Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1353970 | AET05311.1 | 86.820 | 478 | 43 | 4 | 8 | 467 | 1 | 476 | 0.0 | 832 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1353970 | sp|Q8L3W1|VRN1_ARATH | 30.861 | 337 | 172 | 14 | 46 | 324 | 6 | 339 | 4.89e-34 | 134 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1353970 | G7L911 | 86.820 | 478 | 43 | 4 | 8 | 467 | 1 | 476 | 0.0 | 832 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1353970 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1353970 | MtrunA17_Chr8g0390841 | 82.834 | 501 | 43 | 5 | 8 | 467 | 1 | 499 | 0.0 | 819 |
| Msa1353970 | MtrunA17_Chr1g0208771 | 65.479 | 449 | 124 | 7 | 40 | 467 | 1 | 439 | 0.0 | 577 |
| Msa1353970 | MtrunA17_Chr1g0163071 | 47.855 | 303 | 123 | 10 | 62 | 333 | 2 | 300 | 2.13e-78 | 246 |
| Msa1353970 | MtrunA17_Chr7g0233561 | 35.127 | 316 | 148 | 9 | 44 | 321 | 16 | 312 | 1.85e-51 | 177 |
| Msa1353970 | MtrunA17_Chr3g0131891 | 33.435 | 329 | 164 | 9 | 44 | 340 | 17 | 322 | 3.03e-43 | 155 |
| Msa1353970 | MtrunA17_Chr7g0233541 | 34.237 | 295 | 143 | 11 | 62 | 321 | 2 | 280 | 1.22e-40 | 147 |
| Msa1353970 | MtrunA17_Chr3g0103181 | 31.818 | 308 | 141 | 9 | 44 | 320 | 10 | 279 | 9.84e-39 | 141 |
| Msa1353970 | MtrunA17_Chr7g0233521 | 34.138 | 290 | 133 | 9 | 62 | 321 | 2 | 263 | 4.78e-36 | 134 |
| Msa1353970 | MtrunA17_Chr7g0233531 | 33.218 | 289 | 137 | 7 | 62 | 321 | 2 | 263 | 1.47e-35 | 133 |
| Msa1353970 | MtrunA17_Chr3g0103191 | 31.560 | 282 | 127 | 11 | 38 | 287 | 4 | 251 | 8.20e-34 | 127 |
| Msa1353970 | MtrunA17_Chr3g0103171 | 29.210 | 291 | 145 | 9 | 61 | 320 | 5 | 265 | 9.26e-32 | 122 |
| Msa1353970 | MtrunA17_Chr3g0103151 | 41.026 | 156 | 77 | 3 | 38 | 180 | 4 | 157 | 2.76e-31 | 118 |
| Msa1353970 | MtrunA17_Chr7g0233571 | 31.839 | 223 | 123 | 5 | 46 | 255 | 10 | 216 | 1.96e-28 | 112 |
| Msa1353970 | MtrunA17_Chr1g0163181 | 26.018 | 442 | 252 | 17 | 55 | 466 | 14 | 410 | 1.55e-26 | 111 |
| Msa1353970 | MtrunA17_Chr4g0067431 | 28.221 | 326 | 180 | 15 | 42 | 329 | 11 | 320 | 1.30e-24 | 103 |
| Msa1353970 | MtrunA17_Chr1g0163201 | 25.112 | 446 | 206 | 17 | 61 | 467 | 18 | 374 | 1.66e-24 | 105 |
| Msa1353970 | MtrunA17_Chr5g0419201 | 32.727 | 165 | 96 | 3 | 31 | 180 | 1 | 165 | 5.47e-23 | 96.3 |
| Msa1353970 | MtrunA17_Chr1g0163251 | 29.688 | 320 | 168 | 15 | 57 | 347 | 16 | 307 | 1.27e-22 | 99.4 |
| Msa1353970 | MtrunA17_Chr3g0103201 | 27.935 | 247 | 118 | 7 | 104 | 320 | 4 | 220 | 7.56e-22 | 93.6 |
| Msa1353970 | MtrunA17_Chr5g0429931 | 26.545 | 275 | 146 | 10 | 61 | 321 | 10 | 242 | 3.34e-19 | 87.0 |
| Msa1353970 | MtrunA17_Chr3g0077451 | 25.979 | 281 | 139 | 8 | 60 | 324 | 10 | 237 | 5.65e-19 | 85.9 |
