Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1352680 | GAU40839.1 | 80.056 | 356 | 67 | 3 | 16 | 370 | 30 | 382 | 0.0 | 606 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1352680 | sp|Q9SWG3|FAR1_ARATH | 33.815 | 346 | 223 | 4 | 31 | 371 | 33 | 377 | 2.39e-67 | 230 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1352680 | A0A2Z6P9Q3 | 80.056 | 356 | 67 | 3 | 16 | 370 | 30 | 382 | 0.0 | 606 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1352680 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1352680 | MtrunA17_Chr2g0296781 | 78.165 | 316 | 68 | 1 | 53 | 368 | 1 | 315 | 0.0 | 539 |
| Msa1352680 | MtrunA17_Chr1g0196541 | 63.438 | 320 | 116 | 1 | 53 | 372 | 1 | 319 | 1.09e-150 | 442 |
| Msa1352680 | MtrunA17_Chr6g0477261 | 84.951 | 206 | 31 | 0 | 165 | 370 | 1 | 206 | 1.36e-130 | 389 |
| Msa1352680 | MtrunA17_Chr5g0441581 | 49.701 | 334 | 154 | 4 | 44 | 372 | 23 | 347 | 1.67e-108 | 333 |
| Msa1352680 | MtrunA17_Chr1g0202341 | 38.438 | 333 | 190 | 5 | 48 | 371 | 50 | 376 | 2.36e-75 | 246 |
| Msa1352680 | MtrunA17_Chr2g0291591 | 35.817 | 349 | 219 | 3 | 18 | 364 | 33 | 378 | 9.27e-75 | 241 |
| Msa1352680 | MtrunA17_Chr2g0329031 | 37.685 | 337 | 194 | 6 | 41 | 372 | 6 | 331 | 5.73e-74 | 243 |
| Msa1352680 | MtrunA17_Chr5g0448761 | 37.135 | 342 | 203 | 7 | 43 | 373 | 54 | 394 | 6.84e-71 | 236 |
| Msa1352680 | MtrunA17_Chr2g0291581 | 37.249 | 349 | 202 | 6 | 27 | 371 | 47 | 382 | 2.53e-69 | 230 |
| Msa1352680 | MtrunA17_Chr1g0207551 | 34.356 | 326 | 211 | 2 | 46 | 369 | 31 | 355 | 4.46e-66 | 223 |
| Msa1352680 | MtrunA17_Chr3g0080351 | 35.174 | 344 | 182 | 6 | 43 | 369 | 70 | 389 | 7.33e-62 | 212 |
| Msa1352680 | MtrunA17_Chr8g0363841 | 35.088 | 342 | 199 | 7 | 45 | 371 | 10 | 343 | 3.02e-58 | 200 |
| Msa1352680 | MtrunA17_Chr2g0287651 | 32.099 | 324 | 214 | 3 | 53 | 370 | 79 | 402 | 3.62e-56 | 197 |
| Msa1352680 | MtrunA17_Chr2g0324011 | 31.832 | 333 | 216 | 4 | 46 | 371 | 7 | 335 | 7.77e-56 | 192 |
| Msa1352680 | MtrunA17_Chr5g0440451 | 32.164 | 342 | 204 | 6 | 48 | 371 | 42 | 373 | 1.82e-52 | 187 |
| Msa1352680 | MtrunA17_Chr2g0276841 | 31.322 | 348 | 206 | 10 | 39 | 365 | 60 | 395 | 3.52e-49 | 176 |
| Msa1352680 | MtrunA17_Chr7g0258861 | 32.404 | 287 | 188 | 3 | 42 | 322 | 3 | 289 | 3.95e-49 | 167 |
| Msa1352680 | MtrunA17_Chr1g0203721 | 31.722 | 331 | 214 | 5 | 51 | 372 | 65 | 392 | 5.61e-48 | 174 |
| Msa1352680 | MtrunA17_Chr6g0458391 | 29.360 | 344 | 214 | 7 | 38 | 373 | 213 | 535 | 7.75e-48 | 172 |
| Msa1352680 | MtrunA17_Chr1g0198761 | 31.361 | 338 | 206 | 8 | 52 | 369 | 50 | 381 | 8.39e-47 | 170 |
| Msa1352680 | MtrunA17_Chr5g0448511 | 43.636 | 165 | 92 | 1 | 207 | 371 | 1 | 164 | 1.06e-43 | 159 |
| Msa1352680 | MtrunA17_Chr3g0118611 | 46.452 | 155 | 83 | 0 | 219 | 373 | 118 | 272 | 1.41e-43 | 160 |
| Msa1352680 | MtrunA17_Chr2g0287061 | 31.889 | 323 | 180 | 9 | 48 | 366 | 182 | 468 | 1.41e-43 | 161 |
| Msa1352680 | MtrunA17_Chr3g0082121 | 30.812 | 357 | 222 | 9 | 28 | 371 | 17 | 361 | 1.80e-43 | 160 |
| Msa1352680 | MtrunA17_Chr1g0203051 | 28.767 | 365 | 242 | 9 | 23 | 371 | 43 | 405 | 2.26e-42 | 156 |
| Msa1352680 | MtrunA17_Chr1g0164591 | 35.270 | 241 | 147 | 4 | 131 | 371 | 10 | 241 | 1.03e-40 | 146 |
| Msa1352680 | MtrunA17_Chr5g0431001 | 27.139 | 339 | 225 | 5 | 49 | 369 | 61 | 395 | 8.71e-40 | 147 |
| Msa1352680 | MtrunA17_Chr2g0294841 | 27.795 | 331 | 219 | 7 | 49 | 363 | 45 | 371 | 2.30e-38 | 145 |
| Msa1352680 | MtrunA17_Chr2g0290391 | 24.860 | 358 | 250 | 6 | 25 | 364 | 27 | 383 | 1.39e-32 | 129 |
| Msa1352680 | MtrunA17_Chr6g0476431 | 60.465 | 86 | 34 | 0 | 53 | 138 | 1 | 86 | 4.07e-32 | 116 |
| Msa1352680 | MtrunA17_Chr6g0451441 | 29.515 | 227 | 143 | 6 | 29 | 242 | 63 | 285 | 1.27e-21 | 95.9 |
