGCCGCCACTTCTA+AGG | - | tig0011965:8857-8876 | None:intergenic | 55.0% | |
| AGTAATAGGGGTCGCCGCGA+AGG | - | tig0011965:6648-6667 | None:intergenic | 60.0% | |
| !! | GAAAGTAGTGGGTGGCGGCT+AGG | - | tig0011965:8451-8470 | None:intergenic | 60.0% |
| TCCGGTGTCCACTTTGCTGC+TGG | + | tig0011965:8580-8599 | Msa1350900:intron | 60.0% | |
| GGTGTCCACTTTGCTGCTGG+TGG | + | tig0011965:8583-8602 | Msa1350900:intron | 60.0% | |
| GGTGGTTCGAGGTCTCCGTG+CGG | + | tig0011965:8680-8699 | Msa1350900:CDS | 65.0% | |
| CGAGTCACGGGGTGCAGCAC+CGG | - | tig0011965:8630-8649 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0011965 | gene | 6110 | 9109 | 6110 | ID=Msa1350900;Name=Msa1350900 |
| tig0011965 | mRNA | 6110 | 9109 | 6110 | ID=Msa1350900-mRNA-1;Parent=Msa1350900;Name=Msa1350900-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0|0|0.33|1|1|3|0|387 |
| tig0011965 | exon | 6110 | 6979 | 6110 | ID=Msa1350900-mRNA-1:exon:7588;Parent=Msa1350900-mRNA-1 |
| tig0011965 | exon | 8671 | 8826 | 8671 | ID=Msa1350900-mRNA-1:exon:7589;Parent=Msa1350900-mRNA-1 |
| tig0011965 | exon | 8972 | 9109 | 8972 | ID=Msa1350900-mRNA-1:exon:7590;Parent=Msa1350900-mRNA-1 |
| tig0011965 | CDS | 6110 | 6979 | 6110 | ID=Msa1350900-mRNA-1:cds;Parent=Msa1350900-mRNA-1 |
| tig0011965 | CDS | 8671 | 8826 | 8671 | ID=Msa1350900-mRNA-1:cds;Parent=Msa1350900-mRNA-1 |
| tig0011965 | CDS | 8972 | 9109 | 8972 | ID=Msa1350900-mRNA-1:cds;Parent=Msa1350900-mRNA-1 |
| Gene Sequence |
| Protein sequence |
