AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1353620

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1353620 MtrunA17_Chr2g0290241 94.145 427 25 0 170 596 1 427 0.0 851
Msa1353620 MtrunA17_Chr4g0076091 55.132 604 202 8 1 595 1 544 0.0 622
Msa1353620 MtrunA17_Chr5g0447691 47.769 605 244 13 1 594 1 544 0.0 530
Msa1353620 MtrunA17_Chr3g0101141 54.588 425 189 3 173 594 119 542 4.79e-170 494
Msa1353620 MtrunA17_Chr5g0445331 56.959 388 162 3 211 594 146 532 6.72e-160 468
Msa1353620 MtrunA17_Chr2g0319091 54.712 382 166 2 215 593 201 578 4.87e-148 439
Msa1353620 MtrunA17_Chr1g0159461 47.170 371 195 1 224 594 223 592 3.79e-127 386
Msa1353620 MtrunA17_Chr3g0125811 47.170 371 195 1 224 594 201 570 3.47e-123 375
Msa1353620 MtrunA17_Chr7g0224271 34.343 396 223 6 221 595 295 674 1.37e-70 240
Msa1353620 MtrunA17_Chr4g0031721 32.540 378 245 3 221 593 311 683 1.11e-64 224
Msa1353620 MtrunA17_Chr4g0031711 30.688 378 256 4 221 593 356 732 1.18e-62 220
Msa1353620 MtrunA17_Chr4g0031741 32.540 378 243 6 221 593 279 649 5.30e-62 216
Msa1353620 MtrunA17_Chr7g0238891 30.133 375 260 2 221 594 367 740 3.93e-61 216
Msa1353620 MtrunA17_Chr2g0328381 31.117 376 251 4 221 593 270 640 1.20e-60 213
Msa1353620 MtrunA17_Chr2g0328341 32.361 377 245 6 221 593 267 637 8.15e-60 210
Msa1353620 MtrunA17_Chr6g0468561 33.333 393 217 9 224 594 293 662 1.10e-58 207
Msa1353620 MtrunA17_Chr7g0236851 33.511 376 233 6 224 593 292 656 1.31e-58 207
Msa1353620 MtrunA17_Chr2g0306641 29.713 488 305 14 124 595 23 488 1.43e-58 204
Msa1353620 MtrunA17_Chr8g0376381 32.041 387 237 11 214 594 156 522 8.70e-58 202
Msa1353620 MtrunA17_Chr2g0328411 29.708 377 260 4 218 593 281 653 9.63e-57 202
Msa1353620 MtrunA17_Chr2g0328431 30.933 375 252 6 221 593 284 653 1.51e-56 201
Msa1353620 MtrunA17_Chr4g0031701 29.211 380 255 5 221 591 249 623 2.83e-56 200
Msa1353620 MtrunA17_Chr2g0328391 29.894 378 257 5 221 593 294 668 5.18e-56 200
Msa1353620 MtrunA17_Chr4g0031731 28.947 380 256 5 221 591 249 623 9.74e-55 196
Msa1353620 MtrunA17_Chr3g0110971 31.298 393 228 11 223 594 216 587 3.02e-54 194
Msa1353620 MtrunA17_Chr4g0057891 32.391 389 238 8 221 595 144 521 2.50e-53 190
Msa1353620 MtrunA17_Chr2g0328401 30.028 353 242 3 221 572 285 633 4.95e-52 189
Msa1353620 MtrunA17_Chr7g0245601 32.425 367 232 7 229 594 441 792 1.56e-51 189
Msa1353620 MtrunA17_Chr8g0357601 30.026 383 252 6 221 594 177 552 3.06e-48 177
Msa1353620 MtrunA17_Chr3g0085681 27.231 437 236 10 217 594 23 436 5.80e-48 173
Msa1353620 MtrunA17_Chr4g0057291 31.461 356 223 9 250 593 315 661 7.06e-45 169
Msa1353620 MtrunA17_Chr2g0328361 29.178 377 232 7 221 593 269 614 7.18e-45 168
Msa1353620 MtrunA17_Chr5g0401131 29.282 362 233 8 249 594 136 490 5.81e-44 163
Msa1353620 MtrunA17_Chr4g0039661 31.445 353 221 10 250 594 216 555 4.19e-41 157
Msa1353620 MtrunA17_Chr4g0038761 30.194 361 228 10 243 594 97 442 5.18e-41 154
Msa1353620 MtrunA17_Chr2g0328371 32.000 250 165 2 297 545 1 246 6.68e-41 149
Msa1353620 MtrunA17_Chr1g0200401 30.688 378 208 14 250 594 103 459 3.47e-40 152
Msa1353620 MtrunA17_Chr3g0085361 27.353 340 191 5 304 594 18 350 8.53e-38 143
Msa1353620 MtrunA17_Chr2g0294461 26.357 387 266 8 221 594 205 585 3.06e-37 146
Msa1353620 MtrunA17_Chr3g0114841 27.778 360 225 10 258 595 155 501 4.03e-36 142
Msa1353620 MtrunA17_Chr2g0294471 25.714 385 268 9 221 594 199 576 3.17e-35 140
Msa1353620 MtrunA17_Chr1g0183641 28.994 338 218 9 262 595 159 478 2.39e-34 136
Msa1353620 MtrunA17_Chr7g0270031 27.089 347 237 8 255 594 217 554 4.80e-33 133
Msa1353620 MtrunA17_Chr5g0424131 27.654 358 233 12 255 595 152 500 6.77e-33 132
Msa1353620 MtrunA17_Chr2g0329591 27.062 388 252 9 227 594 75 451 1.90e-32 130
Msa1353620 MtrunA17_Chr4g0012071 25.858 379 252 11 225 595 195 552 9.50e-29 120
Msa1353620 MtrunA17_Chr1g0194621 25.429 350 238 8 258 594 179 518 2.23e-28 119
Msa1353620 MtrunA17_Chr5g0401421 26.168 321 201 6 307 593 127 445 5.22e-28 117
Msa1353620 MtrunA17_Chr4g0053901 24.940 417 262 9 223 593 56 467 8.00e-28 117
Msa1353620 MtrunA17_Chr5g0396491 31.050 219 138 5 227 440 57 267 1.13e-25 110
Msa1353620 MtrunA17_Chr5g0396491 35.915 142 90 1 455 595 338 479 5.32e-23 102
Msa1353620 MtrunA17_Chr8g0383981 27.606 355 215 16 254 593 168 495 1.43e-25 110
Msa1353620 MtrunA17_Chr7g0230731 25.066 379 256 10 225 595 371 729 2.16e-24 108
Msa1353620 MtrunA17_Chr7g0230771 25.330 379 255 11 225 595 374 732 5.40e-24 107
Msa1353620 MtrunA17_Chr4g0038851 39.007 141 85 1 455 594 329 469 5.65e-24 105
Msa1353620 MtrunA17_Chr4g0038851 29.952 207 137 3 227 432 49 248 3.97e-23 102
