AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1352800

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1352800 MtrunA17_Chr7g0236851 88.754 658 72 2 1 657 1 657 0.0 1111
Msa1352800 MtrunA17_Chr6g0468561 43.348 699 315 20 1 656 1 661 1.18e-146 441
Msa1352800 MtrunA17_Chr4g0037781 82.447 188 33 0 239 426 1 188 2.87e-105 317
Msa1352800 MtrunA17_Chr3g0125811 39.164 383 217 7 284 656 193 569 1.87e-77 258
Msa1352800 MtrunA17_Chr1g0159461 39.733 375 210 6 292 656 223 591 2.76e-73 247
Msa1352800 MtrunA17_Chr2g0319091 39.262 298 169 5 365 656 287 578 4.18e-59 208
Msa1352800 MtrunA17_Chr4g0037771 78.448 116 25 0 296 411 1 116 4.66e-59 194
Msa1352800 MtrunA17_Chr4g0076091 32.979 376 235 6 292 656 173 542 1.54e-56 201
Msa1352800 MtrunA17_Chr5g0447691 30.843 415 266 7 252 656 140 543 2.00e-56 200
Msa1352800 MtrunA17_Chr3g0101141 33.333 342 214 6 322 656 207 541 1.23e-53 192
Msa1352800 MtrunA17_Chr5g0445331 32.021 381 235 11 292 656 159 531 1.34e-51 187
Msa1352800 MtrunA17_Chr2g0290241 30.792 341 224 6 322 656 90 424 2.11e-46 170
Msa1352800 MtrunA17_Chr7g0224271 32.441 299 177 8 365 656 392 672 7.99e-37 146
Msa1352800 MtrunA17_Chr8g0357601 29.912 341 210 8 334 656 222 551 2.89e-33 134
Msa1352800 MtrunA17_Chr8g0376381 28.610 374 237 13 293 656 168 521 1.36e-31 129
Msa1352800 MtrunA17_Chr3g0110971 30.792 341 201 10 336 656 261 586 9.84e-31 127
Msa1352800 MtrunA17_Chr2g0306641 28.158 380 236 13 295 656 126 486 2.18e-29 122
Msa1352800 MtrunA17_Chr4g0057891 29.870 308 196 8 357 656 224 519 5.25e-29 121
Msa1352800 MtrunA17_Chr4g0057291 31.227 269 168 8 398 656 400 661 3.02e-27 117
Msa1352800 MtrunA17_Chr4g0031721 25.824 364 241 8 310 656 332 683 1.70e-26 115
Msa1352800 MtrunA17_Chr7g0270031 27.206 272 190 3 389 656 286 553 1.24e-25 111
Msa1352800 MtrunA17_Chr4g0031741 28.839 267 179 6 399 656 385 649 2.94e-25 110
Msa1352800 MtrunA17_Chr7g0245601 26.216 370 244 11 297 656 441 791 2.21e-24 108
Msa1352800 MtrunA17_Chr2g0294461 30.241 291 187 8 376 656 300 584 2.26e-24 107
Msa1352800 MtrunA17_Chr4g0039661 34.298 242 140 8 375 610 276 504 2.92e-23 104
Msa1352800 MtrunA17_Chr2g0328381 23.356 441 311 10 226 656 217 640 1.37e-22 102
Msa1352800 MtrunA17_Chr2g0328341 24.665 373 264 8 295 657 273 638 2.59e-22 101
Msa1352800 MtrunA17_Chr2g0328391 25.342 292 200 7 375 656 385 668 2.74e-22 101
Msa1352800 MtrunA17_Chr4g0031711 22.039 363 262 7 310 657 377 733 9.87e-22 100
Msa1352800 MtrunA17_Chr4g0031731 24.601 313 222 6 350 654 317 623 1.43e-21 99.4
Msa1352800 MtrunA17_Chr4g0038761 28.028 289 182 10 375 656 172 441 2.17e-21 97.8
Msa1352800 MtrunA17_Chr3g0085681 26.176 340 190 8 370 656 104 435 2.23e-21 97.4
Msa1352800 MtrunA17_Chr2g0294471 28.425 292 192 8 375 656 291 575 2.61e-21 98.2
Msa1352800 MtrunA17_Chr2g0328371 27.686 242 159 5 375 610 16 247 4.00e-21 93.2
Msa1352800 MtrunA17_Chr7g0238891 23.691 363 250 9 310 656 388 739 5.82e-21 97.8
Msa1352800 MtrunA17_Chr2g0328431 25.357 280 182 6 395 656 383 653 1.51e-20 96.3
Msa1352800 MtrunA17_Chr4g0031701 22.684 313 228 6 350 654 317 623 4.36e-20 94.7
Msa1352800 MtrunA17_Chr2g0328411 24.911 281 201 5 384 656 375 653 5.24e-20 94.7
Msa1352800 MtrunA17_Chr2g0328401 27.027 222 156 3 394 610 386 606 8.32e-19 90.9
Msa1352800 MtrunA17_Chr1g0200401 26.884 398 235 16 295 656 81 458 1.95e-18 88.6
Msa1352800 MtrunA17_Chr5g0396491 34.437 151 92 3 511 656 329 477 5.54e-18 87.4
Msa1352800 MtrunA17_Chr4g0038851 34.000 150 94 3 511 656 320 468 7.10e-18 87.0
Msa1352800 MtrunA17_Chr3g0085361 25.513 341 190 8 370 656 19 349 7.20e-18 85.9
Msa1352800 MtrunA17_Chr5g0401421 25.938 320 193 9 375 656 132 445 7.88e-18 86.7
Msa1352800 MtrunA17_Chr2g0328361 23.450 371 244 8 295 656 275 614 1.37e-17 86.7
Msa1352800 MtrunA17_Chr1g0183641 25.203 369 253 10 295 656 124 476 6.30e-17 84.0
Msa1352800 MtrunA17_Chr1g0194621 25.000 272 195 4 389 656 251 517 2.09e-15 79.7
Msa1352800 MtrunA17_Chr5g0401131 24.913 289 201 7 379 656 206 489 2.35e-13 72.8
Msa1352800 MtrunA17_Chr4g0053901 23.810 231 146 3 456 656 237 467 8.07e-12 68.2
Msa1352800 MtrunA17_Chr5g0424131 27.331 311 195 12 365 656 200 498 8.64e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1352800 AT5G52510.1 40.000 645 300 20 55 656 39 639 3.99e-121 374
Msa1352800 AT1G21450.1 32.239 518 306 14 156 656 103 592 2.08e-68 234
Msa1352800 AT5G48150.1 31.746 441 269 12 237 656 60 489 3.25e-58 204
Msa1352800 AT5G48150.4 31.746 441 269 12 237 656 60 489 3.25e-58 204
Msa1352800 AT5G48150.2 31.746 441 269 12 237 656 60 489 3.25e-58 204
Msa1352800 AT5G48150.3 31.746 441 269 12 237 656 60 489 3.25e-58 204
Msa1352800 AT2G04890.1 32.708 373 232 8 292 656 51 412 5.63e-55 193
Msa1352800 AT1G50600.3 33.913 345 206 7 323 656 192 525 2.98e-51 186
Msa1352800 AT1G50600.1 33.913 345 206 7 323 656 263 596 4.03e-51 187
Msa1352800 AT1G50600.2 33.913 345 206 7 323 656 267 600 5.84e-51 187
Msa1352800 AT4G17230.1 31.481 378 237 8 292 656 156 524 6.67e-51 185
Msa1352800 AT4G17230.2 31.481 378 237 8 292 656 156 524 6.67e-51 185
