Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1353170 | XP_013470325.1 | 87.963 | 324 | 25 | 5 | 1 | 318 | 1 | 316 | 0.0 | 513 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1353170 | sp|Q8VZ20|ASR3_ARATH | 45.732 | 328 | 126 | 12 | 16 | 318 | 14 | 314 | 2.04e-74 | 234 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1353170 | A0A072VSJ7 | 87.963 | 324 | 25 | 5 | 1 | 318 | 1 | 316 | 0.0 | 513 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1353170 | TF | Trihelix |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1353170 | MtrunA17_Chr1g0211061 | 87.963 | 324 | 25 | 5 | 1 | 318 | 1 | 316 | 0.0 | 513 |
| Msa1353170 | MtrunA17_Chr7g0221451 | 70.402 | 348 | 67 | 8 | 1 | 318 | 1 | 342 | 2.24e-150 | 426 |
| Msa1353170 | MtrunA17_Chr8g0385751 | 34.627 | 335 | 160 | 9 | 32 | 318 | 38 | 361 | 2.52e-48 | 165 |
| Msa1353170 | MtrunA17_Chr1g0199044 | 29.605 | 152 | 67 | 5 | 43 | 154 | 56 | 207 | 2.18e-12 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1353170 | AT2G33550.1 | 45.732 | 328 | 126 | 12 | 16 | 318 | 14 | 314 | 2.08e-75 | 234 |
| Msa1353170 | AT4G31270.1 | 31.250 | 112 | 71 | 2 | 43 | 154 | 19 | 124 | 3.57e-13 | 69.3 |
| Msa1353170 | AT2G35640.1 | 32.824 | 131 | 71 | 5 | 43 | 160 | 22 | 148 | 1.32e-11 | 65.1 |
Find 91 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAATTCCGTCATCGGAATT+AGG | 0.129660 | tig0013110:+8684 | None:intergenic |
| CCAACTGTAATCTCTTGTTC+TGG | 0.278506 | tig0013110:+7875 | None:intergenic |
| CAATTCCGTCATCGGAATTA+GGG | 0.284671 | tig0013110:+8685 | None:intergenic |
| TTCATATTTATGATAGTAAT+AGG | 0.301580 | tig0013110:-8191 | Msa1353170:CDS |
| GTGGACTAGGCAGGAGATTC+TGG | 0.308965 | tig0013110:-8592 | Msa1353170:CDS |
| TTGCAGTTTGATTCTGTTGC+TGG | 0.313975 | tig0013110:+7848 | None:intergenic |
| TCCGATGACGGAATTGATAA+TGG | 0.339364 | tig0013110:-8678 | Msa1353170:CDS |
| TCTTTCTCCTTCTAGATTTG+AGG | 0.339729 | tig0013110:+8008 | None:intergenic |
| GGTCGAAACGGTTCCTTGTT+TGG | 0.351084 | tig0013110:-8525 | Msa1353170:CDS |
| GAATCAAACTGCAAGTAATA+TGG | 0.352089 | tig0013110:-7839 | Msa1353170:CDS |
| GGTGGCTGCAACGGCTGTTC+CGG | 0.353509 | tig0013110:-8259 | Msa1353170:CDS |
| CGCAGATTACAAGAAGATTA+AGG | 0.365457 | tig0013110:-8403 | Msa1353170:CDS |
| GATTAAGGAGTGGGAGTCTC+AGG | 0.378865 | tig0013110:-8388 | Msa1353170:CDS |
| CACATCTTCGCCATCATTCA+CGG | 0.396485 | tig0013110:+8638 | None:intergenic |
| GATAAGCTTGCAAATGCTCT+TGG | 0.406542 | tig0013110:-7805 | Msa1353170:CDS |
| CAACTGTAATCTCTTGTTCT+GGG | 0.411973 | tig0013110:+7876 | None:intergenic |
| CTCGAGCATTGCCTTCTCCT+TGG | 0.418681 | tig0013110:+8055 | None:intergenic |
| CGTTTCGACCTGGTTTCAAC+CGG | 0.422688 | tig0013110:+8538 | None:intergenic |
| TGCTTCTCTGAGACTGAGAT+TGG | 0.427099 | tig0013110:+8102 | None:intergenic |
| GTGATGAAAGGGAGTCGTTT+TGG | 0.430091 | tig0013110:-8362 | Msa1353170:CDS |
| TCCGGTGGCTGTGGCTGCAC+CGG | 0.437897 | tig0013110:-8241 | Msa1353170:CDS |
| CAACAAGCCTCAAATCTAGA+AGG | 0.443939 | tig0013110:-8015 | Msa1353170:CDS |
| TCACCAACCACCTCTGAAAC+CGG | 0.447629 | tig0013110:+8222 | None:intergenic |
| CGATTCAGTGTAAGAAGCGA+TGG | 0.458477 | tig0013110:-8437 | Msa1353170:CDS |