| Msa1352680 | MtrunA17_Chr7g0233911 | 32.639 | 144 | 81 | 6 | 28 | 165 | 20 | 153 | 5.42e-12 | 64.7 |
| Msa1352680 | MtrunA17_Chr2g0329361 | 32.174 | 115 | 62 | 4 | 48 | 151 | 60 | 169 | 1.45e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1352680 | AT4G15090.1 | 33.815 | 346 | 223 | 4 | 31 | 371 | 33 | 377 | 2.43e-68 | 230 |
| Msa1352680 | AT4G15090.5 | 33.815 | 346 | 223 | 4 | 31 | 371 | 33 | 377 | 2.43e-68 | 230 |
| Msa1352680 | AT4G15090.3 | 33.815 | 346 | 223 | 4 | 31 | 371 | 33 | 377 | 2.43e-68 | 230 |
| Msa1352680 | AT4G15090.2 | 33.815 | 346 | 223 | 4 | 31 | 371 | 33 | 377 | 2.43e-68 | 230 |
| Msa1352680 | AT4G15090.4 | 33.815 | 346 | 223 | 4 | 31 | 371 | 33 | 377 | 2.43e-68 | 230 |
| Msa1352680 | AT4G38180.1 | 33.623 | 345 | 221 | 4 | 36 | 373 | 60 | 403 | 1.10e-65 | 223 |
| Msa1352680 | AT1G76320.3 | 36.875 | 320 | 189 | 5 | 53 | 368 | 1 | 311 | 1.66e-65 | 220 |
| Msa1352680 | AT1G76320.1 | 36.875 | 320 | 189 | 5 | 53 | 368 | 1 | 311 | 3.61e-65 | 220 |
| Msa1352680 | AT1G76320.4 | 36.875 | 320 | 189 | 5 | 53 | 368 | 1 | 311 | 3.61e-65 | 220 |
| Msa1352680 | AT1G76320.2 | 36.875 | 320 | 189 | 5 | 53 | 368 | 1 | 311 | 4.00e-65 | 220 |
| Msa1352680 | AT1G80010.1 | 35.028 | 354 | 204 | 9 | 36 | 371 | 78 | 423 | 1.77e-61 | 210 |
| Msa1352680 | AT3G22170.2 | 33.718 | 347 | 190 | 6 | 42 | 371 | 63 | 386 | 3.21e-59 | 205 |
| Msa1352680 | AT3G22170.1 | 33.718 | 347 | 190 | 6 | 42 | 371 | 63 | 386 | 3.21e-59 | 205 |
| Msa1352680 | AT1G52520.1 | 35.542 | 332 | 195 | 7 | 45 | 371 | 81 | 398 | 1.64e-56 | 196 |
| Msa1352680 | AT2G27110.2 | 33.898 | 354 | 207 | 6 | 24 | 373 | 20 | 350 | 1.24e-55 | 196 |
| Msa1352680 | AT2G27110.1 | 33.898 | 354 | 207 | 6 | 24 | 373 | 20 | 350 | 1.24e-55 | 196 |
| Msa1352680 | AT2G32250.5 | 32.817 | 323 | 174 | 5 | 48 | 368 | 37 | 318 | 1.47e-49 | 178 |
| Msa1352680 | AT2G32250.6 | 32.817 | 323 | 174 | 5 | 48 | 368 | 37 | 318 | 1.99e-49 | 178 |
| Msa1352680 | AT2G32250.1 | 32.817 | 323 | 174 | 5 | 48 | 368 | 37 | 318 | 1.99e-49 | 178 |
| Msa1352680 | AT2G32250.3 | 32.817 | 323 | 174 | 5 | 48 | 368 | 37 | 318 | 1.99e-49 | 178 |
| Msa1352680 | AT2G32250.2 | 32.817 | 323 | 174 | 5 | 48 | 368 | 37 | 318 | 2.03e-49 | 178 |
| Msa1352680 | AT2G32250.4 | 32.817 | 323 | 174 | 5 | 48 | 368 | 37 | 318 | 2.03e-49 | 178 |
| Msa1352680 | AT2G32250.8 | 32.704 | 318 | 171 | 5 | 53 | 368 | 1 | 277 | 1.32e-48 | 175 |
| Msa1352680 | AT2G32250.7 | 32.704 | 318 | 171 | 5 | 53 | 368 | 1 | 277 | 1.41e-48 | 175 |
| Msa1352680 | AT3G06250.2 | 31.325 | 332 | 189 | 6 | 39 | 368 | 180 | 474 | 6.13e-48 | 173 |
| Msa1352680 | AT3G06250.1 | 31.325 | 332 | 189 | 6 | 39 | 368 | 180 | 474 | 6.13e-48 | 173 |
| Msa1352680 | AT3G06250.3 | 31.325 | 332 | 189 | 6 | 39 | 368 | 180 | 474 | 6.13e-48 | 173 |
| Msa1352680 | AT5G18960.2 | 31.790 | 324 | 183 | 10 | 48 | 368 | 210 | 498 | 1.27e-45 | 167 |
| Msa1352680 | AT5G18960.1 | 31.790 | 324 | 183 | 10 | 48 | 368 | 210 | 498 | 1.27e-45 | 167 |
| Msa1352680 | AT2G27110.3 | 39.000 | 200 | 114 | 1 | 174 | 373 | 14 | 205 | 3.53e-44 | 162 |
| Msa1352680 | AT4G19990.3 | 30.946 | 349 | 165 | 7 | 52 | 371 | 24 | 325 | 3.69e-43 | 160 |
| Msa1352680 | AT4G19990.4 | 30.946 | 349 | 165 | 7 | 52 | 371 | 24 | 325 | 3.69e-43 | 160 |
| Msa1352680 | AT4G19990.5 | 30.946 | 349 | 165 | 7 | 52 | 371 | 24 | 325 | 3.93e-43 | 160 |
| Msa1352680 | AT4G19990.7 | 30.946 | 349 | 165 | 7 | 52 | 371 | 38 | 339 | 4.11e-43 | 160 |
| Msa1352680 | AT4G19990.6 | 30.946 | 349 | 165 | 7 | 52 | 371 | 24 | 325 | 4.66e-43 | 160 |
| Msa1352680 | AT4G19990.2 | 30.946 | 349 | 165 | 7 | 52 | 371 | 24 | 325 | 4.66e-43 | 160 |
| Msa1352680 | AT1G10240.2 | 29.134 | 381 | 230 | 13 | 9 | 365 | 9 | 373 | 5.17e-43 | 159 |
