AlfalfaGEDB | Msa1353580

M. sativa cultivar zhongmu-4 / Msa1353580

KEGG: K12606|K13754
GO: GO:0000003 GO:0000075 GO:0000077 GO:0000278 GO:0000288 GO:0000289 GO:0000932 GO:0000956 GO:0001932 GO:0001934 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0005102 GO:0005154 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006355 GO:0006357 GO:0006401 GO:0006402 GO:0006417 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006977 GO:0007044 GO:0007049 GO:0007093 GO:0007154 GO:0007165 GO:0007166 GO:0007276 GO:0007283 GO:0007346 GO:0007548 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009966 GO:0009967 GO:0009968 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010562 GO:0010564 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0010646 GO:0010647 GO:0010648 GO:0010948 GO:0016043 GO:0016070 GO:0016071 GO:0017148 GO:0019219 GO:0019220 GO:0019221 GO:0019222 GO:0019439 GO:0019899 GO:0019900 GO:0019904 GO:0019953 GO:0022402 GO:0022414 GO:0022607 GO:0023051 GO:0023052 GO:0023056 GO:0023057 GO:0030014 GO:0030015 GO:0030330 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031401 GO:0031570 GO:0031571 GO:0031581 GO:0032268 GO:0032269 GO:0032270 GO:0032501 GO:0032502 GO:0032504 GO:0032784 GO:0032786 GO:0032968 GO:0032991 GO:0033135 GO:0033138 GO:0033143 GO:0033144 GO:0033146 GO:0033147 GO:0033554 GO:0034097 GO:0034243 GO:0034248 GO:0034249 GO:0034329 GO:0034330 GO:0034641 GO:0034655 GO:0035556 GO:0035770 GO:0036464 GO:0042058 GO:0042221 GO:0042325 GO:0042327 GO:0042770 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0044773 GO:0044774 GO:0044783 GO:0044819 GO:0045742 GO:0045786 GO:0045787 GO:0045893 GO:0045930 GO:0045935 GO:0045937 GO:0045944 GO:0046483 GO:0046700 GO:0046983 GO:0048232 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0048609 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051248 GO:0051252 GO:0051254 GO:0051704 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0070851 GO:0070887 GO:0071156 GO:0071158 GO:0071310 GO:0071345 GO:0071704 GO:0071840 GO:0072331 GO:0072395 GO:0072401 GO:0072413 GO:0072422 GO:0072431 GO:0080090 GO:0090068 GO:0090304 GO:0097159 GO:1901184 GO:1901186 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902400 GO:1902402 GO:1902403 GO:1902680 GO:1902806 GO:1902807 GO:1903047 GO:1903506 GO:1903508 GO:1990904 GO:2000045 GO:2000112 GO:2000113 GO:2000134 GO:2000325 GO:2000327 GO:2001141
PFAM: PF04078.16

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1353580	XP_003598636.1	83.389	301	13	2	1	264	1	301	7.73e-172	486

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1353580	sp\|Q6P819\|CNOT9_XENTR	44.828	261	110	1	40	266	28	288	1.06e-68	217

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1353580	Q2HW81	83.389	301	13	2	1	264	1	301	3.69e-172	486

TFs/TRs:

Gene ID	Type	Classification
Msa1353580	TR	Rcd1-like

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1353580	MtrunA17_Chr7g0224601	53.795	303	99	3	12	273	2	304	7.48e-93	276
Msa1353580	MtrunA17_Chr1g0177151	53.543	254	83	2	1	220	1	253	5.09e-90	268
Msa1353580	MtrunA17_Chr8g0392781	45.797	345	115	4	1	273	1	345	9.71e-89	268
Msa1353580	MtrunA17_Chr3g0099561	51.825	274	97	2	35	273	26	299	3.24e-85	257
Msa1353580	MtrunA17_Chr3g0083811	97.414	116	3	0	149	264	1	116	1.55e-76	228
Msa1353580	MtrunA17_Chr5g0444621	51.429	210	68	1	67	242	52	261	5.37e-63	199
Msa1353580	MtrunA17_Chr6g0477171	52.041	196	60	1	59	220	48	243	1.00e-59	190
Msa1353580	MtrunA17_Chr3g0083821	62.338	77	29	0	51	127	10	86	2.37e-26	100
Msa1353580	MtrunA17_Chr6g0477181	57.627	59	22	1	1	56	1	59	4.63e-12	61.2

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1353580	AT3G20800.1	48.951	286	112	1	22	273	26	311	2.67e-86	260
Msa1353580	AT5G12980.1	45.455	275	115	2	28	267	28	302	9.59e-77	236
Msa1353580	AT2G32550.2	28.980	245	124	5	50	248	67	307	3.20e-21	91.7
Msa1353580	AT2G32550.3	29.060	234	116	5	61	248	39	268	5.32e-21	90.5
Msa1353580	AT2G32550.1	28.241	216	105	5	79	248	2	213	4.13e-16	75.9