Msa1353620 MtrunA17_Chr8g0344101 24.938 401 249 15 225 594 221 600 8.96e-23 102
Msa1353620 MtrunA17_Chr2g0323111 26.857 175 126 2 420 593 132 305 1.66e-16 80.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1353620 AT4G17230.1 47.333 600 235 10 1 594 1 525 6.92e-180 519
Msa1353620 AT4G17230.2 47.333 600 235 10 1 594 1 525 6.92e-180 519
Msa1353620 AT5G48150.1 55.349 430 187 4 167 594 64 490 1.83e-167 486
Msa1353620 AT5G48150.4 55.349 430 187 4 167 594 64 490 1.83e-167 486
Msa1353620 AT5G48150.2 55.349 430 187 4 167 594 64 490 1.83e-167 486
Msa1353620 AT5G48150.3 55.349 430 187 4 167 594 64 490 1.83e-167 486
Msa1353620 AT1G50600.3 52.349 447 202 5 150 594 89 526 2.71e-160 469
Msa1353620 AT2G04890.1 57.662 385 155 2 210 594 37 413 8.97e-160 463
Msa1353620 AT1G50600.1 52.349 447 202 5 150 594 160 597 1.20e-159 470
Msa1353620 AT1G50600.2 54.028 422 189 3 174 594 184 601 1.37e-159 470
Msa1353620 AT1G21450.1 45.263 380 206 2 216 594 215 593 5.15e-120 368
Msa1353620 AT1G07530.1 31.746 378 247 4 222 593 392 764 4.56e-62 219
Msa1353620 AT3G03450.1 33.245 376 237 9 223 594 180 545 2.79e-61 213
Msa1353620 AT5G59450.1 30.423 378 258 4 221 594 222 598 1.33e-59 209
Msa1353620 AT5G52510.1 33.908 348 205 7 262 594 303 640 1.57e-59 210
Msa1353620 AT5G17490.1 30.303 495 303 16 124 594 40 516 3.80e-59 206
Msa1353620 AT3G46600.2 30.563 373 256 3 223 594 1 371 3.47e-58 199
Msa1353620 AT3G46600.1 30.667 375 257 3 221 594 207 579 4.14e-58 205
Msa1353620 AT3G46600.3 30.667 375 257 3 221 594 175 547 4.55e-58 204
Msa1353620 AT2G37650.2 30.871 379 250 4 221 594 330 701 6.77e-58 206
Msa1353620 AT2G37650.1 30.871 379 250 4 221 594 342 713 7.29e-58 207
Msa1353620 AT1G14920.1 31.593 383 229 10 223 594 169 529 1.52e-57 202
Msa1353620 AT2G29060.2 30.789 380 250 6 222 593 280 654 2.77e-57 204
Msa1353620 AT2G29060.1 30.789 380 250 6 222 593 317 691 4.12e-57 204
Msa1353620 AT2G01570.1 31.414 382 231 11 223 594 221 581 8.06e-55 196
Msa1353620 AT1G50420.1 28.837 430 238 8 227 595 58 480 1.29e-54 193
Msa1353620 AT1G66350.1 31.579 380 229 12 223 595 152 507 1.52e-54 193
Msa1353620 AT2G29065.1 30.366 382 256 7 221 593 247 627 1.70e-53 193
Msa1353620 AT1G07520.2 29.659 381 259 6 221 593 149 528 7.38e-52 186
Msa1353620 AT1G07520.4 29.659 381 259 6 221 593 149 528 7.38e-52 186
Msa1353620 AT1G07520.1 29.659 381 259 6 221 593 313 692 3.58e-51 187
Msa1353620 AT1G07520.3 29.659 381 259 6 221 593 314 693 3.88e-51 187
Msa1353620 AT3G54220.1 31.165 369 235 8 229 593 296 649 1.37e-46 174
Msa1353620 AT5G66770.1 33.811 349 213 7 254 594 246 584 1.51e-45 170
Msa1353620 AT3G50650.1 32.286 350 219 7 254 594 202 542 2.50e-44 166
Msa1353620 AT1G63100.1 28.535 389 249 7 226 593 248 628 5.64e-42 160
Msa1353620 AT1G63100.2 28.535 389 249 7 226 593 273 653 5.81e-42 161
Msa1353620 AT4G37650.1 29.820 389 246 10 227 594 147 529 1.10e-41 158
Msa1353620 AT5G41920.1 28.000 375 245 9 227 594 44 400 2.08e-40 152
Msa1353620 AT1G55580.1 26.129 310 197 7 304 594 149 445 1.45e-30 125
Msa1353620 AT4G08250.1 25.926 351 247 7 250 593 132 476 3.43e-29 121
Msa1353620 AT3G49950.1 23.967 363 251 10 249 593 52 407 2.35e-24 106
Msa1353620 AT3G60630.1 24.716 352 230 10 260 595 291 623 1.29e-22 102
Msa1353620 AT2G45160.1 25.978 358 215 13 259 595 312 640 2.81e-21 98.6
Msa1353620 AT4G00150.1 23.873 377 257 11 223 595 205 555 9.32e-20 93.6
Msa1353620 AT3G13840.1 23.464 358 245 10 249 594 170 510 2.37e-19 92.0
Msa1353620 AT4G36710.1 23.969 388 259 12 221 594 120 485 7.43e-18 87.0
Msa1353620 AT5G67411.1 29.101 189 121 5 352 531 14 198 2.12e-12 67.0

Find 111 sgRNAs with CRISPR-Local

Find 246 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGTAAGCAAATTGAAAATA+TGG 0.174043 tig0013888:-1561 Msa1353620:intergenic
AAGATTTCAATAAAGATTAT+AGG 0.216624 tig0013888:+2324 Msa1353620:CDS
TCAAAGAACCAATGTTTCTT+TGG 0.242227 tig0013888:+771 Msa1353620:CDS
TGAGAAAATTGTGGTGAAAA+AGG 0.281191 tig0013888:-910 Msa1353620:intergenic
GACATGAACTGTTTGGAAAA+TGG 0.289537 tig0013888:+2222 Msa1353620:CDS
AAAGCTCAATTTCTTTCATT+TGG 0.293718 tig0013888:-1014 Msa1353620:intergenic
CCTCCGTTCGTTCGTGTAAC+AGG 0.298231 tig0013888:+1711 Msa1353620:CDS
ACTGTGATCCTTGTGCAATT+TGG 0.334053 tig0013888:-1647 Msa1353620:intergenic
GATTTCAGAGCTGGGCTATA+AGG 0.338435 tig0013888:+1146 Msa1353620:CDS
CTCATCAACTCATTGCTTGT+TGG 0.342988 tig0013888:-1510 Msa1353620:intergenic
TTGCAAATCAATTCAAATAA+TGG 0.345919 tig0013888:+739 Msa1353620:CDS
GCTGTCGATGATATCTGAAT+TGG 0.360875 tig0013888:-1193 Msa1353620:intergenic
TTAACACTATTGAACTCAAA+TGG 0.361949 tig0013888:-1825 Msa1353620:intergenic
TAAGCACCTAACCTTTGAAT+TGG 0.365266 tig0013888:-1414 Msa1353620:intergenic