| Msa1353970 | MtrunA17_Chr1g0163221 | 26.006 | 323 | 181 | 13 | 43 | 334 | 8 | 303 | 1.01e-18 | 87.4 |
| Msa1353970 | MtrunA17_Chr1g0163261 | 26.452 | 310 | 169 | 10 | 45 | 325 | 8 | 287 | 1.95e-18 | 85.9 |
| Msa1353970 | MtrunA17_Chr4g0033961 | 29.518 | 166 | 105 | 2 | 46 | 199 | 6 | 171 | 1.76e-17 | 84.3 |
| Msa1353970 | MtrunA17_Chr4g0033961 | 31.073 | 177 | 98 | 7 | 178 | 331 | 224 | 399 | 2.33e-14 | 74.7 |
| Msa1353970 | MtrunA17_Chr1g0163231 | 24.080 | 299 | 186 | 9 | 39 | 319 | 2 | 277 | 1.48e-16 | 80.1 |
| Msa1353970 | MtrunA17_Chr3g0077411 | 23.569 | 297 | 179 | 8 | 38 | 320 | 254 | 516 | 1.64e-16 | 82.0 |
| Msa1353970 | MtrunA17_Chr1g0171611 | 24.667 | 300 | 171 | 10 | 39 | 319 | 2 | 265 | 2.27e-16 | 79.3 |
| Msa1353970 | MtrunA17_Chr1g0162441 | 35.000 | 100 | 59 | 1 | 46 | 139 | 7 | 106 | 3.49e-13 | 71.2 |
| Msa1353970 | MtrunA17_Chr6g0467351 | 32.039 | 103 | 63 | 2 | 43 | 138 | 12 | 114 | 3.18e-12 | 66.2 |
| Msa1353970 | MtrunA17_Chr1g0154161 | 21.242 | 306 | 199 | 9 | 44 | 327 | 28 | 313 | 1.83e-11 | 65.1 |
| Msa1353970 | MtrunA17_Chr1g0163061 | 33.621 | 116 | 65 | 4 | 33 | 138 | 1 | 114 | 4.20e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1353970 | AT3G18990.1 | 30.861 | 337 | 172 | 14 | 46 | 324 | 6 | 339 | 4.98e-35 | 134 |
| Msa1353970 | AT3G18990.2 | 30.746 | 335 | 171 | 14 | 46 | 322 | 6 | 337 | 6.04e-34 | 131 |
| Msa1353970 | AT3G18960.2 | 36.538 | 104 | 60 | 1 | 45 | 142 | 29 | 132 | 1.20e-15 | 75.9 |
| Msa1353970 | AT3G18960.1 | 36.538 | 104 | 60 | 1 | 45 | 142 | 29 | 132 | 1.83e-15 | 75.5 |
| Msa1353970 | AT4G01580.1 | 36.538 | 104 | 60 | 1 | 45 | 142 | 29 | 132 | 3.18e-15 | 74.3 |
| Msa1353970 | AT1G49475.1 | 25.874 | 143 | 94 | 3 | 20 | 151 | 3 | 144 | 6.12e-13 | 67.8 |
| Msa1353970 | AT1G49480.3 | 34.821 | 112 | 53 | 5 | 231 | 324 | 115 | 224 | 8.68e-13 | 68.2 |
| Msa1353970 | AT1G49480.1 | 34.821 | 112 | 53 | 5 | 231 | 324 | 115 | 224 | 8.68e-13 | 68.2 |
| Msa1353970 | AT1G49480.2 | 34.821 | 112 | 53 | 5 | 231 | 324 | 115 | 224 | 8.68e-13 | 68.2 |
| Msa1353970 | AT3G18960.3 | 37.500 | 88 | 49 | 1 | 61 | 142 | 8 | 95 | 1.29e-11 | 63.5 |
Find 74 sgRNAs with CRISPR-Local
Find 161 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTAAACTTGTCCAAGTTAA+AGG | 0.118978 | tig0014105:+21525 | Msa1353970:CDS |
| GAACAAACTTGTTGAAAATT+TGG | 0.135205 | tig0014105:+21380 | Msa1353970:CDS |
| CTTGATCATGCTTCACATTT+AGG | 0.162093 | tig0014105:-21678 | None:intergenic |
| CGTCATGACAACAGTGAAAA+AGG | 0.196529 | tig0014105:-21770 | None:intergenic |
| CCTTTAACTTGGACAAGTTT+AGG | 0.279816 | tig0014105:-21525 | None:intergenic |
| TTAATGGAGATGGAATTAAT+TGG | 0.309089 | tig0014105:+22288 | Msa1353970:CDS |
| GTTTGTAGAGGAAAATAAAT+TGG | 0.310756 | tig0014105:+23096 | Msa1353970:CDS |