| TCTGAGACTGAGATTGGAAC+AGG | 0.459059 | tig0013110:+8108 | None:intergenic |
| ATAAGCTTGCAAATGCTCTT+GGG | 0.460039 | tig0013110:-7804 | Msa1353170:CDS |
| TCCATTATCAATTCCGTCAT+CGG | 0.473675 | tig0013110:+8677 | None:intergenic |
| TCTTACACTGAATCGGTGTC+CGG | 0.476690 | tig0013110:+8445 | None:intergenic |
| CATCGCTTCTTACACTGAAT+CGG | 0.477582 | tig0013110:+8438 | None:intergenic |
| CCACTCCTCAGTGGCTTCCA+AGG | 0.481478 | tig0013110:-8072 | Msa1353170:CDS |
| AACGGCTGTTCCGGTGGCTG+TGG | 0.485143 | tig0013110:-8250 | Msa1353170:CDS |
| CCGTCATCCGCCGTGAATGA+TGG | 0.495613 | tig0013110:-8648 | Msa1353170:CDS |
| GGCGAAGATGTGAAACCAAC+GGG | 0.499148 | tig0013110:-8627 | Msa1353170:CDS |
| GAGATTCTGGTGCTAGTACA+TGG | 0.500266 | tig0013110:-8579 | Msa1353170:CDS |
| ACCGGTGCAGCCACAGCCAC+CGG | 0.509504 | tig0013110:+8240 | None:intergenic |
| TTCAGAGGTGGTTGGTGATG+AGG | 0.515224 | tig0013110:-8217 | Msa1353170:CDS |
| CTTCTCAAACGAACCAAACA+AGG | 0.517996 | tig0013110:+8512 | None:intergenic |
| GTCTCAGGTGAGTGATGAAA+GGG | 0.520228 | tig0013110:-8373 | Msa1353170:CDS |
| GGCTGCAACGGCTGTTCCGG+TGG | 0.520416 | tig0013110:-8256 | Msa1353170:CDS |
| CTCAGTGGCTTCCAAGGAGA+AGG | 0.523796 | tig0013110:-8066 | Msa1353170:CDS |
| GGTTAGAACGTAACGAGGGT+TGG | 0.525104 | tig0013110:+8706 | None:intergenic |
| CACCGTTGTAACCTTCCCGT+TGG | 0.525108 | tig0013110:+8612 | None:intergenic |
| ACGTTGAGTTGAGGAGAGAG+AGG | 0.528535 | tig0013110:-8332 | Msa1353170:CDS |
| GTGAGAAACATGGTGTGAAC+CGG | 0.529962 | tig0013110:-8464 | Msa1353170:CDS |
| GAAGGTTACAACGGTGGACT+AGG | 0.530482 | tig0013110:-8605 | Msa1353170:CDS |
| CCATCATTCACGGCGGATGA+CGG | 0.532480 | tig0013110:+8648 | None:intergenic |
| GTTACAACGGTGGACTAGGC+AGG | 0.534691 | tig0013110:-8601 | Msa1353170:CDS |
| AGAGGTGGTTGGTGATGAGG+AGG | 0.536029 | tig0013110:-8214 | Msa1353170:CDS |
| AGGAGAGAGAGGAAATTGCC+TGG | 0.537062 | tig0013110:-8321 | Msa1353170:CDS |
| TGATTCAGCGGTGGCTGCAA+CGG | 0.542719 | tig0013110:-8268 | Msa1353170:CDS |
| GCACCGGTTTCAGAGGTGGT+TGG | 0.543134 | tig0013110:-8225 | Msa1353170:CDS |
| AAGGAGAAAGAAAGAGGAAG+CGG | 0.544131 | tig0013110:-7996 | Msa1353170:CDS |
| ATCTAGAAGGAGAAAGAAAG+AGG | 0.547355 | tig0013110:-8002 | Msa1353170:CDS |
| TTGGTTCGTTTGAGAAGAAG+TGG | 0.552340 | tig0013110:-8506 | Msa1353170:CDS |
| AGTCTCAGGTGAGTGATGAA+AGG | 0.552467 | tig0013110:-8374 | Msa1353170:CDS |
| CGGTTGAAACCAGGTCGAAA+CGG | 0.555133 | tig0013110:-8537 | Msa1353170:CDS |
| CTTCTCCTTGGAAGCCACTG+AGG | 0.555485 | tig0013110:+8067 | None:intergenic |
| GAAAGAACGATGCTGAAAGC+CGG | 0.556340 | tig0013110:-8557 | Msa1353170:CDS |
| AACAAGGAACCGTTTCGACC+TGG | 0.557484 | tig0013110:+8528 | None:intergenic |
| TTACAAGAAGATTAAGGAGT+GGG | 0.557499 | tig0013110:-8397 | Msa1353170:CDS |
| AGGAAGCGGTTTGCAACAGA+AGG | 0.571454 | tig0013110:-7982 | Msa1353170:CDS |
| GCTGAAAGCCGGTTGAAACC+AGG | 0.575628 | tig0013110:-8546 | Msa1353170:CDS |
| GATTCAGTGTAAGAAGCGAT+GGG | 0.580190 | tig0013110:-8436 | Msa1353170:CDS |
| GGCTGCACCGGTTTCAGAGG+TGG | 0.581806 | tig0013110:-8229 | Msa1353170:CDS |
| CCTTGGAAGCCACTGAGGAG+TGG | 0.583205 | tig0013110:+8072 | None:intergenic |