Msa1352800 AT1G66350.1 30.275 327 204 10 336 656 197 505 1.11e-33 135
Msa1352800 AT3G03450.1 33.103 290 177 7 374 656 265 544 9.98e-33 133
Msa1352800 AT5G17490.1 32.424 330 198 11 336 656 202 515 1.52e-31 129
Msa1352800 AT3G50650.1 31.544 298 178 7 375 656 254 541 9.19e-30 124
Msa1352800 AT1G14920.1 30.211 331 205 12 336 656 214 528 4.19e-29 122
Msa1352800 AT2G01570.1 30.422 332 203 11 336 656 266 580 5.99e-29 122
Msa1352800 AT2G29065.1 25.397 378 265 8 295 657 253 628 4.60e-28 120
Msa1352800 AT5G66770.1 34.298 242 143 7 375 609 300 532 5.76e-27 116
Msa1352800 AT2G29060.1 24.828 290 206 5 375 656 406 691 2.41e-24 108
Msa1352800 AT2G29060.2 24.828 290 206 5 375 656 369 654 2.64e-24 108
Msa1352800 AT5G59450.1 26.765 340 221 12 335 656 268 597 3.64e-24 107
Msa1352800 AT1G07530.1 23.446 354 263 4 310 656 412 764 2.52e-23 105
Msa1352800 AT2G37650.2 23.747 379 258 8 295 656 336 700 2.73e-23 105
Msa1352800 AT2G37650.1 23.747 379 258 8 295 656 348 712 2.88e-23 105
Msa1352800 AT3G54220.1 28.671 286 183 9 375 656 381 649 7.99e-23 103
Msa1352800 AT3G46600.2 26.552 290 196 6 376 656 89 370 1.26e-22 100
Msa1352800 AT3G46600.1 26.552 290 196 6 376 656 297 578 3.91e-22 101
Msa1352800 AT3G46600.3 26.552 290 196 6 376 656 265 546 5.01e-22 100
Msa1352800 AT1G07520.1 24.000 375 261 9 301 657 325 693 1.54e-21 100
Msa1352800 AT1G07520.3 24.000 375 261 9 301 657 326 694 1.64e-21 99.8
Msa1352800 AT1G07520.2 24.064 374 260 9 301 656 161 528 5.08e-21 97.8
Msa1352800 AT1G07520.4 24.064 374 260 9 301 656 161 528 5.08e-21 97.8
Msa1352800 AT1G63100.2 29.680 219 138 5 398 610 384 592 2.17e-19 93.2
Msa1352800 AT1G63100.1 29.680 219 138 5 398 610 359 567 2.65e-19 92.8
Msa1352800 AT4G37650.1 25.307 407 264 13 280 656 132 528 2.06e-18 89.4
Msa1352800 AT1G50420.1 33.333 150 95 3 511 656 330 478 3.42e-18 88.6
Msa1352800 AT5G41920.1 29.352 293 173 14 374 656 131 399 1.29e-17 85.9
Msa1352800 AT3G49950.1 26.073 303 192 8 375 657 118 408 6.88e-17 84.0
Msa1352800 AT1G55580.1 27.027 296 194 7 375 656 157 444 7.79e-15 77.8
Msa1352800 AT2G45160.1 24.706 340 216 14 335 656 321 638 3.05e-12 70.1

Find 117 sgRNAs with CRISPR-Local

Find 292 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAATTCGATAGTTGGTTAT+TGG 0.173769 tig0012839:-75342 Msa1352800:CDS
GAAATCAATCAGAGAACTTT+TGG 0.191309 tig0012839:-74982 Msa1352800:CDS
CTCTCAATGTTGCATCTTCT+TGG 0.201520 tig0012839:-74371 Msa1352800:CDS
TTGCTTCAAGCTCTCTTTCA+TGG 0.207322 tig0012839:-75201 Msa1352800:CDS
GAATGGTCACTAGTTGTTTC+TGG 0.207414 tig0012839:-75626 Msa1352800:CDS
CTCAATTTCTGAAGGCAAAA+TGG 0.207878 tig0012839:-75417 Msa1352800:CDS
TCCAAGCATTGTCACAGTTT+TGG 0.258937 tig0012839:-74754 Msa1352800:CDS
GAGAGATTAAAGCTTGAAAA+AGG 0.266629 tig0012839:-74618 Msa1352800:CDS
TGAGACTCACATGGAGTTCT+TGG 0.270826 tig0012839:+75066 None:intergenic
GAGTTAGTTCGATGAGATTT+AGG 0.271519 tig0012839:+74910 None:intergenic
GCGATATGGTTGAGAAATTA+TGG 0.273880 tig0012839:+76200 None:intergenic
GGCTTCAAGGATTGCGATAT+TGG 0.275042 tig0012839:+75175 None:intergenic
AAAGAAGGTGAGAATGAAAT+AGG 0.311106 tig0012839:+75527 None:intergenic
TCACACTCTTTGTTGTATCT+TGG 0.314011 tig0012839:+75147 None:intergenic
TCATACATCATCTTCTTGTC+TGG 0.316522 tig0012839:+75689 None:intergenic
TGGAATTTGTTGTTCTTGTT+TGG 0.319235 tig0012839:+76150 None:intergenic
GTTTGACAGAACGAATTAAT+AGG 0.332146 tig0012839:+75954 None:intergenic
TCTTGTTTGGTTTGATAGTA+AGG 0.335528 tig0012839:+76163 None:intergenic
AGCTTCCATTAACGATTGTT+TGG 0.336903 tig0012839:+75445 None:intergenic
CGTGCACGCATGAGCATGGC+TGG 0.338695 tig0012839:-74516 Msa1352800:CDS
CAAGAAGATGATGTATGAAT+TGG 0.343347 tig0012839:-75684 Msa1352800:CDS
GCATGAGCATGGCTGGGTTT+AGG 0.345416 tig0012839:-74509 Msa1352800:CDS
TTGCTGAACAATTCCGCAAC+TGG 0.346117 tig0012839:+75266 None:intergenic
GGTCGAGAAGCTGAGAGTTT+AGG 0.349907 tig0012839:-74960 Msa1352800:CDS
TGAAGGATTGAATTGTTCAT+AGG 0.353656 tig0012839:+75785 None:intergenic
TTCCGATGAGGTTTGATGTT+TGG 0.355277 tig0012839:+76089 None:intergenic
ATTGAATTGTTCATAGGTAA+TGG 0.359237 tig0012839:+75791 None:intergenic
TTGAATTGTTCATAGGTAAT+GGG 0.362850 tig0012839:+75792 None:intergenic
TGGAGTTTGCTTTGGTTGGA+TGG 0.363970 tig0012839:-74400 Msa1352800:CDS
TGTTGTTGTAGAGGATGTTT+TGG 0.373619 tig0012839:+76035 None:intergenic
AATGGTCACTAGTTGTTTCT+GGG 0.387462 tig0012839:-75625 Msa1352800:CDS
AATTGTAATTGCGAAGGTTA+AGG 0.395166 tig0012839:+76008 None:intergenic
GTTACTAACTCAGTAACTTT+CGG 0.401174 tig0012839:+74471 None:intergenic
TTGTCTGGGTCATAACTTGT+TGG 0.402653 tig0012839:+75704 None:intergenic
TCCGTTGACACGCTCTCATC+TGG 0.405421 tig0012839:+74819 None:intergenic
ATGGTGGAGTTTGCTTTGGT+TGG 0.406060 tig0012839:-74404 Msa1352800:CDS
GGAGTTTGCTTTGGTTGGAT+GGG 0.411286 tig0012839:-74399 Msa1352800:CDS
AAACTATGTTGGAAATTCCT+AGG 0.413663 tig0012839:+75932 None:intergenic
GTCGTGATCTTCAACATTGC+TGG 0.414937 tig0012839:+75035 None:intergenic
TATCTTGGAATGCGGCTTCA+AGG 0.418126 tig0012839:+75162 None:intergenic
