Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1353260 | XP_013470448.1 | 80.915 | 503 | 19 | 7 | 1 | 428 | 1 | 501 | 0.0 | 746 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1353260 | sp|Q9ZT96|MTEF4_ARATH | 43.052 | 367 | 152 | 3 | 82 | 391 | 138 | 504 | 8.19e-94 | 295 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1353260 | A0A072VS35 | 80.915 | 503 | 19 | 7 | 1 | 428 | 1 | 501 | 0.0 | 746 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1353260 | TR | mTERF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1353260 | MtrunA17_Chr1g0212691 | 80.915 | 503 | 19 | 7 | 1 | 428 | 1 | 501 | 0.0 | 746 |
| Msa1353260 | MtrunA17_Chr8g0391881 | 72.603 | 365 | 54 | 6 | 34 | 354 | 12 | 374 | 1.03e-178 | 503 |
| Msa1353260 | MtrunA17_Chr5g0428941 | 43.164 | 373 | 153 | 4 | 82 | 395 | 130 | 502 | 3.55e-99 | 306 |
| Msa1353260 | MtrunA17_Chr8g0391861 | 86.607 | 112 | 13 | 1 | 317 | 428 | 1 | 110 | 3.05e-53 | 174 |
| Msa1353260 | MtrunA17_Chr8g0391871 | 90.000 | 60 | 6 | 0 | 369 | 428 | 1 | 60 | 1.24e-30 | 112 |
| Msa1353260 | MtrunA17_Chr4g0034981 | 26.646 | 319 | 203 | 7 | 67 | 377 | 290 | 585 | 1.71e-28 | 118 |
| Msa1353260 | MtrunA17_Chr2g0294671 | 26.398 | 322 | 206 | 8 | 69 | 382 | 189 | 487 | 3.71e-25 | 107 |
| Msa1353260 | MtrunA17_Chr6g0448821 | 26.073 | 303 | 200 | 6 | 87 | 383 | 78 | 362 | 1.01e-23 | 102 |
| Msa1353260 | MtrunA17_Chr5g0417641 | 26.599 | 297 | 161 | 9 | 85 | 378 | 51 | 293 | 1.35e-17 | 83.2 |
| Msa1353260 | MtrunA17_Chr4g0043941 | 21.661 | 277 | 192 | 6 | 108 | 378 | 62 | 319 | 9.74e-17 | 80.9 |
| Msa1353260 | MtrunA17_Chr2g0304101 | 26.540 | 211 | 119 | 3 | 208 | 382 | 99 | 309 | 2.47e-16 | 79.3 |
| Msa1353260 | MtrunA17_Chr5g0445491 | 25.379 | 264 | 164 | 6 | 124 | 359 | 192 | 450 | 8.19e-16 | 79.3 |
| Msa1353260 | MtrunA17_Chr2g0311181 | 24.460 | 278 | 180 | 8 | 129 | 402 | 75 | 326 | 1.32e-14 | 74.7 |
| Msa1353260 | MtrunA17_Chr3g0127891 | 21.549 | 297 | 205 | 9 | 87 | 377 | 217 | 491 | 3.76e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1353260 | AT2G44020.1 | 59.802 | 505 | 125 | 7 | 1 | 428 | 4 | 507 | 0.0 | 566 |
| Msa1353260 | AT4G02990.2 | 43.052 | 367 | 152 | 3 | 82 | 391 | 138 | 504 | 8.33e-95 | 295 |
| Msa1353260 | AT4G02990.1 | 43.052 | 367 | 152 | 3 | 82 | 391 | 138 | 504 | 8.33e-95 | 295 |
| Msa1353260 | AT2G21710.1 | 25.496 | 353 | 234 | 6 | 67 | 413 | 297 | 626 | 8.96e-33 | 131 |
| Msa1353260 | AT4G38160.4 | 25.000 | 280 | 186 | 5 | 108 | 381 | 63 | 324 | 5.24e-23 | 99.8 |
| Msa1353260 | AT4G38160.1 | 25.000 | 280 | 186 | 5 | 108 | 381 | 63 | 324 | 5.24e-23 | 99.8 |
| Msa1353260 | AT4G38160.2 | 25.000 | 280 | 186 | 5 | 108 | 381 | 63 | 324 | 9.33e-23 | 99.4 |
| Msa1353260 | AT1G78930.1 | 25.081 | 307 | 204 | 9 | 84 | 383 | 293 | 580 | 1.48e-22 | 100 |
| Msa1353260 | AT4G38160.3 | 25.000 | 280 | 186 | 5 | 108 | 381 | 63 | 324 | 1.52e-22 | 99.0 |
| Msa1353260 | AT4G14605.2 | 27.481 | 262 | 145 | 8 | 154 | 378 | 215 | 468 | 3.64e-22 | 99.0 |
| Msa1353260 | AT4G14605.1 | 27.481 | 262 | 145 | 8 | 154 | 378 | 215 | 468 | 3.64e-22 | 99.0 |
| Msa1353260 | AT2G21710.2 | 24.555 | 281 | 185 | 5 | 67 | 341 | 297 | 556 | 7.17e-21 | 95.5 |
| Msa1353260 | AT2G21710.3 | 24.373 | 279 | 184 | 5 | 67 | 339 | 297 | 554 | 4.59e-20 | 93.2 |
| Msa1353260 | AT5G54180.1 | 25.581 | 258 | 153 | 6 | 159 | 379 | 235 | 490 | 6.39e-14 | 73.9 |
| Msa1353260 | AT5G55580.2 | 22.881 | 236 | 160 | 5 | 127 | 357 | 117 | 335 | 8.62e-14 | 73.2 |
| Msa1353260 | AT2G34620.1 | 26.190 | 210 | 119 | 3 | 208 | 381 | 85 | 294 | 1.38e-13 | 71.6 |
| Msa1353260 | AT5G55580.1 | 23.305 | 236 | 159 | 5 | 127 | 357 | 223 | 441 | 3.13e-13 | 71.6 |
| Msa1353260 | AT2G03050.1 | 31.100 | 209 | 129 | 7 | 181 | 381 | 71 | 272 | 1.92e-12 | 67.8 |
| Msa1353260 | AT2G03050.2 | 31.100 | 209 | 129 | 7 | 181 | 381 | 72 | 273 | 2.23e-12 | 67.8 |
| Msa1353260 | AT2G36000.2 | 24.681 | 235 | 153 | 8 | 162 | 385 | 94 | 315 | 6.65e-11 | 63.5 |
Find 97 sgRNAs with CRISPR-Local
Find 360 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATCAGTATCCTTTGATTT+TGG | 0.075546 | tig0013114:+84140 | Msa1353260:CDS |
| GTTGATTACTTGATTAATTT+AGG | 0.115322 | tig0013114:+88007 | Msa1353260:CDS |
| GTTGAGTTTATTCAGAAATT+AGG | 0.154219 | tig0013114:+84099 | Msa1353260:CDS |
| CCTAAAATTGTTTGAAGTTT+GGG | 0.180617 | tig0013114:-83863 | None:intergenic |
| TCCTAAAATTGTTTGAAGTT+TGG | 0.211802 | tig0013114:-83864 | None:intergenic |
| GCTCAGTATCCACAGATTAT+TGG | 0.226147 | tig0013114:+88169 | Msa1353260:CDS |
| CATCTCGTATTCGGGAAATT+TGG | 0.226817 | tig0013114:-83926 | None:intergenic |
| CTCAGTATCCACAGATTATT+GGG | 0.260746 | tig0013114:+88170 | Msa1353260:CDS |
| TTGTTTGAAGTTTGGGGATT+TGG | 0.270604 | tig0013114:-83856 | None:intergenic |
| TTGATTACTTGATTAATTTA+GGG | 0.271261 | tig0013114:+88008 | Msa1353260:CDS |
| TCACTTATAGTTTGGAATCT+AGG | 0.287748 | tig0013114:+88500 | Msa1353260:CDS |
| AGAATACTTCACTTATAGTT+TGG | 0.295127 | tig0013114:+88492 | Msa1353260:CDS |
| GTTGATTGTTTGATTAGTTT+TGG | 0.307251 | tig0013114:+88115 | Msa1353260:CDS |
| CTCTTAAGCCTCTGGTATCT+AGG | 0.309752 | tig0013114:-88529 | None:intergenic |
| GGATAAAGTGTTCATTGAAT+TGG | 0.316271 | tig0013114:+88557 | Msa1353260:CDS |
| GATTATTGGGTTGCCTCTTA+AGG | 0.318484 | tig0013114:+88183 | Msa1353260:CDS |
| ATTCGGGAAATTTGGAATCT+TGG | 0.321586 | tig0013114:-83918 | None:intergenic |
| AACAGTAGGCATCTCGTATT+CGG | 0.325045 | tig0013114:-83935 | None:intergenic |
| TGGGGATTTGGAAGTGCATT+TGG | 0.329507 | tig0013114:-83844 | None:intergenic |
| TTGAGTTTATTCAGAAATTA+GGG | 0.329984 | tig0013114:+84100 | Msa1353260:CDS |