Find 44 sgRNAs with CRISPR-Local

Find 240 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AGGAACTTGGACCTTTATTA+TGG	0.221177	tig0013830:-28340	Msa1353580:CDS
CTCGCTTATCTCAAAATTGC+AGG	0.298861	tig0013830:-25492	Msa1353580:intron
AGAAATGAGATCCTTGTATC+AGG	0.301701	tig0013830:+27332	None:intergenic
ATAGAAACCTATGACTTCTT+TGG	0.317203	tig0013830:+25856	None:intergenic
CAATGTTCTTGCACTACTTC+AGG	0.367374	tig0013830:-27562	Msa1353580:intron
TATATTAGACGATGATGGTT+TGG	0.376298	tig0013830:-25635	Msa1353580:CDS
TTGGCATCTTTGAGCCTGTT+TGG	0.379455	tig0013830:+25350	None:intergenic
CCAACAGTATTCCATAATAA+AGG	0.383147	tig0013830:+28329	None:intergenic
GTTAACACCAAAGAAGTCAT+AGG	0.420089	tig0013830:-25863	Msa1353580:CDS
TGTTGTTACATGAGAATGTT+GGG	0.422120	tig0013830:-24863	Msa1353580:CDS
TCAGAGCACCAAGTTATTTG+AGG	0.428345	tig0013830:-28360	Msa1353580:intron
TAACAACTTATCTTCCAAAC+AGG	0.438040	tig0013830:-25364	Msa1353580:CDS
TTCTTTGTTGAGAGCGATTG+AGG	0.439462	tig0013830:+29540	None:intergenic
GATTGTGAGGGAGAGAGATT+CGG	0.440290	tig0013830:+27597	None:intergenic
ATTCTAACACCACTGATCAT+AGG	0.442748	tig0013830:-29488	Msa1353580:CDS
AAAATTATATTAGACGATGA+TGG	0.467412	tig0013830:-25640	Msa1353580:CDS
CACCCTCACCTCGTTTGTTG+AGG	0.472935	tig0013830:-25534	Msa1353580:CDS
TGTTATTGAACTCAGCAATC+CGG	0.481393	tig0013830:-29445	Msa1353580:CDS
ACCAAGTTATTTGAGGAACT+TGG	0.485648	tig0013830:-28353	Msa1353580:CDS
AGATTCGGTGGTGAAAGAGT+AGG	0.488495	tig0013830:+27612	None:intergenic
AACCGAGTTCCTTTAGAAGC+AGG	0.491153	tig0013830:-24837	Msa1353580:CDS
CCTTTATTATGGAATACTGT+TGG	0.492405	tig0013830:-28329	Msa1353580:CDS
CATCCTCTACCTGCTTCTAA+AGG	0.500981	tig0013830:+24828	None:intergenic
GTTCCTTTAGAAGCAGGTAG+AGG	0.520910	tig0013830:-24831	Msa1353580:CDS
TCCAAGTTCCTCAAATAACT+TGG	0.522228	tig0013830:+28352	None:intergenic
TGGCATCTCACCCTGATACA+AGG	0.537570	tig0013830:-27343	Msa1353580:CDS
CTGTTGTTACATGAGAATGT+TGG	0.540471	tig0013830:-24864	Msa1353580:CDS
AGCCTCAACAAACGAGGTGA+GGG	0.559488	tig0013830:+25532	None:intergenic
TGTTTGTCTAATATGCAAAA+CGG	0.565201	tig0013830:-25809	Msa1353580:CDS
ACAAGGATCTCATTTCTCAA+TGG	0.566776	tig0013830:-27326	Msa1353580:CDS
AAGCCTCAACAAACGAGGTG+AGG	0.569309	tig0013830:+25531	None:intergenic
TGCTCTCTATGTGCTCTCCA+AGG	0.584461	tig0013830:-29409	Msa1353580:intron
GAAATGAGATCCTTGTATCA+GGG	0.596244	tig0013830:+27333	None:intergenic
CACACTCGAGTTGATTGTGA+GGG	0.603583	tig0013830:+27585	None:intergenic
TAACACCACTGATCATAGGA+TGG	0.625981	tig0013830:-29484	Msa1353580:CDS
CTCAACAAACGAGGTGAGGG+TGG	0.629401	tig0013830:+25535	None:intergenic
TACCTGCTTCTAAAGGAACT+CGG	0.631809	tig0013830:+24835	None:intergenic
GATTGCTGAGTTCAATAACA+AGG	0.649486	tig0013830:+29448	None:intergenic
ATCAAAAGCCTCAACAAACG+AGG	0.660997	tig0013830:+25526	None:intergenic
GCACACTCGAGTTGATTGTG+AGG	0.665692	tig0013830:+27584	None:intergenic
GTAAGCCATCCTATGATCAG+TGG	0.669763	tig0013830:+29479	None:intergenic
TCAGTGGTGTTAGAATCACC+AGG	0.685443	tig0013830:+29495	None:intergenic
TGTGAGGGAGAGAGATTCGG+TGG	0.689243	tig0013830:+27600	None:intergenic
GTTGTTACATGAGAATGTTG+GGG	0.746517	tig0013830:-24862	Msa1353580:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	TTTTTTATAATTGAATTGAA+AGG	-	tig0013830:25181-25200	Msa1353580:intron	10.0%
!!!	TTTTTATAATTGAATTGAAA+GGG	-	tig0013830:25182-25201	Msa1353580:intron	10.0%
!!	GAAAAATAAAAACATAAATT+TGG	+	tig0013830:26429-26448	None:intergenic	10.0%
!!!	GAATATTTTTTTTTTGTTTA+AGG	-	tig0013830:26657-26676	Msa1353580:intron	10.0%
!!!	CATATATATTTTTTACATTA+AGG	+	tig0013830:26972-26991	None:intergenic	10.0%
!!!	TAATTTTTTTTTGTAGTTTT+TGG	-	tig0013830:27622-27641	Msa1353580:CDS	10.0%
!!!	TTAAAAGATATATATTTTAG+CGG	-	tig0013830:28074-28093	Msa1353580:intron	10.0%
!!	AGTTATAATAAATTAATTGT+CGG	-	tig0013830:28166-28185	Msa1353580:intron	10.0%
!!!	TACAATAATATCTAATTTTA+GGG	+	tig0013830:28220-28239	None:intergenic	10.0%
!!	ATTATATGAAAATTGATATT+AGG	-	tig0013830:28318-28337	Msa1353580:CDS	10.0%
!!	ATATTAAATTATATCATATC+AGG	+	tig0013830:29130-29149	None:intergenic	10.0%
!!	ATTAGTTAATAATAAATCAA+TGG	+	tig0013830:29264-29283	None:intergenic	10.0%
!!!	GAACTTTTATACTAAAATTT+CGG	-	tig0013830:25937-25956	Msa1353580:intron	15.0%
!!	ATAGATTCATAATCTAAAAA+TGG	+	tig0013830:26374-26393	None:intergenic	15.0%
