Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1351400 | XP_024636348.1 | 82.707 | 266 | 15 | 3 | 1 | 235 | 1 | 266 | 9.13e-149 | 443 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1351400 | sp|Q9SZL8|FRS5_ARATH | 31.474 | 251 | 135 | 5 | 20 | 235 | 76 | 324 | 4.22e-28 | 115 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1351400 | A0A072UB45 | 65.185 | 270 | 59 | 2 | 1 | 235 | 1 | 270 | 9.45e-120 | 353 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1351400 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1351400 | MtrunA17_Chr8g0363841 | 66.917 | 266 | 57 | 2 | 1 | 235 | 1 | 266 | 6.07e-122 | 361 |
| Msa1351400 | MtrunA17_Chr5g0440451 | 29.323 | 266 | 127 | 7 | 18 | 235 | 44 | 296 | 5.15e-30 | 117 |
| Msa1351400 | MtrunA17_Chr1g0202341 | 31.405 | 242 | 130 | 5 | 27 | 235 | 61 | 299 | 8.90e-30 | 116 |
| Msa1351400 | MtrunA17_Chr2g0287651 | 30.738 | 244 | 132 | 5 | 27 | 235 | 85 | 326 | 9.02e-30 | 116 |
| Msa1351400 | MtrunA17_Chr5g0441581 | 29.555 | 247 | 147 | 5 | 12 | 235 | 27 | 269 | 1.13e-28 | 113 |
| Msa1351400 | MtrunA17_Chr2g0296781 | 49.057 | 106 | 54 | 0 | 130 | 235 | 136 | 241 | 2.79e-27 | 109 |
| Msa1351400 | MtrunA17_Chr5g0448761 | 30.196 | 255 | 137 | 8 | 20 | 235 | 63 | 315 | 3.21e-27 | 109 |
| Msa1351400 | MtrunA17_Chr1g0203721 | 30.315 | 254 | 136 | 7 | 19 | 235 | 65 | 314 | 1.44e-26 | 107 |
| Msa1351400 | MtrunA17_Chr6g0458391 | 28.175 | 252 | 157 | 7 | 1 | 235 | 212 | 456 | 2.85e-26 | 106 |
| Msa1351400 | MtrunA17_Chr2g0287061 | 31.092 | 238 | 141 | 5 | 7 | 235 | 173 | 396 | 3.81e-26 | 106 |
| Msa1351400 | MtrunA17_Chr6g0477261 | 46.226 | 106 | 57 | 0 | 130 | 235 | 25 | 130 | 3.86e-25 | 103 |
| Msa1351400 | MtrunA17_Chr2g0291591 | 29.508 | 244 | 128 | 5 | 27 | 235 | 74 | 308 | 7.89e-25 | 102 |
| Msa1351400 | MtrunA17_Chr7g0258861 | 29.020 | 255 | 138 | 7 | 19 | 235 | 12 | 261 | 8.92e-24 | 97.1 |
| Msa1351400 | MtrunA17_Chr1g0207551 | 28.689 | 244 | 132 | 5 | 27 | 235 | 44 | 280 | 2.12e-23 | 98.2 |
| Msa1351400 | MtrunA17_Chr2g0291581 | 29.008 | 262 | 150 | 6 | 5 | 235 | 49 | 305 | 4.67e-23 | 97.4 |
| Msa1351400 | MtrunA17_Chr2g0324011 | 28.458 | 253 | 139 | 6 | 19 | 235 | 12 | 258 | 6.52e-22 | 94.0 |
| Msa1351400 | MtrunA17_Chr3g0082121 | 29.958 | 237 | 129 | 9 | 29 | 235 | 55 | 284 | 9.67e-22 | 93.6 |
| Msa1351400 | MtrunA17_Chr2g0329031 | 28.936 | 235 | 136 | 6 | 27 | 235 | 24 | 253 | 5.52e-21 | 91.3 |
| Msa1351400 | MtrunA17_Chr1g0198761 | 29.545 | 264 | 137 | 10 | 17 | 235 | 47 | 306 | 1.47e-20 | 90.1 |