| GAAGACAATTTAGCCTTAAG+AGG | 0.360188 | tig0013114:-88196 | None:intergenic |
| AAACTATAAGTGAAGTATTC+TGG | 0.362016 | tig0013114:-88490 | None:intergenic |
| TCAAAATGTGATTATGAAAC+CGG | 0.364444 | tig0013114:+88309 | Msa1353260:CDS |
| CTAATCAAACAATCAACATT+AGG | 0.365413 | tig0013114:-88109 | None:intergenic |
| ATCTGAAACTATATCATTCC+CGG | 0.367449 | tig0013114:-88686 | None:intergenic |
| TTCGGGAAATTTGGAATCTT+GGG | 0.373205 | tig0013114:-83917 | None:intergenic |
| GAAGTGCATTTGGATTTAAT+TGG | 0.374790 | tig0013114:-83834 | None:intergenic |
| TCCCCTTGCTCTTAAGCCTC+TGG | 0.375995 | tig0013114:-88537 | None:intergenic |
| GAGATTTGAAGAGAGATTGC+AGG | 0.401297 | tig0013114:+88600 | Msa1353260:CDS |
| GTCGCAGGATGTGGCTAGTA+TGG | 0.403205 | tig0013114:+88360 | Msa1353260:CDS |
| GAGAAAAGAGCTTATTTACT+TGG | 0.423672 | tig0013114:+88061 | Msa1353260:CDS |
| ACAGTAGGCATCTCGTATTC+GGG | 0.424676 | tig0013114:-83934 | None:intergenic |
| CTCATGACTTCAACGGTTGA+AGG | 0.424949 | tig0013114:-84069 | None:intergenic |
| TATTCAGAAATTAGGGTTAA+CGG | 0.433903 | tig0013114:+84107 | Msa1353260:CDS |
| GCAATCTCTCTTCAAATCTC+TGG | 0.437449 | tig0013114:-88597 | None:intergenic |
| CATCCTAGCTAGAATCCTCT+TGG | 0.440822 | tig0013114:-88035 | None:intergenic |
| GAATGAAGGACCTATACTTT+CGG | 0.441319 | tig0013114:-88638 | None:intergenic |
| ACCACCCTTGCAAACCCTTC+CGG | 0.446986 | tig0013114:-88256 | None:intergenic |
| ATAGGTCCTTCATTCTGTAT+TGG | 0.452739 | tig0013114:+88646 | Msa1353260:CDS |
| TATAGTTTCAGATGAGGAAG+AGG | 0.454451 | tig0013114:+88696 | Msa1353260:CDS |
| TACTTCTTCAAAAGTGAGAT+GGG | 0.459036 | tig0013114:+88439 | Msa1353260:CDS |
| GAGGAAGGAATGTTTGCCTT+CGG | 0.461475 | tig0013114:+88141 | Msa1353260:CDS |
| CGAGATGCCTACTGTTACAT+GGG | 0.462699 | tig0013114:+83942 | Msa1353260:CDS |
| GCGAAACGAGTTTCTCTTTG+CGG | 0.473966 | tig0013114:-83978 | None:intergenic |
| TCCGGAAGGGTTTGCAAGGG+TGG | 0.482240 | tig0013114:+88255 | Msa1353260:CDS |
| GGGATTTCTAGGTCTAAACT+TGG | 0.492563 | tig0013114:+84216 | Msa1353260:CDS |
| CTAAAATTGTTTGAAGTTTG+GGG | 0.495684 | tig0013114:-83862 | None:intergenic |
| GGTCCTTCATTCTGTATTGG+TGG | 0.495994 | tig0013114:+88649 | Msa1353260:CDS |
| GTTACATGGGGTGTCATTCA+AGG | 0.496359 | tig0013114:+83955 | Msa1353260:CDS |
| GGAAGGGTTTGCAAGGGTGG+TGG | 0.497371 | tig0013114:+88258 | Msa1353260:CDS |
| TACCAGAGGCTTAAGAGCAA+GGG | 0.502139 | tig0013114:+88535 | Msa1353260:CDS |
| GGTGATCAAGTGTCCTCAAT+TGG | 0.503619 | tig0013114:+88381 | Msa1353260:CDS |
| GGCAATACCGTCGCAGGATG+TGG | 0.504137 | tig0013114:+88351 | Msa1353260:CDS |
| TTTGAAGCTTAAGATTGATC+CGG | 0.506836 | tig0013114:+88237 | Msa1353260:CDS |
| TTACTTCTTCAAAAGTGAGA+TGG | 0.508844 | tig0013114:+88438 | Msa1353260:CDS |
| ATCCTAGCTAGAATCCTCTT+GGG | 0.509708 | tig0013114:-88034 | None:intergenic |
| ACGAGATGCCTACTGTTACA+TGG | 0.523419 | tig0013114:+83941 | Msa1353260:CDS |
| ACTCGCAGCGCAACCAATTG+AGG | 0.528224 | tig0013114:-88394 | None:intergenic |
| TATATCGAAACCGAAAGTAT+AGG | 0.540273 | tig0013114:+88628 | Msa1353260:CDS |
| GTCCTTCATTCTGTATTGGT+GGG | 0.540317 | tig0013114:+88650 | Msa1353260:CDS |
| AGCTTAAGATTGATCCGGAA+GGG | 0.556415 | tig0013114:+88242 | Msa1353260:CDS |
| AGATTTGAAGAGAGATTGCA+GGG | 0.561148 | tig0013114:+88601 | Msa1353260:CDS |
| GGGAAATTTGGAATCTTGGG+TGG | 0.563247 | tig0013114:-83914 | None:intergenic |
| GAGGATTCTAGCTAGGATGC+TGG | 0.563980 | tig0013114:+88039 | Msa1353260:CDS |
| GCAAAGAGAAACTCGTTTCG+CGG | 0.565498 | tig0013114:+83980 | Msa1353260:CDS |
| ATACCAGAGGCTTAAGAGCA+AGG | 0.565715 | tig0013114:+88534 | Msa1353260:CDS |
| TTCCCACCAATACAGAATGA+AGG | 0.566084 | tig0013114:-88652 | None:intergenic |
| CTTCAACCGTTGAAGTCATG+AGG | 0.566630 | tig0013114:+84070 | Msa1353260:CDS |
| TTGATCCGGAAGGGTTTGCA+AGG | 0.567631 | tig0013114:+88251 | Msa1353260:CDS |
| CAAAGAGAAACTCGTTTCGC+GGG | 0.570276 | tig0013114:+83981 | Msa1353260:CDS |
| ACACTAGCATGCAAAACTTG+TGG | 0.577739 | tig0013114:-84258 | None:intergenic |
| TGGTAGGGCAATACCGTCGC+AGG | 0.580954 | tig0013114:+88345 | Msa1353260:CDS |
| GAGACCTGTAAAAGAGCTTG+TGG | 0.581965 | tig0013114:+88462 | Msa1353260:CDS |
| ACGTTCCCTCATGACTTCAA+CGG | 0.586865 | tig0013114:-84076 | None:intergenic |
| TTAATCAAGTAATCAACAAG+AGG | 0.593195 | tig0013114:-88001 | None:intergenic |
| ACACTACAACCCAAAATCAA+AGG | 0.594517 | tig0013114:-84150 | None:intergenic |
| TTAATTTAGGGTTGCCCAAG+AGG | 0.597031 | tig0013114:+88020 | Msa1353260:CDS |
| ACCAGAGGCTTAAGAGCAAG+GGG | 0.605082 | tig0013114:+88536 | Msa1353260:CDS |
| TCTGAAACTATATCATTCCC+GGG | 0.612098 | tig0013114:-88685 | None:intergenic |
| GTGGGAAATTAGAGCTACCC+GGG | 0.615038 | tig0013114:+88668 | Msa1353260:CDS |
| TGCCCAAGAGGATTCTAGCT+AGG | 0.618938 | tig0013114:+88032 | Msa1353260:CDS |
| AAGCTTAAGATTGATCCGGA+AGG | 0.621599 | tig0013114:+88241 | Msa1353260:CDS |
| GGTGGGAAATTAGAGCTACC+CGG | 0.623613 | tig0013114:+88667 | Msa1353260:CDS |
| AGAGGCAACCCAATAATCTG+TGG | 0.627647 | tig0013114:-88178 | None:intergenic |
| GGTGGTGGAGAAGATGCCAC+AGG | 0.628330 | tig0013114:+88273 | Msa1353260:CDS |
| TTCAACCGTTGAAGTCATGA+GGG | 0.641557 | tig0013114:+84071 | Msa1353260:CDS |
| ACTTCTTCAAAAGTGAGATG+GGG | 0.645282 | tig0013114:+88440 | Msa1353260:CDS |
| ATGACACCCCATGTAACAGT+AGG | 0.649004 | tig0013114:-83949 | None:intergenic |
| TGATGAAGACTAACCACCTG+TGG | 0.651476 | tig0013114:-88289 | None:intergenic |
| TGATCCGGAAGGGTTTGCAA+GGG | 0.654444 | tig0013114:+88252 | Msa1353260:CDS |
| GAATGATATAGTTTCAGATG+AGG | 0.656227 | tig0013114:+88690 | Msa1353260:CDS |