!!	AACTACAAAAAAAAATTACT+GGG	+	tig0013830:27620-27639	None:intergenic	15.0%
!!	AAACTACAAAAAAAAATTAC+TGG	+	tig0013830:27621-27640	None:intergenic	15.0%
!!!	ATATTTCTTTTTGTAGTTTT+TGG	+	tig0013830:27821-27840	None:intergenic	15.0%
!!!	CATACAGTTTTTTTTTTTTT+TGG	+	tig0013830:28037-28056	None:intergenic	15.0%
!!	CAAAAAAAAAAAAAACTGTA+TGG	-	tig0013830:28035-28054	Msa1353580:intron	15.0%
!!	GACAATTAATTTATTATAAC+TGG	+	tig0013830:28167-28186	None:intergenic	15.0%
!!!	CTACAATAATATCTAATTTT+AGG	+	tig0013830:28221-28240	None:intergenic	15.0%
!!	AAAATTGATATTAGGTATTT+GGG	-	tig0013830:28326-28345	Msa1353580:CDS	15.0%
!!	TTAAGATTAAAAGTTTAATC+AGG	+	tig0013830:28979-28998	None:intergenic	15.0%
!!!	TAAACTTTTAATCTTAAAAC+AGG	-	tig0013830:28982-29001	Msa1353580:intron	15.0%
!!!	AAACTTTTAATCTTAAAACA+GGG	-	tig0013830:28983-29002	Msa1353580:intron	15.0%
!!!	TTCATTTTTAATGTCTTTCA+TGG	-	tig0013830:25024-25043	Msa1353580:intron	20.0%
!!!	TCATTTTTAATGTCTTTCAT+GGG	-	tig0013830:25025-25044	Msa1353580:intron	20.0%
!!	TAATTGTTTCGTTATTGAAA+GGG	-	tig0013830:25376-25395	Msa1353580:CDS	20.0%
!!!	AAATTTTTTCAATGGTATTC+CGG	+	tig0013830:25556-25575	None:intergenic	20.0%
!!!	AAGCTTCTAAATTTTTTCAA+TGG	+	tig0013830:25564-25583	None:intergenic	20.0%
!!!	GATAGTGTGATTTTTTTTAA+TGG	-	tig0013830:25643-25662	Msa1353580:CDS	20.0%
!!!	AATCTTGATTTTACCATAAA+TGG	+	tig0013830:25713-25732	None:intergenic	20.0%
!!!	TTACCATGTTTGTTTTATTT+TGG	-	tig0013830:25915-25934	Msa1353580:intron	20.0%
!!!	ATTACATATTATTTTCTAGC+TGG	-	tig0013830:26118-26137	Msa1353580:intron	20.0%
!!!	AATTTAGTTTTTAAACCTCT+AGG	-	tig0013830:26578-26597	Msa1353580:intron	20.0%
!!!	ATTGATTTTCATGTATTTTG+GGG	+	tig0013830:26909-26928	None:intergenic	20.0%
!!!	GATTGATTTTCATGTATTTT+GGG	+	tig0013830:26910-26929	None:intergenic	20.0%
!!!	TGATTGATTTTCATGTATTT+TGG	+	tig0013830:26911-26930	None:intergenic	20.0%
!!!	AATGTTTTTTTTATAGTGTG+TGG	-	tig0013830:27019-27038	Msa1353580:intron	20.0%
!!	TATGGAGATATATAACTATT+TGG	-	tig0013830:27213-27232	Msa1353580:intron	20.0%
!!	AGGAATGGATATAAATATAA+AGG	+	tig0013830:27443-27462	None:intergenic	20.0%
!!!	TTTTGTTTTTGGCTAAAATA+TGG	-	tig0013830:27557-27576	Msa1353580:intron	20.0%
!!!	TCTGCAAAATATTTTGTTTT+TGG	-	tig0013830:27750-27769	Msa1353580:intron	20.0%
!!!	TATTTTGTTTTTGGAAATAG+TGG	-	tig0013830:27759-27778	Msa1353580:intron	20.0%
!!!	TCAAAAACAAAATATTTTGC+AGG	-	tig0013830:27793-27812	Msa1353580:intron	20.0%
!!!	CAAAAACAAAATATTTTGCA+GGG	-	tig0013830:27794-27813	Msa1353580:intron	20.0%
!!	ACTACAAAAAGAAATATTAC+AGG	-	tig0013830:27824-27843	Msa1353580:intron	20.0%
!!	CTACAAAAAGAAATATTACA+GGG	-	tig0013830:27825-27844	Msa1353580:intron	20.0%
!!!	AAATATATTTTCACATTGCA+AGG	+	tig0013830:27900-27919	None:intergenic	20.0%
!!	TTCACACAATAAACTAATTA+AGG	-	tig0013830:27979-27998	Msa1353580:intron	20.0%
!!!	CAATGTTAGTAAAAGTTTTA+AGG	+	tig0013830:28138-28157	None:intergenic	20.0%
!!!	CTTAAAACTTTTACTAACAT+TGG	-	tig0013830:28136-28155	Msa1353580:intron	20.0%
!!!	ATTGTCGGTAAAAATTTTAA+CGG	-	tig0013830:28181-28200	Msa1353580:intron	20.0%
!!	GAAAATTGATATTAGGTATT+TGG	-	tig0013830:28325-28344	Msa1353580:CDS	20.0%
!!	AAAATTATATTAGACGATGA+TGG	-	tig0013830:28742-28761	Msa1353580:intron	20.0%
!!	ATTGAATTCTCTCTTTATAA+AGG	+	tig0013830:29423-29442	None:intergenic	20.0%
!	TTCACAAGTAATACAAATCT+TGG	-	tig0013830:25049-25068	Msa1353580:intron	25.0%
!	ATGAGAACAAAGATGTTATT+AGG	+	tig0013830:25151-25170	None:intergenic	25.0%
!	CTTTCAATAACGAAACAATT+AGG	+	tig0013830:25377-25396	None:intergenic	25.0%
!	CTAATTGTTTCGTTATTGAA+AGG	-	tig0013830:25375-25394	Msa1353580:CDS	25.0%
!!!	CTTTTCAATTTTAATGCATC+TGG	-	tig0013830:25492-25511	Msa1353580:intron	25.0%
!!	ATCAATTTTTGTCGAAAACT+TGG	-	tig0013830:25515-25534	Msa1353580:CDS	25.0%
!!	CTTTACTTTGACTTTAAATG+AGG	+	tig0013830:25595-25614	None:intergenic	25.0%
!	AAAATCACACTATCAAATGT+CGG	+	tig0013830:25637-25656	None:intergenic	25.0%
!	GTTCCAAAATAAAACAAACA+TGG	+	tig0013830:25921-25940	None:intergenic	25.0%
!!!	TACTATTGCAGTATTTTTAC+AGG	-	tig0013830:26076-26095	Msa1353580:intron	25.0%
!	ATATTTGATGAAACACACAA+TGG	-	tig0013830:26282-26301	Msa1353580:intron	25.0%
!	AATTTGGAGAAAGATATACA+TGG	+	tig0013830:26413-26432	None:intergenic	25.0%
!!!	TTATTTTTCCAACTTTTACG+AGG	-	tig0013830:26440-26459	Msa1353580:intron	25.0%
!!	TATTTTTCCAACTTTTACGA+GGG	-	tig0013830:26441-26460	Msa1353580:intron	25.0%