| Msa1351400 | MtrunA17_Chr3g0080351 | 28.452 | 239 | 145 | 4 | 20 | 235 | 79 | 314 | 1.97e-19 | 86.7 |
| Msa1351400 | MtrunA17_Chr1g0203051 | 24.390 | 246 | 147 | 6 | 25 | 235 | 87 | 328 | 2.97e-18 | 83.2 |
| Msa1351400 | MtrunA17_Chr1g0196541 | 35.185 | 108 | 70 | 0 | 128 | 235 | 134 | 241 | 7.82e-18 | 82.0 |
| Msa1351400 | MtrunA17_Chr2g0276841 | 28.462 | 260 | 134 | 8 | 18 | 233 | 71 | 322 | 1.14e-17 | 81.6 |
| Msa1351400 | MtrunA17_Chr3g0118611 | 42.105 | 76 | 44 | 0 | 160 | 235 | 118 | 193 | 1.75e-17 | 81.3 |
| Msa1351400 | MtrunA17_Chr1g0164591 | 39.423 | 104 | 54 | 2 | 132 | 235 | 70 | 164 | 1.83e-17 | 79.7 |
| Msa1351400 | MtrunA17_Chr5g0431001 | 28.030 | 264 | 139 | 9 | 18 | 235 | 62 | 320 | 2.49e-17 | 80.5 |
| Msa1351400 | MtrunA17_Chr5g0448511 | 41.558 | 77 | 45 | 0 | 159 | 235 | 11 | 87 | 1.26e-14 | 72.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1351400 | AT4G38180.1 | 31.474 | 251 | 135 | 5 | 20 | 235 | 76 | 324 | 4.29e-29 | 115 |
| Msa1351400 | AT4G19990.3 | 27.586 | 261 | 149 | 8 | 1 | 235 | 1 | 247 | 2.08e-26 | 107 |
| Msa1351400 | AT4G19990.4 | 27.586 | 261 | 149 | 8 | 1 | 235 | 1 | 247 | 2.08e-26 | 107 |
| Msa1351400 | AT4G19990.6 | 27.586 | 261 | 149 | 8 | 1 | 235 | 1 | 247 | 2.25e-26 | 107 |
| Msa1351400 | AT4G19990.2 | 27.586 | 261 | 149 | 8 | 1 | 235 | 1 | 247 | 2.25e-26 | 107 |
| Msa1351400 | AT4G19990.5 | 27.586 | 261 | 149 | 8 | 1 | 235 | 1 | 247 | 2.38e-26 | 107 |
| Msa1351400 | AT4G19990.7 | 27.626 | 257 | 146 | 8 | 5 | 235 | 19 | 261 | 5.35e-26 | 106 |
| Msa1351400 | AT3G06250.2 | 30.667 | 225 | 138 | 4 | 16 | 235 | 189 | 400 | 7.12e-26 | 105 |
| Msa1351400 | AT3G06250.1 | 30.667 | 225 | 138 | 4 | 16 | 235 | 189 | 400 | 7.12e-26 | 105 |
| Msa1351400 | AT3G06250.3 | 30.667 | 225 | 138 | 4 | 16 | 235 | 189 | 400 | 7.12e-26 | 105 |
| Msa1351400 | AT4G19990.1 | 32.692 | 156 | 92 | 3 | 84 | 235 | 44 | 190 | 6.92e-23 | 97.1 |
| Msa1351400 | AT2G27110.2 | 27.984 | 243 | 139 | 6 | 13 | 235 | 45 | 271 | 1.66e-22 | 96.3 |
| Msa1351400 | AT2G27110.1 | 27.984 | 243 | 139 | 6 | 13 | 235 | 45 | 271 | 1.66e-22 | 96.3 |
| Msa1351400 | AT1G52520.1 | 29.167 | 240 | 143 | 6 | 19 | 235 | 87 | 322 | 2.63e-21 | 92.8 |
| Msa1351400 | AT4G15090.1 | 26.908 | 249 | 139 | 6 | 24 | 235 | 58 | 300 | 1.06e-20 | 90.9 |
| Msa1351400 | AT4G15090.5 | 26.908 | 249 | 139 | 6 | 24 | 235 | 58 | 300 | 1.06e-20 | 90.9 |
| Msa1351400 | AT4G15090.3 | 26.908 | 249 | 139 | 6 | 24 | 235 | 58 | 300 | 1.06e-20 | 90.9 |
| Msa1351400 | AT4G15090.2 | 26.908 | 249 | 139 | 6 | 24 | 235 | 58 | 300 | 1.06e-20 | 90.9 |