GTTATTGTTGTTGTTCATGC+TGG 0.424896 tig0012839:+76231 None:intergenic
CAAAACTAAAATTCGATAGT+TGG 0.427464 tig0012839:-75349 Msa1352800:CDS
AACAATTCCGCAACTGGAGG+TGG 0.434762 tig0012839:+75272 None:intergenic
GCACAGTAATTCTGCTACCT+TGG 0.435103 tig0012839:+74436 None:intergenic
GGAGGATCCTCCGATTTCTA+TGG 0.444171 tig0012839:-76289 Msa1352800:CDS
TGTTTCTGACCATTCGTTGT+TGG 0.451392 tig0012839:+75592 None:intergenic
AAGCTGAGAGTTTAGGAATC+GGG 0.451634 tig0012839:-74953 Msa1352800:CDS
CAGTAACTTTCGGACTCATC+GGG 0.455708 tig0012839:+74481 None:intergenic
GAAGGGTTGATGAAAATTGA+TGG 0.456614 tig0012839:+76130 None:intergenic
CCTCCATCGCCAGTGAATCT+TGG 0.466056 tig0012839:+76307 None:intergenic
TGTTGATCCGCCATAGAAAT+CGG 0.467974 tig0012839:+76279 None:intergenic
GAGAATGGTGGAGTTTGCTT+TGG 0.469489 tig0012839:-74408 Msa1352800:CDS
GAACTCCATGTGAGTCTCAA+TGG 0.471041 tig0012839:-75062 Msa1352800:CDS
TCAACCACACGTGAAACTAA+TGG 0.479711 tig0012839:+74705 None:intergenic
CTTGTTTGGTTTGATAGTAA+GGG 0.487026 tig0012839:+76164 None:intergenic
CATACATCATCTTCTTGTCT+GGG 0.487648 tig0012839:+75690 None:intergenic
TCCAAAACTGTGACAATGCT+TGG 0.490294 tig0012839:+74753 None:intergenic
TCAGTAACTTTCGGACTCAT+CGG 0.492450 tig0012839:+74480 None:intergenic
TATGTCACCACTTACTCTGA+TGG 0.503965 tig0012839:-75906 Msa1352800:CDS
GGACTGTGTTGTTGTTATTG+AGG 0.504512 tig0012839:+75984 None:intergenic
GACAGAACGAATTAATAGGT+TGG 0.508599 tig0012839:+75958 None:intergenic
GTGAAATCCATCAGAGTAAG+TGG 0.511946 tig0012839:+75899 None:intergenic
GAAGCTGAGAGTTTAGGAAT+CGG 0.518502 tig0012839:-74954 Msa1352800:CDS
TAAGGTTGTTGTTGTTGTAG+AGG 0.521983 tig0012839:+76026 None:intergenic
TCGATGAGATTTAGGTTCAC+CGG 0.530238 tig0012839:+74918 None:intergenic
GTGACATAGGAAAACTATGT+TGG 0.533129 tig0012839:+75921 None:intergenic
CCAAGATTCACTGGCGATGG+AGG 0.533305 tig0012839:-76307 Msa1352800:CDS
CTTTGTTGTATCTTGGAATG+CGG 0.536014 tig0012839:+75154 None:intergenic
TTTGTATGAAATGGGAAGAA+GGG 0.537261 tig0012839:+76113 None:intergenic
TTGTTGTTGTTCATGCTGGA+TGG 0.539497 tig0012839:+76235 None:intergenic
AATCGGGTTTGAATTCAAAC+CGG 0.540939 tig0012839:-74937 Msa1352800:CDS
GCTGGTGAAACAATAGATGA+AGG 0.542748 tig0012839:+75479 None:intergenic
TGTTTGGAAAACTCAGAAGC+TGG 0.544411 tig0012839:+75461 None:intergenic
GCGAAGAGACATACCTAAGT+GGG 0.547835 tig0012839:+75835 None:intergenic
TGCAGTTGCTTGTGAAGGGA+GGG 0.563266 tig0012839:-74574 Msa1352800:CDS
GTTTGGTTTGATAGTAAGGG+TGG 0.564363 tig0012839:+76167 None:intergenic
ACCAGATGAGAGCGTGTCAA+CGG 0.566066 tig0012839:-74820 Msa1352800:CDS
AACGAATTAATAGGTTGGAA+AGG 0.567792 tig0012839:+75963 None:intergenic
ACATTGATGATGAAGAAGAA+TGG 0.574603 tig0012839:-75643 Msa1352800:CDS
ATGGCGTGCACGCATGAGCA+TGG 0.580440 tig0012839:-74520 Msa1352800:CDS
TGAGGTAATTGTAATTGCGA+AGG 0.585809 tig0012839:+76002 None:intergenic
AAGGGAGGGATCGTGTGGAA+AGG 0.587033 tig0012839:-74560 Msa1352800:CDS
AACCAAACATCAAACCTCAT+CGG 0.595925 tig0012839:-76091 Msa1352800:CDS
AGAATCTATTGAATTTACGA+TGG 0.596226 tig0012839:-74655 Msa1352800:CDS
GTGCACGCATGAGCATGGCT+GGG 0.597641 tig0012839:-74515 Msa1352800:CDS
AGAAATGCAGTTGCTTGTGA+AGG 0.600882 tig0012839:-74579 Msa1352800:CDS
ATGCAGTTGCTTGTGAAGGG+AGG 0.602267 tig0012839:-74575 Msa1352800:CDS
TAATTCGTTCTGTCAAACCT+AGG 0.604606 tig0012839:-75949 Msa1352800:CDS
CTGAACAATTCCGCAACTGG+AGG 0.608240 tig0012839:+75269 None:intergenic
ATCAGAGTAAGTGGTGACAT+AGG 0.609418 tig0012839:+75908 None:intergenic
GTGTATGTGCGAAACTAGAG+AGG 0.610106 tig0012839:+75378 None:intergenic
ATTACTGTGCATGAAGAGAA+TGG 0.610201 tig0012839:-74423 Msa1352800:CDS
TGAAAATCCACCTCCAGTTG+CGG 0.610781 tig0012839:-75279 Msa1352800:CDS
AGATGAATTTAGTGATGTGG+TGG 0.611511 tig0012839:+75502 None:intergenic
TTGGGATTGAAATTCATCGA+AGG 0.612552 tig0012839:+76060 None:intergenic
AAAGAGAAGTTGAGTTGACT+CGG 0.617772 tig0012839:+75235 None:intergenic
AGCGAAGAGACATACCTAAG+TGG 0.618035 tig0012839:+75834 None:intergenic
TTATGAACACCAACAACGAA+TGG 0.618414 tig0012839:-75601 Msa1352800:CDS
AACACCATTAGTTTCACGTG+TGG 0.622607 tig0012839:-74709 Msa1352800:CDS
GAAGGGCTTATGAATTCAAG+TGG 0.624238 tig0012839:+75869 None:intergenic
GCTACCACCTCAATTTCTGA+AGG 0.628584 tig0012839:-75425 Msa1352800:CDS
AGGAGATGAATTTAGTGATG+TGG 0.635063 tig0012839:+75499 None:intergenic
TGTGAAGAATCTCTATGTTG+TGG 0.635341 tig0012839:-75129 Msa1352800:CDS
GGATCCTCCGATTTCTATGG+CGG 0.638425 tig0012839:-76286 Msa1352800:CDS
GTCATTGAATTGTGACTCAG+AGG 0.645367 tig0012839:-74883 Msa1352800:CDS
AGGCAAAATGGATTATGCGA+AGG 0.646229 tig0012839:-75405 Msa1352800:CDS
GAAATGCAGTTGCTTGTGAA+GGG 0.657022 tig0012839:-74578 Msa1352800:CDS
TGACGAAGAAGTGTGTCACA+TGG 0.664504 tig0012839:+74792 None:intergenic
GTAACTTCAAGACTCATCCA+AGG 0.665089 tig0012839:-74453 Msa1352800:CDS
GTGAACCATTGAGACTCACA+TGG 0.665407 tig0012839:+75057 None:intergenic
TTGATTTCAGATTGTCATCG+TGG 0.675782 tig0012839:+74997 None:intergenic
TTTGCCTTCAGAAATTGAGG+TGG 0.677654 tig0012839:+75421 None:intergenic
CGAAGAGACATACCTAAGTG+GGG 0.696810 tig0012839:+75836 None:intergenic