!	ACTTAGAAAATATATGGTGA+TGG	-	tig0013830:26466-26485	Msa1353580:intron	25.0%
!!!	TTAGCTCAAGGATTTTTTTT+AGG	-	tig0013830:26534-26553	Msa1353580:intron	25.0%
!!!	TAGCTCAAGGATTTTTTTTA+GGG	-	tig0013830:26535-26554	Msa1353580:intron	25.0%
!!!	TTGTGCTGTTTTTTTTTTTC+AGG	-	tig0013830:26730-26749	Msa1353580:intron	25.0%
!!!	TTGATTTTCATGTATTTTGG+GGG	+	tig0013830:26908-26927	None:intergenic	25.0%
!	TTATTCTGAATTACAATCCA+AGG	-	tig0013830:27111-27130	Msa1353580:intron	25.0%
!!	GTTCTTTTGTGAAAATACTA+TGG	-	tig0013830:27195-27214	Msa1353580:intron	25.0%
!!!	TGAAAAGTGTTTTGAATAAG+AGG	-	tig0013830:27272-27291	Msa1353580:intron	25.0%
!!!	GAAAAGTGTTTTGAATAAGA+GGG	-	tig0013830:27273-27292	Msa1353580:intron	25.0%
!!!	CTTTCCCATTTTTAACATAA+TGG	+	tig0013830:27348-27367	None:intergenic	25.0%
!	GCTGCATATAATAACAAAAA+AGG	+	tig0013830:27413-27432	None:intergenic	25.0%
!!!	TTAACTTGCTTGTTGTTTTA+AGG	+	tig0013830:27463-27482	None:intergenic	25.0%
!	AAAAACAAAAGTTAGAAGGA+TGG	+	tig0013830:27547-27566	None:intergenic	25.0%
!!!	ATCCTTCTAACTTTTGTTTT+TGG	-	tig0013830:27546-27565	Msa1353580:intron	25.0%
!	TAAGGATTCTCTAAACTTTA+TGG	-	tig0013830:27997-28016	Msa1353580:intron	25.0%
!!!	AAGTTTTAAGGACAGTTATA+AGG	+	tig0013830:28126-28145	None:intergenic	25.0%
!	CAAAACGAAATAAATAAGCA+TGG	+	tig0013830:28480-28499	None:intergenic	25.0%
!!	TGCTTATTTATTTCGTTTTG+TGG	-	tig0013830:28480-28499	Msa1353580:intron	25.0%
!	TGTTTGTCTAATATGCAAAA+CGG	-	tig0013830:28573-28592	Msa1353580:intron	25.0%
!	TTCAACAATTCTTAAGATCA+TGG	+	tig0013830:28930-28949	None:intergenic	25.0%
!	ACGAAAAAAATTGATGAGAT+TGG	+	tig0013830:29054-29073	None:intergenic	25.0%
!	ATATTACAAGACATGCTATT+AGG	-	tig0013830:29180-29199	Msa1353580:intron	25.0%
!	TATTACAAGACATGCTATTA+GGG	-	tig0013830:29181-29200	Msa1353580:intron	25.0%
!	CTAGATATTGTTTCAATTTC+AGG	-	tig0013830:29469-29488	Msa1353580:CDS	25.0%
	AGATAGATATGTAAGAACCT+TGG	+	tig0013830:24993-25012	None:intergenic	30.0%
	ACAAGTAATACAAATCTTGG+AGG	-	tig0013830:25052-25071	Msa1353580:intron	30.0%
	TGTTATTAGGTCTAGCAAAA+GGG	+	tig0013830:25138-25157	None:intergenic	30.0%
	ATGTTATTAGGTCTAGCAAA+AGG	+	tig0013830:25139-25158	None:intergenic	30.0%
!	TCTCCAGAATAATTTGTCTT+TGG	-	tig0013830:25329-25348	Msa1353580:intron	30.0%
	TTCACTGTTTAGTGTATCAT+GGG	-	tig0013830:25399-25418	Msa1353580:intron	30.0%
	TTTGTCGAAAACTTGGTATT+CGG	-	tig0013830:25522-25541	Msa1353580:CDS	30.0%
	CCAACAGTATTCCATAATAA+AGG	+	tig0013830:26056-26075	None:intergenic	30.0%
	CCTTTATTATGGAATACTGT+TGG	-	tig0013830:26053-26072	Msa1353580:intron	30.0%
	ATGAAACACACAATGGTATT+GGG	-	tig0013830:26289-26308	Msa1353580:intron	30.0%
	TGAAATGATGATTGTTCTGA+AGG	+	tig0013830:26351-26370	None:intergenic	30.0%
	AGGGAGACTTAGAAAATATA+TGG	-	tig0013830:26460-26479	Msa1353580:intron	30.0%
	TTGAATAAGAGGGATGAATT+TGG	-	tig0013830:27283-27302	Msa1353580:intron	30.0%
	CAGGCCATTATGTTAAAAAT+GGG	-	tig0013830:27341-27360	Msa1353580:CDS	30.0%
!!!	TTGCTTGTTGTTTTAAGGAA+TGG	+	tig0013830:27458-27477	None:intergenic	30.0%
	TAACACAGTTTGAGAATTTG+AGG	-	tig0013830:27480-27499	Msa1353580:intron	30.0%
	AACACAGTTTGAGAATTTGA+GGG	-	tig0013830:27481-27500	Msa1353580:intron	30.0%
	AGCCAAAAACAAAAGTTAGA+AGG	+	tig0013830:27551-27570	None:intergenic	30.0%
	ACATGATGATTGAACCTATT+CGG	-	tig0013830:27714-27733	Msa1353580:intron	30.0%
!!	AGACTATTTTTCTACCGAAT+AGG	+	tig0013830:27731-27750	None:intergenic	30.0%
!!!	TTTGTTTTTGGAAATAGTGG+AGG	-	tig0013830:27762-27781	Msa1353580:intron	30.0%
!!!	TTGTTTTTGGAAATAGTGGA+GGG	-	tig0013830:27763-27782	Msa1353580:intron	30.0%
	TGAACTAATCCTAACAAGTT+GGG	+	tig0013830:28361-28380	None:intergenic	30.0%
	ATGAACTAATCCTAACAAGT+TGG	+	tig0013830:28362-28381	None:intergenic	30.0%
	TTGTGGTATTTGATATTCAC+AGG	-	tig0013830:28497-28516	Msa1353580:intron	30.0%
	ATAGAAACCTATGACTTCTT+TGG	+	tig0013830:28529-28548	None:intergenic	30.0%
	GATATACAACTTTCATTAGC+AGG	+	tig0013830:28694-28713	None:intergenic	30.0%
	ATTATAAATGTTGCAACCTG+TGG	+	tig0013830:28718-28737	None:intergenic	30.0%
!	TATATTAGACGATGATGGTT+TGG	-	tig0013830:28747-28766	Msa1353580:intron	30.0%
!!!	GCTACAACAGAGAATTTTTT+TGG	-	tig0013830:28781-28800	Msa1353580:intron	30.0%
	TAACAACTTATCTTCCAAAC+AGG	-	tig0013830:29018-29037	Msa1353580:intron	30.0%
	GTATGATACACACATTCAAT+AGG	+	tig0013830:29225-29244	None:intergenic	30.0%