| Msa1351400 | AT4G15090.4 | 26.908 | 249 | 139 | 6 | 24 | 235 | 58 | 300 | 1.06e-20 | 90.9 |
| Msa1351400 | AT2G27110.3 | 47.368 | 76 | 40 | 0 | 160 | 235 | 51 | 126 | 4.95e-20 | 89.0 |
| Msa1351400 | AT5G18960.2 | 28.947 | 228 | 141 | 6 | 16 | 235 | 210 | 424 | 1.33e-19 | 87.8 |
| Msa1351400 | AT5G18960.1 | 28.947 | 228 | 141 | 6 | 16 | 235 | 210 | 424 | 1.33e-19 | 87.8 |
| Msa1351400 | AT3G22170.2 | 29.310 | 232 | 137 | 5 | 28 | 235 | 81 | 309 | 2.06e-19 | 87.0 |
| Msa1351400 | AT3G22170.1 | 29.310 | 232 | 137 | 5 | 28 | 235 | 81 | 309 | 2.06e-19 | 87.0 |
| Msa1351400 | AT1G76320.1 | 26.695 | 236 | 141 | 5 | 27 | 235 | 7 | 237 | 6.66e-17 | 79.7 |
| Msa1351400 | AT1G76320.4 | 26.695 | 236 | 141 | 5 | 27 | 235 | 7 | 237 | 6.66e-17 | 79.7 |
| Msa1351400 | AT1G76320.2 | 26.695 | 236 | 141 | 5 | 27 | 235 | 7 | 237 | 6.92e-17 | 79.7 |
| Msa1351400 | AT1G76320.3 | 26.695 | 236 | 141 | 5 | 27 | 235 | 7 | 237 | 7.48e-17 | 79.7 |
| Msa1351400 | AT2G32250.6 | 28.311 | 219 | 139 | 5 | 20 | 235 | 41 | 244 | 4.99e-16 | 77.4 |
| Msa1351400 | AT2G32250.1 | 28.311 | 219 | 139 | 5 | 20 | 235 | 41 | 244 | 4.99e-16 | 77.4 |
| Msa1351400 | AT2G32250.3 | 28.311 | 219 | 139 | 5 | 20 | 235 | 41 | 244 | 4.99e-16 | 77.4 |
| Msa1351400 | AT2G32250.2 | 28.311 | 219 | 139 | 5 | 20 | 235 | 41 | 244 | 5.27e-16 | 77.0 |
| Msa1351400 | AT2G32250.4 | 28.311 | 219 | 139 | 5 | 20 | 235 | 41 | 244 | 5.27e-16 | 77.0 |
| Msa1351400 | AT2G32250.5 | 28.311 | 219 | 139 | 5 | 20 | 235 | 41 | 244 | 5.61e-16 | 77.0 |
| Msa1351400 | AT2G32250.8 | 28.505 | 214 | 135 | 5 | 25 | 235 | 5 | 203 | 8.11e-16 | 76.6 |
| Msa1351400 | AT2G32250.7 | 28.505 | 214 | 135 | 5 | 25 | 235 | 5 | 203 | 8.84e-16 | 76.6 |
| Msa1351400 | AT1G10240.2 | 26.172 | 256 | 149 | 8 | 18 | 235 | 49 | 302 | 1.31e-15 | 75.9 |
| Msa1351400 | AT1G10240.1 | 26.172 | 256 | 149 | 8 | 18 | 235 | 49 | 302 | 1.31e-15 | 75.9 |
| Msa1351400 | AT1G80010.1 | 45.312 | 64 | 35 | 0 | 172 | 235 | 283 | 346 | 1.39e-12 | 67.0 |
| Msa1351400 | AT4G38170.1 | 37.209 | 86 | 49 | 2 | 151 | 235 | 8 | 89 | 7.38e-12 | 64.7 |
Find 40 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCGTTTGACTAATGTCTTT+TGG | 0.253639 | tig0012204:-85352 | Msa1351400:CDS |
| ATTATTCTTAAACCCTTCTT+TGG | 0.257903 | tig0012204:+85807 | None:intergenic |
| ACAAATCATGTCATACTTAT+TGG | 0.278809 | tig0012204:+85259 | None:intergenic |
| AAGTAGATTATGATTGCTTT+GGG | 0.312811 | tig0012204:-85313 | Msa1351400:CDS |
| AAAGTAGATTATGATTGCTT+TGG | 0.344821 | tig0012204:-85314 | Msa1351400:CDS |
| ATGTTAGCAAGGAAGGAGTT+TGG | 0.356508 | tig0012204:-85714 | Msa1351400:CDS |