GTTGAAGATCACGACTGTGA+CGG 0.707788 tig0012839:-75027 Msa1352800:CDS
TTGTGAAGGGAGGGATCGTG+TGG 0.715844 tig0012839:-74565 Msa1352800:CDS
TGATCCGCCATAGAAATCGG+AGG 0.729870 tig0012839:+76282 None:intergenic
ACTGTGCATGAAGAGAATGG+TGG 0.760237 tig0012839:-74420 Msa1352800:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGGAAAAATTCATATTTTGA+AGG + tig0012839:74916-74935 None:intergenic 20.0%
!!! AACTATCGAATTTTAGTTTT+GGG + tig0012839:75333-75352 None:intergenic 20.0%
!!! AGGAAAAATTCATATTTTGA+AGG + tig0012839:74916-74935 None:intergenic 20.0%
!!! AACTATCGAATTTTAGTTTT+GGG + tig0012839:75333-75352 None:intergenic 20.0%
!!! TGTTTGGTTTTGTATGAAAT+GGG + tig0012839:74579-74598 None:intergenic 25.0%
!!! ATGTTTGGTTTTGTATGAAA+TGG + tig0012839:74580-74599 None:intergenic 25.0%
! TTGAATTGTTCATAGGTAAT+GGG + tig0012839:74892-74911 None:intergenic 25.0%
! ATTGAATTGTTCATAGGTAA+TGG + tig0012839:74893-74912 None:intergenic 25.0%
!! AGCAAAATCAGAATTTTCAT+AGG + tig0012839:74936-74955 None:intergenic 25.0%
!!! AATGAAATAGGTTTTTGGAT+GGG + tig0012839:75145-75164 None:intergenic 25.0%
!!! CAACTATCGAATTTTAGTTT+TGG + tig0012839:75334-75353 None:intergenic 25.0%
! CAAAACTAAAATTCGATAGT+TGG - tig0012839:75332-75351 Msa1352800:CDS 25.0%
! AAAATTCGATAGTTGGTTAT+TGG - tig0012839:75339-75358 Msa1352800:CDS 25.0%
!!! TATGTTGTGGATTTTGATAT+TGG - tig0012839:75565-75584 Msa1352800:CDS 25.0%
!! AAATCAATCAGAGAACTTTT+GGG - tig0012839:75700-75719 Msa1352800:CDS 25.0%
! AGAATCTATTGAATTTACGA+TGG - tig0012839:76026-76045 Msa1352800:CDS 25.0%
!!! TGTTTGGTTTTGTATGAAAT+GGG + tig0012839:74579-74598 None:intergenic 25.0%
!!! ATGTTTGGTTTTGTATGAAA+TGG + tig0012839:74580-74599 None:intergenic 25.0%
! TTGAATTGTTCATAGGTAAT+GGG + tig0012839:74892-74911 None:intergenic 25.0%
! ATTGAATTGTTCATAGGTAA+TGG + tig0012839:74893-74912 None:intergenic 25.0%
!! AGCAAAATCAGAATTTTCAT+AGG + tig0012839:74936-74955 None:intergenic 25.0%
!!! AATGAAATAGGTTTTTGGAT+GGG + tig0012839:75145-75164 None:intergenic 25.0%
!!! CAACTATCGAATTTTAGTTT+TGG + tig0012839:75334-75353 None:intergenic 25.0%
! CAAAACTAAAATTCGATAGT+TGG - tig0012839:75332-75351 Msa1352800:CDS 25.0%
! AAAATTCGATAGTTGGTTAT+TGG - tig0012839:75339-75358 Msa1352800:CDS 25.0%
!!! TATGTTGTGGATTTTGATAT+TGG - tig0012839:75565-75584 Msa1352800:CDS 25.0%
!! AAATCAATCAGAGAACTTTT+GGG - tig0012839:75700-75719 Msa1352800:CDS 25.0%
! AGAATCTATTGAATTTACGA+TGG - tig0012839:76026-76045 Msa1352800:CDS 25.0%
!! CTTGTTTGGTTTGATAGTAA+GGG + tig0012839:74520-74539 None:intergenic 30.0%
!! TCTTGTTTGGTTTGATAGTA+AGG + tig0012839:74521-74540 None:intergenic 30.0%
!! TGGAATTTGTTGTTCTTGTT+TGG + tig0012839:74534-74553 None:intergenic 30.0%
TTTGTATGAAATGGGAAGAA+GGG + tig0012839:74571-74590 None:intergenic 30.0%
! TTTTGTATGAAATGGGAAGA+AGG + tig0012839:74572-74591 None:intergenic 30.0%
AATTGTAATTGCGAAGGTTA+AGG + tig0012839:74676-74695 None:intergenic 30.0%
! AACGAATTAATAGGTTGGAA+AGG + tig0012839:74721-74740 None:intergenic 30.0%
GTTTGACAGAACGAATTAAT+AGG + tig0012839:74730-74749 None:intergenic 30.0%
AAACTATGTTGGAAATTCCT+AGG + tig0012839:74752-74771 None:intergenic 30.0%
!!! GTAATGGGTTTTGAATATTC+GGG + tig0012839:74877-74896 None:intergenic 30.0%
!!! GGTAATGGGTTTTGAATATT+CGG + tig0012839:74878-74897 None:intergenic 30.0%
TGAAGGATTGAATTGTTCAT+AGG + tig0012839:74899-74918 None:intergenic 30.0%
CAAGAAGATGATGTATGAAT+TGG - tig0012839:74997-75016 Msa1352800:CDS 30.0%
!! ACATTGATGATGAAGAAGAA+TGG - tig0012839:75038-75057 Msa1352800:CDS 30.0%
!! ATGAAATAGGTTTTTGGATG+GGG + tig0012839:75144-75163 None:intergenic 30.0%
!! GAATGAAATAGGTTTTTGGA+TGG + tig0012839:75146-75165 None:intergenic 30.0%
! GTGAGAATGAAATAGGTTTT+TGG + tig0012839:75150-75169 None:intergenic 30.0%
AAAGAAGGTGAGAATGAAAT+AGG + tig0012839:75157-75176 None:intergenic 30.0%
! GTTTTCCAAACAATCGTTAA+TGG - tig0012839:75231-75250 Msa1352800:CDS 30.0%
!! GTGGATTTTGATATTGGTAA+TGG - tig0012839:75571-75590 Msa1352800:CDS 30.0%
! GAAATCAATCAGAGAACTTT+TGG - tig0012839:75699-75718 Msa1352800:CDS 30.0%
GAGAGATTAAAGCTTGAAAA+AGG - tig0012839:76063-76082 Msa1352800:CDS 30.0%
GTTACTAACTCAGTAACTTT+CGG + tig0012839:76213-76232 None:intergenic 30.0%
!! CTTGTTTGGTTTGATAGTAA+GGG + tig0012839:74520-74539 None:intergenic 30.0%
!! TCTTGTTTGGTTTGATAGTA+AGG + tig0012839:74521-74540 None:intergenic 30.0%
!! TGGAATTTGTTGTTCTTGTT+TGG + tig0012839:74534-74553 None:intergenic 30.0%
TTTGTATGAAATGGGAAGAA+GGG + tig0012839:74571-74590 None:intergenic 30.0%
! TTTTGTATGAAATGGGAAGA+AGG + tig0012839:74572-74591 None:intergenic 30.0%
AATTGTAATTGCGAAGGTTA+AGG + tig0012839:74676-74695 None:intergenic 30.0%
! AACGAATTAATAGGTTGGAA+AGG + tig0012839:74721-74740 None:intergenic 30.0%
GTTTGACAGAACGAATTAAT+AGG + tig0012839:74730-74749 None:intergenic 30.0%
AAACTATGTTGGAAATTCCT+AGG + tig0012839:74752-74771 None:intergenic 30.0%
!!! GTAATGGGTTTTGAATATTC+GGG + tig0012839:74877-74896 None:intergenic 30.0%
!!! GGTAATGGGTTTTGAATATT+CGG + tig0012839:74878-74897 None:intergenic 30.0%
TGAAGGATTGAATTGTTCAT+AGG + tig0012839:74899-74918 None:intergenic 30.0%