| TGCGTGATGAAAGTATATTG+AGG | 0.677283 | tig0013114:-83783 | None:intergenic |
| ATACTAGCCACATCCTGCGA+CGG | 0.678965 | tig0013114:-88358 | None:intergenic |
| GGATACTGAGCAATAACCGA+AGG | 0.679020 | tig0013114:-88157 | None:intergenic |
| GGTGGAGAAGATGCCACAGG+TGG | 0.679410 | tig0013114:+88276 | Msa1353260:CDS |
| GGATTAAACCTAGATACCAG+AGG | 0.689589 | tig0013114:+88521 | Msa1353260:CDS |
| GAGATGCCTACTGTTACATG+GGG | 0.725465 | tig0013114:+83943 | Msa1353260:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTTTAGAACATAATAAT+TGG | + | tig0013114:86616-86635 | Msa1353260:intron | 10.0% |
| !!! | ATAAGTTGTTTTTTGAAAAT+AGG | - | tig0013114:84925-84944 | None:intergenic | 15.0% |
| !!! | TATTGTTTTTAAGAGAAAAA+AGG | + | tig0013114:86068-86087 | Msa1353260:intron | 15.0% |
| !!! | ATTGTTTTTAAGAGAAAAAA+GGG | + | tig0013114:86069-86088 | Msa1353260:intron | 15.0% |
| !!! | TATTATGTTCTAAAATTTGA+GGG | - | tig0013114:86614-86633 | None:intergenic | 15.0% |
| !!! | TTATTATGTTCTAAAATTTG+AGG | - | tig0013114:86615-86634 | None:intergenic | 15.0% |
| !!! | ATTATTACTTATTTTCATGA+AGG | + | tig0013114:86738-86757 | Msa1353260:intron | 15.0% |
| !! | TAAAATGGAAATAAAAATAG+TGG | - | tig0013114:86773-86792 | None:intergenic | 15.0% |
| !!! | ATAATTTGTTTTTGAAAAAG+AGG | + | tig0013114:87243-87262 | Msa1353260:intron | 15.0% |
| !!! | ATAATTTGTTTTTGAAAAAG+AGG | + | tig0013114:87243-87262 | Msa1353260:intron | 15.0% |
| !!! | TATTGTTTTTAAGAGAAAAA+AGG | + | tig0013114:86068-86087 | Msa1353260:intron | 15.0% |
| !!! | ATTGTTTTTAAGAGAAAAAA+GGG | + | tig0013114:86069-86088 | Msa1353260:intron | 15.0% |
| !! | TTGATTACTTGATTAATTTA+GGG | + | tig0013114:88008-88027 | Msa1353260:CDS | 15.0% |
| !! | TTGAGTTTATTCAGAAATTA+GGG | + | tig0013114:84100-84119 | Msa1353260:CDS | 20.0% |
| !!! | TTAGGGTATTTAGAAAAAAT+TGG | + | tig0013114:84195-84214 | Msa1353260:CDS | 20.0% |
| !!! | TAGGGTATTTAGAAAAAATT+GGG | + | tig0013114:84196-84215 | Msa1353260:CDS | 20.0% |
| !!! | TTTTTAAAACTTGCAAACAA+GGG | - | tig0013114:84447-84466 | None:intergenic | 20.0% |
| !!! | TTTTTTAAAACTTGCAAACA+AGG | - | tig0013114:84448-84467 | None:intergenic | 20.0% |
| !!! | TTGCAAGTTTTAAAAAAACA+AGG | + | tig0013114:84451-84470 | Msa1353260:intron | 20.0% |
| !!! | TGCAAGTTTTAAAAAAACAA+GGG | + | tig0013114:84452-84471 | Msa1353260:intron | 20.0% |
| !! | GTCAATTTGAATTATTATGA+GGG | - | tig0013114:84578-84597 | None:intergenic | 20.0% |
| !! | TGTCAATTTGAATTATTATG+AGG | - | tig0013114:84579-84598 | None:intergenic | 20.0% |
| !!! | ATAAGTTGTTTTTTGAAAAG+AGG | - | tig0013114:87285-87304 | None:intergenic | 20.0% |
| !! | CAAAATCAACTTATTCAAAA+AGG | + | tig0013114:84871-84890 | Msa1353260:intron | 20.0% |
| !! | AAAAACAACTTATTCAAAAC+AGG | + | tig0013114:84694-84713 | Msa1353260:intron | 20.0% |
| !!! | ATAAGTTGTTTTTGAAAAAG+AGG | - | tig0013114:84985-85004 | None:intergenic | 20.0% |
| !!! | AATAAGTTGTTTTGAAAAAG+AGG | + | tig0013114:85517-85536 | Msa1353260:intron | 20.0% |
| !!! | AGCTGTTTTTAAAAAATAGA+TGG | + | tig0013114:85973-85992 | Msa1353260:intron | 20.0% |
| !! | TAAGAATAAAAACTACACTA+AGG | - | tig0013114:86258-86277 | None:intergenic | 20.0% |
| !!! | GTTTAATTTCTCTTCTATTT+AGG | + | tig0013114:86278-86297 | Msa1353260:intron | 20.0% |
| !! | ATATTTCTCTTCAAATGTTT+GGG | - | tig0013114:86505-86524 | None:intergenic | 20.0% |
| !! | AGCATATATTACATAGAAAT+AGG | - | tig0013114:87055-87074 | None:intergenic | 20.0% |
| !! | ATAGAAATGTTATATACCAT+TGG | - | tig0013114:87116-87135 | None:intergenic | 20.0% |
| !! | GTTGATTACTTGATTAATTT+AGG | + | tig0013114:88007-88026 | Msa1353260:CDS | 20.0% |
| !! | CTAAAATTGTTTGAAGTTTG+GGG | - | tig0013114:83865-83884 | None:intergenic | 25.0% |
| !! | CCTAAAATTGTTTGAAGTTT+GGG | - | tig0013114:83866-83885 | None:intergenic | 25.0% |
| !! | TCCTAAAATTGTTTGAAGTT+TGG | - | tig0013114:83867-83886 | None:intergenic | 25.0% |
| !! | AAACTTCAAACAATTTTAGG+AGG | + | tig0013114:83866-83885 | Msa1353260:CDS | 25.0% |
| !!! | AACTTCAAACAATTTTAGGA+GGG | + | tig0013114:83867-83886 | Msa1353260:CDS | 25.0% |
| !! | GTTTTACTATTCAATCTCTA+TGG | + | tig0013114:83889-83908 | Msa1353260:CDS | 25.0% |
| ! | GTTGAGTTTATTCAGAAATT+AGG | + | tig0013114:84099-84118 | Msa1353260:CDS | 25.0% |
| ! | TATTCAGAAATTAGGGTTAA+CGG | + | tig0013114:84107-84126 | Msa1353260:CDS | 25.0% |
| !!! | AAATCAGTATCCTTTGATTT+TGG | + | tig0013114:84140-84159 | Msa1353260:CDS | 25.0% |
| !!! | AATCAGTATCCTTTGATTTT+GGG | + | tig0013114:84141-84160 | Msa1353260:CDS | 25.0% |
| !! | AAAAACATGATTCCTGTTTT+AGG | + | tig0013114:84177-84196 | Msa1353260:CDS | 25.0% |
| !! | AAAACATGATTCCTGTTTTA+GGG | + | tig0013114:84178-84197 | Msa1353260:CDS | 25.0% |
| !! | TTTTCTAAATACCCTAAAAC+AGG | - | tig0013114:84192-84211 | None:intergenic | 25.0% |
| ! | TAGAAAAAATTGGGATTTCT+AGG | + | tig0013114:84205-84224 | Msa1353260:CDS | 25.0% |
| ! | ATGTAGAGAAAGATGATATT+GGG | + | tig0013114:84325-84344 | Msa1353260:intron | 25.0% |
| !! | CAAAAATATCCTGAACTTTT+AGG | + | tig0013114:84357-84376 | Msa1353260:intron | 25.0% |
| !! | AAAAAACAAGGGAAATGTTT+TGG | + | tig0013114:84463-84482 | Msa1353260:intron | 25.0% |
| !! | AAAAACAAGGGAAATGTTTT+GGG | + | tig0013114:84464-84483 | Msa1353260:intron | 25.0% |
| ! | GAAAAGAGATCGTAATAATT+GGG | - | tig0013114:84615-84634 | None:intergenic | 25.0% |
| ! | TGAAAAGAGATCGTAATAAT+TGG | - | tig0013114:84616-84635 | None:intergenic | 25.0% |
| !!! | ATAAGCTGATTTTGAAAAAG+AGG | - | tig0013114:84747-84766 | None:intergenic | 25.0% |
| !!! | CAATAAGTTGTTTTTGAAAG+AGG | - | tig0013114:84807-84826 | None:intergenic | 25.0% |