| GGGTTTAAGAATAATGAATA+TGG | 0.371754 | tig0012204:-85799 | Msa1351400:CDS |
| AACAGTAAAACTCTTTAAAA+CGG | 0.389800 | tig0012204:+85830 | None:intergenic |
| CAAGCACATGCCTTCAAAAC+AGG | 0.394361 | tig0012204:-85907 | Msa1351400:CDS |
| TGATGATTTATCCCAACAAA+TGG | 0.395263 | tig0012204:+85233 | None:intergenic |
| ATGATTTGTGCCCCATTTGT+TGG | 0.413670 | tig0012204:-85245 | Msa1351400:CDS |
| GATGATTTATCCCAACAAAT+GGG | 0.422996 | tig0012204:+85234 | None:intergenic |
| CAGGATTTAGTGTAAGAAAA+GGG | 0.432600 | tig0012204:-85888 | Msa1351400:CDS |
| AAGTTGAAATTGATTGAAGC+TGG | 0.434164 | tig0012204:-85461 | Msa1351400:CDS |
| TGTCAATCAGTTGAAATTGA+TGG | 0.438803 | tig0012204:-85991 | Msa1351400:CDS |
| ACAGGATTTAGTGTAAGAAA+AGG | 0.440176 | tig0012204:-85889 | Msa1351400:CDS |
| AGGTTTAATGTTAGCAAGGA+AGG | 0.442161 | tig0012204:-85721 | Msa1351400:CDS |
| ACAGTAAAACTCTTTAAAAC+GGG | 0.452807 | tig0012204:+85831 | None:intergenic |
| TGATTTGTGCCCCATTTGTT+GGG | 0.458508 | tig0012204:-85244 | Msa1351400:CDS |
| AGTTGAAATTGATTGAAGCT+GGG | 0.466350 | tig0012204:-85460 | Msa1351400:CDS |
| GTCGGTGGATATAACAATCT+TGG | 0.477476 | tig0012204:-85524 | Msa1351400:CDS |
| CTTATGAAAGAGCTGATTCA+AGG | 0.480001 | tig0012204:-85765 | Msa1351400:CDS |
| CGCAACAAATGTCTTTGCTC+AGG | 0.482031 | tig0012204:+85647 | None:intergenic |
| TTGGAATTATTTAGGGGAAG+AGG | 0.485109 | tig0012204:-85546 | Msa1351400:intron |
| TTACAGTGTGCAGCTAGATC+AGG | 0.487131 | tig0012204:-85378 | Msa1351400:CDS |
| AAGGACAAATTGCAAAGCTA+TGG | 0.528165 | tig0012204:-85746 | Msa1351400:CDS |
| ATTTAGTGTAAGAAAAGGGA+GGG | 0.556280 | tig0012204:-85884 | Msa1351400:CDS |
| GATTTAGTGTAAGAAAAGGG+AGG | 0.567737 | tig0012204:-85885 | Msa1351400:CDS |
| TAATGAATATGGAGGTGAAG+TGG | 0.572461 | tig0012204:-85788 | Msa1351400:CDS |
| GGTGAGGTTTAATGTTAGCA+AGG | 0.579640 | tig0012204:-85725 | Msa1351400:CDS |
| TATTTAGGGGAAGAGGTCGG+TGG | 0.586341 | tig0012204:-85539 | Msa1351400:intron |
| AATTATTTAGGGGAAGAGGT+CGG | 0.592715 | tig0012204:-85542 | Msa1351400:intron |
| GTTGAAATTGATTGAAGCTG+GGG | 0.593382 | tig0012204:-85459 | Msa1351400:CDS |
| TTTAAGAATAATGAATATGG+AGG | 0.604513 | tig0012204:-85796 | Msa1351400:CDS |
| CTGAGCAAAGACATTTGTTG+CGG | 0.611498 | tig0012204:-85646 | Msa1351400:intron |
| CAAATTGCAAAGCTATGGTG+AGG | 0.629755 | tig0012204:-85741 | Msa1351400:CDS |
| ATGATTTATCCCAACAAATG+GGG | 0.633354 | tig0012204:+85235 | None:intergenic |
| AACAAATGTCTTTGCTCAGG+AGG | 0.641459 | tig0012204:+85650 | None:intergenic |
| TGCACACTGTAATAGAACAT+AGG | 0.647292 | tig0012204:+85389 | None:intergenic |