| Msa1352680 | AT1G10240.1 | 29.134 | 381 | 230 | 13 | 9 | 365 | 9 | 373 | 5.17e-43 | 159 |
| Msa1352680 | AT4G19990.1 | 32.566 | 304 | 155 | 6 | 71 | 371 | 12 | 268 | 7.40e-42 | 155 |
| Msa1352680 | AT5G28530.1 | 27.011 | 348 | 219 | 7 | 49 | 370 | 55 | 393 | 1.10e-35 | 138 |
| Msa1352680 | AT5G28530.3 | 27.011 | 348 | 219 | 7 | 49 | 370 | 55 | 393 | 1.12e-35 | 138 |
| Msa1352680 | AT5G28530.2 | 27.011 | 348 | 219 | 7 | 49 | 370 | 55 | 393 | 1.12e-35 | 138 |
| Msa1352680 | AT4G38170.1 | 43.421 | 152 | 81 | 2 | 221 | 371 | 19 | 166 | 8.77e-34 | 132 |
| Msa1352680 | AT2G43280.1 | 33.088 | 136 | 81 | 4 | 25 | 154 | 2 | 133 | 1.47e-12 | 66.6 |
Find 55 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGAATTATGCAAGATGTTT+AGG | 0.244212 | tig0012682:+13141 | Msa1352680:CDS |
| TATGCAAGATGTTTAGGTTT+TGG | 0.256539 | tig0012682:+13147 | Msa1352680:CDS |
| TCCATCCTGGACAGTAATTA+TGG | 0.256727 | tig0012682:-13937 | None:intergenic |
| CACCACCGATGGCGAGCTTT+CGG | 0.283474 | tig0012682:-13990 | None:intergenic |
| TGGAACAATTACTATTTCTA+AGG | 0.295449 | tig0012682:+13335 | Msa1352680:CDS |
| TAGTATCCTCCTTCGACAAT+AGG | 0.312589 | tig0012682:-13854 | None:intergenic |
| AGGGCTGCTTATGAGTATTT+TGG | 0.315150 | tig0012682:+13723 | Msa1352680:CDS |
| CTAAAATATCTTGATTTGCT+TGG | 0.342688 | tig0012682:-13390 | None:intergenic |
| ATATAGACCCTAGTATAAAA+AGG | 0.351811 | tig0012682:+13424 | Msa1352680:CDS |
| TTTCTTGGTTGTTCACTACT+TGG | 0.357896 | tig0012682:+13883 | Msa1352680:CDS |
| ACCACCGATGGCGAGCTTTC+GGG | 0.377799 | tig0012682:-13989 | None:intergenic |
| CATGGTCAGTCAGTTCTGTT+AGG | 0.383640 | tig0012682:+13825 | Msa1352680:CDS |
| CTTGTGGCATATAATGAAAA+AGG | 0.386165 | tig0012682:+14013 | Msa1352680:CDS |
| AGTATCCTCCTTCGACAATA+GGG | 0.392582 | tig0012682:-13853 | None:intergenic |
| GGATATGATAACCTTACATT+CGG | 0.409109 | tig0012682:+13519 | Msa1352680:CDS |
| TTAAATTTCATGCCAACCTT+AGG | 0.424975 | tig0012682:-13090 | None:intergenic |
| AAGTGAGGCGGCTTCGACTT+GGG | 0.432744 | tig0012682:+13571 | Msa1352680:CDS |
| ATATTTATTTGTTAAGTAAG+TGG | 0.436838 | tig0012682:-13766 | None:intergenic |
| CATTCTTCATTGCTCCATCC+TGG | 0.443971 | tig0012682:-13950 | None:intergenic |
| GATATGATAACCTTACATTC+GGG | 0.457280 | tig0012682:+13520 | Msa1352680:CDS |
| CTCGCCATCGGTGGTGCTTG+TGG | 0.467564 | tig0012682:+13997 | Msa1352680:CDS |
| ACTCCAACAAAAGGAGCAAA+AGG | 0.476605 | tig0012682:-13795 | None:intergenic |
| TTTGGGCAGATGCGAGATGT+AGG | 0.485083 | tig0012682:+13703 | Msa1352680:CDS |
| TACTTACATTAATCCCAGCT+TGG | 0.488151 | tig0012682:-13464 | None:intergenic |
| TAGCATGAAAACACACTGTA+AGG | 0.490277 | tig0012682:+13284 | Msa1352680:CDS |
| TTTGTTGGAGTAAATCATCA+TGG | 0.506547 | tig0012682:+13807 | Msa1352680:CDS |
| AGGCGGCTTCGACTTGGGAC+AGG | 0.507987 | tig0012682:+13576 | Msa1352680:CDS |
| TTGGGCAGATGCGAGATGTA+GGG | 0.512318 | tig0012682:+13704 | Msa1352680:CDS |
| TGATGATTTACTCCAACAAA+AGG | 0.515106 | tig0012682:-13804 | None:intergenic |
| AAAGTGAGGCGGCTTCGACT+TGG | 0.518819 | tig0012682:+13570 | Msa1352680:CDS |
| TCCCGAAAGCTCGCCATCGG+TGG | 0.527948 | tig0012682:+13988 | Msa1352680:CDS |
| TTGGAGGTTAATGACCAAGC+TGG | 0.528235 | tig0012682:+13450 | Msa1352680:CDS |
| TGTTAAGTAAGTGGTGTCAA+AGG | 0.534449 | tig0012682:-13757 | None:intergenic |
| ACAAGCCATAATTACTGTCC+AGG | 0.535094 | tig0012682:+13932 | Msa1352680:CDS |
| TGGAGGTTAATGACCAAGCT+GGG | 0.539674 | tig0012682:+13451 | Msa1352680:CDS |
| TACTCACATAGCTTCTTGCA+CGG | 0.540398 | tig0012682:-13233 | None:intergenic |
| AAATGAAGATGATGAACCTA+AGG | 0.544931 | tig0012682:+13074 | Msa1352680:CDS |
| GAAGATGATGAACCTAAGGT+TGG | 0.554642 | tig0012682:+13078 | Msa1352680:CDS |
| TCTTCCCGAAAGCTCGCCAT+CGG | 0.556384 | tig0012682:+13985 | Msa1352680:CDS |