| ATAGCAGAATGCATGTTTCT+TGG | 0.358393 | tig0014105:-20033 | None:intergenic |
| TATTTCTTAGTGAAAGCATT+TGG | 0.366998 | tig0014105:-21105 | None:intergenic |
| CTCAATTTCTTATGTGGTTG+AGG | 0.369014 | tig0014105:-21453 | None:intergenic |
| GGAAGTACATTTGACCAAAA+AGG | 0.369637 | tig0014105:+21182 | Msa1353970:CDS |
| CTTCACATTTAGGCATTTAG+TGG | 0.383770 | tig0014105:-21668 | None:intergenic |
| ACCTCAACAAATATTCTAGA+TGG | 0.390301 | tig0014105:+20075 | Msa1353970:CDS |
| CAGAGTGGATGTGAATTGAT+TGG | 0.396589 | tig0014105:-22685 | None:intergenic |
| TAATGGAGATGGAATTAATT+GGG | 0.397926 | tig0014105:+22289 | Msa1353970:CDS |
| AAAACTATCATGTCACATAA+AGG | 0.411093 | tig0014105:+22344 | Msa1353970:CDS |
| CATATTTAACAAGAGTACTT+TGG | 0.415158 | tig0014105:+21317 | Msa1353970:intron |
| TCGATCACCTTTCCTGTGAA+TGG | 0.421077 | tig0014105:-19953 | None:intergenic |
| ACTCAACTTGGTTGACGGTT+CGG | 0.425773 | tig0014105:-23059 | None:intergenic |
| TCTCATTATCCATGACTTGA+AGG | 0.426650 | tig0014105:-22002 | None:intergenic |
| CTGGAGTCTTGAGAAACATT+GGG | 0.426683 | tig0014105:-21146 | None:intergenic |
| TAGCAGAATGCATGTTTCTT+GGG | 0.427746 | tig0014105:-20032 | None:intergenic |
| CCAATTCTCAATTTCTTATG+TGG | 0.430787 | tig0014105:-21459 | None:intergenic |
| CTTGTGACACAAGTACTTCT+CGG | 0.432076 | tig0014105:-22975 | None:intergenic |
| AAACCTGTGGCATGTAAGAT+TGG | 0.435151 | tig0014105:+23024 | Msa1353970:CDS |
| ATATTTGGATTCACAAGGGT+TGG | 0.435488 | tig0014105:+21211 | Msa1353970:CDS |
| CCACATAAGAAATTGAGAAT+TGG | 0.439783 | tig0014105:+21459 | Msa1353970:CDS |
| AATTTATTATACCTTTAACT+TGG | 0.446187 | tig0014105:-21536 | None:intergenic |
| CCTGTACTCAACTTGGTTGA+CGG | 0.457593 | tig0014105:-23064 | None:intergenic |
| GATCTAGTCTTCTTGCATGT+AGG | 0.464753 | tig0014105:-21411 | None:intergenic |
| TTTGATAATAATTTGAAAGT+GGG | 0.464811 | tig0014105:+22084 | Msa1353970:CDS |
| CGATCACCTTTCCTGTGAAT+GGG | 0.468197 | tig0014105:-19952 | None:intergenic |
| CTTGGAATGTTAAACATTGT+GGG | 0.475665 | tig0014105:+22028 | Msa1353970:CDS |
| TTTGAATCAGTTAATGGAGA+TGG | 0.481033 | tig0014105:+22278 | Msa1353970:intron |
| TTGGCATACCACAGGAAAGA+AGG | 0.492460 | tig0014105:+22599 | Msa1353970:intron |
| TCATGGATAATGAGAGAACT+TGG | 0.492868 | tig0014105:+22010 | Msa1353970:CDS |
| ATTTGATAATAATTTGAAAG+TGG | 0.495131 | tig0014105:+22083 | Msa1353970:CDS |
| TAGAGTTACCTTGCGGTGGA+AGG | 0.508812 | tig0014105:-22188 | None:intergenic |
| TCTGGAGTCTTGAGAAACAT+TGG | 0.510455 | tig0014105:-21147 | None:intergenic |
| ACTTGGAATGTTAAACATTG+TGG | 0.512866 | tig0014105:+22027 | Msa1353970:CDS |
| TGTGGGAGACATATTAGTAC+TGG | 0.514312 | tig0014105:+22045 | Msa1353970:CDS |