| !!! | ATAAGCTGATTTTGAAAAAG+AGG | - | tig0013114:84747-84766 | None:intergenic | 25.0% |
| !!! | ATAAGCTGTTTTTGAAAAAG+AGG | - | tig0013114:85577-85596 | None:intergenic | 25.0% |
| !!! | ATATGCTGTTTTTGAAAAAG+AGG | - | tig0013114:85225-85244 | None:intergenic | 25.0% |
| ! | ATAAGCTGAATTTGAAAAAG+AGG | - | tig0013114:85285-85304 | None:intergenic | 25.0% |
| !!! | ATAAGCTGTTTTTGAAAAAG+AGG | - | tig0013114:85577-85596 | None:intergenic | 25.0% |
| !!! | ATAAGCTGTTTTTGAAAAAG+AGG | - | tig0013114:85577-85596 | None:intergenic | 25.0% |
| !!! | ATATGCTGTTTTTGAAAAAG+AGG | - | tig0013114:85225-85244 | None:intergenic | 25.0% |
| ! | CAAAACAACTTATTCAAAAC+AGG | - | tig0013114:85511-85530 | None:intergenic | 25.0% |
| !!! | ATAAGCTGTTTTTGAAAAAG+AGG | + | tig0013114:85577-85596 | Msa1353260:intron | 25.0% |
| !!! | ATAAGCTGCTTTTTTAAAAG+AGG | + | tig0013114:85683-85702 | Msa1353260:intron | 25.0% |
| !! | AGTTGTTAAGAACAACTTTT+GGG | - | tig0013114:86309-86328 | None:intergenic | 25.0% |
| !! | AAGTTGTTAAGAACAACTTT+TGG | - | tig0013114:86310-86329 | None:intergenic | 25.0% |
| ! | GATATTTCTCTTCAAATGTT+TGG | - | tig0013114:86506-86525 | None:intergenic | 25.0% |
| ! | ATCCAACATTGGAAAAATAT+TGG | + | tig0013114:86562-86581 | Msa1353260:intron | 25.0% |
| !! | TTCCAATATTTTTCCAATGT+TGG | - | tig0013114:86567-86586 | None:intergenic | 25.0% |
| !! | TTTATTTCCATTTTATAGCC+AGG | + | tig0013114:86778-86797 | Msa1353260:intron | 25.0% |
| !! | TTATTTCCATTTTATAGCCA+GGG | + | tig0013114:86779-86798 | Msa1353260:intron | 25.0% |
| ! | AGGAAAATTTACACAGAAAT+TGG | - | tig0013114:87035-87054 | None:intergenic | 25.0% |
| !!! | ACACAGTATCCTTATTTTTT+AGG | + | tig0013114:87953-87972 | Msa1353260:intron | 25.0% |
| !!! | CACAGTATCCTTATTTTTTA+GGG | + | tig0013114:87954-87973 | Msa1353260:intron | 25.0% |
| ! | TTAATCAAGTAATCAACAAG+AGG | - | tig0013114:88004-88023 | None:intergenic | 25.0% |
| ! | CTAATCAAACAATCAACATT+AGG | - | tig0013114:88112-88131 | None:intergenic | 25.0% |
| !!! | GTTGATTGTTTGATTAGTTT+TGG | + | tig0013114:88115-88134 | Msa1353260:CDS | 25.0% |
| ! | TCAAAATGTGATTATGAAAC+CGG | + | tig0013114:88309-88328 | Msa1353260:CDS | 25.0% |
| !! | AAACTATAAGTGAAGTATTC+TGG | - | tig0013114:88493-88512 | None:intergenic | 25.0% |
| ! | AGAATACTTCACTTATAGTT+TGG | + | tig0013114:88492-88511 | Msa1353260:CDS | 25.0% |
| GAAGTGCATTTGGATTTAAT+TGG | - | tig0013114:83837-83856 | None:intergenic | 30.0% | |
| ! | CCCAAACTTCAAACAATTTT+AGG | + | tig0013114:83863-83882 | Msa1353260:CDS | 30.0% |
| ATCATCTTCGATTATCTCAA+GGG | + | tig0013114:84006-84025 | Msa1353260:intron | 30.0% | |
| AATTATTCCTGATGAATTGC+AGG | + | tig0013114:84035-84054 | Msa1353260:intron | 30.0% | |
| ! | CCTCTAAGAAACTTAATAAC+AGG | - | tig0013114:84300-84319 | None:intergenic | 30.0% |
| CCTGTTATTAAGTTTCTTAG+AGG | + | tig0013114:84297-84316 | Msa1353260:intron | 30.0% | |
| GATGTAGAGAAAGATGATAT+TGG | + | tig0013114:84324-84343 | Msa1353260:intron | 30.0% | |
| ! | AAAACAAGGGAAATGTTTTG+GGG | + | tig0013114:84465-84484 | Msa1353260:intron | 30.0% |
| !!! | TTTTAAAGTTCCCCCAAATT+CGG | + | tig0013114:84514-84533 | Msa1353260:intron | 30.0% |
| !!! | GAGGTTGTAATAAGCTTTTT+TGG | - | tig0013114:85702-85721 | None:intergenic | 30.0% |
| ! | GAGATTGTAATAAGCTGTTT+TGG | - | tig0013114:84846-84865 | None:intergenic | 30.0% |
| ! | TAGGTCATAATAAGCTGTTT+TGG | - | tig0013114:84906-84925 | None:intergenic | 30.0% |
| TCATCCCAAACAACTTATTA+CGG | + | tig0013114:85139-85158 | Msa1353260:intron | 30.0% | |
| !!! | GAGGTTGTAATAAGCTTTTT+TGG | + | tig0013114:85702-85721 | Msa1353260:intron | 30.0% |
| GTTAAAAAACCAACAAGGAA+AGG | - | tig0013114:86130-86149 | None:intergenic | 30.0% | |
| !!! | GTTTTTTAACTCCCAAACAA+GGG | + | tig0013114:86140-86159 | Msa1353260:intron | 30.0% |
| !!! | TTTTTTAACTCCCAAACAAG+GGG | + | tig0013114:86141-86160 | Msa1353260:intron | 30.0% |
| ATATCTTTCAAGGTAAGATG+TGG | + | tig0013114:86411-86430 | Msa1353260:intron | 30.0% | |
| ! | ACTTTGTCCTTAAGATGTTT+TGG | + | tig0013114:86446-86465 | Msa1353260:intron | 30.0% |
| TTTGACATAGTAACCATTCA+AGG | - | tig0013114:86478-86497 | None:intergenic | 30.0% | |
| TAGCTTATGGCAAATCAATT+GGG | + | tig0013114:86865-86884 | Msa1353260:intron | 30.0% | |
| TGTTGAATGTTATTAGCCAA+TGG | + | tig0013114:87097-87116 | Msa1353260:intron | 30.0% | |
| ! | GAGATCGTAATAAGTTGTTT+TGG | + | tig0013114:87202-87221 | Msa1353260:intron | 30.0% |
| ! | GAGATCGTAATAAGTTCTTT+TGG | + | tig0013114:87424-87443 | Msa1353260:intron | 30.0% |
| GTTAAAAAACCAACAAGGAA+AGG | - | tig0013114:86130-86149 | None:intergenic | 30.0% | |
| !!! | GTTTTTTAACTCCCAAACAA+GGG | + | tig0013114:86140-86159 | Msa1353260:intron | 30.0% |
| !!! | TTTTTTAACTCCCAAACAAG+GGG | + | tig0013114:86141-86160 | Msa1353260:intron | 30.0% |
| GTTGCTTATCTTGTTAGTAT+TGG | + | tig0013114:87899-87918 | Msa1353260:intron | 30.0% | |
| !! | TTAGTATTGGTGTTAATCCT+AGG | + | tig0013114:87912-87931 | Msa1353260:intron | 30.0% |
| !! | TAGTATTGGTGTTAATCCTA+GGG | + | tig0013114:87913-87932 | Msa1353260:intron | 30.0% |
| ACTCTCATCCCTAAAAAATA+AGG | - | tig0013114:87965-87984 | None:intergenic | 30.0% | |
| !!! | TATTTTTTAGGGATGAGAGT+TGG | + | tig0013114:87965-87984 | Msa1353260:CDS | 30.0% |
| GAGAAAAGAGCTTATTTACT+TGG | + | tig0013114:88061-88080 | Msa1353260:CDS | 30.0% | |
| !!! | GTTTGATTAGTTTTGGTTTG+AGG | + | tig0013114:88122-88141 | Msa1353260:CDS | 30.0% |
| ! | TTTGAAGCTTAAGATTGATC+CGG | + | tig0013114:88237-88256 | Msa1353260:CDS | 30.0% |
| TTACTTCTTCAAAAGTGAGA+TGG | + | tig0013114:88438-88457 | Msa1353260:CDS | 30.0% | |