| AATGTATGTGTGTCTTCAGA+TGG | 0.571681 | tig0012682:+13315 | Msa1352680:CDS |
| ATGGCGAGCTTTCGGGAAGA+CGG | 0.577337 | tig0012682:-13982 | None:intergenic |
| AGGTTGCGCCCTATTGTCGA+AGG | 0.587751 | tig0012682:+13845 | Msa1352680:CDS |
| TGGACAGTAATTATGGCTTG+TGG | 0.592262 | tig0012682:-13930 | None:intergenic |
| GAAACTACATTGACAAAGTG+AGG | 0.593331 | tig0012682:+13556 | Msa1352680:CDS |
| GCCATAATTACTGTCCAGGA+TGG | 0.604005 | tig0012682:+13936 | Msa1352680:CDS |
| ACTTGGTTAGAATGTATGCG+TGG | 0.623148 | tig0012682:+13900 | Msa1352680:CDS |
| AGCAATGAAGAATGCAGTTG+AGG | 0.631682 | tig0012682:+13959 | Msa1352680:CDS |
| TCTATGGTTGTTGAAGCAAG+TGG | 0.641961 | tig0012682:+13498 | Msa1352680:CDS |
| CTTGGTTAGAATGTATGCGT+GGG | 0.645599 | tig0012682:+13901 | Msa1352680:CDS |
| TCACATAAATGAAAATTGTG+AGG | 0.656952 | tig0012682:+13038 | Msa1352680:CDS |
| TTGCGCCCTATTGTCGAAGG+AGG | 0.658239 | tig0012682:+13848 | Msa1352680:CDS |
| TATGCCACAAGCACCACCGA+TGG | 0.685228 | tig0012682:-14001 | None:intergenic |
| ATATATGGAAGAGACAATCA+CGG | 0.693219 | tig0012682:+12631 | None:intergenic |
| ATATGATAACCTTACATTCG+GGG | 0.715139 | tig0012682:+13521 | Msa1352680:CDS |
| ACTACATTGACAAAGTGAGG+CGG | 0.739143 | tig0012682:+13559 | Msa1352680:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAATGTAAGTAGAAATTTT+CGG | + | tig0012682:13475-13494 | Msa1352680:CDS | 15.0% |
| !!! | TCTAACAAAATAATTTTGAA+TGG | - | tig0012682:13613-13632 | None:intergenic | 15.0% |
| !!! | TAGTGAATTTTATTATGTAA+TGG | + | tig0012682:13647-13666 | Msa1352680:CDS | 15.0% |
| !!! | ATATTTATTTGTTAAGTAAG+TGG | - | tig0012682:13769-13788 | None:intergenic | 15.0% |
| !!! | TTAATGTAAGTAGAAATTTT+CGG | + | tig0012682:13475-13494 | Msa1352680:CDS | 15.0% |
| !!! | TCTAACAAAATAATTTTGAA+TGG | - | tig0012682:13613-13632 | None:intergenic | 15.0% |
| !!! | TAGTGAATTTTATTATGTAA+TGG | + | tig0012682:13647-13666 | Msa1352680:CDS | 15.0% |
| !!! | ATATTTATTTGTTAAGTAAG+TGG | - | tig0012682:13769-13788 | None:intergenic | 15.0% |
| !! | ATCAACTGAATTAAAAGTAA+AGG | - | tig0012682:12934-12953 | None:intergenic | 20.0% |
| !!! | TAAAAAATTTGTTGCATTAG+TGG | + | tig0012682:12972-12991 | Msa1352680:intron | 20.0% |
| !!! | GAAAAAAGTATTTTACTCTA+GGG | + | tig0012682:13205-13224 | Msa1352680:CDS | 20.0% |
| !!! | ATTTGGCTTTAAAAGATTTT+TGG | - | tig0012682:13262-13281 | None:intergenic | 20.0% |
| !!! | ATTTTATTATGTAATGGATG+TGG | + | tig0012682:13653-13672 | Msa1352680:CDS | 20.0% |
| !! | ATCAACTGAATTAAAAGTAA+AGG | - | tig0012682:12934-12953 | None:intergenic | 20.0% |
| !!! | TAAAAAATTTGTTGCATTAG+TGG | + | tig0012682:12972-12991 | Msa1352680:intron | 20.0% |
| !!! | GAAAAAAGTATTTTACTCTA+GGG | + | tig0012682:13205-13224 | Msa1352680:CDS | 20.0% |
| !!! | ATTTGGCTTTAAAAGATTTT+TGG | - | tig0012682:13262-13281 | None:intergenic | 20.0% |
| !!! | ATTTTATTATGTAATGGATG+TGG | + | tig0012682:13653-13672 | Msa1352680:CDS | 20.0% |
| ! | AATCAGAACATATAAGGTTA+TGG | - | tig0012682:12700-12719 | None:intergenic | 25.0% |
| ! | GAACAAAATCAGAACATATA+AGG | - | tig0012682:12706-12725 | None:intergenic | 25.0% |
| ! | GGAAATCAAATTTCAATTGA+TGG | - | tig0012682:12832-12851 | None:intergenic | 25.0% |
| ! | TCACATAAATGAAAATTGTG+AGG | + | tig0012682:13038-13057 | Msa1352680:CDS | 25.0% |
| ! | AAGAATTATGCAAGATGTTT+AGG | + | tig0012682:13141-13160 | Msa1352680:CDS | 25.0% |
| ! | TAGCAAAATCAGTACAAAAA+AGG | + | tig0012682:13173-13192 | Msa1352680:CDS | 25.0% |
| ! | AGCAAAATCAGTACAAAAAA+GGG | + | tig0012682:13174-13193 | Msa1352680:CDS | 25.0% |
| !!! | GGAAAAAAGTATTTTACTCT+AGG | + | tig0012682:13204-13223 | Msa1352680:CDS | 25.0% |
| !!! | TGGAACAATTACTATTTCTA+AGG | + | tig0012682:13335-13354 | Msa1352680:CDS | 25.0% |