| TGTGGCTGCACCGGTTTCAG+AGG | 0.592183 | tig0013110:-8232 | Msa1353170:CDS |
| CTTAATCTTCTTGTAATCTG+CGG | 0.598671 | tig0013110:+8404 | None:intergenic |
| CCAGAACAAGAGATTACAGT+TGG | 0.612831 | tig0013110:-7875 | Msa1353170:CDS |
| GATGCTATGTGAACAGCTAG+AGG | 0.617201 | tig0013110:-7899 | Msa1353170:CDS |
| CAGTGTGTTCCACTCCTCAG+TGG | 0.621372 | tig0013110:-8081 | Msa1353170:CDS |
| TCTTCGTACTGTGAGAAACA+TGG | 0.622882 | tig0013110:-8474 | Msa1353170:CDS |
| AACAGAAGGCAATGAAGAGG+AGG | 0.623007 | tig0013110:-7968 | Msa1353170:CDS |
| TGGCGAAGATGTGAAACCAA+CGG | 0.623950 | tig0013110:-8628 | Msa1353170:CDS |
| TCTAACCCTAATTCCGATGA+CGG | 0.628696 | tig0013110:-8690 | Msa1353170:CDS |
| GTTTGAGAAGAAGTGGACGT+TGG | 0.629824 | tig0013110:-8499 | Msa1353170:CDS |
| TAATATTCTTGATTCAGCGG+TGG | 0.630451 | tig0013110:-8277 | Msa1353170:CDS |
| ATATAATATTCTTGATTCAG+CGG | 0.631439 | tig0013110:-8280 | Msa1353170:CDS |
| TGCAACAGAAGGCAATGAAG+AGG | 0.638315 | tig0013110:-7971 | Msa1353170:CDS |
| ATTACAAGAAGATTAAGGAG+TGG | 0.640078 | tig0013110:-8398 | Msa1353170:CDS |
| CAAGGAGAAGGCAATGCTCG+AGG | 0.643488 | tig0013110:-8054 | Msa1353170:CDS |
| TCATTCACGGCGGATGACGG+TGG | 0.658142 | tig0013110:+8651 | None:intergenic |
| GGTTGATGAACGTTGAGTTG+AGG | 0.661503 | tig0013110:-8341 | Msa1353170:CDS |
| ACCTCCCAATCAAAACAACC+AGG | 0.662249 | tig0013110:+8303 | None:intergenic |
| ATTAGGGTTAGAACGTAACG+AGG | 0.673798 | tig0013110:+8701 | None:intergenic |
| AAGATGTGAAACCAACGGGA+AGG | 0.680756 | tig0013110:-8623 | Msa1353170:CDS |
| CAACGGGAAGGTTACAACGG+TGG | 0.688026 | tig0013110:-8611 | Msa1353170:CDS |
| GATAGTAATAGGAAAGTGAG+CGG | 0.698735 | tig0013110:-8180 | Msa1353170:CDS |
| AACCAACGGGAAGGTTACAA+CGG | 0.725397 | tig0013110:-8614 | Msa1353170:CDS |
| ATTCAGTGTAAGAAGCGATG+GGG | 0.726554 | tig0013110:-8435 | Msa1353170:CDS |
| TTAGGGTTAGAACGTAACGA+GGG | 0.750121 | tig0013110:+8702 | None:intergenic |
| ATCTTCGCCATCATTCACGG+CGG | 0.776820 | tig0013110:+8641 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCATATTTATGATAGTAAT+AGG | - | tig0013110:8309-8328 | Msa1353170:CDS | 15.0% |
| !! | TTCATATTTATGATAGTAAT+AGG | - | tig0013110:8309-8328 | Msa1353170:CDS | 15.0% |
| !! | ATATAATATTCTTGATTCAG+CGG | - | tig0013110:8220-8239 | Msa1353170:CDS | 20.0% |
| !! | ATATAATATTCTTGATTCAG+CGG | - | tig0013110:8220-8239 | Msa1353170:CDS | 20.0% |
| !! | ATTGAAGTGTTAGAGAAAAA+TGG | - | tig0013110:8575-8594 | Msa1353170:CDS | 25.0% |
| !! | ATTGAAGTGTTAGAGAAAAA+TGG | - | tig0013110:8575-8594 | Msa1353170:CDS | 25.0% |
| CTTAATCTTCTTGTAATCTG+CGG | + | tig0013110:8099-8118 | None:intergenic | 30.0% | |
| ATTACAAGAAGATTAAGGAG+TGG | - | tig0013110:8102-8121 | Msa1353170:CDS | 30.0% | |
| TTACAAGAAGATTAAGGAGT+GGG | - | tig0013110:8103-8122 | Msa1353170:CDS | 30.0% | |
| !! | AGATGAGTTGTTTTCTGATA+CGG | - | tig0013110:8346-8365 | Msa1353170:CDS | 30.0% |
| GAATCAAACTGCAAGTAATA+TGG | - | tig0013110:8661-8680 | Msa1353170:CDS | 30.0% | |
| CTTAATCTTCTTGTAATCTG+CGG | + | tig0013110:8099-8118 | None:intergenic | 30.0% | |
| ATTACAAGAAGATTAAGGAG+TGG | - | tig0013110:8102-8121 | Msa1353170:CDS | 30.0% | |