| AGTAGATTATGATTGCTTTG+GGG | 0.676504 | tig0012204:-85312 | Msa1351400:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACAAATATTTGGAATTATTT+AGG | - | tig0012204:85681-85700 | Msa1351400:CDS | 15.0% |
| !!! | CAAATATTTGGAATTATTTA+GGG | - | tig0012204:85682-85701 | Msa1351400:CDS | 15.0% |
| !!! | AAATATTTGGAATTATTTAG+GGG | - | tig0012204:85683-85702 | Msa1351400:CDS | 15.0% |
| !!! | ACAAATATTTGGAATTATTT+AGG | - | tig0012204:85681-85700 | Msa1351400:CDS | 15.0% |
| !!! | CAAATATTTGGAATTATTTA+GGG | - | tig0012204:85682-85701 | Msa1351400:CDS | 15.0% |
| !!! | AAATATTTGGAATTATTTAG+GGG | - | tig0012204:85683-85702 | Msa1351400:CDS | 15.0% |
| !!! | AACAGTAAAACTCTTTAAAA+CGG | + | tig0012204:85408-85427 | None:intergenic | 20.0% |
| !! | TTTAAGAATAATGAATATGG+AGG | - | tig0012204:85439-85458 | Msa1351400:CDS | 20.0% |
| !!! | AACAGTAAAACTCTTTAAAA+CGG | + | tig0012204:85408-85427 | None:intergenic | 20.0% |
| !! | TTTAAGAATAATGAATATGG+AGG | - | tig0012204:85439-85458 | Msa1351400:CDS | 20.0% |
| !!! | ACAGTAAAACTCTTTAAAAC+GGG | + | tig0012204:85407-85426 | None:intergenic | 25.0% |
| ! | ATTATTCTTAAACCCTTCTT+TGG | + | tig0012204:85431-85450 | None:intergenic | 25.0% |
| ! | GGGTTTAAGAATAATGAATA+TGG | - | tig0012204:85436-85455 | Msa1351400:CDS | 25.0% |
| ! | AGAAATATGTCAAATGTCAA+AGG | - | tig0012204:85618-85637 | Msa1351400:intron | 25.0% |
| ! | GTATACGAGTTACAAATATT+TGG | - | tig0012204:85670-85689 | Msa1351400:CDS | 25.0% |
| ! | AAAGTAGATTATGATTGCTT+TGG | - | tig0012204:85921-85940 | Msa1351400:CDS | 25.0% |
| ! | AAGTAGATTATGATTGCTTT+GGG | - | tig0012204:85922-85941 | Msa1351400:CDS | 25.0% |
| ! | ACAAATCATGTCATACTTAT+TGG | + | tig0012204:85979-85998 | None:intergenic | 25.0% |
| !!! | ACAGTAAAACTCTTTAAAAC+GGG | + | tig0012204:85407-85426 | None:intergenic | 25.0% |
| ! | ATTATTCTTAAACCCTTCTT+TGG | + | tig0012204:85431-85450 | None:intergenic | 25.0% |
| ! | GGGTTTAAGAATAATGAATA+TGG | - | tig0012204:85436-85455 | Msa1351400:CDS | 25.0% |
| ! | AGAAATATGTCAAATGTCAA+AGG | - | tig0012204:85618-85637 | Msa1351400:intron | 25.0% |
| ! | GTATACGAGTTACAAATATT+TGG | - | tig0012204:85670-85689 | Msa1351400:CDS | 25.0% |
| ! | AAAGTAGATTATGATTGCTT+TGG | - | tig0012204:85921-85940 | Msa1351400:CDS | 25.0% |
| ! | AAGTAGATTATGATTGCTTT+GGG | - | tig0012204:85922-85941 | Msa1351400:CDS | 25.0% |
| ! | ACAAATCATGTCATACTTAT+TGG | + | tig0012204:85979-85998 | None:intergenic | 25.0% |
| TGTCAATCAGTTGAAATTGA+TGG | - | tig0012204:85244-85263 | Msa1351400:CDS | 30.0% | |