	TGTCACAAAACTTACTAAAG+AGG	+	tig0013830:29314-29333	None:intergenic	30.0%
!!	TAAGTTTTGTGACACAGTTA+TGG	-	tig0013830:29320-29339	Msa1353580:intron	30.0%
!	CAGTTATGGTATTTTCAAAG+TGG	-	tig0013830:29334-29353	Msa1353580:intron	30.0%
	TCAAAGTGGATACTAACTAT+AGG	-	tig0013830:29348-29367	Msa1353580:intron	30.0%
	TGTTGTTACATGAGAATGTT+GGG	-	tig0013830:29519-29538	Msa1353580:CDS	30.0%
	ATTCTAACACCACTGATCAT+AGG	-	tig0013830:24894-24913	Msa1353580:CDS	35.0%
	GATTGCTGAGTTCAATAACA+AGG	+	tig0013830:24937-24956	None:intergenic	35.0%
	TGTTATTGAACTCAGCAATC+CGG	-	tig0013830:24937-24956	Msa1353580:intron	35.0%
!!!	AGAGCATTTTCTCTAAGATC+CGG	+	tig0013830:24959-24978	None:intergenic	35.0%
!	AAAGGGTTTAATGTTGGTAG+AGG	+	tig0013830:25121-25140	None:intergenic	35.0%
	CTAGCAAAAGGGTTTAATGT+TGG	+	tig0013830:25127-25146	None:intergenic	35.0%
	TGTTTACGCTTCACTTCTTA+GGG	-	tig0013830:25220-25239	Msa1353580:intron	35.0%
	GGAAATGAGACCTGATAATT+TGG	-	tig0013830:25242-25261	Msa1353580:intron	35.0%
	TCTGGTAGGTCAATAAAATC+TGG	-	tig0013830:25271-25290	Msa1353580:intron	35.0%
	AGAACCTAGGTTCAATTTCT+GGG	+	tig0013830:25312-25331	None:intergenic	35.0%
!	CAAATTATTCTGGAGAACCT+AGG	+	tig0013830:25325-25344	None:intergenic	35.0%
	CCACCAAAGACAAATTATTC+TGG	+	tig0013830:25335-25354	None:intergenic	35.0%
!	CCAGAATAATTTGTCTTTGG+TGG	-	tig0013830:25332-25351	Msa1353580:CDS	35.0%
	GTTCACTGTTTAGTGTATCA+TGG	-	tig0013830:25398-25417	Msa1353580:intron	35.0%
	AAAACTTGGTATTCGGTCAT+AGG	-	tig0013830:25529-25548	Msa1353580:CDS	35.0%
	GACGACATCTAATCCATTTA+TGG	-	tig0013830:25697-25716	Msa1353580:intron	35.0%
	AATCAAGATTACTATCGCAC+AGG	-	tig0013830:25723-25742	Msa1353580:intron	35.0%
	ACCAAGTTATTTGAGGAACT+TGG	-	tig0013830:26029-26048	Msa1353580:intron	35.0%
	TCCAAGTTCCTCAAATAACT+TGG	+	tig0013830:26033-26052	None:intergenic	35.0%
	AGGAACTTGGACCTTTATTA+TGG	-	tig0013830:26042-26061	Msa1353580:intron	35.0%
	TTGTGCATGTATCTTACTTG+TGG	-	tig0013830:26241-26260	Msa1353580:intron	35.0%
	GATGAAACACACAATGGTAT+TGG	-	tig0013830:26288-26307	Msa1353580:intron	35.0%
	GAAGGATTGTAATACGACAA+AGG	+	tig0013830:26333-26352	None:intergenic	35.0%
	TGGAGAAAGATATACATGGT+AGG	+	tig0013830:26409-26428	None:intergenic	35.0%
	TTTCAAGAGATGTTAGCTCA+AGG	-	tig0013830:26522-26541	Msa1353580:intron	35.0%
	GATTTGAACTTCTTTCCTAG+AGG	+	tig0013830:26596-26615	None:intergenic	35.0%
!!	GGTCATTTTACAGTTGTTTG+AGG	+	tig0013830:26620-26639	None:intergenic	35.0%
	ATTCATAAGAGTCGCACTAA+TGG	+	tig0013830:26641-26660	None:intergenic	35.0%
	GAAATGAGATCCTTGTATCA+GGG	+	tig0013830:27052-27071	None:intergenic	35.0%
	AGAAATGAGATCCTTGTATC+AGG	+	tig0013830:27053-27072	None:intergenic	35.0%
	ACAAGGATCTCATTTCTCAA+TGG	-	tig0013830:27056-27075	Msa1353580:intron	35.0%
!!	CAACTTGTTACATACAACCT+TGG	+	tig0013830:27131-27150	None:intergenic	35.0%
	AAGTTATTGCAACCAAAAGC+TGG	+	tig0013830:27320-27339	None:intergenic	35.0%
!!	TTTTGGTTGCAATAACTTGC+AGG	-	tig0013830:27322-27341	Msa1353580:CDS	35.0%
	GCAGGCCATTATGTTAAAAA+TGG	-	tig0013830:27340-27359	Msa1353580:CDS	35.0%
	CAAAACGAGGCATATTTACA+GGG	+	tig0013830:27590-27609	None:intergenic	35.0%
	ACAAAACGAGGCATATTTAC+AGG	+	tig0013830:27591-27610	None:intergenic	35.0%
!!!	AATATGCCTCGTTTTGGTTT+TGG	-	tig0013830:27653-27672	Msa1353580:intron	35.0%
	GTGCAAATCATCACAAAAGT+GGG	+	tig0013830:27687-27706	None:intergenic	35.0%
	TGTGCAAATCATCACAAAAG+TGG	+	tig0013830:27688-27707	None:intergenic	35.0%
!	TCTGCAAATATGTCTCGTTT+TGG	+	tig0013830:27858-27877	None:intergenic	35.0%
	CACATTGCAAGGCTAAAATA+TGG	+	tig0013830:27889-27908	None:intergenic	35.0%
	AGGACAGTTATAAGGAATGT+TGG	+	tig0013830:28118-28137	None:intergenic	35.0%
!	ACTTACAAACCCAACTTGTT+AGG	-	tig0013830:28349-28368	Msa1353580:CDS	35.0%
	TTAGTTCATCTACATCACGA+AGG	-	tig0013830:28373-28392	Msa1353580:intron	35.0%
	TAGTTCATCTACATCACGAA+GGG	-	tig0013830:28374-28393	Msa1353580:intron	35.0%
	GTTAACACCAAAGAAGTCAT+AGG	-	tig0013830:28519-28538	Msa1353580:intron	35.0%
!!	GCAGGTATTGGTAACAAAAA+TGG	+	tig0013830:28676-28695	None:intergenic	35.0%
	CAACTTTCATTAGCAGGTAT+TGG	+	tig0013830:28688-28707	None:intergenic	35.0%
	TGAAAGTTGTATATCTCCAC+AGG	-	tig0013830:28699-28718	Msa1353580:intron	35.0%
!!!	TCGAGTTTTGAACATGATGT+TGG	-	tig0013830:28810-28829	Msa1353580:intron	35.0%
	CTTATCTCAAAATTGCAGGT+TGG	-	tig0013830:28894-28913	Msa1353580:intron	35.0%