| TTACAAGAAGATTAAGGAGT+GGG | - | tig0013110:8103-8122 | Msa1353170:CDS | 30.0% | |
| !! | AGATGAGTTGTTTTCTGATA+CGG | - | tig0013110:8346-8365 | Msa1353170:CDS | 30.0% |
| GAATCAAACTGCAAGTAATA+TGG | - | tig0013110:8661-8680 | Msa1353170:CDS | 30.0% | |
| TCCATTATCAATTCCGTCAT+CGG | + | tig0013110:7826-7845 | None:intergenic | 35.0% | |
| CGCAGATTACAAGAAGATTA+AGG | - | tig0013110:8097-8116 | Msa1353170:CDS | 35.0% | |
| !!! | AATTGCCTGGTTGTTTTGAT+TGG | - | tig0013110:8192-8211 | Msa1353170:CDS | 35.0% |
| !!! | ATTGCCTGGTTGTTTTGATT+GGG | - | tig0013110:8193-8212 | Msa1353170:CDS | 35.0% |
| TAATATTCTTGATTCAGCGG+TGG | - | tig0013110:8223-8242 | Msa1353170:CDS | 35.0% | |
| GATAGTAATAGGAAAGTGAG+CGG | - | tig0013110:8320-8339 | Msa1353170:CDS | 35.0% | |
| TCTTTCTCCTTCTAGATTTG+AGG | + | tig0013110:8495-8514 | None:intergenic | 35.0% | |
| ATCTAGAAGGAGAAAGAAAG+AGG | - | tig0013110:8498-8517 | Msa1353170:CDS | 35.0% | |
| CAACTGTAATCTCTTGTTCT+GGG | + | tig0013110:8627-8646 | None:intergenic | 35.0% | |
| ATAAGCTTGCAAATGCTCTT+GGG | - | tig0013110:8696-8715 | Msa1353170:CDS | 35.0% | |
| TCCATTATCAATTCCGTCAT+CGG | + | tig0013110:7826-7845 | None:intergenic | 35.0% | |
| CGCAGATTACAAGAAGATTA+AGG | - | tig0013110:8097-8116 | Msa1353170:CDS | 35.0% | |
| !!! | AATTGCCTGGTTGTTTTGAT+TGG | - | tig0013110:8192-8211 | Msa1353170:CDS | 35.0% |
| !!! | ATTGCCTGGTTGTTTTGATT+GGG | - | tig0013110:8193-8212 | Msa1353170:CDS | 35.0% |
| TAATATTCTTGATTCAGCGG+TGG | - | tig0013110:8223-8242 | Msa1353170:CDS | 35.0% | |
| GATAGTAATAGGAAAGTGAG+CGG | - | tig0013110:8320-8339 | Msa1353170:CDS | 35.0% | |
| TCTTTCTCCTTCTAGATTTG+AGG | + | tig0013110:8495-8514 | None:intergenic | 35.0% | |
| ATCTAGAAGGAGAAAGAAAG+AGG | - | tig0013110:8498-8517 | Msa1353170:CDS | 35.0% | |
| CAACTGTAATCTCTTGTTCT+GGG | + | tig0013110:8627-8646 | None:intergenic | 35.0% | |
| ATAAGCTTGCAAATGCTCTT+GGG | - | tig0013110:8696-8715 | Msa1353170:CDS | 35.0% | |
| TTAGGGTTAGAACGTAACGA+GGG | + | tig0013110:7801-7820 | None:intergenic | 40.0% | |
| ATTAGGGTTAGAACGTAACG+AGG | + | tig0013110:7802-7821 | None:intergenic | 40.0% | |
| TCTAACCCTAATTCCGATGA+CGG | - | tig0013110:7810-7829 | Msa1353170:CDS | 40.0% | |
| CAATTCCGTCATCGGAATTA+GGG | + | tig0013110:7818-7837 | None:intergenic | 40.0% | |
| TCAATTCCGTCATCGGAATT+AGG | + | tig0013110:7819-7838 | None:intergenic | 40.0% | |
| !! | TCCGATGACGGAATTGATAA+TGG | - | tig0013110:7822-7841 | Msa1353170:CDS | 40.0% |
| CTTCTCAAACGAACCAAACA+AGG | + | tig0013110:7991-8010 | None:intergenic | 40.0% | |
| ! | TTGGTTCGTTTGAGAAGAAG+TGG | - | tig0013110:7994-8013 | Msa1353170:CDS | 40.0% |
| TCTTCGTACTGTGAGAAACA+TGG | - | tig0013110:8026-8045 | Msa1353170:CDS | 40.0% | |
| CATCGCTTCTTACACTGAAT+CGG | + | tig0013110:8065-8084 | None:intergenic | 40.0% | |
| GATTCAGTGTAAGAAGCGAT+GGG | - | tig0013110:8064-8083 | Msa1353170:CDS | 40.0% | |
| ATTCAGTGTAAGAAGCGATG+GGG | - | tig0013110:8065-8084 | Msa1353170:CDS | 40.0% | |
| !! | GTTGTTTTCTGATACGGAGA+AGG | - | tig0013110:8352-8371 | Msa1353170:CDS | 40.0% |
| CAACAAGCCTCAAATCTAGA+AGG | - | tig0013110:8485-8504 | Msa1353170:CDS | 40.0% | |
| AAGGAGAAAGAAAGAGGAAG+CGG | - | tig0013110:8504-8523 | Msa1353170:CDS | 40.0% | |