| ! | GGATGCAAAGATATTTTTCT+TGG | - | tig0012204:85265-85284 | Msa1351400:CDS | 30.0% |
| !! | TACACTAAATCCTGTTTTGA+AGG | + | tig0012204:85341-85360 | None:intergenic | 30.0% |
| ACAGGATTTAGTGTAAGAAA+AGG | - | tig0012204:85346-85365 | Msa1351400:CDS | 30.0% | |
| CAGGATTTAGTGTAAGAAAA+GGG | - | tig0012204:85347-85366 | Msa1351400:CDS | 30.0% | |
| ATTTAGTGTAAGAAAAGGGA+GGG | - | tig0012204:85351-85370 | Msa1351400:CDS | 30.0% | |
| ! | AGTTTTACTGTTCCAAAGAA+GGG | - | tig0012204:85416-85435 | Msa1351400:CDS | 30.0% |
| GACATTTGACATATTTCTCA+TGG | + | tig0012204:85616-85635 | None:intergenic | 30.0% | |
| AATTCACCATAGACTTTATG+AGG | + | tig0012204:85647-85666 | None:intergenic | 30.0% | |
| ATAAAGTCTATGGTGAATTC+TGG | - | tig0012204:85648-85667 | Msa1351400:CDS | 30.0% | |
| AAGTTGAAATTGATTGAAGC+TGG | - | tig0012204:85774-85793 | Msa1351400:CDS | 30.0% | |
| AGTTGAAATTGATTGAAGCT+GGG | - | tig0012204:85775-85794 | Msa1351400:CDS | 30.0% | |
| AGTAGATTATGATTGCTTTG+GGG | - | tig0012204:85923-85942 | Msa1351400:CDS | 30.0% | |
| ATGATTTATCCCAACAAATG+GGG | + | tig0012204:86003-86022 | None:intergenic | 30.0% | |
| GATGATTTATCCCAACAAAT+GGG | + | tig0012204:86004-86023 | None:intergenic | 30.0% | |
| TGATGATTTATCCCAACAAA+TGG | + | tig0012204:86005-86024 | None:intergenic | 30.0% | |
| TGTCAATCAGTTGAAATTGA+TGG | - | tig0012204:85244-85263 | Msa1351400:CDS | 30.0% | |
| ! | GGATGCAAAGATATTTTTCT+TGG | - | tig0012204:85265-85284 | Msa1351400:CDS | 30.0% |
| !! | TACACTAAATCCTGTTTTGA+AGG | + | tig0012204:85341-85360 | None:intergenic | 30.0% |
| ACAGGATTTAGTGTAAGAAA+AGG | - | tig0012204:85346-85365 | Msa1351400:CDS | 30.0% | |
| CAGGATTTAGTGTAAGAAAA+GGG | - | tig0012204:85347-85366 | Msa1351400:CDS | 30.0% | |
| ATTTAGTGTAAGAAAAGGGA+GGG | - | tig0012204:85351-85370 | Msa1351400:CDS | 30.0% | |
| ! | AGTTTTACTGTTCCAAAGAA+GGG | - | tig0012204:85416-85435 | Msa1351400:CDS | 30.0% |
| GACATTTGACATATTTCTCA+TGG | + | tig0012204:85616-85635 | None:intergenic | 30.0% | |
| AATTCACCATAGACTTTATG+AGG | + | tig0012204:85647-85666 | None:intergenic | 30.0% | |
| ATAAAGTCTATGGTGAATTC+TGG | - | tig0012204:85648-85667 | Msa1351400:CDS | 30.0% | |
| AAGTTGAAATTGATTGAAGC+TGG | - | tig0012204:85774-85793 | Msa1351400:CDS | 30.0% | |
| AGTTGAAATTGATTGAAGCT+GGG | - | tig0012204:85775-85794 | Msa1351400:CDS | 30.0% | |
| AGTAGATTATGATTGCTTTG+GGG | - | tig0012204:85923-85942 | Msa1351400:CDS | 30.0% | |
| ATGATTTATCCCAACAAATG+GGG | + | tig0012204:86003-86022 | None:intergenic | 30.0% | |
| GATGATTTATCCCAACAAAT+GGG | + | tig0012204:86004-86023 | None:intergenic | 30.0% | |