| AACTTGGTTGACGGTTCGGA+TGG | 0.514973 | tig0014105:-23055 | None:intergenic |
| GCTTTCACTAAGAAATATAG+TGG | 0.526593 | tig0014105:+21111 | Msa1353970:CDS |
| AGGTAACAATCTTAAAGAAA+CGG | 0.529659 | tig0014105:-20056 | None:intergenic |
| CGTTATCACCCTTCAAGTCA+TGG | 0.529744 | tig0014105:+21993 | Msa1353970:CDS |
| ACTCCAACCTGTACTCAACT+TGG | 0.532809 | tig0014105:-23071 | None:intergenic |
| TGTAGAGGAAAATAAATTGG+AGG | 0.533957 | tig0014105:+23099 | Msa1353970:CDS |
| GAGGAAAATAAATTGGAGGA+TGG | 0.537388 | tig0014105:+23103 | Msa1353970:CDS |
| TCGCCAATCTTACATGCCAC+AGG | 0.542280 | tig0014105:-23027 | None:intergenic |
| GACTTATGCCTCCCATTCAC+AGG | 0.545934 | tig0014105:+19941 | Msa1353970:CDS |
| CTCATTATCCATGACTTGAA+GGG | 0.556492 | tig0014105:-22001 | None:intergenic |
| AGAGTTACCTTGCGGTGGAA+GGG | 0.558988 | tig0014105:-22187 | None:intergenic |
| TCATGCGGATGTTTACAAAC+CGG | 0.561557 | tig0014105:+22743 | Msa1353970:CDS |
| GAAACATCAGCATGTGTCCA+TGG | 0.562484 | tig0014105:-21263 | None:intergenic |
| TCCATCTAGAATATTTGTTG+AGG | 0.564502 | tig0014105:-20076 | None:intergenic |
| CCGTCAACCAAGTTGAGTAC+AGG | 0.579549 | tig0014105:+23064 | Msa1353970:CDS |
| AGGTTGGAGTAAGTTTGTAG+AGG | 0.581140 | tig0014105:+23084 | Msa1353970:CDS |
| TGGTGATATTTGGATTCACA+AGG | 0.584168 | tig0014105:+21206 | Msa1353970:CDS |
| TTCACTTTGATAGTGAAATG+TGG | 0.584688 | tig0014105:-22714 | None:intergenic |
| ATTGGCGCAAGTGAAGATGT+TGG | 0.596112 | tig0014105:+21477 | Msa1353970:CDS |
| TTCCTATGCTAATAAATACA+TGG | 0.597714 | tig0014105:+21795 | Msa1353970:CDS |
| GGAGACATATTAGTACTGGA+TGG | 0.606406 | tig0014105:+22049 | Msa1353970:CDS |
| CACCATGTATTTATTAGCAT+AGG | 0.611640 | tig0014105:-21797 | None:intergenic |
| CAACCAAGTTGAGTACAGGT+TGG | 0.611957 | tig0014105:+23068 | Msa1353970:CDS |
| CAACTAGAGTTACCTTGCGG+TGG | 0.614291 | tig0014105:-22192 | None:intergenic |
| AAACATTCCCTTCCACCGCA+AGG | 0.615531 | tig0014105:+22180 | Msa1353970:CDS |
| ACACATTATTCTATAGACCA+TGG | 0.617727 | tig0014105:+21246 | Msa1353970:CDS |
| TATGTAAACCTCAAAATGAG+AGG | 0.618304 | tig0014105:-21298 | None:intergenic |
| ATGCCTCCCATTCACAGGAA+AGG | 0.618972 | tig0014105:+19946 | Msa1353970:CDS |
| TCACCTTTCCTGTGAATGGG+AGG | 0.620298 | tig0014105:-19949 | None:intergenic |
| CAAAGTGAAATCAAGTCATG+CGG | 0.640337 | tig0014105:+22728 | Msa1353970:CDS |
| AAGTATTTGAAGGAAAAGCA+AGG | 0.649480 | tig0014105:+21970 | Msa1353970:intron |
| TGTGAATGGGAGGCATAAGT+CGG | 0.653302 | tig0014105:-19939 | None:intergenic |
| GGTGATATTTGGATTCACAA+GGG | 0.673550 | tig0014105:+21207 | Msa1353970:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACTGTTATAATATTAAAAA+CGG | + | tig0014105:20624-20643 | Msa1353970:intron | 10.0% |