| CCAACTGTAATCTCTTGTTC+TGG | + | tig0013110:8628-8647 | None:intergenic | 40.0% | |
| CCAGAACAAGAGATTACAGT+TGG | - | tig0013110:8625-8644 | Msa1353170:CDS | 40.0% | |
| TTGCAGTTTGATTCTGTTGC+TGG | + | tig0013110:8655-8674 | None:intergenic | 40.0% | |
| GATAAGCTTGCAAATGCTCT+TGG | - | tig0013110:8695-8714 | Msa1353170:CDS | 40.0% | |
| TTAGGGTTAGAACGTAACGA+GGG | + | tig0013110:7801-7820 | None:intergenic | 40.0% | |
| ATTAGGGTTAGAACGTAACG+AGG | + | tig0013110:7802-7821 | None:intergenic | 40.0% | |
| TCTAACCCTAATTCCGATGA+CGG | - | tig0013110:7810-7829 | Msa1353170:CDS | 40.0% | |
| CAATTCCGTCATCGGAATTA+GGG | + | tig0013110:7818-7837 | None:intergenic | 40.0% | |
| TCAATTCCGTCATCGGAATT+AGG | + | tig0013110:7819-7838 | None:intergenic | 40.0% | |
| !! | TCCGATGACGGAATTGATAA+TGG | - | tig0013110:7822-7841 | Msa1353170:CDS | 40.0% |
| CTTCTCAAACGAACCAAACA+AGG | + | tig0013110:7991-8010 | None:intergenic | 40.0% | |
| ! | TTGGTTCGTTTGAGAAGAAG+TGG | - | tig0013110:7994-8013 | Msa1353170:CDS | 40.0% |
| TCTTCGTACTGTGAGAAACA+TGG | - | tig0013110:8026-8045 | Msa1353170:CDS | 40.0% | |
| CATCGCTTCTTACACTGAAT+CGG | + | tig0013110:8065-8084 | None:intergenic | 40.0% | |
| GATTCAGTGTAAGAAGCGAT+GGG | - | tig0013110:8064-8083 | Msa1353170:CDS | 40.0% | |
| ATTCAGTGTAAGAAGCGATG+GGG | - | tig0013110:8065-8084 | Msa1353170:CDS | 40.0% | |
| !! | GTTGTTTTCTGATACGGAGA+AGG | - | tig0013110:8352-8371 | Msa1353170:CDS | 40.0% |
| CAACAAGCCTCAAATCTAGA+AGG | - | tig0013110:8485-8504 | Msa1353170:CDS | 40.0% | |
| AAGGAGAAAGAAAGAGGAAG+CGG | - | tig0013110:8504-8523 | Msa1353170:CDS | 40.0% | |
| CCAACTGTAATCTCTTGTTC+TGG | + | tig0013110:8628-8647 | None:intergenic | 40.0% | |
| CCAGAACAAGAGATTACAGT+TGG | - | tig0013110:8625-8644 | Msa1353170:CDS | 40.0% | |
| TTGCAGTTTGATTCTGTTGC+TGG | + | tig0013110:8655-8674 | None:intergenic | 40.0% | |
| GATAAGCTTGCAAATGCTCT+TGG | - | tig0013110:8695-8714 | Msa1353170:CDS | 40.0% | |
| CACATCTTCGCCATCATTCA+CGG | + | tig0013110:7865-7884 | None:intergenic | 45.0% | |
| TGGCGAAGATGTGAAACCAA+CGG | - | tig0013110:7872-7891 | Msa1353170:CDS | 45.0% | |
| AAGATGTGAAACCAACGGGA+AGG | - | tig0013110:7877-7896 | Msa1353170:CDS | 45.0% | |
| AACCAACGGGAAGGTTACAA+CGG | - | tig0013110:7886-7905 | Msa1353170:CDS | 45.0% | |
| ! | GAGATTCTGGTGCTAGTACA+TGG | - | tig0013110:7921-7940 | Msa1353170:CDS | 45.0% |
| GAAAGAACGATGCTGAAAGC+CGG | - | tig0013110:7943-7962 | Msa1353170:CDS | 45.0% | |
| GTTTGAGAAGAAGTGGACGT+TGG | - | tig0013110:8001-8020 | Msa1353170:CDS | 45.0% | |
| GTGAGAAACATGGTGTGAAC+CGG | - | tig0013110:8036-8055 | Msa1353170:CDS | 45.0% | |
| ! | TCTTACACTGAATCGGTGTC+CGG | + | tig0013110:8058-8077 | None:intergenic | 45.0% |
| CGATTCAGTGTAAGAAGCGA+TGG | - | tig0013110:8063-8082 | Msa1353170:CDS | 45.0% | |
| AGTCTCAGGTGAGTGATGAA+AGG | - | tig0013110:8126-8145 | Msa1353170:CDS | 45.0% | |
| GTCTCAGGTGAGTGATGAAA+GGG | - | tig0013110:8127-8146 | Msa1353170:CDS | 45.0% | |
| ! | GTGATGAAAGGGAGTCGTTT+TGG | - | tig0013110:8138-8157 | Msa1353170:CDS | 45.0% |
| !! | GGTTGATGAACGTTGAGTTG+AGG | - | tig0013110:8159-8178 | Msa1353170:CDS | 45.0% |