| TACTTCTTCAAAAGTGAGAT+GGG | + | tig0013114:88439-88458 | Msa1353260:CDS | 30.0% | |
| ! | TCACTTATAGTTTGGAATCT+AGG | + | tig0013114:88500-88519 | Msa1353260:CDS | 30.0% |
| ! | GGATAAAGTGTTCATTGAAT+TGG | + | tig0013114:88557-88576 | Msa1353260:CDS | 30.0% |
| ! | TATATCGAAACCGAAAGTAT+AGG | + | tig0013114:88628-88647 | Msa1353260:CDS | 30.0% |
| ! | ATCTGAAACTATATCATTCC+CGG | - | tig0013114:88689-88708 | None:intergenic | 30.0% |
| GAATGATATAGTTTCAGATG+AGG | + | tig0013114:88690-88709 | Msa1353260:CDS | 30.0% | |
| ! | TGCGTGATGAAAGTATATTG+AGG | - | tig0013114:83786-83805 | None:intergenic | 35.0% |
| ! | TTGTTTGAAGTTTGGGGATT+TGG | - | tig0013114:83859-83878 | None:intergenic | 35.0% |
| ! | TTCGGGAAATTTGGAATCTT+GGG | - | tig0013114:83920-83939 | None:intergenic | 35.0% |
| ! | ATTCGGGAAATTTGGAATCT+TGG | - | tig0013114:83921-83940 | None:intergenic | 35.0% |
| CATCATCTTCGATTATCTCA+AGG | + | tig0013114:84005-84024 | Msa1353260:intron | 35.0% | |
| TTCGATTATCTCAAGGGTTT+GGG | + | tig0013114:84012-84031 | Msa1353260:intron | 35.0% | |
| ACACTACAACCCAAAATCAA+AGG | - | tig0013114:84153-84172 | None:intergenic | 35.0% | |
| CAAACAAAGCCTAAAAGTTC+AGG | - | tig0013114:84369-84388 | None:intergenic | 35.0% | |
| !! | AAACAAGGGAAATGTTTTGG+GGG | + | tig0013114:84466-84485 | Msa1353260:intron | 35.0% |
| ! | TTTAAAGTTCCCCCAAATTC+GGG | + | tig0013114:84515-84534 | Msa1353260:intron | 35.0% |
| AAACCAACAAGGAAAGGAAA+TGG | - | tig0013114:86124-86143 | None:intergenic | 35.0% | |
| TGGGAGTTAAAAAACCAACA+AGG | - | tig0013114:86135-86154 | None:intergenic | 35.0% | |
| !!! | GGTTTTTTAACTCCCAAACA+AGG | + | tig0013114:86139-86158 | Msa1353260:intron | 35.0% |
| ! | CTTGAAAGATATCGAGTTGT+AGG | - | tig0013114:86403-86422 | None:intergenic | 35.0% |
| CTACAACTCGATATCTTTCA+AGG | + | tig0013114:86401-86420 | Msa1353260:intron | 35.0% | |
| TTCTCTTCAAATGTTTGGGA+CGG | - | tig0013114:86501-86520 | None:intergenic | 35.0% | |
| GAAGAGAAATATCAATCCTG+CGG | + | tig0013114:86513-86532 | Msa1353260:intron | 35.0% | |
| TATGCATGAAGATATGACCA+TGG | - | tig0013114:86710-86729 | None:intergenic | 35.0% | |
| ! | CTTTTCATTCTCCTAGGATA+AGG | + | tig0013114:86819-86838 | Msa1353260:intron | 35.0% |
| ! | GAATATGTAGTGCTAGCTTA+TGG | + | tig0013114:86852-86871 | Msa1353260:intron | 35.0% |
| CTAGCTTATGGCAAATCAAT+TGG | + | tig0013114:86864-86883 | Msa1353260:intron | 35.0% | |
| AGACAAATTCTTCCATGACA+AGG | + | tig0013114:86915-86934 | Msa1353260:intron | 35.0% | |
| CATCCACTTCTCAAATTCTA+AGG | + | tig0013114:86946-86965 | Msa1353260:intron | 35.0% | |
| AGACCTTAGAATTTGAGAAG+TGG | - | tig0013114:86952-86971 | None:intergenic | 35.0% | |
| TAAGGTCTTCACAACTACAA+GGG | + | tig0013114:86964-86983 | Msa1353260:intron | 35.0% | |
| AAGGGAAAGTTGCATGTATA+AGG | + | tig0013114:86982-87001 | Msa1353260:intron | 35.0% | |
| TACACAGAAATTGGTACTTG+AGG | - | tig0013114:87026-87045 | None:intergenic | 35.0% | |
| ! | GAGATCGTAATAAGCTGTTT+TGG | + | tig0013114:87304-87323 | Msa1353260:intron | 35.0% |
| AAACCAACAAGGAAAGGAAA+TGG | - | tig0013114:86124-86143 | None:intergenic | 35.0% | |
| TGGGAGTTAAAAAACCAACA+AGG | - | tig0013114:86135-86154 | None:intergenic | 35.0% | |
| !!! | GGTTTTTTAACTCCCAAACA+AGG | + | tig0013114:86139-86158 | Msa1353260:intron | 35.0% |
| !! | ACTTTGTTTGCGAGTTTTGA+GGG | - | tig0013114:87842-87861 | None:intergenic | 35.0% |
| AAACTCGCAAACAAAGTCTT+AGG | + | tig0013114:87845-87864 | Msa1353260:intron | 35.0% | |
| AACTCGCAAACAAAGTCTTA+GGG | + | tig0013114:87846-87865 | Msa1353260:intron | 35.0% | |
| TAAGGATACTGTGTAACCAT+AGG | - | tig0013114:87947-87966 | None:intergenic | 35.0% | |
| !!! | GATTAGTTTTGGTTTGAGGA+AGG | + | tig0013114:88126-88145 | Msa1353260:CDS | 35.0% |
| CTCAGTATCCACAGATTATT+GGG | + | tig0013114:88170-88189 | Msa1353260:CDS | 35.0% | |
| !! | GAAGACAATTTAGCCTTAAG+AGG | - | tig0013114:88199-88218 | None:intergenic | 35.0% |
| ! | AAACCGGTTGAGTTTTTACT+TGG | + | tig0013114:88325-88344 | Msa1353260:CDS | 35.0% |
| CTACCAAGTAAAAACTCAAC+CGG | - | tig0013114:88331-88350 | None:intergenic | 35.0% | |
| ! | GGTTGAGTTTTTACTTGGTA+GGG | + | tig0013114:88330-88349 | Msa1353260:CDS | 35.0% |
| ACTTCTTCAAAAGTGAGATG+GGG | + | tig0013114:88440-88459 | Msa1353260:CDS | 35.0% | |
| AGATTTGAAGAGAGATTGCA+GGG | + | tig0013114:88601-88620 | Msa1353260:CDS | 35.0% | |
| GAATGAAGGACCTATACTTT+CGG | - | tig0013114:88641-88660 | None:intergenic | 35.0% | |
| ATAGGTCCTTCATTCTGTAT+TGG | + | tig0013114:88646-88665 | Msa1353260:CDS | 35.0% | |
| ! | TCTGAAACTATATCATTCCC+GGG | - | tig0013114:88688-88707 | None:intergenic | 35.0% |
| TATAGTTTCAGATGAGGAAG+AGG | + | tig0013114:88696-88715 | Msa1353260:CDS | 35.0% | |
| CATCTCGTATTCGGGAAATT+TGG | - | tig0013114:83929-83948 | None:intergenic | 40.0% | |
| AACAGTAGGCATCTCGTATT+CGG | - | tig0013114:83938-83957 | None:intergenic | 40.0% | |
| CTTCGATTATCTCAAGGGTT+TGG | + | tig0013114:84011-84030 | Msa1353260:intron | 40.0% | |
| TCCTGATGAATTGCAGGATT+TGG | + | tig0013114:84041-84060 | Msa1353260:intron | 40.0% | |
| TCCAAATCCTGCAATTCATC+AGG | - | tig0013114:84045-84064 | None:intergenic | 40.0% | |
| TTCAACCGTTGAAGTCATGA+GGG | + | tig0013114:84071-84090 | Msa1353260:CDS | 40.0% | |
| ! | GGGATTTCTAGGTCTAAACT+TGG | + | tig0013114:84216-84235 | Msa1353260:CDS | 40.0% |
| ACACTAGCATGCAAAACTTG+TGG | - | tig0013114:84261-84280 | None:intergenic | 40.0% | |
| !! | TTTAGGCTTTGTTTGCGAGT+TGG | + | tig0013114:84374-84393 | Msa1353260:intron | 40.0% |
| !! | TTAGGCTTTGTTTGCGAGTT+GGG | + | tig0013114:84375-84394 | Msa1353260:intron | 40.0% |