TCTTCTTTCAAGTCTAGCTT+TGG 0.368681 tig0013888:-1291 Msa1353620:intergenic
GTTGAAAGACATGAACTGTT+TGG 0.373187 tig0013888:+2215 Msa1353620:CDS
AATTTGAGACCAATCATATT+CGG 0.388708 tig0013888:-1256 Msa1353620:intergenic
TGTGCACAGTTTGTATTTGA+TGG 0.403494 tig0013888:+1324 Msa1353620:CDS
TTTCTTTGGAAACAAGCAAC+TGG 0.406710 tig0013888:+785 Msa1353620:CDS
GAAAGAAATTGAGCTTTCAT+TGG 0.409492 tig0013888:+1020 Msa1353620:CDS
TTCAATAGTGTTAAAATGTA+TGG 0.409922 tig0013888:+1834 Msa1353620:CDS
TGAATTAATGATTTCAGAGC+TGG 0.411720 tig0013888:+1137 Msa1353620:CDS
TCTGTCTCAAAGACTGTTGC+TGG 0.413091 tig0013888:-687 Msa1353620:intergenic
GAATCGGAGATTTCATTGTT+AGG 0.417405 tig0013888:+1168 Msa1353620:CDS
GTATGGATGTGAGGTTCAAC+TGG 0.437985 tig0013888:+1851 Msa1353620:CDS
ATCAAAAGCTATGAATTCAT+TGG 0.443080 tig0013888:-845 Msa1353620:intergenic
AGCTGCCAGTCCAACTTAAA+CGG 0.448434 tig0013888:+1213 Msa1353620:CDS
GCCTAAGGTCGTGTTATTTG+TGG 0.450027 tig0013888:+2004 Msa1353620:CDS
AGAGCAAGGGTGGAATCATC+GGG 0.455587 tig0013888:+1453 Msa1353620:CDS
GGTTCTCCAATTCAAAGGTT+AGG 0.459338 tig0013888:+1408 Msa1353620:CDS
TGTAAGCAAATTGAAAATAT+GGG 0.460197 tig0013888:-1560 Msa1353620:intergenic
GAAATTGAGCTTTCATTGGT+AGG 0.460607 tig0013888:+1024 Msa1353620:CDS
GGTGGAAGACTTGATATTGT+AGG 0.469286 tig0013888:+1765 Msa1353620:CDS
GGTCGTGTTATTTGTGGAGC+AGG 0.469342 tig0013888:+2010 Msa1353620:CDS
GGTACCGATATAGAAGTATT+CGG 0.469425 tig0013888:+1045 Msa1353620:CDS
TGCTTCACAAATGACAGCAT+TGG 0.474342 tig0013888:-1589 Msa1353620:intergenic
GAATAACGTGTTGGGAAAGA+TGG 0.476145 tig0013888:+1374 Msa1353620:CDS
GCTGCCGAATACTTCTATAT+CGG 0.477399 tig0013888:-1049 Msa1353620:intergenic
TCCATGCTCACGCTCTCGTC+CGG 0.480063 tig0013888:-1939 Msa1353620:intergenic
AAGGTACATCCGAATATGAT+TGG 0.489420 tig0013888:+1247 Msa1353620:CDS
GTGAAGGCTACCATTTGAGT+TGG 0.490964 tig0013888:-1079 Msa1353620:intergenic
TTATGTGCACATCTTCTGCT+TGG 0.493993 tig0013888:+2393 Msa1353620:CDS
CTGTCGATGATATCTGAATT+GGG 0.497389 tig0013888:-1192 Msa1353620:intergenic
AAGAGCAAGGGTGGAATCAT+CGG 0.498333 tig0013888:+1452 Msa1353620:CDS
AGCTGTCTGTCCAACTCAAA+TGG 0.502650 tig0013888:+1069 Msa1353620:CDS
GGAAAGATGGTATCGGTTGG+CGG 0.502999 tig0013888:+1387 Msa1353620:CDS
GGATTCATGAATAACGTGTT+GGG 0.509988 tig0013888:+1366 Msa1353620:CDS
AGGATTCATGAATAACGTGT+TGG 0.512384 tig0013888:+1365 Msa1353620:CDS
GGCTACCGTTTAAGTTGGAC+TGG 0.514240 tig0013888:-1218 Msa1353620:intergenic
AGAGCTGGGCTATAAGGAAT+CGG 0.517165 tig0013888:+1152 Msa1353620:CDS
GTGGAGGCTACCGTTTAAGT+TGG 0.523399 tig0013888:-1223 Msa1353620:intergenic
ATTCTCTTCTTATCATCTCT+AGG 0.523465 tig0013888:-2125 Msa1353620:intergenic
GATTCTCCTTCATCTTCTAG+TGG 0.524436 tig0013888:+865 Msa1353620:CDS
CATTATCTTGAGATGTACCT+TGG 0.526204 tig0013888:-1101 Msa1353620:intergenic
CAAAAGAAACGTAGTTCAGC+CGG 0.533280 tig0013888:+649 Msa1353620:CDS
GCTTGTTTCCAAAGAAACAT+TGG 0.537666 tig0013888:-779 Msa1353620:intergenic
GTTAGGTGCTTACATGTTGG+AGG 0.539755 tig0013888:+1425 Msa1353620:CDS
CTTAAAGTCTCAGCAAACCT+TGG 0.540575 tig0013888:-2062 Msa1353620:intergenic
GGTATGTGATGCAAAGCAAA+AGG 0.541821 tig0013888:-1918 Msa1353620:intergenic
GACTGTTGCTGGTAGTATAA+CGG 0.543849 tig0013888:-676 Msa1353620:intergenic
CATGCTCTCAAGCATAAACC+TGG 0.546708 tig0013888:+1684 Msa1353620:CDS
CGAACGAACGGAGGTCCGCC+AGG 0.546839 tig0013888:-1702 Msa1353620:intergenic
AAGGTTAGGTGCTTACATGT+TGG 0.546985 tig0013888:+1422 Msa1353620:CDS
TTGGCGGTTCTCCAATTCAA+AGG 0.547368 tig0013888:+1403 Msa1353620:CDS
TTCTTTGGAAACAAGCAACT+GGG 0.548975 tig0013888:+786 Msa1353620:CDS
CTGGTAGTATAACGGTATAC+CGG 0.553841 tig0013888:-668 Msa1353620:intergenic
ACCGGACGAGAGCGTGAGCA+TGG 0.554808 tig0013888:+1938 Msa1353620:CDS
CTTGAGATGTACCTTGGTGA+AGG 0.559050 tig0013888:-1095 Msa1353620:intergenic
AACACAAATGTATCGCCGTT+AGG 0.563179 tig0013888:+949 Msa1353620:CDS
TCTTCACCAGTCTCAAAAGC+CGG 0.563592 tig0013888:-1974 Msa1353620:intergenic
ACCGTTACCGTTGAGTACCT+CGG 0.565129 tig0013888:+2274 Msa1353620:CDS
GGAGGGATTAAGAGCAAGGG+TGG 0.565223 tig0013888:+1443 Msa1353620:CDS
GAGTCATAGTGAGAAAATTG+TGG 0.570992 tig0013888:-919 Msa1353620:intergenic
CATATTCGGATGTACCTTGG+TGG 0.571085 tig0013888:-1242 Msa1353620:intergenic
CAATCGTTTCATGCTAGAGG+TGG 0.577074 tig0013888:+1747 Msa1353620:CDS
ACCGAGGTACTCAACGGTAA+CGG 0.577215 tig0013888:-2275 Msa1353620:intergenic
AATCATATTCGGATGTACCT+TGG 0.577241 tig0013888:-1245 Msa1353620:intergenic
TGTTGGAGGGATTAAGAGCA+AGG 0.578699 tig0013888:+1439 Msa1353620:CDS
TCACAATCGTTTCATGCTAG+AGG 0.578887 tig0013888:+1744 Msa1353620:CDS
TTAGGTGCTTACATGTTGGA+GGG 0.580819 tig0013888:+1426 Msa1353620:CDS