| ACCTCCCAATCAAAACAACC+AGG | + | tig0013110:8200-8219 | None:intergenic | 45.0% | |
| ! | TCTGAGACTGAGATTGGAAC+AGG | + | tig0013110:8395-8414 | None:intergenic | 45.0% |
| !! | TGCTTCTCTGAGACTGAGAT+TGG | + | tig0013110:8401-8420 | None:intergenic | 45.0% |
| TGCAACAGAAGGCAATGAAG+AGG | - | tig0013110:8529-8548 | Msa1353170:CDS | 45.0% | |
| AACAGAAGGCAATGAAGAGG+AGG | - | tig0013110:8532-8551 | Msa1353170:CDS | 45.0% | |
| GATGCTATGTGAACAGCTAG+AGG | - | tig0013110:8601-8620 | Msa1353170:CDS | 45.0% | |
| CACATCTTCGCCATCATTCA+CGG | + | tig0013110:7865-7884 | None:intergenic | 45.0% | |
| TGGCGAAGATGTGAAACCAA+CGG | - | tig0013110:7872-7891 | Msa1353170:CDS | 45.0% | |
| AAGATGTGAAACCAACGGGA+AGG | - | tig0013110:7877-7896 | Msa1353170:CDS | 45.0% | |
| AACCAACGGGAAGGTTACAA+CGG | - | tig0013110:7886-7905 | Msa1353170:CDS | 45.0% | |
| ! | GAGATTCTGGTGCTAGTACA+TGG | - | tig0013110:7921-7940 | Msa1353170:CDS | 45.0% |
| GAAAGAACGATGCTGAAAGC+CGG | - | tig0013110:7943-7962 | Msa1353170:CDS | 45.0% | |
| GTTTGAGAAGAAGTGGACGT+TGG | - | tig0013110:8001-8020 | Msa1353170:CDS | 45.0% | |
| GTGAGAAACATGGTGTGAAC+CGG | - | tig0013110:8036-8055 | Msa1353170:CDS | 45.0% | |
| ! | TCTTACACTGAATCGGTGTC+CGG | + | tig0013110:8058-8077 | None:intergenic | 45.0% |
| CGATTCAGTGTAAGAAGCGA+TGG | - | tig0013110:8063-8082 | Msa1353170:CDS | 45.0% | |
| AGTCTCAGGTGAGTGATGAA+AGG | - | tig0013110:8126-8145 | Msa1353170:CDS | 45.0% | |
| GTCTCAGGTGAGTGATGAAA+GGG | - | tig0013110:8127-8146 | Msa1353170:CDS | 45.0% | |
| ! | GTGATGAAAGGGAGTCGTTT+TGG | - | tig0013110:8138-8157 | Msa1353170:CDS | 45.0% |
| !! | GGTTGATGAACGTTGAGTTG+AGG | - | tig0013110:8159-8178 | Msa1353170:CDS | 45.0% |
| ACCTCCCAATCAAAACAACC+AGG | + | tig0013110:8200-8219 | None:intergenic | 45.0% | |
| ! | TCTGAGACTGAGATTGGAAC+AGG | + | tig0013110:8395-8414 | None:intergenic | 45.0% |
| !! | TGCTTCTCTGAGACTGAGAT+TGG | + | tig0013110:8401-8420 | None:intergenic | 45.0% |
| TGCAACAGAAGGCAATGAAG+AGG | - | tig0013110:8529-8548 | Msa1353170:CDS | 45.0% | |
| AACAGAAGGCAATGAAGAGG+AGG | - | tig0013110:8532-8551 | Msa1353170:CDS | 45.0% | |
| GATGCTATGTGAACAGCTAG+AGG | - | tig0013110:8601-8620 | Msa1353170:CDS | 45.0% | |
| GGTTAGAACGTAACGAGGGT+TGG | + | tig0013110:7797-7816 | None:intergenic | 50.0% | |
| ATCTTCGCCATCATTCACGG+CGG | + | tig0013110:7862-7881 | None:intergenic | 50.0% | |
| GGCGAAGATGTGAAACCAAC+GGG | - | tig0013110:7873-7892 | Msa1353170:CDS | 50.0% | |
| ! | GAAGGTTACAACGGTGGACT+AGG | - | tig0013110:7895-7914 | Msa1353170:CDS | 50.0% |
| CGTTTCGACCTGGTTTCAAC+CGG | + | tig0013110:7965-7984 | None:intergenic | 50.0% | |
| CGGTTGAAACCAGGTCGAAA+CGG | - | tig0013110:7963-7982 | Msa1353170:CDS | 50.0% | |
| AACAAGGAACCGTTTCGACC+TGG | + | tig0013110:7975-7994 | None:intergenic | 50.0% | |
| GGTCGAAACGGTTCCTTGTT+TGG | - | tig0013110:7975-7994 | Msa1353170:CDS | 50.0% | |
| GATTAAGGAGTGGGAGTCTC+AGG | - | tig0013110:8112-8131 | Msa1353170:CDS | 50.0% | |
| !! | ACGTTGAGTTGAGGAGAGAG+AGG | - | tig0013110:8168-8187 | Msa1353170:CDS | 50.0% |
| AGGAGAGAGAGGAAATTGCC+TGG | - | tig0013110:8179-8198 | Msa1353170:CDS | 50.0% | |