| TGATGATTTATCCCAACAAA+TGG | + | tig0012204:86005-86024 | None:intergenic | 30.0% | |
| GATTTAGTGTAAGAAAAGGG+AGG | - | tig0012204:85350-85369 | Msa1351400:CDS | 35.0% | |
| ! | GAGTTTTACTGTTCCAAAGA+AGG | - | tig0012204:85415-85434 | Msa1351400:CDS | 35.0% |
| TAATGAATATGGAGGTGAAG+TGG | - | tig0012204:85447-85466 | Msa1351400:CDS | 35.0% | |
| ! | CTTATGAAAGAGCTGATTCA+AGG | - | tig0012204:85470-85489 | Msa1351400:CDS | 35.0% |
| AAGGACAAATTGCAAAGCTA+TGG | - | tig0012204:85489-85508 | Msa1351400:CDS | 35.0% | |
| AGGTTTAATGTTAGCAAGGA+AGG | - | tig0012204:85514-85533 | Msa1351400:CDS | 35.0% | |
| TTGGAATTATTTAGGGGAAG+AGG | - | tig0012204:85689-85708 | Msa1351400:CDS | 35.0% | |
| AATTATTTAGGGGAAGAGGT+CGG | - | tig0012204:85693-85712 | Msa1351400:CDS | 35.0% | |
| GTTGAAATTGATTGAAGCTG+GGG | - | tig0012204:85776-85795 | Msa1351400:CDS | 35.0% | |
| TGCACACTGTAATAGAACAT+AGG | + | tig0012204:85849-85868 | None:intergenic | 35.0% | |
| ! | CTCGTTTGACTAATGTCTTT+TGG | - | tig0012204:85883-85902 | Msa1351400:CDS | 35.0% |
| !! | ACTAATGTCTTTTGGAGAGA+TGG | - | tig0012204:85891-85910 | Msa1351400:CDS | 35.0% |
| GATTTAGTGTAAGAAAAGGG+AGG | - | tig0012204:85350-85369 | Msa1351400:CDS | 35.0% | |
| ! | GAGTTTTACTGTTCCAAAGA+AGG | - | tig0012204:85415-85434 | Msa1351400:CDS | 35.0% |
| TAATGAATATGGAGGTGAAG+TGG | - | tig0012204:85447-85466 | Msa1351400:CDS | 35.0% | |
| ! | CTTATGAAAGAGCTGATTCA+AGG | - | tig0012204:85470-85489 | Msa1351400:CDS | 35.0% |
| AAGGACAAATTGCAAAGCTA+TGG | - | tig0012204:85489-85508 | Msa1351400:CDS | 35.0% | |
| AGGTTTAATGTTAGCAAGGA+AGG | - | tig0012204:85514-85533 | Msa1351400:CDS | 35.0% | |
| TTGGAATTATTTAGGGGAAG+AGG | - | tig0012204:85689-85708 | Msa1351400:CDS | 35.0% | |
| AATTATTTAGGGGAAGAGGT+CGG | - | tig0012204:85693-85712 | Msa1351400:CDS | 35.0% | |
| GTTGAAATTGATTGAAGCTG+GGG | - | tig0012204:85776-85795 | Msa1351400:CDS | 35.0% | |
| TGCACACTGTAATAGAACAT+AGG | + | tig0012204:85849-85868 | None:intergenic | 35.0% | |
| ! | CTCGTTTGACTAATGTCTTT+TGG | - | tig0012204:85883-85902 | Msa1351400:CDS | 35.0% |
| !! | ACTAATGTCTTTTGGAGAGA+TGG | - | tig0012204:85891-85910 | Msa1351400:CDS | 35.0% |
| CAAATTGCAAAGCTATGGTG+AGG | - | tig0012204:85494-85513 | Msa1351400:CDS | 40.0% | |
| GGTGAGGTTTAATGTTAGCA+AGG | - | tig0012204:85510-85529 | Msa1351400:CDS | 40.0% | |
| ATGTTAGCAAGGAAGGAGTT+TGG | - | tig0012204:85521-85540 | Msa1351400:CDS | 40.0% | |
| AACAAATGTCTTTGCTCAGG+AGG | + | tig0012204:85588-85607 | None:intergenic | 40.0% | |
| ! | CTGAGCAAAGACATTTGTTG+CGG | - | tig0012204:85589-85608 | Msa1351400:intron | 40.0% |