	AGGATGATCCAAAAACTATG+AGG	-	tig0013830:29489-29508	Msa1353580:CDS	35.0%
	TGATCCAAAAACTATGAGGT+TGG	-	tig0013830:29493-29512	Msa1353580:CDS	35.0%
!	AGTACCAACCTCATAGTTTT+TGG	+	tig0013830:29500-29519	None:intergenic	35.0%
	CTGTTGTTACATGAGAATGT+TGG	-	tig0013830:29518-29537	Msa1353580:CDS	35.0%
	GTTGTTACATGAGAATGTTG+GGG	-	tig0013830:29520-29539	Msa1353580:CDS	35.0%
	TTCTTTGTTGAGAGCGATTG+AGG	+	tig0013830:24845-24864	None:intergenic	40.0%
!	GCATCGTTTATAGCTTTTCC+TGG	-	tig0013830:24869-24888	Msa1353580:CDS	40.0%
	TAACACCACTGATCATAGGA+TGG	-	tig0013830:24898-24917	Msa1353580:intron	40.0%
	GTGTTTACGCTTCACTTCTT+AGG	-	tig0013830:25219-25238	Msa1353580:intron	40.0%
	GTTTACGCTTCACTTCTTAG+GGG	-	tig0013830:25221-25240	Msa1353580:intron	40.0%
	CAGACGAACTCCAAATTATC+AGG	+	tig0013830:25255-25274	None:intergenic	40.0%
!	CTGATAATTTGGAGTTCGTC+TGG	-	tig0013830:25253-25272	Msa1353580:intron	40.0%
!	TAATTTGGAGTTCGTCTGGT+AGG	-	tig0013830:25257-25276	Msa1353580:intron	40.0%
	GAGAACCTAGGTTCAATTTC+TGG	+	tig0013830:25313-25332	None:intergenic	40.0%
!	ACGAAACAATTAGGCTCTAG+TGG	+	tig0013830:25368-25387	None:intergenic	40.0%
	ATCACACTATCAAATGTCGG+TGG	+	tig0013830:25634-25653	None:intergenic	40.0%
!	TCAGAGCACCAAGTTATTTG+AGG	-	tig0013830:26022-26041	Msa1353580:intron	40.0%
	TAAGTCTCCCTCGTAAAAGT+TGG	+	tig0013830:26451-26470	None:intergenic	40.0%
	CAATGTTCTTGCACTACTTC+AGG	-	tig0013830:26820-26839	Msa1353580:intron	40.0%
!	GATTCTCTATGACCAGCTTT+TGG	-	tig0013830:27305-27324	Msa1353580:intron	40.0%
!	AATTTGAGGGTTGCTAGTCT+TGG	-	tig0013830:27494-27513	Msa1353580:intron	40.0%
	ACTGGGACTAAAACAAAACG+AGG	+	tig0013830:27603-27622	None:intergenic	40.0%
	CAAAACGAGGCATATTTGCA+GGG	+	tig0013830:27649-27668	None:intergenic	40.0%
!	TTTGTGATGATTTGCACACG+TGG	-	tig0013830:27690-27709	Msa1353580:intron	40.0%
	ATCAAAAGCCTCAACAAACG+AGG	+	tig0013830:28859-28878	None:intergenic	40.0%
	CTCGCTTATCTCAAAATTGC+AGG	-	tig0013830:28890-28909	Msa1353580:intron	40.0%
	TACAAGACATGCTATTAGGG+TGG	-	tig0013830:29184-29203	Msa1353580:intron	40.0%
!	ATGCTATTAGGGTGGCTTTT+AGG	-	tig0013830:29192-29211	Msa1353580:intron	40.0%
!	TACCTGCTTCTAAAGGAACT+CGG	+	tig0013830:29550-29569	None:intergenic	40.0%
!	TCAGTGGTGTTAGAATCACC+AGG	+	tig0013830:24890-24909	None:intergenic	45.0%
	GTAAGCCATCCTATGATCAG+TGG	+	tig0013830:24906-24925	None:intergenic	45.0%
	TCCACCCAGAAATTGAACCT+AGG	-	tig0013830:25305-25324	Msa1353580:intron	45.0%
!	ACCTAGGTTCAATTTCTGGG+TGG	+	tig0013830:25309-25328	None:intergenic	45.0%
	TTGGTATTCGGTCATAGGAC+CGG	-	tig0013830:25534-25553	Msa1353580:CDS	45.0%
!!	AGATTCGGTGGTGAAAGAGT+AGG	+	tig0013830:26773-26792	None:intergenic	45.0%
	GATTGTGAGGGAGAGAGATT+CGG	+	tig0013830:26788-26807	None:intergenic	45.0%
!!	CACACTCGAGTTGATTGTGA+GGG	+	tig0013830:26800-26819	None:intergenic	45.0%
!!	GTTGCTAGTCTTGGAGTCAT+TGG	-	tig0013830:27503-27522	Msa1353580:intron	45.0%
	CCAAAACGAGGCATATTTGC+AGG	+	tig0013830:27650-27669	None:intergenic	45.0%
!	CCTGCAAATATGCCTCGTTT+TGG	-	tig0013830:27647-27666	Msa1353580:intron	45.0%
	CAAGGACCAAAACCAAAACG+AGG	+	tig0013830:27662-27681	None:intergenic	45.0%
!!!	CTCGTTTTGGTTTTGGTCCT+TGG	-	tig0013830:27660-27679	Msa1353580:intron	45.0%
	TCATCACAAAAGTGGGACCA+AGG	+	tig0013830:27680-27699	None:intergenic	45.0%
	TTGGCATCTTTGAGCCTGTT+TGG	+	tig0013830:29035-29054	None:intergenic	45.0%
!	AACCGAGTTCCTTTAGAAGC+AGG	-	tig0013830:29545-29564	Msa1353580:CDS	45.0%
!	GTTCCTTTAGAAGCAGGTAG+AGG	-	tig0013830:29551-29570	Msa1353580:CDS	45.0%
	CATCCTCTACCTGCTTCTAA+AGG	+	tig0013830:29557-29576	None:intergenic	45.0%
	TGCTCTCTATGTGCTCTCCA+AGG	-	tig0013830:24973-24992	Msa1353580:intron	50.0%
!!	GCACACTCGAGTTGATTGTG+AGG	+	tig0013830:26801-26820	None:intergenic	50.0%
	TGGCATCTCACCCTGATACA+AGG	-	tig0013830:27039-27058	Msa1353580:intron	50.0%
!!	GCTAGTCTTGGAGTCATTGG+TGG	-	tig0013830:27506-27525	Msa1353580:intron	50.0%
!	AGTCATTGGTGGCTCGATGA+AGG	-	tig0013830:27517-27536	Msa1353580:intron	50.0%
	AGCCTCAACAAACGAGGTGA+GGG	+	tig0013830:28853-28872	None:intergenic	50.0%
	AAGCCTCAACAAACGAGGTG+AGG	+	tig0013830:28854-28873	None:intergenic	50.0%
	TGTGAGGGAGAGAGATTCGG+TGG	+	tig0013830:26785-26804	None:intergenic	55.0%
	CTCAACAAACGAGGTGAGGG+TGG	+	tig0013830:28850-28869	None:intergenic	55.0%
!	CACCCTCACCTCGTTTGTTG+AGG	-	tig0013830:28848-28867	Msa1353580:intron	55.0%