| !! | TTTGTTTGCGAGTTGGGTTT+TGG | + | tig0013114:84381-84400 | Msa1353260:intron | 40.0% |
| !! | AACAAGGGAAATGTTTTGGG+GGG | + | tig0013114:84467-84486 | Msa1353260:intron | 40.0% |
| !!! | AATGTTTTGGGGGGTTTAGA+AGG | + | tig0013114:84476-84495 | Msa1353260:intron | 40.0% |
| !!! | ATGTTTTGGGGGGTTTAGAA+GGG | + | tig0013114:84477-84496 | Msa1353260:intron | 40.0% |
| TTAAAGTTCCCCCAAATTCG+GGG | + | tig0013114:84516-84535 | Msa1353260:intron | 40.0% | |
| GAGGCCGTAATAAGTTGTTT+GGG | - | tig0013114:85146-85165 | None:intergenic | 40.0% | |
| AGAGGCCGTAATAAGTTGTT+TGG | - | tig0013114:85147-85166 | None:intergenic | 40.0% | |
| ! | GAGGTCGTAATAAGCTGTTT+TGG | - | tig0013114:85596-85615 | None:intergenic | 40.0% |
| ! | GAGGTCGTAATAAGCTGTTT+TGG | - | tig0013114:85596-85615 | None:intergenic | 40.0% |
| ! | GAGGTCGTAGTAAGTTGTTT+TGG | - | tig0013114:85386-85405 | None:intergenic | 40.0% |
| ! | GAGGTCGTAATAAGCTGTTT+TGG | - | tig0013114:85596-85615 | None:intergenic | 40.0% |
| ! | GAGGTCGTAATAAGCTGTTT+TGG | + | tig0013114:85596-85615 | Msa1353260:intron | 40.0% |
| CAACAAGGAAAGGAAATGGA+GGG | - | tig0013114:86120-86139 | None:intergenic | 40.0% | |
| !!! | CTTTGTTTGCGAGTTTTGAG+GGG | - | tig0013114:86235-86254 | None:intergenic | 40.0% |
| !!! | GCTTTGTTTGCGAGTTTTGA+GGG | - | tig0013114:86236-86255 | None:intergenic | 40.0% |
| TTAACAACTTTCCAGACCAG+TGG | + | tig0013114:86320-86339 | Msa1353260:intron | 40.0% | |
| ! | CATGGTAAGATCTGGAACAT+TGG | + | tig0013114:86350-86369 | Msa1353260:intron | 40.0% |
| GAGTTGTAGGATCAAACAAG+GGG | - | tig0013114:86390-86409 | None:intergenic | 40.0% | |
| CGAGTTGTAGGATCAAACAA+GGG | - | tig0013114:86391-86410 | None:intergenic | 40.0% | |
| ! | TCGAGTTGTAGGATCAAACA+AGG | - | tig0013114:86392-86411 | None:intergenic | 40.0% |
| CAAGGTAAGATGTGGAACTT+TGG | + | tig0013114:86419-86438 | Msa1353260:intron | 40.0% | |
| ! | GCGTTGACCAAAACATCTTA+AGG | - | tig0013114:86456-86475 | None:intergenic | 40.0% |
| TGAGTTATTCTTTCCTGCTC+CGG | + | tig0013114:86640-86659 | Msa1353260:intron | 40.0% | |
| ATGAAGATATGACCATGGTG+TGG | - | tig0013114:86705-86724 | None:intergenic | 40.0% | |
| AAGCATCCCTGGCTATAAAA+TGG | - | tig0013114:86788-86807 | None:intergenic | 40.0% | |
| !! | ACTTCGCTTTTCATTCTCCT+AGG | + | tig0013114:86813-86832 | Msa1353260:intron | 40.0% |
| GTCATGGAAGAATTTGTCTG+AGG | - | tig0013114:86914-86933 | None:intergenic | 40.0% | |
| CTAAGGTCTTCACAACTACA+AGG | + | tig0013114:86963-86982 | Msa1353260:intron | 40.0% | |
| TCTCCATTTCCTTTCCTTGT+TGG | + | tig0013114:87724-87743 | Msa1353260:intron | 40.0% | |
| !!! | CTTTGTTTGCGAGTTTTGAG+GGG | - | tig0013114:86235-86254 | None:intergenic | 40.0% |
| !! | GACTTTGTTTGCGAGTTTTG+AGG | - | tig0013114:87843-87862 | None:intergenic | 40.0% |
| GTCTTAGGGTTTAAGCTTGA+AGG | + | tig0013114:87860-87879 | Msa1353260:intron | 40.0% | |
| GGTGTTAATCCTAGGGATAT+TGG | + | tig0013114:87920-87939 | Msa1353260:intron | 40.0% | |
| ! | TTAATTTAGGGTTGCCCAAG+AGG | + | tig0013114:88020-88039 | Msa1353260:CDS | 40.0% |
| ATCCTAGCTAGAATCCTCTT+GGG | - | tig0013114:88037-88056 | None:intergenic | 40.0% | |
| GCTCAGTATCCACAGATTAT+TGG | + | tig0013114:88169-88188 | Msa1353260:CDS | 40.0% | |
| ! | GATTATTGGGTTGCCTCTTA+AGG | + | tig0013114:88183-88202 | Msa1353260:CDS | 40.0% |
| AAGCTTAAGATTGATCCGGA+AGG | + | tig0013114:88241-88260 | Msa1353260:CDS | 40.0% | |
| AGCTTAAGATTGATCCGGAA+GGG | + | tig0013114:88242-88261 | Msa1353260:CDS | 40.0% | |
| ! | CGGTTGAGTTTTTACTTGGT+AGG | + | tig0013114:88329-88348 | Msa1353260:CDS | 40.0% |
| ! | AACTCCACAAGCTCTTTTAC+AGG | - | tig0013114:88469-88488 | None:intergenic | 40.0% |
| GGATTAAACCTAGATACCAG+AGG | + | tig0013114:88521-88540 | Msa1353260:CDS | 40.0% | |
| GCAATCTCTCTTCAAATCTC+TGG | - | tig0013114:88600-88619 | None:intergenic | 40.0% | |
| GAGATTTGAAGAGAGATTGC+AGG | + | tig0013114:88600-88619 | Msa1353260:CDS | 40.0% | |
| ! | GTCCTTCATTCTGTATTGGT+GGG | + | tig0013114:88650-88669 | Msa1353260:CDS | 40.0% |
| TTCCCACCAATACAGAATGA+AGG | - | tig0013114:88655-88674 | None:intergenic | 40.0% | |
| ! | TGGGGATTTGGAAGTGCATT+TGG | - | tig0013114:83847-83866 | None:intergenic | 45.0% |
| ! | GGGAAATTTGGAATCTTGGG+TGG | - | tig0013114:83917-83936 | None:intergenic | 45.0% |
| ACAGTAGGCATCTCGTATTC+GGG | - | tig0013114:83937-83956 | None:intergenic | 45.0% | |
| ACGAGATGCCTACTGTTACA+TGG | + | tig0013114:83941-83960 | Msa1353260:CDS | 45.0% | |
| CGAGATGCCTACTGTTACAT+GGG | + | tig0013114:83942-83961 | Msa1353260:CDS | 45.0% | |
| GAGATGCCTACTGTTACATG+GGG | + | tig0013114:83943-83962 | Msa1353260:CDS | 45.0% | |
| ATGACACCCCATGTAACAGT+AGG | - | tig0013114:83952-83971 | None:intergenic | 45.0% | |
| !! | GTTACATGGGGTGTCATTCA+AGG | + | tig0013114:83955-83974 | Msa1353260:CDS | 45.0% |
| GCGAAACGAGTTTCTCTTTG+CGG | - | tig0013114:83981-84000 | None:intergenic | 45.0% | |
| GCAAAGAGAAACTCGTTTCG+CGG | + | tig0013114:83980-83999 | Msa1353260:CDS | 45.0% | |
| CAAAGAGAAACTCGTTTCGC+GGG | + | tig0013114:83981-84000 | Msa1353260:CDS | 45.0% | |
| CTCATGACTTCAACGGTTGA+AGG | - | tig0013114:84072-84091 | None:intergenic | 45.0% | |
| CTTCAACCGTTGAAGTCATG+AGG | + | tig0013114:84070-84089 | Msa1353260:CDS | 45.0% | |
| ACGTTCCCTCATGACTTCAA+CGG | - | tig0013114:84079-84098 | None:intergenic | 45.0% | |
| !!! | TTTGCGAGTTGGGTTTTGGA+GGG | + | tig0013114:84385-84404 | Msa1353260:intron | 45.0% |
| GGAAGGAAAAGCTTATGGAG+AGG | + | tig0013114:84417-84436 | Msa1353260:intron | 45.0% | |
| TAAAGTTCCCCCAAATTCGG+GGG | + | tig0013114:84517-84536 | Msa1353260:intron | 45.0% | |