| !!! | CTAAAATATCTTGATTTGCT+TGG | - | tig0012682:13393-13412 | None:intergenic | 25.0% |
| ! | ATATAGACCCTAGTATAAAA+AGG | + | tig0012682:13424-13443 | Msa1352680:CDS | 25.0% |
| !!! | TCGTTTACGAAATGTTTTTT+GGG | + | tig0012682:13686-13705 | Msa1352680:CDS | 25.0% |
| !!! | AGGATACTAAAACTTTTTCT+TGG | + | tig0012682:13868-13887 | Msa1352680:CDS | 25.0% |
| ! | AATCAGAACATATAAGGTTA+TGG | - | tig0012682:12700-12719 | None:intergenic | 25.0% |
| ! | GAACAAAATCAGAACATATA+AGG | - | tig0012682:12706-12725 | None:intergenic | 25.0% |
| ! | GGAAATCAAATTTCAATTGA+TGG | - | tig0012682:12832-12851 | None:intergenic | 25.0% |
| ! | TCACATAAATGAAAATTGTG+AGG | + | tig0012682:13038-13057 | Msa1352680:CDS | 25.0% |
| ! | AAGAATTATGCAAGATGTTT+AGG | + | tig0012682:13141-13160 | Msa1352680:CDS | 25.0% |
| ! | TAGCAAAATCAGTACAAAAA+AGG | + | tig0012682:13173-13192 | Msa1352680:CDS | 25.0% |
| ! | AGCAAAATCAGTACAAAAAA+GGG | + | tig0012682:13174-13193 | Msa1352680:CDS | 25.0% |
| !!! | GGAAAAAAGTATTTTACTCT+AGG | + | tig0012682:13204-13223 | Msa1352680:CDS | 25.0% |
| !!! | TGGAACAATTACTATTTCTA+AGG | + | tig0012682:13335-13354 | Msa1352680:CDS | 25.0% |
| !!! | CTAAAATATCTTGATTTGCT+TGG | - | tig0012682:13393-13412 | None:intergenic | 25.0% |
| ! | ATATAGACCCTAGTATAAAA+AGG | + | tig0012682:13424-13443 | Msa1352680:CDS | 25.0% |
| !!! | TCGTTTACGAAATGTTTTTT+GGG | + | tig0012682:13686-13705 | Msa1352680:CDS | 25.0% |
| !!! | AGGATACTAAAACTTTTTCT+TGG | + | tig0012682:13868-13887 | Msa1352680:CDS | 25.0% |
| !!! | GTTTTGATTTTGGACAATCA+CGG | + | tig0012682:12659-12678 | Msa1352680:CDS | 30.0% |
| AACATATAAGGTTATGGAGA+AGG | - | tig0012682:12694-12713 | None:intergenic | 30.0% | |
| ! | CAAATTTCAATTGATGGTTG+AGG | - | tig0012682:12826-12845 | None:intergenic | 30.0% |
| TTGAACTGGATGCTAAAATA+GGG | - | tig0012682:12853-12872 | None:intergenic | 30.0% | |
| GAATTAAAAGTAAAGGCAAC+AGG | - | tig0012682:12927-12946 | None:intergenic | 30.0% | |
| AAATGAAGATGATGAACCTA+AGG | + | tig0012682:13074-13093 | Msa1352680:CDS | 30.0% | |
| TTAAATTTCATGCCAACCTT+AGG | - | tig0012682:13093-13112 | None:intergenic | 30.0% | |
| !! | TATGCAAGATGTTTAGGTTT+TGG | + | tig0012682:13147-13166 | Msa1352680:CDS | 30.0% |
| ! | CCAATCTCCTTTTTATACTA+GGG | - | tig0012682:13434-13453 | None:intergenic | 30.0% |
| ! | TCCAATCTCCTTTTTATACT+AGG | - | tig0012682:13435-13454 | None:intergenic | 30.0% |
| TAGTATAAAAAGGAGATTGG+AGG | + | tig0012682:13434-13453 | Msa1352680:CDS | 30.0% | |
| ! | AAGTAGAAATTTTCGGTCTA+TGG | + | tig0012682:13482-13501 | Msa1352680:CDS | 30.0% |
| GGATATGATAACCTTACATT+CGG | + | tig0012682:13519-13538 | Msa1352680:CDS | 30.0% | |
| GATATGATAACCTTACATTC+GGG | + | tig0012682:13520-13539 | Msa1352680:CDS | 30.0% | |
| ATATGATAACCTTACATTCG+GGG | + | tig0012682:13521-13540 | Msa1352680:CDS | 30.0% | |
| !!! | GTCGTTTACGAAATGTTTTT+TGG | + | tig0012682:13685-13704 | Msa1352680:CDS | 30.0% |
| TGATGATTTACTCCAACAAA+AGG | - | tig0012682:13807-13826 | None:intergenic | 30.0% | |
| TTTGTTGGAGTAAATCATCA+TGG | + | tig0012682:13807-13826 | Msa1352680:CDS | 30.0% | |
| CTTGTGGCATATAATGAAAA+AGG | + | tig0012682:14013-14032 | Msa1352680:CDS | 30.0% | |
| !!! | GTTTTGATTTTGGACAATCA+CGG | + | tig0012682:12659-12678 | Msa1352680:CDS | 30.0% |
| AACATATAAGGTTATGGAGA+AGG | - | tig0012682:12694-12713 | None:intergenic | 30.0% | |
| ! | CAAATTTCAATTGATGGTTG+AGG | - | tig0012682:12826-12845 | None:intergenic | 30.0% |
| TTGAACTGGATGCTAAAATA+GGG | - | tig0012682:12853-12872 | None:intergenic | 30.0% | |
| GAATTAAAAGTAAAGGCAAC+AGG | - | tig0012682:12927-12946 | None:intergenic | 30.0% | |
| AAATGAAGATGATGAACCTA+AGG | + | tig0012682:13074-13093 | Msa1352680:CDS | 30.0% | |