TCCACAAATAACACGACCTT+AGG 0.582649 tig0013888:-2005 Msa1353620:intergenic
GCATGGAGAATCATAGAGAC+CGG 0.589076 tig0013888:+1955 Msa1353620:CDS
GCATTACCACTAGAAGATGA+AGG 0.589681 tig0013888:-871 Msa1353620:intergenic
GTGGTAATGCATCCAACACC+AGG 0.589942 tig0013888:+884 Msa1353620:CDS
CGATACATTTGTGTTGTCAG+AGG 0.591652 tig0013888:-941 Msa1353620:intergenic
CGTTAACATCATAGCTTGTG+AGG 0.593625 tig0013888:+2181 Msa1353620:CDS
ATTCGGATGTACCTTGGTGG+AGG 0.599110 tig0013888:-1239 Msa1353620:intergenic
CGTGTTGGGAAAGATGGTAT+CGG 0.599692 tig0013888:+1380 Msa1353620:CDS
TTGGGAAAGATGGTATCGGT+TGG 0.601702 tig0013888:+1384 Msa1353620:CDS
GGCTACTTGAGAAGATTCCA+AGG 0.613501 tig0013888:-824 Msa1353620:intergenic
GAATTAATGATTTCAGAGCT+GGG 0.614508 tig0013888:+1138 Msa1353620:CDS
GTTAACATCATAGCTTGTGA+GGG 0.618537 tig0013888:+2182 Msa1353620:CDS
ATGAACTGTTTGGAAAATGG+AGG 0.640291 tig0013888:+2225 Msa1353620:CDS
GCACTAGAGTAAACACCTAA+CGG 0.650576 tig0013888:-964 Msa1353620:intergenic
ATTGACTTCCAAATTGCACA+AGG 0.655189 tig0013888:+1639 Msa1353620:CDS
GTTAGGTGTTTACTCTAGTG+CGG 0.655711 tig0013888:+966 Msa1353620:CDS
TGTTAAAATGTATGGATGTG+AGG 0.656156 tig0013888:+1842 Msa1353620:CDS
GTTGGAGGGATTAAGAGCAA+GGG 0.658974 tig0013888:+1440 Msa1353620:CDS
ATGTTGCTATCAATTTAGCG+TGG 0.662028 tig0013888:+2360 Msa1353620:CDS
AATGTTTGAATCAATTGATG+TGG 0.662206 tig0013888:+2097 Msa1353620:CDS
TCAATCACCGAGGTACTCAA+CGG 0.669899 tig0013888:-2281 Msa1353620:intergenic
ATACCTGTTACACGAACGAA+CGG 0.677244 tig0013888:-1714 Msa1353620:intergenic
CCTGTTACACGAACGAACGG+AGG 0.680914 tig0013888:-1711 Msa1353620:intergenic
GTTTACTCTAGTGCGGACGA+TGG 0.696726 tig0013888:+973 Msa1353620:CDS
TAATGCAGAACAACACTGTG+TGG 0.712966 tig0013888:+2148 Msa1353620:CDS
GCTCTCAAGCATAAACCTGG+CGG 0.733186 tig0013888:+1687 Msa1353620:CDS
TCAAATGGTAGCCTTCACCA+AGG 0.752690 tig0013888:+1084 Msa1353620:CDS
GAGCAAGGGTGGAATCATCG+GGG 0.766989 tig0013888:+1454 Msa1353620:CDS
TTAAACGGTAGCCTCCACCA+AGG 0.778392 tig0013888:+1228 Msa1353620:CDS
TCTAACTGAATCAATCACCG+AGG 0.797585 tig0013888:-2291 Msa1353620:intergenic
AAATTGCACAAGGATCACAG+TGG 0.820097 tig0013888:+1649 Msa1353620:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGATTTCAATAAAGATTAT+AGG + tig0013888:2324-2343 Msa1353620:CDS 15.0%
!! AAGATTTCAATAAAGATTAT+AGG + tig0013888:2324-2343 Msa1353620:CDS 15.0%
!! TTGCAAATCAATTCAAATAA+TGG + tig0013888:739-758 Msa1353620:CDS 20.0%
!! TGTAAGCAAATTGAAAATAT+GGG - tig0013888:1563-1582 Msa1353620:intergenic 20.0%
!! ATGTAAGCAAATTGAAAATA+TGG - tig0013888:1564-1583 Msa1353620:intergenic 20.0%
!! TTCAATAGTGTTAAAATGTA+TGG + tig0013888:1834-1853 Msa1353620:CDS 20.0%
!! TTGCAAATCAATTCAAATAA+TGG + tig0013888:739-758 Msa1353620:CDS 20.0%
!! TGTAAGCAAATTGAAAATAT+GGG - tig0013888:1563-1582 Msa1353620:intergenic 20.0%
!! ATGTAAGCAAATTGAAAATA+TGG - tig0013888:1564-1583 Msa1353620:intergenic 20.0%
!! TTCAATAGTGTTAAAATGTA+TGG + tig0013888:1834-1853 Msa1353620:CDS 20.0%
! ATCAAAAGCTATGAATTCAT+TGG - tig0013888:848-867 Msa1353620:intergenic 25.0%
! AAAGCTCAATTTCTTTCATT+TGG - tig0013888:1017-1036 Msa1353620:intergenic 25.0%
!! AATTTGAGACCAATCATATT+CGG - tig0013888:1259-1278 Msa1353620:intergenic 25.0%
! TTAACACTATTGAACTCAAA+TGG - tig0013888:1828-1847 Msa1353620:intergenic 25.0%
! AATGTTTGAATCAATTGATG+TGG + tig0013888:2097-2116 Msa1353620:CDS 25.0%
! ATCAAAAGCTATGAATTCAT+TGG - tig0013888:848-867 Msa1353620:intergenic 25.0%
! AAAGCTCAATTTCTTTCATT+TGG - tig0013888:1017-1036 Msa1353620:intergenic 25.0%
!! AATTTGAGACCAATCATATT+CGG - tig0013888:1259-1278 Msa1353620:intergenic 25.0%
! TTAACACTATTGAACTCAAA+TGG - tig0013888:1828-1847 Msa1353620:intergenic 25.0%
! AATGTTTGAATCAATTGATG+TGG + tig0013888:2097-2116 Msa1353620:CDS 25.0%
TCAAAGAACCAATGTTTCTT+TGG + tig0013888:771-790 Msa1353620:CDS 30.0%
TGAGAAAATTGTGGTGAAAA+AGG - tig0013888:913-932 Msa1353620:intergenic 30.0%
GAAAGAAATTGAGCTTTCAT+TGG + tig0013888:1020-1039 Msa1353620:CDS 30.0%
TGAATTAATGATTTCAGAGC+TGG + tig0013888:1137-1156 Msa1353620:CDS 30.0%
GAATTAATGATTTCAGAGCT+GGG + tig0013888:1138-1157 Msa1353620:CDS 30.0%
! GGTGATTTTCAAAAAGCAAT+AGG + tig0013888:1345-1364 Msa1353620:CDS 30.0%
TGTTAAAATGTATGGATGTG+AGG + tig0013888:1842-1861 Msa1353620:CDS 30.0%
ATTCTCTTCTTATCATCTCT+AGG - tig0013888:2128-2147 Msa1353620:intergenic 30.0%
! ATGGAGGAAAAGATTTTCAA+TGG + tig0013888:2241-2260 Msa1353620:CDS 30.0%
TCAAAGAACCAATGTTTCTT+TGG + tig0013888:771-790 Msa1353620:CDS 30.0%
TGAGAAAATTGTGGTGAAAA+AGG - tig0013888:913-932 Msa1353620:intergenic 30.0%
GAAAGAAATTGAGCTTTCAT+TGG + tig0013888:1020-1039 Msa1353620:CDS 30.0%