| CCAACAAGGAAAGGAAATGG+AGG | - | tig0013114:86121-86140 | None:intergenic | 45.0% | |
| CCTCCATTTCCTTTCCTTGT+TGG | + | tig0013114:86118-86137 | Msa1353260:intron | 45.0% | |
| TTAACTCCCAAACAAGGGGA+AGG | + | tig0013114:86145-86164 | Msa1353260:intron | 45.0% | |
| ! | GGAAAACCTTCCCCTTGTTT+GGG | - | tig0013114:86154-86173 | None:intergenic | 45.0% |
| AGGAAAGGAAAGGCTAAGGA+GGG | - | tig0013114:86211-86230 | None:intergenic | 45.0% | |
| AAGGAAAGGAAAGGCTAAGG+AGG | - | tig0013114:86212-86231 | None:intergenic | 45.0% | |
| TTTGAGGGGAAGGAAAGGAA+AGG | - | tig0013114:86221-86240 | None:intergenic | 45.0% | |
| !!! | GGCTTTGTTTGCGAGTTTTG+AGG | - | tig0013114:86237-86256 | None:intergenic | 45.0% |
| !! | GTTTTGGTCAACGCCTTGAA+TGG | + | tig0013114:86462-86481 | Msa1353260:intron | 45.0% |
| TTGGATTATTCCCAGCCTGT+GGG | - | tig0013114:86548-86567 | None:intergenic | 45.0% | |
| GGCTGGGAATAATCCAACAT+TGG | + | tig0013114:86551-86570 | Msa1353260:intron | 45.0% | |
| GAGTTATTCTTTCCTGCTCC+GGG | + | tig0013114:86641-86660 | Msa1353260:intron | 45.0% | |
| ! | CCAAGACAAAGCCTTATCCT+AGG | - | tig0013114:86833-86852 | None:intergenic | 45.0% |
| ! | CCTAGGATAAGGCTTTGTCT+TGG | + | tig0013114:86830-86849 | Msa1353260:intron | 45.0% |
| ! | GAATTTGTCTGAGGCAATCG+AGG | - | tig0013114:86905-86924 | None:intergenic | 45.0% |
| GATGCAAACTCTCCTTGTCA+TGG | - | tig0013114:86930-86949 | None:intergenic | 45.0% | |
| TTAACTCCCAAACAAGGGGA+AGG | + | tig0013114:86145-86164 | Msa1353260:intron | 45.0% | |
| ! | GGAAAACCTTCCCCTTGTTT+GGG | - | tig0013114:86154-86173 | None:intergenic | 45.0% |
| GAAAGGGAGGGAAAGGAAAA+AGG | - | tig0013114:87785-87804 | None:intergenic | 45.0% | |
| AGGAAAGGAAAGGCTTAGGA+GGG | - | tig0013114:87817-87836 | None:intergenic | 45.0% | |
| AAGGAAAGGAAAGGCTTAGG+AGG | - | tig0013114:87818-87837 | None:intergenic | 45.0% | |
| TTTGAGGGGAAGGAAAGGAA+AGG | - | tig0013114:86221-86240 | None:intergenic | 45.0% | |
| TCCTAGGGATATTGGTCCTA+TGG | + | tig0013114:87928-87947 | Msa1353260:intron | 45.0% | |
| ACCATAGGACCAATATCCCT+AGG | - | tig0013114:87932-87951 | None:intergenic | 45.0% | |
| CATCCTAGCTAGAATCCTCT+TGG | - | tig0013114:88038-88057 | None:intergenic | 45.0% | |
| GAGGAAGGAATGTTTGCCTT+CGG | + | tig0013114:88141-88160 | Msa1353260:CDS | 45.0% | |
| GGATACTGAGCAATAACCGA+AGG | - | tig0013114:88160-88179 | None:intergenic | 45.0% | |
| AGAGGCAACCCAATAATCTG+TGG | - | tig0013114:88181-88200 | None:intergenic | 45.0% | |
| TGATGAAGACTAACCACCTG+TGG | - | tig0013114:88292-88311 | None:intergenic | 45.0% | |
| GGTGATCAAGTGTCCTCAAT+TGG | + | tig0013114:88381-88400 | Msa1353260:CDS | 45.0% | |
| GAGACCTGTAAAAGAGCTTG+TGG | + | tig0013114:88462-88481 | Msa1353260:CDS | 45.0% | |
| CTCTTAAGCCTCTGGTATCT+AGG | - | tig0013114:88532-88551 | None:intergenic | 45.0% | |
| ATACCAGAGGCTTAAGAGCA+AGG | + | tig0013114:88534-88553 | Msa1353260:CDS | 45.0% | |
| TACCAGAGGCTTAAGAGCAA+GGG | + | tig0013114:88535-88554 | Msa1353260:CDS | 45.0% | |
| GGTCCTTCATTCTGTATTGG+TGG | + | tig0013114:88649-88668 | Msa1353260:CDS | 45.0% | |
| !! | GTTTGCGAGTTGGGTTTTGG+AGG | + | tig0013114:84384-84403 | Msa1353260:intron | 50.0% |
| !!! | TTGCGAGTTGGGTTTTGGAG+GGG | + | tig0013114:84386-84405 | Msa1353260:intron | 50.0% |
| !!! | AGTTGGGTTTTGGAGGGGAA+GGG | + | tig0013114:84391-84410 | Msa1353260:intron | 50.0% |
| GGAGGGGAAGGAAAAGCTTA+TGG | + | tig0013114:84412-84431 | Msa1353260:intron | 50.0% | |
| CTCAAAACCCCCGAATTTGG+GGG | - | tig0013114:84527-84546 | None:intergenic | 50.0% | |
| CCTCAAAACCCCCGAATTTG+GGG | - | tig0013114:84528-84547 | None:intergenic | 50.0% | |
| CCCTCAAAACCCCCGAATTT+GGG | - | tig0013114:84529-84548 | None:intergenic | 50.0% | |
| !! | CCCAAATTCGGGGGTTTTGA+GGG | + | tig0013114:84526-84545 | Msa1353260:intron | 50.0% |
| !!! | CCAAATTCGGGGGTTTTGAG+GGG | + | tig0013114:84527-84546 | Msa1353260:intron | 50.0% |
| GGGAAAACCTTCCCCTTGTT+TGG | - | tig0013114:86155-86174 | None:intergenic | 50.0% | |
| AGGAAAGGAAAGGGAGGGAA+GGG | - | tig0013114:86186-86205 | None:intergenic | 50.0% | |
| AAGGAAAGGAAAGGGAGGGA+AGG | - | tig0013114:86187-86206 | None:intergenic | 50.0% | |
| AGGAGGGGAAGGAAAGGAAA+GGG | - | tig0013114:86195-86214 | None:intergenic | 50.0% | |
| AAGGAGGGGAAGGAAAGGAA+AGG | - | tig0013114:86196-86215 | None:intergenic | 50.0% | |
| GGAAAGGAAAGGCTAAGGAG+GGG | - | tig0013114:86210-86229 | None:intergenic | 50.0% | |
| GGGAAGGAAAGGAAAGGCTA+AGG | - | tig0013114:86215-86234 | None:intergenic | 50.0% | |
| !!! | CGAGTTTTGAGGGGAAGGAA+AGG | - | tig0013114:86226-86245 | None:intergenic | 50.0% |
| !!! | GTTTGCGAGTTTTGAGGGGA+AGG | - | tig0013114:86231-86250 | None:intergenic | 50.0% |
| ACAACTTTCCAGACCAGTGG+TGG | + | tig0013114:86323-86342 | Msa1353260:intron | 50.0% | |
| GTGGCGATCATGGTAAGATC+TGG | + | tig0013114:86342-86361 | Msa1353260:intron | 50.0% | |
| GTGTTACAAACCCACAGGCT+GGG | + | tig0013114:86535-86554 | Msa1353260:intron | 50.0% | |
| GTTGGATTATTCCCAGCCTG+TGG | - | tig0013114:86549-86568 | None:intergenic | 50.0% | |
| GTCTCCAATCGATGTCTACC+CGG | - | tig0013114:86662-86681 | None:intergenic | 50.0% | |
| TATGACCATGGTGTGGCAGA+TGG | - | tig0013114:86698-86717 | None:intergenic | 50.0% | |
| GGGAAAACCTTCCCCTTGTT+TGG | - | tig0013114:86155-86174 | None:intergenic | 50.0% | |
| GGGAGGGAAAGGAAAAAGGA+GGG | - | tig0013114:87781-87800 | None:intergenic | 50.0% | |
| AGGGAGGGAAAGGAAAAAGG+AGG | - | tig0013114:87782-87801 | None:intergenic | 50.0% | |
| GGAAAGGAAAGGCTTAGGAG+GGG | - | tig0013114:87816-87835 | None:intergenic | 50.0% | |