| AGGAGACCTCATAAAGTCTA+TGG | - | tig0012204:85638-85657 | Msa1351400:intron | 40.0% | |
| GTCGGTGGATATAACAATCT+TGG | - | tig0012204:85711-85730 | Msa1351400:CDS | 40.0% | |
| ! | ATGATTTGTGCCCCATTTGT+TGG | - | tig0012204:85990-86009 | Msa1351400:CDS | 40.0% |
| ! | TGATTTGTGCCCCATTTGTT+GGG | - | tig0012204:85991-86010 | Msa1351400:CDS | 40.0% |
| CAAATTGCAAAGCTATGGTG+AGG | - | tig0012204:85494-85513 | Msa1351400:CDS | 40.0% | |
| GGTGAGGTTTAATGTTAGCA+AGG | - | tig0012204:85510-85529 | Msa1351400:CDS | 40.0% | |
| ATGTTAGCAAGGAAGGAGTT+TGG | - | tig0012204:85521-85540 | Msa1351400:CDS | 40.0% | |
| AACAAATGTCTTTGCTCAGG+AGG | + | tig0012204:85588-85607 | None:intergenic | 40.0% | |
| ! | CTGAGCAAAGACATTTGTTG+CGG | - | tig0012204:85589-85608 | Msa1351400:intron | 40.0% |
| AGGAGACCTCATAAAGTCTA+TGG | - | tig0012204:85638-85657 | Msa1351400:intron | 40.0% | |
| GTCGGTGGATATAACAATCT+TGG | - | tig0012204:85711-85730 | Msa1351400:CDS | 40.0% | |
| ! | ATGATTTGTGCCCCATTTGT+TGG | - | tig0012204:85990-86009 | Msa1351400:CDS | 40.0% |
| ! | TGATTTGTGCCCCATTTGTT+GGG | - | tig0012204:85991-86010 | Msa1351400:CDS | 40.0% |
| CAAGCACATGCCTTCAAAAC+AGG | - | tig0012204:85328-85347 | Msa1351400:CDS | 45.0% | |
| CGCAACAAATGTCTTTGCTC+AGG | + | tig0012204:85591-85610 | None:intergenic | 45.0% | |
| TTACAGTGTGCAGCTAGATC+AGG | - | tig0012204:85857-85876 | Msa1351400:CDS | 45.0% | |
| CAAGCACATGCCTTCAAAAC+AGG | - | tig0012204:85328-85347 | Msa1351400:CDS | 45.0% | |
| CGCAACAAATGTCTTTGCTC+AGG | + | tig0012204:85591-85610 | None:intergenic | 45.0% | |
| TTACAGTGTGCAGCTAGATC+AGG | - | tig0012204:85857-85876 | Msa1351400:CDS | 45.0% | |
| TATTTAGGGGAAGAGGTCGG+TGG | - | tig0012204:85696-85715 | Msa1351400:CDS | 50.0% | |
| TATTTAGGGGAAGAGGTCGG+TGG | - | tig0012204:85696-85715 | Msa1351400:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0012204 | gene | 85229 | 86028 | 85229 | ID=Msa1351400;Name=Msa1351400 |
| tig0012204 | mRNA | 85229 | 86028 | 85229 | ID=Msa1351400-mRNA-1;Parent=Msa1351400;Name=Msa1351400-mRNA-1;_AED=0.09;_eAED=0.14;_QI=0|0|0|1|1|1|2|0|235 |
| tig0012204 | exon | 85647 | 86028 | 85647 | ID=Msa1351400-mRNA-1:exon:7730;Parent=Msa1351400-mRNA-1 |
| tig0012204 | exon | 85229 | 85554 | 85229 | ID=Msa1351400-mRNA-1:exon:7729;Parent=Msa1351400-mRNA-1 |
| tig0012204 | CDS | 85647 | 86028 | 85647 | ID=Msa1351400-mRNA-1:cds;Parent=Msa1351400-mRNA-1 |
| tig0012204 | CDS | 85229 | 85554 | 85229 | ID=Msa1351400-mRNA-1:cds;Parent=Msa1351400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