CAAGAAGATGATGTATGAAT+TGG - tig0012839:74997-75016 Msa1352800:CDS 30.0%
!! ACATTGATGATGAAGAAGAA+TGG - tig0012839:75038-75057 Msa1352800:CDS 30.0%
!! ATGAAATAGGTTTTTGGATG+GGG + tig0012839:75144-75163 None:intergenic 30.0%
!! GAATGAAATAGGTTTTTGGA+TGG + tig0012839:75146-75165 None:intergenic 30.0%
! GTGAGAATGAAATAGGTTTT+TGG + tig0012839:75150-75169 None:intergenic 30.0%
AAAGAAGGTGAGAATGAAAT+AGG + tig0012839:75157-75176 None:intergenic 30.0%
! GTTTTCCAAACAATCGTTAA+TGG - tig0012839:75231-75250 Msa1352800:CDS 30.0%
!! GTGGATTTTGATATTGGTAA+TGG - tig0012839:75571-75590 Msa1352800:CDS 30.0%
! GAAATCAATCAGAGAACTTT+TGG - tig0012839:75699-75718 Msa1352800:CDS 30.0%
GAGAGATTAAAGCTTGAAAA+AGG - tig0012839:76063-76082 Msa1352800:CDS 30.0%
GTTACTAACTCAGTAACTTT+CGG + tig0012839:76213-76232 None:intergenic 30.0%
! ATGTTTTCACCAAGATTCAC+TGG - tig0012839:74365-74384 Msa1352800:CDS 35.0%
! GTTATTGTTGTTGTTCATGC+TGG + tig0012839:74453-74472 None:intergenic 35.0%
GCGATATGGTTGAGAAATTA+TGG + tig0012839:74484-74503 None:intergenic 35.0%
!! GAAGGGTTGATGAAAATTGA+TGG + tig0012839:74554-74573 None:intergenic 35.0%
AACCAAACATCAAACCTCAT+CGG - tig0012839:74590-74609 Msa1352800:CDS 35.0%
TTGGGATTGAAATTCATCGA+AGG + tig0012839:74624-74643 None:intergenic 35.0%
!!! GTAGAGGATGTTTTGGTTTT+GGG + tig0012839:74642-74661 None:intergenic 35.0%
!!! TGTAGAGGATGTTTTGGTTT+TGG + tig0012839:74643-74662 None:intergenic 35.0%
! TGTTGTTGTAGAGGATGTTT+TGG + tig0012839:74649-74668 None:intergenic 35.0%
! TAAGGTTGTTGTTGTTGTAG+AGG + tig0012839:74658-74677 None:intergenic 35.0%
TGAGGTAATTGTAATTGCGA+AGG + tig0012839:74682-74701 None:intergenic 35.0%
GACAGAACGAATTAATAGGT+TGG + tig0012839:74726-74745 None:intergenic 35.0%
TAATTCGTTCTGTCAAACCT+AGG - tig0012839:74732-74751 Msa1352800:CDS 35.0%
GTGACATAGGAAAACTATGT+TGG + tig0012839:74763-74782 None:intergenic 35.0%
CATACATCATCTTCTTGTCT+GGG + tig0012839:74994-75013 None:intergenic 35.0%
TCATACATCATCTTCTTGTC+TGG + tig0012839:74995-75014 None:intergenic 35.0%
!! AATGGTCACTAGTTGTTTCT+GGG - tig0012839:75056-75075 Msa1352800:CDS 35.0%
TTATGAACACCAACAACGAA+TGG - tig0012839:75080-75099 Msa1352800:CDS 35.0%
AGATGAATTTAGTGATGTGG+TGG + tig0012839:75182-75201 None:intergenic 35.0%
AGGAGATGAATTTAGTGATG+TGG + tig0012839:75185-75204 None:intergenic 35.0%
AGCTTCCATTAACGATTGTT+TGG + tig0012839:75239-75258 None:intergenic 35.0%
! CATTTTGCCTTCAGAAATTG+AGG + tig0012839:75266-75285 None:intergenic 35.0%
! CTCAATTTCTGAAGGCAAAA+TGG - tig0012839:75264-75283 Msa1352800:CDS 35.0%
!! AAAGAGAAGTTGAGTTGACT+CGG + tig0012839:75449-75468 None:intergenic 35.0%
! CTTTGTTGTATCTTGGAATG+CGG + tig0012839:75530-75549 None:intergenic 35.0%
! TCACACTCTTTGTTGTATCT+TGG + tig0012839:75537-75556 None:intergenic 35.0%
TGTGAAGAATCTCTATGTTG+TGG - tig0012839:75552-75571 Msa1352800:CDS 35.0%
TTGATTTCAGATTGTCATCG+TGG + tig0012839:75687-75706 None:intergenic 35.0%
AATCGGGTTTGAATTCAAAC+CGG - tig0012839:75744-75763 Msa1352800:CDS 35.0%
GAGTTAGTTCGATGAGATTT+AGG + tig0012839:75774-75793 None:intergenic 35.0%
!! GGTGTGAAGTTTTTGAGAAA+TGG - tig0012839:76142-76161 Msa1352800:CDS 35.0%
ATTACTGTGCATGAAGAGAA+TGG - tig0012839:76258-76277 Msa1352800:CDS 35.0%
! ATGTTTTCACCAAGATTCAC+TGG - tig0012839:74365-74384 Msa1352800:CDS 35.0%
! GTTATTGTTGTTGTTCATGC+TGG + tig0012839:74453-74472 None:intergenic 35.0%
GCGATATGGTTGAGAAATTA+TGG + tig0012839:74484-74503 None:intergenic 35.0%
!! GAAGGGTTGATGAAAATTGA+TGG + tig0012839:74554-74573 None:intergenic 35.0%
AACCAAACATCAAACCTCAT+CGG - tig0012839:74590-74609 Msa1352800:CDS 35.0%
TTGGGATTGAAATTCATCGA+AGG + tig0012839:74624-74643 None:intergenic 35.0%
!!! GTAGAGGATGTTTTGGTTTT+GGG + tig0012839:74642-74661 None:intergenic 35.0%
!!! TGTAGAGGATGTTTTGGTTT+TGG + tig0012839:74643-74662 None:intergenic 35.0%
! TGTTGTTGTAGAGGATGTTT+TGG + tig0012839:74649-74668 None:intergenic 35.0%
! TAAGGTTGTTGTTGTTGTAG+AGG + tig0012839:74658-74677 None:intergenic 35.0%
TGAGGTAATTGTAATTGCGA+AGG + tig0012839:74682-74701 None:intergenic 35.0%
GACAGAACGAATTAATAGGT+TGG + tig0012839:74726-74745 None:intergenic 35.0%
TAATTCGTTCTGTCAAACCT+AGG - tig0012839:74732-74751 Msa1352800:CDS 35.0%
GTGACATAGGAAAACTATGT+TGG + tig0012839:74763-74782 None:intergenic 35.0%
CATACATCATCTTCTTGTCT+GGG + tig0012839:74994-75013 None:intergenic 35.0%
TCATACATCATCTTCTTGTC+TGG + tig0012839:74995-75014 None:intergenic 35.0%
!! AATGGTCACTAGTTGTTTCT+GGG - tig0012839:75056-75075 Msa1352800:CDS 35.0%
TTATGAACACCAACAACGAA+TGG - tig0012839:75080-75099 Msa1352800:CDS 35.0%
AGATGAATTTAGTGATGTGG+TGG + tig0012839:75182-75201 None:intergenic 35.0%
AGGAGATGAATTTAGTGATG+TGG + tig0012839:75185-75204 None:intergenic 35.0%
AGCTTCCATTAACGATTGTT+TGG + tig0012839:75239-75258 None:intergenic 35.0%
! CATTTTGCCTTCAGAAATTG+AGG + tig0012839:75266-75285 None:intergenic 35.0%
! CTCAATTTCTGAAGGCAAAA+TGG - tig0012839:75264-75283 Msa1352800:CDS 35.0%
!! AAAGAGAAGTTGAGTTGACT+CGG + tig0012839:75449-75468 None:intergenic 35.0%