| !!! | ATGATTTTTTTTTTAGTATT+TGG | - | tig0014105:20670-20689 | None:intergenic | 10.0% |
| !! | ACAAAAATCAAAATATTAAT+TGG | - | tig0014105:21595-21614 | None:intergenic | 10.0% |
| !!! | TTAAGTTTTGATATTTGAAA+AGG | - | tig0014105:20244-20263 | None:intergenic | 15.0% |
| !! | TTTAATATTATAACAGTTAG+TGG | - | tig0014105:20622-20641 | None:intergenic | 15.0% |
| !! | ACTGTTATAATATTAAAAAC+GGG | + | tig0014105:20625-20644 | Msa1353970:intron | 15.0% |
| !!! | ATCACTTTTTTAATGTTAAA+TGG | + | tig0014105:20688-20707 | Msa1353970:intron | 15.0% |
| !!! | TAACTAAAATAATTTGTAAG+TGG | - | tig0014105:20786-20805 | None:intergenic | 15.0% |
| !!! | TTTAGGAATTTTTTTCAATT+TGG | - | tig0014105:21511-21530 | None:intergenic | 15.0% |
| !! | AATTTATTATACCTTTAACT+TGG | - | tig0014105:21539-21558 | None:intergenic | 15.0% |
| !!! | ATTTTTGAAGATGAATTATT+CGG | - | tig0014105:21706-21725 | None:intergenic | 15.0% |
| !!! | ATTTGATAATAATTTGAAAG+TGG | + | tig0014105:22083-22102 | Msa1353970:CDS | 15.0% |
| !!! | TTTGATAATAATTTGAAAGT+GGG | + | tig0014105:22084-22103 | Msa1353970:CDS | 15.0% |
| !! | CTTAAAAAAAAAATGGTTAG+TGG | - | tig0014105:20410-20429 | None:intergenic | 20.0% |
| !!! | CACTAACCATTTTTTTTTTA+AGG | + | tig0014105:20408-20427 | Msa1353970:intron | 20.0% |
| !! | ACTACTCCTTAAAAAAAAAA+TGG | - | tig0014105:20417-20436 | None:intergenic | 20.0% |
| !!! | TTTATCTATCTCTATTGTTT+TGG | - | tig0014105:20503-20522 | None:intergenic | 20.0% |
| !! | CTGTTATAATATTAAAAACG+GGG | + | tig0014105:20626-20645 | Msa1353970:intron | 20.0% |
| !! | GTTGCTTAAAAAAAGTTTAT+TGG | + | tig0014105:20732-20751 | Msa1353970:intron | 20.0% |
| !!! | AATTTGTTTGTTAATCAACA+AGG | - | tig0014105:20759-20778 | None:intergenic | 20.0% |
| !! | AGGTATAATAAATTCATGAT+TGG | + | tig0014105:21545-21564 | Msa1353970:intron | 20.0% |
| !!! | TTTTGAACTAAAGTATTTGA+AGG | + | tig0014105:21960-21979 | Msa1353970:intron | 20.0% |
| !!! | AATTGATTTTTTGCTTTTGT+TGG | + | tig0014105:22580-22599 | Msa1353970:intron | 20.0% |
| !! | AAACATAAACATGAGATAAA+TGG | - | tig0014105:22848-22867 | None:intergenic | 20.0% |
| ! | AGGTAACAATCTTAAAGAAA+CGG | - | tig0014105:20059-20078 | None:intergenic | 25.0% |
| ! | GAAAGAAAGAATTGTTACTA+GGG | - | tig0014105:20103-20122 | None:intergenic | 25.0% |
| ! | TGAAAGAAAGAATTGTTACT+AGG | - | tig0014105:20104-20123 | None:intergenic | 25.0% |
| ! | CTCTTCTTCATTCTTTAATT+TGG | + | tig0014105:20125-20144 | Msa1353970:intron | 25.0% |
| ! | TACTTACACAAAATGTAAGT+AGG | + | tig0014105:20161-20180 | Msa1353970:intron | 25.0% |
| !!! | TTTGTCTAGACTTTAAGATT+AGG | + | tig0014105:20196-20215 | Msa1353970:intron | 25.0% |
| !!! | TTGTCTAGACTTTAAGATTA+GGG | + | tig0014105:20197-20216 | Msa1353970:intron | 25.0% |