| TTAAATTTCATGCCAACCTT+AGG | - | tig0012682:13093-13112 | None:intergenic | 30.0% | |
| !! | TATGCAAGATGTTTAGGTTT+TGG | + | tig0012682:13147-13166 | Msa1352680:CDS | 30.0% |
| ! | CCAATCTCCTTTTTATACTA+GGG | - | tig0012682:13434-13453 | None:intergenic | 30.0% |
| ! | TCCAATCTCCTTTTTATACT+AGG | - | tig0012682:13435-13454 | None:intergenic | 30.0% |
| TAGTATAAAAAGGAGATTGG+AGG | + | tig0012682:13434-13453 | Msa1352680:CDS | 30.0% | |
| ! | AAGTAGAAATTTTCGGTCTA+TGG | + | tig0012682:13482-13501 | Msa1352680:CDS | 30.0% |
| GGATATGATAACCTTACATT+CGG | + | tig0012682:13519-13538 | Msa1352680:CDS | 30.0% | |
| GATATGATAACCTTACATTC+GGG | + | tig0012682:13520-13539 | Msa1352680:CDS | 30.0% | |
| ATATGATAACCTTACATTCG+GGG | + | tig0012682:13521-13540 | Msa1352680:CDS | 30.0% | |
| !!! | GTCGTTTACGAAATGTTTTT+TGG | + | tig0012682:13685-13704 | Msa1352680:CDS | 30.0% |
| TGATGATTTACTCCAACAAA+AGG | - | tig0012682:13807-13826 | None:intergenic | 30.0% | |
| TTTGTTGGAGTAAATCATCA+TGG | + | tig0012682:13807-13826 | Msa1352680:CDS | 30.0% | |
| CTTGTGGCATATAATGAAAA+AGG | + | tig0012682:14013-14032 | Msa1352680:CDS | 30.0% | |
| CTTGAACTGGATGCTAAAAT+AGG | - | tig0012682:12854-12873 | None:intergenic | 35.0% | |
| CTTACTATTGTCTCTTGAAC+TGG | - | tig0012682:12867-12886 | None:intergenic | 35.0% | |
| AGTACAAAAAAGGGAGATGA+TGG | + | tig0012682:13183-13202 | Msa1352680:CDS | 35.0% | |
| ! | TGTGTTTTCATGCTAGGATT+TGG | - | tig0012682:13279-13298 | None:intergenic | 35.0% |
| ! | TTACAGTGTGTTTTCATGCT+AGG | - | tig0012682:13285-13304 | None:intergenic | 35.0% |
| TAGCATGAAAACACACTGTA+AGG | + | tig0012682:13284-13303 | Msa1352680:CDS | 35.0% | |
| AATGTATGTGTGTCTTCAGA+TGG | + | tig0012682:13315-13334 | Msa1352680:CDS | 35.0% | |
| CCCTAGTATAAAAAGGAGAT+TGG | + | tig0012682:13431-13450 | Msa1352680:CDS | 35.0% | |
| TACTTACATTAATCCCAGCT+TGG | - | tig0012682:13467-13486 | None:intergenic | 35.0% | |
| GAAACTACATTGACAAAGTG+AGG | + | tig0012682:13556-13575 | Msa1352680:CDS | 35.0% | |
| ! | TGTTAAGTAAGTGGTGTCAA+AGG | - | tig0012682:13760-13779 | None:intergenic | 35.0% |
| TTTCTTGGTTGTTCACTACT+TGG | + | tig0012682:13883-13902 | Msa1352680:CDS | 35.0% | |
| CTTGAACTGGATGCTAAAAT+AGG | - | tig0012682:12854-12873 | None:intergenic | 35.0% | |
| CTTACTATTGTCTCTTGAAC+TGG | - | tig0012682:12867-12886 | None:intergenic | 35.0% | |
| AGTACAAAAAAGGGAGATGA+TGG | + | tig0012682:13183-13202 | Msa1352680:CDS | 35.0% | |
| ! | TGTGTTTTCATGCTAGGATT+TGG | - | tig0012682:13279-13298 | None:intergenic | 35.0% |
| ! | TTACAGTGTGTTTTCATGCT+AGG | - | tig0012682:13285-13304 | None:intergenic | 35.0% |
| TAGCATGAAAACACACTGTA+AGG | + | tig0012682:13284-13303 | Msa1352680:CDS | 35.0% | |
| AATGTATGTGTGTCTTCAGA+TGG | + | tig0012682:13315-13334 | Msa1352680:CDS | 35.0% | |
| CCCTAGTATAAAAAGGAGAT+TGG | + | tig0012682:13431-13450 | Msa1352680:CDS | 35.0% | |
| TACTTACATTAATCCCAGCT+TGG | - | tig0012682:13467-13486 | None:intergenic | 35.0% | |
| GAAACTACATTGACAAAGTG+AGG | + | tig0012682:13556-13575 | Msa1352680:CDS | 35.0% | |
| ! | TGTTAAGTAAGTGGTGTCAA+AGG | - | tig0012682:13760-13779 | None:intergenic | 35.0% |
| TTTCTTGGTTGTTCACTACT+TGG | + | tig0012682:13883-13902 | Msa1352680:CDS | 35.0% | |
| GACGACAACGAGTTTCAAAA+CGG | - | tig0012682:12764-12783 | None:intergenic | 40.0% | |
| GTAGCAATGCTGATAAACAG+AGG | - | tig0012682:12798-12817 | None:intergenic | 40.0% | |
| GAAGATGATGAACCTAAGGT+TGG | + | tig0012682:13078-13097 | Msa1352680:CDS | 40.0% | |
| TACTCACATAGCTTCTTGCA+CGG | - | tig0012682:13236-13255 | None:intergenic | 40.0% | |
| TCTATGGTTGTTGAAGCAAG+TGG | + | tig0012682:13498-13517 | Msa1352680:CDS | 40.0% | |
| ! | CATCTTTTTCCCCGAATGTA+AGG | - | tig0012682:13533-13552 | None:intergenic | 40.0% |