! CTTTGTTGTATCTTGGAATG+CGG + tig0012839:75530-75549 None:intergenic 35.0%
! TCACACTCTTTGTTGTATCT+TGG + tig0012839:75537-75556 None:intergenic 35.0%
TGTGAAGAATCTCTATGTTG+TGG - tig0012839:75552-75571 Msa1352800:CDS 35.0%
TTGATTTCAGATTGTCATCG+TGG + tig0012839:75687-75706 None:intergenic 35.0%
AATCGGGTTTGAATTCAAAC+CGG - tig0012839:75744-75763 Msa1352800:CDS 35.0%
GAGTTAGTTCGATGAGATTT+AGG + tig0012839:75774-75793 None:intergenic 35.0%
!! GGTGTGAAGTTTTTGAGAAA+TGG - tig0012839:76142-76161 Msa1352800:CDS 35.0%
ATTACTGTGCATGAAGAGAA+TGG - tig0012839:76258-76277 Msa1352800:CDS 35.0%
TGTTGATCCGCCATAGAAAT+CGG + tig0012839:74405-74424 None:intergenic 40.0%
! TTGTTGTTGTTCATGCTGGA+TGG + tig0012839:74449-74468 None:intergenic 40.0%
! GTGGTGAAGATTTTGCGATA+TGG + tig0012839:74498-74517 None:intergenic 40.0%
!! GTTTGGTTTGATAGTAAGGG+TGG + tig0012839:74517-74536 None:intergenic 40.0%
TTCCGATGAGGTTTGATGTT+TGG + tig0012839:74595-74614 None:intergenic 40.0%
! GGACTGTGTTGTTGTTATTG+AGG + tig0012839:74700-74719 None:intergenic 40.0%
ATCAGAGTAAGTGGTGACAT+AGG + tig0012839:74776-74795 None:intergenic 40.0%
TATGTCACCACTTACTCTGA+TGG - tig0012839:74775-74794 Msa1352800:CDS 40.0%
GTGAAATCCATCAGAGTAAG+TGG + tig0012839:74785-74804 None:intergenic 40.0%
GAAGGGCTTATGAATTCAAG+TGG + tig0012839:74815-74834 None:intergenic 40.0%
AGTGGGGTGAAGAAAAAGAA+GGG + tig0012839:74832-74851 None:intergenic 40.0%
AAGTGGGGTGAAGAAAAAGA+AGG + tig0012839:74833-74852 None:intergenic 40.0%
! TCTTTTTCTTCACCCCACTT+AGG - tig0012839:74833-74852 Msa1352800:CDS 40.0%
! TTGTCTGGGTCATAACTTGT+TGG + tig0012839:74980-74999 None:intergenic 40.0%
! GAATGGTCACTAGTTGTTTC+TGG - tig0012839:75055-75074 Msa1352800:CDS 40.0%
! TGTTTCTGACCATTCGTTGT+TGG + tig0012839:75092-75111 None:intergenic 40.0%
! AGTGATGTGGTGGAAAAAGA+AGG + tig0012839:75172-75191 None:intergenic 40.0%
GCTGGTGAAACAATAGATGA+AGG + tig0012839:75205-75224 None:intergenic 40.0%
TGTTTGGAAAACTCAGAAGC+TGG + tig0012839:75223-75242 None:intergenic 40.0%
TTTGCCTTCAGAAATTGAGG+TGG + tig0012839:75263-75282 None:intergenic 40.0%
!! AGGCAAAATGGATTATGCGA+AGG - tig0012839:75276-75295 Msa1352800:CDS 40.0%
TTGCTTCAAGCTCTCTTTCA+TGG - tig0012839:75480-75499 Msa1352800:CDS 40.0%
GAAGCTGAGAGTTTAGGAAT+CGG - tig0012839:75727-75746 Msa1352800:CDS 40.0%
AAGCTGAGAGTTTAGGAATC+GGG - tig0012839:75728-75747 Msa1352800:CDS 40.0%
! TCGATGAGATTTAGGTTCAC+CGG + tig0012839:75766-75785 None:intergenic 40.0%
GTCATTGAATTGTGACTCAG+AGG - tig0012839:75798-75817 Msa1352800:CDS 40.0%
!! TCCAAGCATTGTCACAGTTT+TGG - tig0012839:75927-75946 Msa1352800:CDS 40.0%
TCCAAAACTGTGACAATGCT+TGG + tig0012839:75931-75950 None:intergenic 40.0%
! AACACCATTAGTTTCACGTG+TGG - tig0012839:75972-75991 Msa1352800:CDS 40.0%
TCAACCACACGTGAAACTAA+TGG + tig0012839:75979-75998 None:intergenic 40.0%
AGAAATGCAGTTGCTTGTGA+AGG - tig0012839:76102-76121 Msa1352800:CDS 40.0%
GAAATGCAGTTGCTTGTGAA+GGG - tig0012839:76103-76122 Msa1352800:CDS 40.0%
TCAGTAACTTTCGGACTCAT+CGG + tig0012839:76204-76223 None:intergenic 40.0%
GTAACTTCAAGACTCATCCA+AGG - tig0012839:76228-76247 Msa1352800:CDS 40.0%
CTCTCAATGTTGCATCTTCT+TGG - tig0012839:76310-76329 Msa1352800:CDS 40.0%
TGTTGATCCGCCATAGAAAT+CGG + tig0012839:74405-74424 None:intergenic 40.0%
! TTGTTGTTGTTCATGCTGGA+TGG + tig0012839:74449-74468 None:intergenic 40.0%
! GTGGTGAAGATTTTGCGATA+TGG + tig0012839:74498-74517 None:intergenic 40.0%
!! GTTTGGTTTGATAGTAAGGG+TGG + tig0012839:74517-74536 None:intergenic 40.0%
TTCCGATGAGGTTTGATGTT+TGG + tig0012839:74595-74614 None:intergenic 40.0%
! GGACTGTGTTGTTGTTATTG+AGG + tig0012839:74700-74719 None:intergenic 40.0%
ATCAGAGTAAGTGGTGACAT+AGG + tig0012839:74776-74795 None:intergenic 40.0%
TATGTCACCACTTACTCTGA+TGG - tig0012839:74775-74794 Msa1352800:CDS 40.0%
GTGAAATCCATCAGAGTAAG+TGG + tig0012839:74785-74804 None:intergenic 40.0%
GAAGGGCTTATGAATTCAAG+TGG + tig0012839:74815-74834 None:intergenic 40.0%
AGTGGGGTGAAGAAAAAGAA+GGG + tig0012839:74832-74851 None:intergenic 40.0%
AAGTGGGGTGAAGAAAAAGA+AGG + tig0012839:74833-74852 None:intergenic 40.0%
! TCTTTTTCTTCACCCCACTT+AGG - tig0012839:74833-74852 Msa1352800:CDS 40.0%
! TTGTCTGGGTCATAACTTGT+TGG + tig0012839:74980-74999 None:intergenic 40.0%
! GAATGGTCACTAGTTGTTTC+TGG - tig0012839:75055-75074 Msa1352800:CDS 40.0%
! TGTTTCTGACCATTCGTTGT+TGG + tig0012839:75092-75111 None:intergenic 40.0%
! AGTGATGTGGTGGAAAAAGA+AGG + tig0012839:75172-75191 None:intergenic 40.0%
GCTGGTGAAACAATAGATGA+AGG + tig0012839:75205-75224 None:intergenic 40.0%
TGTTTGGAAAACTCAGAAGC+TGG + tig0012839:75223-75242 None:intergenic 40.0%
TTTGCCTTCAGAAATTGAGG+TGG + tig0012839:75263-75282 None:intergenic 40.0%
!! AGGCAAAATGGATTATGCGA+AGG - tig0012839:75276-75295 Msa1352800:CDS 40.0%
TTGCTTCAAGCTCTCTTTCA+TGG - tig0012839:75480-75499 Msa1352800:CDS 40.0%
GAAGCTGAGAGTTTAGGAAT+CGG - tig0012839:75727-75746 Msa1352800:CDS 40.0%
AAGCTGAGAGTTTAGGAATC+GGG - tig0012839:75728-75747 Msa1352800:CDS 40.0%
! TCGATGAGATTTAGGTTCAC+CGG + tig0012839:75766-75785 None:intergenic 40.0%