Chromosome	Type	Strat	End	Strand	Name
tig0013830	gene	24827	29577	24827	ID=Msa1353580;Name=Msa1353580
tig0013830	mRNA	24827	29577	24827	ID=Msa1353580-mRNA-1;Parent=Msa1353580;Name=Msa1353580-mRNA-1;_AED=0.24;_eAED=0.25;_QI=0\|0\|0\|0.87\|0.85\|0.87\|8\|0\|273
tig0013830	exon	29410	29577	29410	ID=Msa1353580-mRNA-1:exon:8742;Parent=Msa1353580-mRNA-1
tig0013830	exon	28307	28378	28307	ID=Msa1353580-mRNA-1:exon:8741;Parent=Msa1353580-mRNA-1
tig0013830	exon	27563	27652	27563	ID=Msa1353580-mRNA-1:exon:8740;Parent=Msa1353580-mRNA-1
tig0013830	exon	27322	27369	27322	ID=Msa1353580-mRNA-1:exon:8739;Parent=Msa1353580-mRNA-1
tig0013830	exon	25790	25885	25790	ID=Msa1353580-mRNA-1:exon:8738;Parent=Msa1353580-mRNA-1
tig0013830	exon	25493	25683	25493	ID=Msa1353580-mRNA-1:exon:8737;Parent=Msa1353580-mRNA-1
tig0013830	exon	25331	25400	25331	ID=Msa1353580-mRNA-1:exon:8736;Parent=Msa1353580-mRNA-1
tig0013830	exon	24827	24913	24827	ID=Msa1353580-mRNA-1:exon:8735;Parent=Msa1353580-mRNA-1
tig0013830	CDS	29410	29577	29410	ID=Msa1353580-mRNA-1:cds;Parent=Msa1353580-mRNA-1
tig0013830	CDS	28307	28378	28307	ID=Msa1353580-mRNA-1:cds;Parent=Msa1353580-mRNA-1
tig0013830	CDS	27563	27652	27563	ID=Msa1353580-mRNA-1:cds;Parent=Msa1353580-mRNA-1
tig0013830	CDS	27322	27369	27322	ID=Msa1353580-mRNA-1:cds;Parent=Msa1353580-mRNA-1
tig0013830	CDS	25790	25885	25790	ID=Msa1353580-mRNA-1:cds;Parent=Msa1353580-mRNA-1
tig0013830	CDS	25493	25683	25493	ID=Msa1353580-mRNA-1:cds;Parent=Msa1353580-mRNA-1
tig0013830	CDS	25331	25400	25331	ID=Msa1353580-mRNA-1:cds;Parent=Msa1353580-mRNA-1
tig0013830	CDS	24827	24913	24827	ID=Msa1353580-mRNA-1:cds;Parent=Msa1353580-mRNA-1