TGAATTAATGATTTCAGAGC+TGG + tig0013888:1137-1156 Msa1353620:CDS 30.0%
GAATTAATGATTTCAGAGCT+GGG + tig0013888:1138-1157 Msa1353620:CDS 30.0%
! GGTGATTTTCAAAAAGCAAT+AGG + tig0013888:1345-1364 Msa1353620:CDS 30.0%
TGTTAAAATGTATGGATGTG+AGG + tig0013888:1842-1861 Msa1353620:CDS 30.0%
ATTCTCTTCTTATCATCTCT+AGG - tig0013888:2128-2147 Msa1353620:intergenic 30.0%
! ATGGAGGAAAAGATTTTCAA+TGG + tig0013888:2241-2260 Msa1353620:CDS 30.0%
GCTTGTTTCCAAAGAAACAT+TGG - tig0013888:782-801 Msa1353620:intergenic 35.0%
! TTTCTTTGGAAACAAGCAAC+TGG + tig0013888:785-804 Msa1353620:CDS 35.0%
! TTCTTTGGAAACAAGCAACT+GGG + tig0013888:786-805 Msa1353620:CDS 35.0%
GAGTCATAGTGAGAAAATTG+TGG - tig0013888:922-941 Msa1353620:intergenic 35.0%
GAAATTGAGCTTTCATTGGT+AGG + tig0013888:1024-1043 Msa1353620:CDS 35.0%
!! GGTACCGATATAGAAGTATT+CGG + tig0013888:1045-1064 Msa1353620:CDS 35.0%
CATTATCTTGAGATGTACCT+TGG - tig0013888:1104-1123 Msa1353620:intergenic 35.0%
GAATCGGAGATTTCATTGTT+AGG + tig0013888:1168-1187 Msa1353620:CDS 35.0%
CTGTCGATGATATCTGAATT+GGG - tig0013888:1195-1214 Msa1353620:intergenic 35.0%
AATCATATTCGGATGTACCT+TGG - tig0013888:1248-1267 Msa1353620:intergenic 35.0%
AAGGTACATCCGAATATGAT+TGG + tig0013888:1247-1266 Msa1353620:CDS 35.0%
! TCTTCTTTCAAGTCTAGCTT+TGG - tig0013888:1294-1313 Msa1353620:intergenic 35.0%
TGTGCACAGTTTGTATTTGA+TGG + tig0013888:1324-1343 Msa1353620:CDS 35.0%
AGGATTCATGAATAACGTGT+TGG + tig0013888:1365-1384 Msa1353620:CDS 35.0%
GGATTCATGAATAACGTGTT+GGG + tig0013888:1366-1385 Msa1353620:CDS 35.0%
TAAGCACCTAACCTTTGAAT+TGG - tig0013888:1417-1436 Msa1353620:intergenic 35.0%
! ATTGACTTCCAAATTGCACA+AGG + tig0013888:1639-1658 Msa1353620:CDS 35.0%
! TTTTGCTTTGCATCACATAC+CGG + tig0013888:1920-1939 Msa1353620:CDS 35.0%
!! ACACATCTCCATTTTTACCA+AGG + tig0013888:2045-2064 Msa1353620:CDS 35.0%
TCAGCAAACCTTGGTAAAAA+TGG - tig0013888:2056-2075 Msa1353620:intergenic 35.0%
! GTTAACATCATAGCTTGTGA+GGG + tig0013888:2182-2201 Msa1353620:CDS 35.0%
GTTGAAAGACATGAACTGTT+TGG + tig0013888:2215-2234 Msa1353620:CDS 35.0%
GACATGAACTGTTTGGAAAA+TGG + tig0013888:2222-2241 Msa1353620:CDS 35.0%
ATGAACTGTTTGGAAAATGG+AGG + tig0013888:2225-2244 Msa1353620:CDS 35.0%
! GAGGAAAAGATTTTCAATGG+CGG + tig0013888:2244-2263 Msa1353620:CDS 35.0%
! AGGAAAAGATTTTCAATGGC+GGG + tig0013888:2245-2264 Msa1353620:CDS 35.0%
ATGTTGCTATCAATTTAGCG+TGG + tig0013888:2360-2379 Msa1353620:CDS 35.0%
GCTTGTTTCCAAAGAAACAT+TGG - tig0013888:782-801 Msa1353620:intergenic 35.0%
! TTTCTTTGGAAACAAGCAAC+TGG + tig0013888:785-804 Msa1353620:CDS 35.0%
! TTCTTTGGAAACAAGCAACT+GGG + tig0013888:786-805 Msa1353620:CDS 35.0%
GAGTCATAGTGAGAAAATTG+TGG - tig0013888:922-941 Msa1353620:intergenic 35.0%
GAAATTGAGCTTTCATTGGT+AGG + tig0013888:1024-1043 Msa1353620:CDS 35.0%
!! GGTACCGATATAGAAGTATT+CGG + tig0013888:1045-1064 Msa1353620:CDS 35.0%
CATTATCTTGAGATGTACCT+TGG - tig0013888:1104-1123 Msa1353620:intergenic 35.0%
GAATCGGAGATTTCATTGTT+AGG + tig0013888:1168-1187 Msa1353620:CDS 35.0%
CTGTCGATGATATCTGAATT+GGG - tig0013888:1195-1214 Msa1353620:intergenic 35.0%
AATCATATTCGGATGTACCT+TGG - tig0013888:1248-1267 Msa1353620:intergenic 35.0%
AAGGTACATCCGAATATGAT+TGG + tig0013888:1247-1266 Msa1353620:CDS 35.0%
! TCTTCTTTCAAGTCTAGCTT+TGG - tig0013888:1294-1313 Msa1353620:intergenic 35.0%
TGTGCACAGTTTGTATTTGA+TGG + tig0013888:1324-1343 Msa1353620:CDS 35.0%
AGGATTCATGAATAACGTGT+TGG + tig0013888:1365-1384 Msa1353620:CDS 35.0%
GGATTCATGAATAACGTGTT+GGG + tig0013888:1366-1385 Msa1353620:CDS 35.0%
TAAGCACCTAACCTTTGAAT+TGG - tig0013888:1417-1436 Msa1353620:intergenic 35.0%
! ATTGACTTCCAAATTGCACA+AGG + tig0013888:1639-1658 Msa1353620:CDS 35.0%
! TTTTGCTTTGCATCACATAC+CGG + tig0013888:1920-1939 Msa1353620:CDS 35.0%
!! ACACATCTCCATTTTTACCA+AGG + tig0013888:2045-2064 Msa1353620:CDS 35.0%
TCAGCAAACCTTGGTAAAAA+TGG - tig0013888:2056-2075 Msa1353620:intergenic 35.0%
! GTTAACATCATAGCTTGTGA+GGG + tig0013888:2182-2201 Msa1353620:CDS 35.0%
GTTGAAAGACATGAACTGTT+TGG + tig0013888:2215-2234 Msa1353620:CDS 35.0%
GACATGAACTGTTTGGAAAA+TGG + tig0013888:2222-2241 Msa1353620:CDS 35.0%
ATGAACTGTTTGGAAAATGG+AGG + tig0013888:2225-2244 Msa1353620:CDS 35.0%
! GAGGAAAAGATTTTCAATGG+CGG + tig0013888:2244-2263 Msa1353620:CDS 35.0%
! AGGAAAAGATTTTCAATGGC+GGG + tig0013888:2245-2264 Msa1353620:CDS 35.0%
ATGTTGCTATCAATTTAGCG+TGG + tig0013888:2360-2379 Msa1353620:CDS 35.0%
CAAAAGAAACGTAGTTCAGC+CGG + tig0013888:649-668 Msa1353620:CDS 40.0%
CTGGTAGTATAACGGTATAC+CGG - tig0013888:671-690 Msa1353620:intergenic 40.0%
GACTGTTGCTGGTAGTATAA+CGG - tig0013888:679-698 Msa1353620:intergenic 40.0%
! GGAGAAGCAATTTTGTACCT+TGG + tig0013888:807-826 Msa1353620:CDS 40.0%