GTCATTGAATTGTGACTCAG+AGG - tig0012839:75798-75817 Msa1352800:CDS 40.0%
!! TCCAAGCATTGTCACAGTTT+TGG - tig0012839:75927-75946 Msa1352800:CDS 40.0%
TCCAAAACTGTGACAATGCT+TGG + tig0012839:75931-75950 None:intergenic 40.0%
! AACACCATTAGTTTCACGTG+TGG - tig0012839:75972-75991 Msa1352800:CDS 40.0%
TCAACCACACGTGAAACTAA+TGG + tig0012839:75979-75998 None:intergenic 40.0%
AGAAATGCAGTTGCTTGTGA+AGG - tig0012839:76102-76121 Msa1352800:CDS 40.0%
GAAATGCAGTTGCTTGTGAA+GGG - tig0012839:76103-76122 Msa1352800:CDS 40.0%
TCAGTAACTTTCGGACTCAT+CGG + tig0012839:76204-76223 None:intergenic 40.0%
GTAACTTCAAGACTCATCCA+AGG - tig0012839:76228-76247 Msa1352800:CDS 40.0%
CTCTCAATGTTGCATCTTCT+TGG - tig0012839:76310-76329 Msa1352800:CDS 40.0%
CGAAGAGACATACCTAAGTG+GGG + tig0012839:74848-74867 None:intergenic 45.0%
GCGAAGAGACATACCTAAGT+GGG + tig0012839:74849-74868 None:intergenic 45.0%
AGCGAAGAGACATACCTAAG+TGG + tig0012839:74850-74869 None:intergenic 45.0%
GCTACCACCTCAATTTCTGA+AGG - tig0012839:75256-75275 Msa1352800:CDS 45.0%
GTGTATGTGCGAAACTAGAG+AGG + tig0012839:75306-75325 None:intergenic 45.0%
TGAAAATCCACCTCCAGTTG+CGG - tig0012839:75402-75421 Msa1352800:CDS 45.0%
TTGCTGAACAATTCCGCAAC+TGG + tig0012839:75418-75437 None:intergenic 45.0%
GGCTTCAAGGATTGCGATAT+TGG + tig0012839:75509-75528 None:intergenic 45.0%
TATCTTGGAATGCGGCTTCA+AGG + tig0012839:75522-75541 None:intergenic 45.0%
TGAGACTCACATGGAGTTCT+TGG + tig0012839:75618-75637 None:intergenic 45.0%
GAACTCCATGTGAGTCTCAA+TGG - tig0012839:75619-75638 Msa1352800:CDS 45.0%
GTGAACCATTGAGACTCACA+TGG + tig0012839:75627-75646 None:intergenic 45.0%
GTCGTGATCTTCAACATTGC+TGG + tig0012839:75649-75668 None:intergenic 45.0%
GTTGAAGATCACGACTGTGA+CGG - tig0012839:75654-75673 Msa1352800:CDS 45.0%
! TGACGAAGAAGTGTGTCACA+TGG + tig0012839:75892-75911 None:intergenic 45.0%
CAGTAACTTTCGGACTCATC+GGG + tig0012839:76203-76222 None:intergenic 45.0%
GCACAGTAATTCTGCTACCT+TGG + tig0012839:76248-76267 None:intergenic 45.0%
ACTGTGCATGAAGAGAATGG+TGG - tig0012839:76261-76280 Msa1352800:CDS 45.0%
! GAGAATGGTGGAGTTTGCTT+TGG - tig0012839:76273-76292 Msa1352800:CDS 45.0%
! ATGGTGGAGTTTGCTTTGGT+TGG - tig0012839:76277-76296 Msa1352800:CDS 45.0%
! TGGAGTTTGCTTTGGTTGGA+TGG - tig0012839:76281-76300 Msa1352800:CDS 45.0%
! GGAGTTTGCTTTGGTTGGAT+GGG - tig0012839:76282-76301 Msa1352800:CDS 45.0%
CGAAGAGACATACCTAAGTG+GGG + tig0012839:74848-74867 None:intergenic 45.0%
GCGAAGAGACATACCTAAGT+GGG + tig0012839:74849-74868 None:intergenic 45.0%
AGCGAAGAGACATACCTAAG+TGG + tig0012839:74850-74869 None:intergenic 45.0%
GCTACCACCTCAATTTCTGA+AGG - tig0012839:75256-75275 Msa1352800:CDS 45.0%
GTGTATGTGCGAAACTAGAG+AGG + tig0012839:75306-75325 None:intergenic 45.0%
TGAAAATCCACCTCCAGTTG+CGG - tig0012839:75402-75421 Msa1352800:CDS 45.0%
TTGCTGAACAATTCCGCAAC+TGG + tig0012839:75418-75437 None:intergenic 45.0%
GGCTTCAAGGATTGCGATAT+TGG + tig0012839:75509-75528 None:intergenic 45.0%
TATCTTGGAATGCGGCTTCA+AGG + tig0012839:75522-75541 None:intergenic 45.0%
TGAGACTCACATGGAGTTCT+TGG + tig0012839:75618-75637 None:intergenic 45.0%
GAACTCCATGTGAGTCTCAA+TGG - tig0012839:75619-75638 Msa1352800:CDS 45.0%
GTGAACCATTGAGACTCACA+TGG + tig0012839:75627-75646 None:intergenic 45.0%
GTCGTGATCTTCAACATTGC+TGG + tig0012839:75649-75668 None:intergenic 45.0%
GTTGAAGATCACGACTGTGA+CGG - tig0012839:75654-75673 Msa1352800:CDS 45.0%
! TGACGAAGAAGTGTGTCACA+TGG + tig0012839:75892-75911 None:intergenic 45.0%
CAGTAACTTTCGGACTCATC+GGG + tig0012839:76203-76222 None:intergenic 45.0%
GCACAGTAATTCTGCTACCT+TGG + tig0012839:76248-76267 None:intergenic 45.0%
ACTGTGCATGAAGAGAATGG+TGG - tig0012839:76261-76280 Msa1352800:CDS 45.0%
! GAGAATGGTGGAGTTTGCTT+TGG - tig0012839:76273-76292 Msa1352800:CDS 45.0%
! ATGGTGGAGTTTGCTTTGGT+TGG - tig0012839:76277-76296 Msa1352800:CDS 45.0%
! TGGAGTTTGCTTTGGTTGGA+TGG - tig0012839:76281-76300 Msa1352800:CDS 45.0%
! GGAGTTTGCTTTGGTTGGAT+GGG - tig0012839:76282-76301 Msa1352800:CDS 45.0%
TCACCAAGATTCACTGGCGA+TGG - tig0012839:74371-74390 Msa1352800:CDS 50.0%
GGAGGATCCTCCGATTTCTA+TGG - tig0012839:74392-74411 Msa1352800:CDS 50.0%
GGATCCTCCGATTTCTATGG+CGG - tig0012839:74395-74414 Msa1352800:CDS 50.0%
TGATCCGCCATAGAAATCGG+AGG + tig0012839:74402-74421 None:intergenic 50.0%
!! CGAAGGTACGTTTTCCGATG+AGG + tig0012839:74607-74626 None:intergenic 50.0%
AACAATTCCGCAACTGGAGG+TGG + tig0012839:75412-75431 None:intergenic 50.0%
CTGAACAATTCCGCAACTGG+AGG + tig0012839:75415-75434 None:intergenic 50.0%
GGTCGAGAAGCTGAGAGTTT+AGG - tig0012839:75721-75740 Msa1352800:CDS 50.0%
! ACCAGATGAGAGCGTGTCAA+CGG - tig0012839:75861-75880 Msa1352800:CDS 50.0%
ATGCAGTTGCTTGTGAAGGG+AGG - tig0012839:76106-76125 Msa1352800:CDS 50.0%
TGCAGTTGCTTGTGAAGGGA+GGG - tig0012839:76107-76126 Msa1352800:CDS 50.0%
TCACCAAGATTCACTGGCGA+TGG - tig0012839:74371-74390 Msa1352800:CDS 50.0%
GGAGGATCCTCCGATTTCTA+TGG - tig0012839:74392-74411 Msa1352800:CDS 50.0%
GGATCCTCCGATTTCTATGG+CGG - tig0012839:74395-74414 Msa1352800:CDS 50.0%
TGATCCGCCATAGAAATCGG+AGG + tig0012839:74402-74421 None:intergenic 50.0%