| !!! | GCCTGGTTGTTTTGATTGGG+AGG | - | tig0013110:8196-8215 | Msa1353170:CDS | 50.0% |
| !! | TCACCAACCACCTCTGAAAC+CGG | + | tig0013110:8281-8300 | None:intergenic | 50.0% |
| !! | TTCAGAGGTGGTTGGTGATG+AGG | - | tig0013110:8283-8302 | Msa1353170:CDS | 50.0% |
| AGGAAGCGGTTTGCAACAGA+AGG | - | tig0013110:8518-8537 | Msa1353170:CDS | 50.0% | |
| GGTTAGAACGTAACGAGGGT+TGG | + | tig0013110:7797-7816 | None:intergenic | 50.0% | |
| ATCTTCGCCATCATTCACGG+CGG | + | tig0013110:7862-7881 | None:intergenic | 50.0% | |
| GGCGAAGATGTGAAACCAAC+GGG | - | tig0013110:7873-7892 | Msa1353170:CDS | 50.0% | |
| ! | GAAGGTTACAACGGTGGACT+AGG | - | tig0013110:7895-7914 | Msa1353170:CDS | 50.0% |
| CGTTTCGACCTGGTTTCAAC+CGG | + | tig0013110:7965-7984 | None:intergenic | 50.0% | |
| CGGTTGAAACCAGGTCGAAA+CGG | - | tig0013110:7963-7982 | Msa1353170:CDS | 50.0% | |
| AACAAGGAACCGTTTCGACC+TGG | + | tig0013110:7975-7994 | None:intergenic | 50.0% | |
| GGTCGAAACGGTTCCTTGTT+TGG | - | tig0013110:7975-7994 | Msa1353170:CDS | 50.0% | |
| GATTAAGGAGTGGGAGTCTC+AGG | - | tig0013110:8112-8131 | Msa1353170:CDS | 50.0% | |
| !! | ACGTTGAGTTGAGGAGAGAG+AGG | - | tig0013110:8168-8187 | Msa1353170:CDS | 50.0% |
| AGGAGAGAGAGGAAATTGCC+TGG | - | tig0013110:8179-8198 | Msa1353170:CDS | 50.0% | |
| !!! | GCCTGGTTGTTTTGATTGGG+AGG | - | tig0013110:8196-8215 | Msa1353170:CDS | 50.0% |
| !! | TCACCAACCACCTCTGAAAC+CGG | + | tig0013110:8281-8300 | None:intergenic | 50.0% |
| !! | TTCAGAGGTGGTTGGTGATG+AGG | - | tig0013110:8283-8302 | Msa1353170:CDS | 50.0% |
| AGGAAGCGGTTTGCAACAGA+AGG | - | tig0013110:8518-8537 | Msa1353170:CDS | 50.0% | |
| CCATCATTCACGGCGGATGA+CGG | + | tig0013110:7855-7874 | None:intergenic | 55.0% | |
| CACCGTTGTAACCTTCCCGT+TGG | + | tig0013110:7891-7910 | None:intergenic | 55.0% | |
| CAACGGGAAGGTTACAACGG+TGG | - | tig0013110:7889-7908 | Msa1353170:CDS | 55.0% | |
| !! | GTTACAACGGTGGACTAGGC+AGG | - | tig0013110:7899-7918 | Msa1353170:CDS | 55.0% |
| !! | GTGGACTAGGCAGGAGATTC+TGG | - | tig0013110:7908-7927 | Msa1353170:CDS | 55.0% |
| GCTGAAAGCCGGTTGAAACC+AGG | - | tig0013110:7954-7973 | Msa1353170:CDS | 55.0% | |
| TGATTCAGCGGTGGCTGCAA+CGG | - | tig0013110:8232-8251 | Msa1353170:CDS | 55.0% | |
| !! | AGAGGTGGTTGGTGATGAGG+AGG | - | tig0013110:8286-8305 | Msa1353170:CDS | 55.0% |
| CAGTGTGTTCCACTCCTCAG+TGG | - | tig0013110:8419-8438 | Msa1353170:CDS | 55.0% | |
| CTTCTCCTTGGAAGCCACTG+AGG | + | tig0013110:8436-8455 | None:intergenic | 55.0% | |
| CTCAGTGGCTTCCAAGGAGA+AGG | - | tig0013110:8434-8453 | Msa1353170:CDS | 55.0% | |
| ! | CTCGAGCATTGCCTTCTCCT+TGG | + | tig0013110:8448-8467 | None:intergenic | 55.0% |
| CAAGGAGAAGGCAATGCTCG+AGG | - | tig0013110:8446-8465 | Msa1353170:CDS | 55.0% | |
| CCATCATTCACGGCGGATGA+CGG | + | tig0013110:7855-7874 | None:intergenic | 55.0% | |
| CACCGTTGTAACCTTCCCGT+TGG | + | tig0013110:7891-7910 | None:intergenic | 55.0% | |
| CAACGGGAAGGTTACAACGG+TGG | - | tig0013110:7889-7908 | Msa1353170:CDS | 55.0% | |
| !! | GTTACAACGGTGGACTAGGC+AGG | - | tig0013110:7899-7918 | Msa1353170:CDS | 55.0% |
| !! | GTGGACTAGGCAGGAGATTC+TGG | - | tig0013110:7908-7927 | Msa1353170:CDS | 55.0% |
| GCTGAAAGCCGGTTGAAACC+AGG | - | tig0013110:7954-7973 | Msa1353170:CDS | 55.0% | |