Gene Sequence

>Msa1353580

ATGGCACACTTTACTCCTCAATCGCTCTCAACAAAGAACAATGCATCGTTTATAGCTTTTCCTGGTGATTCTAACACCACTGATCATAGGATGGCTTACATGCAAAGCCTTGTTATTGAACTCAGCAATCCGGATCTTAGAGAAAATGCTCTCTATGTGCTCTCCAAGAGCACCAAGTTATTTGAGGAACTTGGACCTTTATTATGGAATACTGTTGGTACTATTGCAGTATTTTTACAGGAAATACTTTCAATATATCCTACTCTTTCACCACCGAATCTCTCTCCCTCACAATCAACTCGAGTGTGCAATGTTCTTGCACTACTTCAGTGTGTGGCATCTCACCCTGATACAAGGATCTCATTTCTCAATGGTAATGTTAACACCAAAGAAGTCATAGGTTTCTATCTCTCAAGTGAGATAATTTCACTATGTTTGTCTAATATGCAAAACGGCAATGAATTGACAAAAAATGTTGCAACATTTATAATTCTGAAAATTATATTAGACGATGATGGTTTGGCTCGTGTTTGTGCTACAACAGAGAATTTTTTTGGAGTATGTCGAGTTTTGAACATGATGTTGGAAGATCTTGAGAATCCACCCTCACCTCGTTTGTTGAGGCTTTTGATTTCATGTTATTCTCGCTTATCTCAAAATTGCAGGGCTAGAGTTGCATTAACAACTTATCTTCCAAACAGGCTCAAAGATGCCAATCTCATCAATTTTTTTCGTGATGATCCAAAAACTATGAGGTTGGTACTGTTGTTACATGAGAATGTTGGGGTGAACCGAGTTCCTTTAGAAGCAGGTAGAGGATGA

Protein sequence

>Msa1353580

MAHFTPQSLSTKNNASFIAFPGDSNTTDHRMAYMQSLVIELSNPDLRENALYVLSKSTKLFEELGPLLWNTVGTIAVFLQEILSIYPTLSPPNLSPSQSTRVCNVLALLQCVASHPDTRISFLNGNVNTKEVIGFYLSSEIISLCLSNMQNGNELTKNVATFIILKIILDDDGLARVCATTENFFGVCRVLNMMLEDLENPPSPRLLRLLISCYSRLSQNCRARVALTTYLPNRLKDANLINFFRDDPKTMRLVLLLHENVGVNRVPLEAGRG*