| ACTACATTGACAAAGTGAGG+CGG | + | tig0012682:13559-13578 | Msa1352680:CDS | 40.0% | |
| ! | AGGGCTGCTTATGAGTATTT+TGG | + | tig0012682:13723-13742 | Msa1352680:CDS | 40.0% |
| ! | ATGCCTTTTGCTCCTTTTGT+TGG | + | tig0012682:13792-13811 | Msa1352680:CDS | 40.0% |
| ACTCCAACAAAAGGAGCAAA+AGG | - | tig0012682:13798-13817 | None:intergenic | 40.0% | |
| AGTATCCTCCTTCGACAATA+GGG | - | tig0012682:13856-13875 | None:intergenic | 40.0% | |
| TAGTATCCTCCTTCGACAAT+AGG | - | tig0012682:13857-13876 | None:intergenic | 40.0% | |
| ACTTGGTTAGAATGTATGCG+TGG | + | tig0012682:13900-13919 | Msa1352680:CDS | 40.0% | |
| CTTGGTTAGAATGTATGCGT+GGG | + | tig0012682:13901-13920 | Msa1352680:CDS | 40.0% | |
| TGGACAGTAATTATGGCTTG+TGG | - | tig0012682:13933-13952 | None:intergenic | 40.0% | |
| ACAAGCCATAATTACTGTCC+AGG | + | tig0012682:13932-13951 | Msa1352680:CDS | 40.0% | |
| TCCATCCTGGACAGTAATTA+TGG | - | tig0012682:13940-13959 | None:intergenic | 40.0% | |
| AGCAATGAAGAATGCAGTTG+AGG | + | tig0012682:13959-13978 | Msa1352680:CDS | 40.0% | |
| ! | GCGAGTCTACTCAATTTTTC+TGG | - | tig0012682:14041-14060 | None:intergenic | 40.0% |
| GACGACAACGAGTTTCAAAA+CGG | - | tig0012682:12764-12783 | None:intergenic | 40.0% | |
| GTAGCAATGCTGATAAACAG+AGG | - | tig0012682:12798-12817 | None:intergenic | 40.0% | |
| GAAGATGATGAACCTAAGGT+TGG | + | tig0012682:13078-13097 | Msa1352680:CDS | 40.0% | |
| TACTCACATAGCTTCTTGCA+CGG | - | tig0012682:13236-13255 | None:intergenic | 40.0% | |
| TCTATGGTTGTTGAAGCAAG+TGG | + | tig0012682:13498-13517 | Msa1352680:CDS | 40.0% | |
| ! | CATCTTTTTCCCCGAATGTA+AGG | - | tig0012682:13533-13552 | None:intergenic | 40.0% |
| ACTACATTGACAAAGTGAGG+CGG | + | tig0012682:13559-13578 | Msa1352680:CDS | 40.0% | |
| ! | AGGGCTGCTTATGAGTATTT+TGG | + | tig0012682:13723-13742 | Msa1352680:CDS | 40.0% |
| ! | ATGCCTTTTGCTCCTTTTGT+TGG | + | tig0012682:13792-13811 | Msa1352680:CDS | 40.0% |
| ACTCCAACAAAAGGAGCAAA+AGG | - | tig0012682:13798-13817 | None:intergenic | 40.0% | |
| AGTATCCTCCTTCGACAATA+GGG | - | tig0012682:13856-13875 | None:intergenic | 40.0% | |
| TAGTATCCTCCTTCGACAAT+AGG | - | tig0012682:13857-13876 | None:intergenic | 40.0% | |
| ACTTGGTTAGAATGTATGCG+TGG | + | tig0012682:13900-13919 | Msa1352680:CDS | 40.0% | |
| CTTGGTTAGAATGTATGCGT+GGG | + | tig0012682:13901-13920 | Msa1352680:CDS | 40.0% | |
| TGGACAGTAATTATGGCTTG+TGG | - | tig0012682:13933-13952 | None:intergenic | 40.0% | |
| ACAAGCCATAATTACTGTCC+AGG | + | tig0012682:13932-13951 | Msa1352680:CDS | 40.0% | |
| TCCATCCTGGACAGTAATTA+TGG | - | tig0012682:13940-13959 | None:intergenic | 40.0% | |
| AGCAATGAAGAATGCAGTTG+AGG | + | tig0012682:13959-13978 | Msa1352680:CDS | 40.0% | |
| ! | GCGAGTCTACTCAATTTTTC+TGG | - | tig0012682:14041-14060 | None:intergenic | 40.0% |
| !!! | CACGGCACACGTTTTGATTT+TGG | + | tig0012682:12649-12668 | Msa1352680:CDS | 45.0% |
| TTCAAAACGGCGGTGAATGT+TGG | - | tig0012682:12751-12770 | None:intergenic | 45.0% | |
| GACAACGAGTTTCAAAACGG+CGG | - | tig0012682:12761-12780 | None:intergenic | 45.0% | |
| TTGGAGGTTAATGACCAAGC+TGG | + | tig0012682:13450-13469 | Msa1352680:CDS | 45.0% | |
| TGGAGGTTAATGACCAAGCT+GGG | + | tig0012682:13451-13470 | Msa1352680:CDS | 45.0% | |
| CATGGTCAGTCAGTTCTGTT+AGG | + | tig0012682:13825-13844 | Msa1352680:CDS | 45.0% | |
| GCCATAATTACTGTCCAGGA+TGG | + | tig0012682:13936-13955 | Msa1352680:CDS | 45.0% | |
| CATTCTTCATTGCTCCATCC+TGG | - | tig0012682:13953-13972 | None:intergenic | 45.0% | |
| !!! | CACGGCACACGTTTTGATTT+TGG | + | tig0012682:12649-12668 | Msa1352680:CDS | 45.0% |
| TTCAAAACGGCGGTGAATGT+TGG | - | tig0012682:12751-12770 | None:intergenic | 45.0% | |
| GACAACGAGTTTCAAAACGG+CGG | - | tig0012682:12761-12780 | None:intergenic | 45.0% | |