GATTCTCCTTCATCTTCTAG+TGG + tig0013888:865-884 Msa1353620:CDS 40.0%
GCATTACCACTAGAAGATGA+AGG - tig0013888:874-893 Msa1353620:intergenic 40.0%
TGAAAAAGGATTCCTGGTGT+TGG - tig0013888:899-918 Msa1353620:intergenic 40.0%
TTGTGGTGAAAAAGGATTCC+TGG - tig0013888:905-924 Msa1353620:intergenic 40.0%
CGATACATTTGTGTTGTCAG+AGG - tig0013888:944-963 Msa1353620:intergenic 40.0%
AACACAAATGTATCGCCGTT+AGG + tig0013888:949-968 Msa1353620:CDS 40.0%
GCACTAGAGTAAACACCTAA+CGG - tig0013888:967-986 Msa1353620:intergenic 40.0%
GTTAGGTGTTTACTCTAGTG+CGG + tig0013888:966-985 Msa1353620:CDS 40.0%
GCTGCCGAATACTTCTATAT+CGG - tig0013888:1052-1071 Msa1353620:intergenic 40.0%
GCTGTCGATGATATCTGAAT+TGG - tig0013888:1196-1215 Msa1353620:intergenic 40.0%
GAATAACGTGTTGGGAAAGA+TGG + tig0013888:1374-1393 Msa1353620:CDS 40.0%
GGTTCTCCAATTCAAAGGTT+AGG + tig0013888:1408-1427 Msa1353620:CDS 40.0%
AAGGTTAGGTGCTTACATGT+TGG + tig0013888:1422-1441 Msa1353620:CDS 40.0%
TTAGGTGCTTACATGTTGGA+GGG + tig0013888:1426-1445 Msa1353620:CDS 40.0%
CTCATCAACTCATTGCTTGT+TGG - tig0013888:1513-1532 Msa1353620:intergenic 40.0%
TGCTTCACAAATGACAGCAT+TGG - tig0013888:1592-1611 Msa1353620:intergenic 40.0%
ACTGTGATCCTTGTGCAATT+TGG - tig0013888:1650-1669 Msa1353620:intergenic 40.0%
AAATTGCACAAGGATCACAG+TGG + tig0013888:1649-1668 Msa1353620:CDS 40.0%
ATACCTGTTACACGAACGAA+CGG - tig0013888:1717-1736 Msa1353620:intergenic 40.0%
TCACAATCGTTTCATGCTAG+AGG + tig0013888:1744-1763 Msa1353620:CDS 40.0%
GGTGGAAGACTTGATATTGT+AGG + tig0013888:1765-1784 Msa1353620:CDS 40.0%
GGTATGTGATGCAAAGCAAA+AGG - tig0013888:1921-1940 Msa1353620:intergenic 40.0%
TCCACAAATAACACGACCTT+AGG - tig0013888:2008-2027 Msa1353620:intergenic 40.0%
CTTAAAGTCTCAGCAAACCT+TGG - tig0013888:2065-2084 Msa1353620:intergenic 40.0%
TAATGCAGAACAACACTGTG+TGG + tig0013888:2148-2167 Msa1353620:CDS 40.0%
! CGTTAACATCATAGCTTGTG+AGG + tig0013888:2181-2200 Msa1353620:CDS 40.0%
TCTAACTGAATCAATCACCG+AGG - tig0013888:2294-2313 Msa1353620:intergenic 40.0%
TTATGTGCACATCTTCTGCT+TGG + tig0013888:2393-2412 Msa1353620:CDS 40.0%
CAAAAGAAACGTAGTTCAGC+CGG + tig0013888:649-668 Msa1353620:CDS 40.0%
CTGGTAGTATAACGGTATAC+CGG - tig0013888:671-690 Msa1353620:intergenic 40.0%
GACTGTTGCTGGTAGTATAA+CGG - tig0013888:679-698 Msa1353620:intergenic 40.0%
! GGAGAAGCAATTTTGTACCT+TGG + tig0013888:807-826 Msa1353620:CDS 40.0%
GATTCTCCTTCATCTTCTAG+TGG + tig0013888:865-884 Msa1353620:CDS 40.0%
GCATTACCACTAGAAGATGA+AGG - tig0013888:874-893 Msa1353620:intergenic 40.0%
TGAAAAAGGATTCCTGGTGT+TGG - tig0013888:899-918 Msa1353620:intergenic 40.0%
TTGTGGTGAAAAAGGATTCC+TGG - tig0013888:905-924 Msa1353620:intergenic 40.0%
CGATACATTTGTGTTGTCAG+AGG - tig0013888:944-963 Msa1353620:intergenic 40.0%
AACACAAATGTATCGCCGTT+AGG + tig0013888:949-968 Msa1353620:CDS 40.0%
GCACTAGAGTAAACACCTAA+CGG - tig0013888:967-986 Msa1353620:intergenic 40.0%
GTTAGGTGTTTACTCTAGTG+CGG + tig0013888:966-985 Msa1353620:CDS 40.0%
GCTGCCGAATACTTCTATAT+CGG - tig0013888:1052-1071 Msa1353620:intergenic 40.0%
GCTGTCGATGATATCTGAAT+TGG - tig0013888:1196-1215 Msa1353620:intergenic 40.0%
GAATAACGTGTTGGGAAAGA+TGG + tig0013888:1374-1393 Msa1353620:CDS 40.0%
GGTTCTCCAATTCAAAGGTT+AGG + tig0013888:1408-1427 Msa1353620:CDS 40.0%
AAGGTTAGGTGCTTACATGT+TGG + tig0013888:1422-1441 Msa1353620:CDS 40.0%
TTAGGTGCTTACATGTTGGA+GGG + tig0013888:1426-1445 Msa1353620:CDS 40.0%
CTCATCAACTCATTGCTTGT+TGG - tig0013888:1513-1532 Msa1353620:intergenic 40.0%
TGCTTCACAAATGACAGCAT+TGG - tig0013888:1592-1611 Msa1353620:intergenic 40.0%
ACTGTGATCCTTGTGCAATT+TGG - tig0013888:1650-1669 Msa1353620:intergenic 40.0%
AAATTGCACAAGGATCACAG+TGG + tig0013888:1649-1668 Msa1353620:CDS 40.0%
ATACCTGTTACACGAACGAA+CGG - tig0013888:1717-1736 Msa1353620:intergenic 40.0%
TCACAATCGTTTCATGCTAG+AGG + tig0013888:1744-1763 Msa1353620:CDS 40.0%
GGTGGAAGACTTGATATTGT+AGG + tig0013888:1765-1784 Msa1353620:CDS 40.0%
GGTATGTGATGCAAAGCAAA+AGG - tig0013888:1921-1940 Msa1353620:intergenic 40.0%
TCCACAAATAACACGACCTT+AGG - tig0013888:2008-2027 Msa1353620:intergenic 40.0%
CTTAAAGTCTCAGCAAACCT+TGG - tig0013888:2065-2084 Msa1353620:intergenic 40.0%
TAATGCAGAACAACACTGTG+TGG + tig0013888:2148-2167 Msa1353620:CDS 40.0%
! CGTTAACATCATAGCTTGTG+AGG + tig0013888:2181-2200 Msa1353620:CDS 40.0%
TCTAACTGAATCAATCACCG+AGG - tig0013888:2294-2313 Msa1353620:intergenic 40.0%
TTATGTGCACATCTTCTGCT+TGG + tig0013888:2393-2412 Msa1353620:CDS 40.0%
TCTGTCTCAAAGACTGTTGC+TGG - tig0013888:690-709 Msa1353620:intergenic 45.0%
GGCTACTTGAGAAGATTCCA+AGG - tig0013888:827-846 Msa1353620:intergenic 45.0%
AGCTGTCTGTCCAACTCAAA+TGG + tig0013888:1069-1088 Msa1353620:CDS 45.0%