| GGGAAGGAAAGGAAAGGCTT+AGG | - | tig0013114:87821-87840 | None:intergenic | 50.0% | |
| !!! | CGAGTTTTGAGGGGAAGGAA+AGG | - | tig0013114:86226-86245 | None:intergenic | 50.0% |
| !!! | GTTTGCGAGTTTTGAGGGGA+AGG | - | tig0013114:86231-86250 | None:intergenic | 50.0% |
| ! | TGCCCAAGAGGATTCTAGCT+AGG | + | tig0013114:88032-88051 | Msa1353260:CDS | 50.0% |
| ! | GAGGATTCTAGCTAGGATGC+TGG | + | tig0013114:88039-88058 | Msa1353260:CDS | 50.0% |
| TTGATCCGGAAGGGTTTGCA+AGG | + | tig0013114:88251-88270 | Msa1353260:CDS | 50.0% | |
| TGATCCGGAAGGGTTTGCAA+GGG | + | tig0013114:88252-88271 | Msa1353260:CDS | 50.0% | |
| ATACTAGCCACATCCTGCGA+CGG | - | tig0013114:88361-88380 | None:intergenic | 50.0% | |
| ACCAGAGGCTTAAGAGCAAG+GGG | + | tig0013114:88536-88555 | Msa1353260:CDS | 50.0% | |
| GGTGGGAAATTAGAGCTACC+CGG | + | tig0013114:88667-88686 | Msa1353260:CDS | 50.0% | |
| GTGGGAAATTAGAGCTACCC+GGG | + | tig0013114:88668-88687 | Msa1353260:CDS | 50.0% | |
| !!! | GAGTTGGGTTTTGGAGGGGA+AGG | + | tig0013114:84390-84409 | Msa1353260:intron | 55.0% |
| ! | CCCCAAATTCGGGGGTTTTG+AGG | + | tig0013114:84525-84544 | Msa1353260:intron | 55.0% |
| CCCCTCAAAACCCCCGAATT+TGG | - | tig0013114:84530-84549 | None:intergenic | 55.0% | |
| GAAAGGGAGGGAAGGGAGAA+AGG | - | tig0013114:86179-86198 | None:intergenic | 55.0% | |
| GGGGAAGGAAAGGAAAGGGA+GGG | - | tig0013114:86191-86210 | None:intergenic | 55.0% | |
| AGGGGAAGGAAAGGAAAGGG+AGG | - | tig0013114:86192-86211 | None:intergenic | 55.0% | |
| AGGCTAAGGAGGGGAAGGAA+AGG | - | tig0013114:86201-86220 | None:intergenic | 55.0% | |
| AGGAAAGGCTAAGGAGGGGA+AGG | - | tig0013114:86206-86225 | None:intergenic | 55.0% | |
| CTTACCATGATCGCCACCAC+TGG | - | tig0013114:86339-86358 | None:intergenic | 55.0% | |
| CTGTGGGTTTGTAACACCGC+AGG | - | tig0013114:86532-86551 | None:intergenic | 55.0% | |
| !! | CTGCGGTGTTACAAACCCAC+AGG | + | tig0013114:86530-86549 | Msa1353260:intron | 55.0% |
| ! | GGTGTTACAAACCCACAGGC+TGG | + | tig0013114:86534-86553 | Msa1353260:intron | 55.0% |
| AATCGATGTCTACCCGGAGC+AGG | - | tig0013114:86656-86675 | None:intergenic | 55.0% | |
| TGCTCCGGGTAGACATCGAT+TGG | + | tig0013114:86655-86674 | Msa1353260:intron | 55.0% | |
| CATCACCATCTGCCACACCA+TGG | + | tig0013114:86690-86709 | Msa1353260:intron | 55.0% | |
| !! | CGAAGTGTCAGAAGCATCCC+TGG | - | tig0013114:86799-86818 | None:intergenic | 55.0% |
| AGGGAAGGAAAGGGAGGGAA+AGG | - | tig0013114:87792-87811 | None:intergenic | 55.0% | |
| AGGAGGGGAAGGGAAGGAAA+GGG | - | tig0013114:87801-87820 | None:intergenic | 55.0% | |
| TAGGAGGGGAAGGGAAGGAA+AGG | - | tig0013114:87802-87821 | None:intergenic | 55.0% | |
| GGAAAGGCTTAGGAGGGGAA+GGG | - | tig0013114:87811-87830 | None:intergenic | 55.0% | |
| AGGAAAGGCTTAGGAGGGGA+AGG | - | tig0013114:87812-87831 | None:intergenic | 55.0% | |
| ACCACCCTTGCAAACCCTTC+CGG | - | tig0013114:88259-88278 | None:intergenic | 55.0% | |
| GTCGCAGGATGTGGCTAGTA+TGG | + | tig0013114:88360-88379 | Msa1353260:CDS | 55.0% | |
| ACTCGCAGCGCAACCAATTG+AGG | - | tig0013114:88397-88416 | None:intergenic | 55.0% | |
| TCCCCTTGCTCTTAAGCCTC+TGG | - | tig0013114:88540-88559 | None:intergenic | 55.0% | |
| !!! | TGGGTTTTGGAGGGGAAGGG+AGG | + | tig0013114:84394-84413 | Msa1353260:intron | 60.0% |
| !!! | GGGTTTTGGAGGGGAAGGGA+GGG | + | tig0013114:84395-84414 | Msa1353260:intron | 60.0% |
| !!! | GGTTTTGGAGGGGAAGGGAG+GGG | + | tig0013114:84396-84415 | Msa1353260:intron | 60.0% |
| GGGAGGGAAGGGAGAAAGGA+GGG | - | tig0013114:86175-86194 | None:intergenic | 60.0% | |
| AGGGAGGGAAGGGAGAAAGG+AGG | - | tig0013114:86176-86195 | None:intergenic | 60.0% | |
| CATGATCGCCACCACTGGTC+TGG | - | tig0013114:86334-86353 | None:intergenic | 60.0% | |
| ! | CAGACCAGTGGTGGCGATCA+TGG | + | tig0013114:86332-86351 | Msa1353260:intron | 60.0% |
| GGGGAAGGGAAGGAAAGGGA+GGG | - | tig0013114:87797-87816 | None:intergenic | 60.0% | |
| AGGGGAAGGGAAGGAAAGGG+AGG | - | tig0013114:87798-87817 | None:intergenic | 60.0% | |
| AGGCTTAGGAGGGGAAGGGA+AGG | - | tig0013114:87807-87826 | None:intergenic | 60.0% | |
| TCCGGAAGGGTTTGCAAGGG+TGG | + | tig0013114:88255-88274 | Msa1353260:CDS | 60.0% | |
| GGAAGGGTTTGCAAGGGTGG+TGG | + | tig0013114:88258-88277 | Msa1353260:CDS | 60.0% | |
| !! | GGTGGTGGAGAAGATGCCAC+AGG | + | tig0013114:88273-88292 | Msa1353260:CDS | 60.0% |
| GGTGGAGAAGATGCCACAGG+TGG | + | tig0013114:88276-88295 | Msa1353260:CDS | 60.0% | |
| TGGTAGGGCAATACCGTCGC+AGG | + | tig0013114:88345-88364 | Msa1353260:CDS | 60.0% | |
| GGCAATACCGTCGCAGGATG+TGG | + | tig0013114:88351-88370 | Msa1353260:CDS | 60.0% | |
| TTGGAGGGGAAGGGAGGGGA+AGG | + | tig0013114:84400-84419 | Msa1353260:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0013114 | gene | 83763 | 88762 | 83763 | ID=Msa1353260;Name=Msa1353260 |
| tig0013114 | mRNA | 83763 | 88762 | 83763 | ID=Msa1353260-mRNA-1;Parent=Msa1353260;Name=Msa1353260-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|1|0|0|3|0|428 |
| tig0013114 | exon | 83763 | 84002 | 83763 | ID=Msa1353260-mRNA-1:exon:8573;Parent=Msa1353260-mRNA-1 |
| tig0013114 | exon | 84057 | 84299 | 84057 | ID=Msa1353260-mRNA-1:exon:8574;Parent=Msa1353260-mRNA-1 |
| tig0013114 | exon | 87959 | 88762 | 87959 | ID=Msa1353260-mRNA-1:exon:8575;Parent=Msa1353260-mRNA-1 |
| tig0013114 | CDS | 83763 | 84002 | 83763 | ID=Msa1353260-mRNA-1:cds;Parent=Msa1353260-mRNA-1 |
| tig0013114 | CDS | 84057 | 84299 | 84057 | ID=Msa1353260-mRNA-1:cds;Parent=Msa1353260-mRNA-1 |
| tig0013114 | CDS | 87959 | 88762 | 87959 | ID=Msa1353260-mRNA-1:cds;Parent=Msa1353260-mRNA-1 |
| Gene Sequence |
| Protein sequence |