!! CGAAGGTACGTTTTCCGATG+AGG + tig0012839:74607-74626 None:intergenic 50.0%
AACAATTCCGCAACTGGAGG+TGG + tig0012839:75412-75431 None:intergenic 50.0%
CTGAACAATTCCGCAACTGG+AGG + tig0012839:75415-75434 None:intergenic 50.0%
GGTCGAGAAGCTGAGAGTTT+AGG - tig0012839:75721-75740 Msa1352800:CDS 50.0%
! ACCAGATGAGAGCGTGTCAA+CGG - tig0012839:75861-75880 Msa1352800:CDS 50.0%
ATGCAGTTGCTTGTGAAGGG+AGG - tig0012839:76106-76125 Msa1352800:CDS 50.0%
TGCAGTTGCTTGTGAAGGGA+GGG - tig0012839:76107-76126 Msa1352800:CDS 50.0%
CCTCCATCGCCAGTGAATCT+TGG + tig0012839:74377-74396 None:intergenic 55.0%
CCAAGATTCACTGGCGATGG+AGG - tig0012839:74374-74393 Msa1352800:CDS 55.0%
TCCGTTGACACGCTCTCATC+TGG + tig0012839:75865-75884 None:intergenic 55.0%
TTGTGAAGGGAGGGATCGTG+TGG - tig0012839:76116-76135 Msa1352800:CDS 55.0%
AAGGGAGGGATCGTGTGGAA+AGG - tig0012839:76121-76140 Msa1352800:CDS 55.0%
GCATGAGCATGGCTGGGTTT+AGG - tig0012839:76172-76191 Msa1352800:CDS 55.0%
CCTCCATCGCCAGTGAATCT+TGG + tig0012839:74377-74396 None:intergenic 55.0%
CCAAGATTCACTGGCGATGG+AGG - tig0012839:74374-74393 Msa1352800:CDS 55.0%
TCCGTTGACACGCTCTCATC+TGG + tig0012839:75865-75884 None:intergenic 55.0%
TTGTGAAGGGAGGGATCGTG+TGG - tig0012839:76116-76135 Msa1352800:CDS 55.0%
AAGGGAGGGATCGTGTGGAA+AGG - tig0012839:76121-76140 Msa1352800:CDS 55.0%
GCATGAGCATGGCTGGGTTT+AGG - tig0012839:76172-76191 Msa1352800:CDS 55.0%
ATGGCGTGCACGCATGAGCA+TGG - tig0012839:76161-76180 Msa1352800:CDS 60.0%
GTGCACGCATGAGCATGGCT+GGG - tig0012839:76166-76185 Msa1352800:CDS 60.0%
ATGGCGTGCACGCATGAGCA+TGG - tig0012839:76161-76180 Msa1352800:CDS 60.0%
GTGCACGCATGAGCATGGCT+GGG - tig0012839:76166-76185 Msa1352800:CDS 60.0%
CGTGCACGCATGAGCATGGC+TGG - tig0012839:76165-76184 Msa1352800:CDS 65.0%
CGTGCACGCATGAGCATGGC+TGG - tig0012839:76165-76184 Msa1352800:CDS 65.0%
Chromosome Type Strat End Strand Name
tig0012839 gene 74365 76338 74365 ID=Msa1352800;Name=Msa1352800
tig0012839 mRNA 74365 76338 74365 ID=Msa1352800-mRNA-1;Parent=Msa1352800;Name=Msa1352800-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|657
tig0012839 exon 74365 76338 74365 ID=Msa1352800-mRNA-1:exon:8319;Parent=Msa1352800-mRNA-1
tig0012839 CDS 74365 76338 74365 ID=Msa1352800-mRNA-1:cds;Parent=Msa1352800-mRNA-1
Gene Sequence

>Msa1352800

ATGTTTTCACCAAGATTCACTGGCGATGGAGGATCCTCCGATTTCTATGGCGGATCAACAAGTAATAGATCTATCAAACTTCCATCCAGCATGAACAACAACAATAACATCTACAACCATAATTTCTCAACCATATCGCAAAATCTTCACCACCCTTACTATCAAACCAAACAAGAACAACAAATTCCATCAATTTTCATCAACCCTTCTTCCCATTTCATACAAAACCAAACATCAAACCTCATCGGAAAACGTACCTTCGATGAATTTCAATCCCAAAACCAAAACATCCTCTACAACAACAACAACCTTAACCTTCGCAATTACAATTACCTCAATAACAACAACACAGTCCTTTCCAACCTATTAATTCGTTCTGTCAAACCTAGGAATTTCCAACATAGTTTTCCTATGTCACCACTTACTCTGATGGATTTCACAAGTTCACCACTTGAATTCATAAGCCCTTCTTTTTCTTCACCCCACTTAGGTATGTCTCTTCGCTCAAACCCGAATATTCAAAACCCATTACCTATGAACAATTCAATCCTTCAAAATATGAATTTTTCCTATGAAAATTCTGATTTTGCTGAGATTCAAAGCACGATAGTTCCAACAAGTTATGACCCAGACAAGAAGATGATGTATGAATTGGAAAAAAAGCTTCATGAAGACATTGATGATGAAGAAGAATGGTCACTAGTTGTTTCTGGGATTATGAACACCAACAACGAATGGTCAGAAACAATTCGTAATTTGAATAGTTTCGAGCAAAACCCCATCCAAAAACCTATTTCATTCTCACCTTCTTTTTCCACCACATCACTAAATTCATCTCCTTCATCTATTGTTTCACCAGCTTCTGAGTTTTCCAAACAATCGTTAATGGAAGCTACCACCTCAATTTCTGAAGGCAAAATGGATTATGCGAAGGAGATCCTCTCTAGTTTCGCACATACACAAAACCCAAAACTAAAATTCGATAGTTGGTTATTGGATTGCATTGCTTCAGCGCTGAAATCGCGTCTGTATAACATTGAAAATCCACCTCCAGTTGCGGAATTGTTCAGCAAAGAACATGCCGAGTCAACTCAACTTCTCTTTGATCACTCTCTTTGCTTCAAGCTCTCTTTCATGGCTGCCAATATCGCAATCCTTGAAGCCGCATTCCAAGATACAACAAAGAGTGTGAAGAATCTCTATGTTGTGGATTTTGATATTGGTAATGGAAAACAATACATCAATCTGCTCCAAGAACTCCATGTGAGTCTCAATGGTTCACCAGCAATGTTGAAGATCACGACTGTGACGGTGAACATCCACGATGACAATCTGAAATCAATCAGAGAACTTTTGGGTCGAGAAGCTGAGAGTTTAGGAATCGGGTTTGAATTCAAACCGGTGAACCTAAATCTCATCGAACTAACTCGCGAGTCATTGAATTGTGACTCAGAGGATATTCTTGCTGTGAATTTCACGTTTAATCTATACAAAATACCAGATGAGAGCGTGTCAACGGAGAATCCATGTGACACACTTCTTCGTCAAGTGAAATCACTCTCTCCAAGCATTGTCACAGTTTTGGAGCAAGAGATGAATACAAACACAACACCATTAGTTTCACGTGTGGTTGAAACTTGTTCTTATTACAGCACATTGCTAGAATCTATTGAATTTACGATGGATCATGATAGTTATGAGAGATTAAAGCTTGAAAAAGGACTGAGCATGAAGATGAGAAATGCAGTTGCTTGTGAAGGGAGGGATCGTGTGGAAAGGTGTGAAGTTTTTGAGAAATGGCGTGCACGCATGAGCATGGCTGGGTTTAGGTTAAACCCGATGAGTCCGAAAGTTACTGAGTTAGTAACTTCAAGACTCATCCAAGGTAGCAGAATTACTGTGCATGAAGAGAATGGTGGAGTTTGCTTTGGTTGGATGGGAAAAACTCTCAATGTTGCATCTTCTTGGTGTTAA
Protein sequence

>Msa1352800

MFSPRFTGDGGSSDFYGGSTSNRSIKLPSSMNNNNNIYNHNFSTISQNLHHPYYQTKQEQQIPSIFINPSSHFIQNQTSNLIGKRTFDEFQSQNQNILYNNNNLNLRNYNYLNNNNTVLSNLLIRSVKPRNFQHSFPMSPLTLMDFTSSPLEFISPSFSSPHLGMSLRSNPNIQNPLPMNNSILQNMNFSYENSDFAEIQSTIVPTSYDPDKKMMYELEKKLHEDIDDEEEWSLVVSGIMNTNNEWSETIRNLNSFEQNPIQKPISFSPSFSTTSLNSSPSSIVSPASEFSKQSLMEATTSISEGKMDYAKEILSSFAHTQNPKLKFDSWLLDCIASALKSRLYNIENPPPVAELFSKEHAESTQLLFDHSLCFKLSFMAANIAILEAAFQDTTKSVKNLYVVDFDIGNGKQYINLLQELHVSLNGSPAMLKITTVTVNIHDDNLKSIRELLGREAESLGIGFEFKPVNLNLIELTRESLNCDSEDILAVNFTFNLYKIPDESVSTENPCDTLLRQVKSLSPSIVTVLEQEMNTNTTPLVSRVVETCSYYSTLLESIEFTMDHDSYERLKLEKGLSMKMRNAVACEGRDRVERCEVFEKWRARMSMAGFRLNPMSPKVTELVTSRLIQGSRITVHEENGGVCFGWMGKTLNVASSWC*