GTGAAGGCTACCATTTGAGT+TGG - tig0013888:1082-1101 Msa1353620:intergenic 45.0%
TCAAATGGTAGCCTTCACCA+AGG + tig0013888:1084-1103 Msa1353620:CDS 45.0%
CTTGAGATGTACCTTGGTGA+AGG - tig0013888:1098-1117 Msa1353620:intergenic 45.0%
GATTTCAGAGCTGGGCTATA+AGG + tig0013888:1146-1165 Msa1353620:CDS 45.0%
AGAGCTGGGCTATAAGGAAT+CGG + tig0013888:1152-1171 Msa1353620:CDS 45.0%
AGCTGCCAGTCCAACTTAAA+CGG + tig0013888:1213-1232 Msa1353620:CDS 45.0%
CATATTCGGATGTACCTTGG+TGG - tig0013888:1245-1264 Msa1353620:intergenic 45.0%
CGTGTTGGGAAAGATGGTAT+CGG + tig0013888:1380-1399 Msa1353620:CDS 45.0%
!! TTGGGAAAGATGGTATCGGT+TGG + tig0013888:1384-1403 Msa1353620:CDS 45.0%
TTGGCGGTTCTCCAATTCAA+AGG + tig0013888:1403-1422 Msa1353620:CDS 45.0%
GTTAGGTGCTTACATGTTGG+AGG + tig0013888:1425-1444 Msa1353620:CDS 45.0%
TGTTGGAGGGATTAAGAGCA+AGG + tig0013888:1439-1458 Msa1353620:CDS 45.0%
GTTGGAGGGATTAAGAGCAA+GGG + tig0013888:1440-1459 Msa1353620:CDS 45.0%
AAGAGCAAGGGTGGAATCAT+CGG + tig0013888:1452-1471 Msa1353620:CDS 45.0%
CATGCTCTCAAGCATAAACC+TGG + tig0013888:1684-1703 Msa1353620:CDS 45.0%
CAATCGTTTCATGCTAGAGG+TGG + tig0013888:1747-1766 Msa1353620:CDS 45.0%
GTATGGATGTGAGGTTCAAC+TGG + tig0013888:1851-1870 Msa1353620:CDS 45.0%
GCATGGAGAATCATAGAGAC+CGG + tig0013888:1955-1974 Msa1353620:CDS 45.0%
TCTTCACCAGTCTCAAAAGC+CGG - tig0013888:1977-1996 Msa1353620:intergenic 45.0%
! GGTGAAGATTTTGTCGCCTA+AGG + tig0013888:1989-2008 Msa1353620:CDS 45.0%
!! GCCTAAGGTCGTGTTATTTG+TGG + tig0013888:2004-2023 Msa1353620:CDS 45.0%
! TCAATCACCGAGGTACTCAA+CGG - tig0013888:2284-2303 Msa1353620:intergenic 45.0%
TCTGTCTCAAAGACTGTTGC+TGG - tig0013888:690-709 Msa1353620:intergenic 45.0%
GGCTACTTGAGAAGATTCCA+AGG - tig0013888:827-846 Msa1353620:intergenic 45.0%
AGCTGTCTGTCCAACTCAAA+TGG + tig0013888:1069-1088 Msa1353620:CDS 45.0%
GTGAAGGCTACCATTTGAGT+TGG - tig0013888:1082-1101 Msa1353620:intergenic 45.0%
TCAAATGGTAGCCTTCACCA+AGG + tig0013888:1084-1103 Msa1353620:CDS 45.0%
CTTGAGATGTACCTTGGTGA+AGG - tig0013888:1098-1117 Msa1353620:intergenic 45.0%
GATTTCAGAGCTGGGCTATA+AGG + tig0013888:1146-1165 Msa1353620:CDS 45.0%
AGAGCTGGGCTATAAGGAAT+CGG + tig0013888:1152-1171 Msa1353620:CDS 45.0%
AGCTGCCAGTCCAACTTAAA+CGG + tig0013888:1213-1232 Msa1353620:CDS 45.0%
CATATTCGGATGTACCTTGG+TGG - tig0013888:1245-1264 Msa1353620:intergenic 45.0%
CGTGTTGGGAAAGATGGTAT+CGG + tig0013888:1380-1399 Msa1353620:CDS 45.0%
!! TTGGGAAAGATGGTATCGGT+TGG + tig0013888:1384-1403 Msa1353620:CDS 45.0%
TTGGCGGTTCTCCAATTCAA+AGG + tig0013888:1403-1422 Msa1353620:CDS 45.0%
GTTAGGTGCTTACATGTTGG+AGG + tig0013888:1425-1444 Msa1353620:CDS 45.0%
TGTTGGAGGGATTAAGAGCA+AGG + tig0013888:1439-1458 Msa1353620:CDS 45.0%
GTTGGAGGGATTAAGAGCAA+GGG + tig0013888:1440-1459 Msa1353620:CDS 45.0%
AAGAGCAAGGGTGGAATCAT+CGG + tig0013888:1452-1471 Msa1353620:CDS 45.0%
CATGCTCTCAAGCATAAACC+TGG + tig0013888:1684-1703 Msa1353620:CDS 45.0%
CAATCGTTTCATGCTAGAGG+TGG + tig0013888:1747-1766 Msa1353620:CDS 45.0%
GTATGGATGTGAGGTTCAAC+TGG + tig0013888:1851-1870 Msa1353620:CDS 45.0%
GCATGGAGAATCATAGAGAC+CGG + tig0013888:1955-1974 Msa1353620:CDS 45.0%
TCTTCACCAGTCTCAAAAGC+CGG - tig0013888:1977-1996 Msa1353620:intergenic 45.0%
! GGTGAAGATTTTGTCGCCTA+AGG + tig0013888:1989-2008 Msa1353620:CDS 45.0%
!! GCCTAAGGTCGTGTTATTTG+TGG + tig0013888:2004-2023 Msa1353620:CDS 45.0%
! TCAATCACCGAGGTACTCAA+CGG - tig0013888:2284-2303 Msa1353620:intergenic 45.0%
! GTGGTAATGCATCCAACACC+AGG + tig0013888:884-903 Msa1353620:CDS 50.0%
GTTTACTCTAGTGCGGACGA+TGG + tig0013888:973-992 Msa1353620:CDS 50.0%
!! GGCTACCGTTTAAGTTGGAC+TGG - tig0013888:1221-1240 Msa1353620:intergenic 50.0%
GTGGAGGCTACCGTTTAAGT+TGG - tig0013888:1226-1245 Msa1353620:intergenic 50.0%
TTAAACGGTAGCCTCCACCA+AGG + tig0013888:1228-1247 Msa1353620:CDS 50.0%
ATTCGGATGTACCTTGGTGG+AGG - tig0013888:1242-1261 Msa1353620:intergenic 50.0%
!! GGAAAGATGGTATCGGTTGG+CGG + tig0013888:1387-1406 Msa1353620:CDS 50.0%
AGAGCAAGGGTGGAATCATC+GGG + tig0013888:1453-1472 Msa1353620:CDS 50.0%
GCTCTCAAGCATAAACCTGG+CGG + tig0013888:1687-1706 Msa1353620:CDS 50.0%
!!! TAGAGACCGGCTTTTGAGAC+TGG + tig0013888:1968-1987 Msa1353620:CDS 50.0%
!! GGTCGTGTTATTTGTGGAGC+AGG + tig0013888:2010-2029 Msa1353620:CDS 50.0%
ACCGTTACCGTTGAGTACCT+CGG + tig0013888:2274-2293 Msa1353620:CDS 50.0%
! ACCGAGGTACTCAACGGTAA+CGG - tig0013888:2278-2297 Msa1353620:intergenic 50.0%
! GTGGTAATGCATCCAACACC+AGG + tig0013888:884-903 Msa1353620:CDS 50.0%
GTTTACTCTAGTGCGGACGA+TGG + tig0013888:973-992 Msa1353620:CDS 50.0%
!! GGCTACCGTTTAAGTTGGAC+TGG - tig0013888:1221-1240 Msa1353620:intergenic 50.0%