| TTGGAGGTTAATGACCAAGC+TGG | + | tig0012682:13450-13469 | Msa1352680:CDS | 45.0% | |
| TGGAGGTTAATGACCAAGCT+GGG | + | tig0012682:13451-13470 | Msa1352680:CDS | 45.0% | |
| CATGGTCAGTCAGTTCTGTT+AGG | + | tig0012682:13825-13844 | Msa1352680:CDS | 45.0% | |
| GCCATAATTACTGTCCAGGA+TGG | + | tig0012682:13936-13955 | Msa1352680:CDS | 45.0% | |
| CATTCTTCATTGCTCCATCC+TGG | - | tig0012682:13953-13972 | None:intergenic | 45.0% | |
| TTTGGGCAGATGCGAGATGT+AGG | + | tig0012682:13703-13722 | Msa1352680:CDS | 50.0% | |
| TTGGGCAGATGCGAGATGTA+GGG | + | tig0012682:13704-13723 | Msa1352680:CDS | 50.0% | |
| TTTGGGCAGATGCGAGATGT+AGG | + | tig0012682:13703-13722 | Msa1352680:CDS | 50.0% | |
| TTGGGCAGATGCGAGATGTA+GGG | + | tig0012682:13704-13723 | Msa1352680:CDS | 50.0% | |
| !! | CGGCGGTGAATGTTGGTAAC+TGG | - | tig0012682:12744-12763 | None:intergenic | 55.0% |
| AAAGTGAGGCGGCTTCGACT+TGG | + | tig0012682:13570-13589 | Msa1352680:CDS | 55.0% | |
| AAGTGAGGCGGCTTCGACTT+GGG | + | tig0012682:13571-13590 | Msa1352680:CDS | 55.0% | |
| AGGTTGCGCCCTATTGTCGA+AGG | + | tig0012682:13845-13864 | Msa1352680:CDS | 55.0% | |
| TTGCGCCCTATTGTCGAAGG+AGG | + | tig0012682:13848-13867 | Msa1352680:CDS | 55.0% | |
| ATGGCGAGCTTTCGGGAAGA+CGG | - | tig0012682:13985-14004 | None:intergenic | 55.0% | |
| TCTTCCCGAAAGCTCGCCAT+CGG | + | tig0012682:13985-14004 | Msa1352680:CDS | 55.0% | |
| TATGCCACAAGCACCACCGA+TGG | - | tig0012682:14004-14023 | None:intergenic | 55.0% | |
| !! | CGGCGGTGAATGTTGGTAAC+TGG | - | tig0012682:12744-12763 | None:intergenic | 55.0% |
| AAAGTGAGGCGGCTTCGACT+TGG | + | tig0012682:13570-13589 | Msa1352680:CDS | 55.0% | |
| AAGTGAGGCGGCTTCGACTT+GGG | + | tig0012682:13571-13590 | Msa1352680:CDS | 55.0% | |
| AGGTTGCGCCCTATTGTCGA+AGG | + | tig0012682:13845-13864 | Msa1352680:CDS | 55.0% | |
| TTGCGCCCTATTGTCGAAGG+AGG | + | tig0012682:13848-13867 | Msa1352680:CDS | 55.0% | |
| ATGGCGAGCTTTCGGGAAGA+CGG | - | tig0012682:13985-14004 | None:intergenic | 55.0% | |
| TCTTCCCGAAAGCTCGCCAT+CGG | + | tig0012682:13985-14004 | Msa1352680:CDS | 55.0% | |
| TATGCCACAAGCACCACCGA+TGG | - | tig0012682:14004-14023 | None:intergenic | 55.0% | |
| ACCACCGATGGCGAGCTTTC+GGG | - | tig0012682:13992-14011 | None:intergenic | 60.0% | |
| CACCACCGATGGCGAGCTTT+CGG | - | tig0012682:13993-14012 | None:intergenic | 60.0% | |
| ACCACCGATGGCGAGCTTTC+GGG | - | tig0012682:13992-14011 | None:intergenic | 60.0% | |
| CACCACCGATGGCGAGCTTT+CGG | - | tig0012682:13993-14012 | None:intergenic | 60.0% | |
| !! | AGGCGGCTTCGACTTGGGAC+AGG | + | tig0012682:13576-13595 | Msa1352680:CDS | 65.0% |
| TCCCGAAAGCTCGCCATCGG+TGG | + | tig0012682:13988-14007 | Msa1352680:CDS | 65.0% | |
| CTCGCCATCGGTGGTGCTTG+TGG | + | tig0012682:13997-14016 | Msa1352680:CDS | 65.0% | |
| !! | AGGCGGCTTCGACTTGGGAC+AGG | + | tig0012682:13576-13595 | Msa1352680:CDS | 65.0% |
| TCCCGAAAGCTCGCCATCGG+TGG | + | tig0012682:13988-14007 | Msa1352680:CDS | 65.0% | |
| CTCGCCATCGGTGGTGCTTG+TGG | + | tig0012682:13997-14016 | Msa1352680:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0012682 | gene | 12635 | 14067 | 12635 | ID=Msa1352680;Name=Msa1352680 |
| tig0012682 | mRNA | 12635 | 14067 | 12635 | ID=Msa1352680-mRNA-1;Parent=Msa1352680;Name=Msa1352680-mRNA-1;_AED=0.11;_eAED=0.29;_QI=0|0|0|0.5|1|1|2|0|373 |
| tig0012682 | exon | 12635 | 12680 | 12635 | ID=Msa1352680-mRNA-1:exon:8280;Parent=Msa1352680-mRNA-1 |
| tig0012682 | exon | 12992 | 14067 | 12992 | ID=Msa1352680-mRNA-1:exon:8281;Parent=Msa1352680-mRNA-1 |
| tig0012682 | CDS | 12635 | 12680 | 12635 | ID=Msa1352680-mRNA-1:cds;Parent=Msa1352680-mRNA-1 |
| tig0012682 | CDS | 12992 | 14067 | 12992 | ID=Msa1352680-mRNA-1:cds;Parent=Msa1352680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