| TGATTCAGCGGTGGCTGCAA+CGG | - | tig0013110:8232-8251 | Msa1353170:CDS | 55.0% | |
| !! | AGAGGTGGTTGGTGATGAGG+AGG | - | tig0013110:8286-8305 | Msa1353170:CDS | 55.0% |
| CAGTGTGTTCCACTCCTCAG+TGG | - | tig0013110:8419-8438 | Msa1353170:CDS | 55.0% | |
| CTTCTCCTTGGAAGCCACTG+AGG | + | tig0013110:8436-8455 | None:intergenic | 55.0% | |
| CTCAGTGGCTTCCAAGGAGA+AGG | - | tig0013110:8434-8453 | Msa1353170:CDS | 55.0% | |
| ! | CTCGAGCATTGCCTTCTCCT+TGG | + | tig0013110:8448-8467 | None:intergenic | 55.0% |
| CAAGGAGAAGGCAATGCTCG+AGG | - | tig0013110:8446-8465 | Msa1353170:CDS | 55.0% | |
| ! | TCATTCACGGCGGATGACGG+TGG | + | tig0013110:7852-7871 | None:intergenic | 60.0% |
| CCGTCATCCGCCGTGAATGA+TGG | - | tig0013110:7852-7871 | Msa1353170:CDS | 60.0% | |
| !! | TGTGGCTGCACCGGTTTCAG+AGG | - | tig0013110:8268-8287 | Msa1353170:CDS | 60.0% |
| !! | GCACCGGTTTCAGAGGTGGT+TGG | - | tig0013110:8275-8294 | Msa1353170:CDS | 60.0% |
| CCTTGGAAGCCACTGAGGAG+TGG | + | tig0013110:8431-8450 | None:intergenic | 60.0% | |
| CCACTCCTCAGTGGCTTCCA+AGG | - | tig0013110:8428-8447 | Msa1353170:CDS | 60.0% | |
| ! | TCATTCACGGCGGATGACGG+TGG | + | tig0013110:7852-7871 | None:intergenic | 60.0% |
| CCGTCATCCGCCGTGAATGA+TGG | - | tig0013110:7852-7871 | Msa1353170:CDS | 60.0% | |
| !! | TGTGGCTGCACCGGTTTCAG+AGG | - | tig0013110:8268-8287 | Msa1353170:CDS | 60.0% |
| !! | GCACCGGTTTCAGAGGTGGT+TGG | - | tig0013110:8275-8294 | Msa1353170:CDS | 60.0% |
| CCTTGGAAGCCACTGAGGAG+TGG | + | tig0013110:8431-8450 | None:intergenic | 60.0% | |
| CCACTCCTCAGTGGCTTCCA+AGG | - | tig0013110:8428-8447 | Msa1353170:CDS | 60.0% | |
| GGTGGCTGCAACGGCTGTTC+CGG | - | tig0013110:8241-8260 | Msa1353170:CDS | 65.0% | |
| AACGGCTGTTCCGGTGGCTG+TGG | - | tig0013110:8250-8269 | Msa1353170:CDS | 65.0% | |
| !! | GGCTGCACCGGTTTCAGAGG+TGG | - | tig0013110:8271-8290 | Msa1353170:CDS | 65.0% |
| GGTGGCTGCAACGGCTGTTC+CGG | - | tig0013110:8241-8260 | Msa1353170:CDS | 65.0% | |
| AACGGCTGTTCCGGTGGCTG+TGG | - | tig0013110:8250-8269 | Msa1353170:CDS | 65.0% | |
| !! | GGCTGCACCGGTTTCAGAGG+TGG | - | tig0013110:8271-8290 | Msa1353170:CDS | 65.0% |
| GGCTGCAACGGCTGTTCCGG+TGG | - | tig0013110:8244-8263 | Msa1353170:CDS | 70.0% | |
| TCCGGTGGCTGTGGCTGCAC+CGG | - | tig0013110:8259-8278 | Msa1353170:CDS | 70.0% | |
| ACCGGTGCAGCCACAGCCAC+CGG | + | tig0013110:8263-8282 | None:intergenic | 70.0% | |
| GGCTGCAACGGCTGTTCCGG+TGG | - | tig0013110:8244-8263 | Msa1353170:CDS | 70.0% | |
| TCCGGTGGCTGTGGCTGCAC+CGG | - | tig0013110:8259-8278 | Msa1353170:CDS | 70.0% | |
| ACCGGTGCAGCCACAGCCAC+CGG | + | tig0013110:8263-8282 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0013110 | gene | 7783 | 8739 | 7783 | ID=Msa1353170;Name=Msa1353170 |
| tig0013110 | mRNA | 7783 | 8739 | 7783 | ID=Msa1353170-mRNA-1;Parent=Msa1353170;Name=Msa1353170-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|318 |
| tig0013110 | exon | 7783 | 8739 | 7783 | ID=Msa1353170-mRNA-1:exon:8541;Parent=Msa1353170-mRNA-1 |
| tig0013110 | CDS | 7783 | 8739 | 7783 | ID=Msa1353170-mRNA-1:cds;Parent=Msa1353170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