GTGGAGGCTACCGTTTAAGT+TGG - tig0013888:1226-1245 Msa1353620:intergenic 50.0%
TTAAACGGTAGCCTCCACCA+AGG + tig0013888:1228-1247 Msa1353620:CDS 50.0%
ATTCGGATGTACCTTGGTGG+AGG - tig0013888:1242-1261 Msa1353620:intergenic 50.0%
!! GGAAAGATGGTATCGGTTGG+CGG + tig0013888:1387-1406 Msa1353620:CDS 50.0%
AGAGCAAGGGTGGAATCATC+GGG + tig0013888:1453-1472 Msa1353620:CDS 50.0%
GCTCTCAAGCATAAACCTGG+CGG + tig0013888:1687-1706 Msa1353620:CDS 50.0%
!!! TAGAGACCGGCTTTTGAGAC+TGG + tig0013888:1968-1987 Msa1353620:CDS 50.0%
!! GGTCGTGTTATTTGTGGAGC+AGG + tig0013888:2010-2029 Msa1353620:CDS 50.0%
ACCGTTACCGTTGAGTACCT+CGG + tig0013888:2274-2293 Msa1353620:CDS 50.0%
! ACCGAGGTACTCAACGGTAA+CGG - tig0013888:2278-2297 Msa1353620:intergenic 50.0%
GGAGGGATTAAGAGCAAGGG+TGG + tig0013888:1443-1462 Msa1353620:CDS 55.0%
GAGCAAGGGTGGAATCATCG+GGG + tig0013888:1454-1473 Msa1353620:CDS 55.0%
CCTGTTACACGAACGAACGG+AGG - tig0013888:1714-1733 Msa1353620:intergenic 55.0%
CCTCCGTTCGTTCGTGTAAC+AGG + tig0013888:1711-1730 Msa1353620:CDS 55.0%
GGAGGGATTAAGAGCAAGGG+TGG + tig0013888:1443-1462 Msa1353620:CDS 55.0%
GAGCAAGGGTGGAATCATCG+GGG + tig0013888:1454-1473 Msa1353620:CDS 55.0%
CCTGTTACACGAACGAACGG+AGG - tig0013888:1714-1733 Msa1353620:intergenic 55.0%
CCTCCGTTCGTTCGTGTAAC+AGG + tig0013888:1711-1730 Msa1353620:CDS 55.0%
TCCATGCTCACGCTCTCGTC+CGG - tig0013888:1942-1961 Msa1353620:intergenic 60.0%
TCCATGCTCACGCTCTCGTC+CGG - tig0013888:1942-1961 Msa1353620:intergenic 60.0%
! ACCGGACGAGAGCGTGAGCA+TGG + tig0013888:1938-1957 Msa1353620:CDS 65.0%
! ACCGGACGAGAGCGTGAGCA+TGG + tig0013888:1938-1957 Msa1353620:CDS 65.0%
CGAACGAACGGAGGTCCGCC+AGG - tig0013888:1705-1724 Msa1353620:intergenic 70.0%
CGAACGAACGGAGGTCCGCC+AGG - tig0013888:1705-1724 Msa1353620:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0013888 gene 637 2427 637 ID=Msa1353620;Name=Msa1353620
tig0013888 mRNA 637 2427 637 ID=Msa1353620-mRNA-1;Parent=Msa1353620;Name=Msa1353620-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|596
tig0013888 exon 637 2427 637 ID=Msa1353620-mRNA-1:exon:8754;Parent=Msa1353620-mRNA-1
tig0013888 CDS 637 2427 637 ID=Msa1353620-mRNA-1:cds;Parent=Msa1353620-mRNA-1
Gene Sequence

>Msa1353620

ATGTATACTTCTCAAAAGAAACGTAGTTCAGCCGGTATACCGTTATACTACCAGCAACAGTCTTTGAGACAGATTGATTCAAACAACAATCGTTTCAAAACGTTGCAAATCAATTCAAATAATGGTAGTATCAGTCAAAGAACCAATGTTTCTTTGGAAACAAGCAACTGGGAGAAGCAATTTTGTACCTTGGAATCTTCTCAAGTAGCCAATGAATTCATAGCTTTTGATTCTCCTTCATCTTCTAGTGGTAATGCATCCAACACCAGGAATCCTTTTTCACCACAATTTTCTCACTATGACTCCTCTGACAACACAAATGTATCGCCGTTAGGTGTTTACTCTAGTGCGGACGATGGTAGCTTTGAATTGAAGCACCAAATGAAAGAAATTGAGCTTTCATTGGTAGGTACCGATATAGAAGTATTCGGCAGCTGTCTGTCCAACTCAAATGGTAGCCTTCACCAAGGTACATCTCAAGATAATGAGTTTCAAATTGATGAATTAATGATTTCAGAGCTGGGCTATAAGGAATCGGAGATTTCATTGTTAGGTCCCAATTCAGATATCATCGACAGCTGCCAGTCCAACTTAAACGGTAGCCTCCACCAAGGTACATCCGAATATGATTGGTCTCAAATTGTAGAAATGATTCCAAAGCTAGACTTGAAAGAAGAACTTATTAGATGTGCACAGTTTGTATTTGATGGTGATTTTCAAAAAGCAATAGGATTCATGAATAACGTGTTGGGAAAGATGGTATCGGTTGGCGGTTCTCCAATTCAAAGGTTAGGTGCTTACATGTTGGAGGGATTAAGAGCAAGGGTGGAATCATCGGGGAGTGCAATTTATAATGCGTTGAAATGTGAAGAACCAACAAGCAATGAGTTGATGAGTGCTATGCACACTTTGTATCAGATTTGCCCATATTTTCAATTTGCTTACATATCATCCAATGCTGTCATTTGTGAAGCAATGCAAAATGAATCAAGAATTCATATAATTGACTTCCAAATTGCACAAGGATCACAGTGGATGTTACTTTTGCATGCTCTCAAGCATAAACCTGGCGGACCTCCGTTCGTTCGTGTAACAGGTATCGATGATTCACAATCGTTTCATGCTAGAGGTGGAAGACTTGATATTGTAGGAAAAAAGCTAGAAGATTGTGCAAAAACTTGTAGAGTTCCATTTGAGTTCAATAGTGTTAAAATGTATGGATGTGAGGTTCAACTGGAAGATTTTGAAGTTCAACATGATGAAGTTCTTGCTGTGAATTTTCCTTTTGCTTTGCATCACATACCGGACGAGAGCGTGAGCATGGAGAATCATAGAGACCGGCTTTTGAGACTGGTGAAGATTTTGTCGCCTAAGGTCGTGTTATTTGTGGAGCAGGAGTCAAACACAAACACATCTCCATTTTTACCAAGGTTTGCTGAGACTTTAAGTTATTACACTGCAATGTTTGAATCAATTGATGTGGCTCTTCCTAGAGATGATAAGAAGAGAATTAATGCAGAACAACACTGTGTGGCTCGCGATATCGTTAACATCATAGCTTGTGAGGGAGATGAGAGAGTTGAAAGACATGAACTGTTTGGAAAATGGAGGAAAAGATTTTCAATGGCGGGTTTTGTACCGTTACCGTTGAGTACCTCGGTGATTGATTCAGTTAGAACTCTCTTGAAAGATTTCAATAAAGATTATAGGATTGAAGAAACAGATGTTGCTATCAATTTAGCGTGGAAGAGTAAAGTTATGTGCACATCTTCTGCTTGGAGATGTTATTGA
Protein sequence

>Msa1353620

MYTSQKKRSSAGIPLYYQQQSLRQIDSNNNRFKTLQINSNNGSISQRTNVSLETSNWEKQFCTLESSQVANEFIAFDSPSSSSGNASNTRNPFSPQFSHYDSSDNTNVSPLGVYSSADDGSFELKHQMKEIELSLVGTDIEVFGSCLSNSNGSLHQGTSQDNEFQIDELMISELGYKESEISLLGPNSDIIDSCQSNLNGSLHQGTSEYDWSQIVEMIPKLDLKEELIRCAQFVFDGDFQKAIGFMNNVLGKMVSVGGSPIQRLGAYMLEGLRARVESSGSAIYNALKCEEPTSNELMSAMHTLYQICPYFQFAYISSNAVICEAMQNESRIHIIDFQIAQGSQWMLLLHALKHKPGGPPFVRVTGIDDSQSFHARGGRLDIVGKKLEDCAKTCRVPFEFNSVKMYGCEVQLEDFEVQHDEVLAVNFPFALHHIPDESVSMENHRDRLLRLVKILSPKVVLFVEQESNTNTSPFLPRFAETLSYYTAMFESIDVALPRDDKKRINAEQHCVARDIVNIIACEGDERVERHELFGKWRKRFSMAGFVPLPLSTSVIDSVRTLLKDFNKDYRIEETDVAINLAWKSKVMCTSSAWRCY*