| !! | TCTCTAAAAATGTCAAATCT+TGG | + | tig0014105:20927-20946 | Msa1353970:intron | 25.0% |
| !! | CTCTAAAAATGTCAAATCTT+GGG | + | tig0014105:20928-20947 | Msa1353970:intron | 25.0% |
| ! | TCTAAAAATGTCAAATCTTG+GGG | + | tig0014105:20929-20948 | Msa1353970:intron | 25.0% |
| ! | AAATAAAAGTTTAGGAGAGT+TGG | - | tig0014105:20984-21003 | None:intergenic | 25.0% |
| ! | AAGAGAGAAATATACATATG+TGG | - | tig0014105:21025-21044 | None:intergenic | 25.0% |
| !!! | TATTTCTTAGTGAAAGCATT+TGG | - | tig0014105:21108-21127 | None:intergenic | 25.0% |
| !!! | CATATTTAACAAGAGTACTT+TGG | + | tig0014105:21317-21336 | Msa1353970:intron | 25.0% |
| !!! | GAACAAACTTGTTGAAAATT+TGG | + | tig0014105:21380-21399 | Msa1353970:CDS | 25.0% |
| ! | TTCCTATGCTAATAAATACA+TGG | + | tig0014105:21795-21814 | Msa1353970:CDS | 25.0% |
| !! | ACTTTAGTTCAAAATCTACT+GGG | - | tig0014105:21954-21973 | None:intergenic | 25.0% |
| !! | TACTTTAGTTCAAAATCTAC+TGG | - | tig0014105:21955-21974 | None:intergenic | 25.0% |
| !!! | AAAGTACTAATTTTTCGACT+AGG | + | tig0014105:22153-22172 | Msa1353970:CDS | 25.0% |
| ! | TTTGTTGATCTCAAGAATAA+TGG | + | tig0014105:22240-22259 | Msa1353970:intron | 25.0% |
| ! | TTAATGGAGATGGAATTAAT+TGG | + | tig0014105:22288-22307 | Msa1353970:CDS | 25.0% |
| ! | TAATGGAGATGGAATTAATT+GGG | + | tig0014105:22289-22308 | Msa1353970:CDS | 25.0% |
| !!! | TAGTTTTAAGTTCAACTCTA+GGG | - | tig0014105:22331-22350 | None:intergenic | 25.0% |
| !!! | ATAGTTTTAAGTTCAACTCT+AGG | - | tig0014105:22332-22351 | None:intergenic | 25.0% |
| ! | AAAACTATCATGTCACATAA+AGG | + | tig0014105:22344-22363 | Msa1353970:CDS | 25.0% |
| ! | GTAAATCTTTAACATTGTTG+TGG | + | tig0014105:22366-22385 | Msa1353970:intron | 25.0% |
| ! | CAACAGTATTTAGTACAAAA+CGG | + | tig0014105:22416-22435 | Msa1353970:intron | 25.0% |
| !! | TGCTTATATTTAAGATCAGA+GGG | - | tig0014105:22788-22807 | None:intergenic | 25.0% |
| !! | TTGCTTATATTTAAGATCAG+AGG | - | tig0014105:22789-22808 | None:intergenic | 25.0% |
| ! | AACATGAGATAAATGGTATT+TGG | - | tig0014105:22841-22860 | None:intergenic | 25.0% |
| ! | TACAGTTTAATAAAAACCTG+TGG | + | tig0014105:23011-23030 | Msa1353970:CDS | 25.0% |
| ! | GTTTGTAGAGGAAAATAAAT+TGG | + | tig0014105:23096-23115 | Msa1353970:CDS | 25.0% |
| ACCTCAACAAATATTCTAGA+TGG | + | tig0014105:20075-20094 | Msa1353970:CDS | 30.0% | |
| ! | TCCATCTAGAATATTTGTTG+AGG | - | tig0014105:20079-20098 | None:intergenic | 30.0% |
| AAGAGAAAGTCGTCATAAAA+TGG | + | tig0014105:20546-20565 | Msa1353970:intron | 30.0% | |
| !!! | ATTTGGTGTTCCTTTTGATT+AGG | - | tig0014105:20653-20672 | None:intergenic | 30.0% |
| ATCATATTACCCTATTACCA+AGG | - | tig0014105:20896-20915 | None:intergenic | 30.0% | |
| GCTTTCACTAAGAAATATAG+TGG | + | tig0014105:21111-21130 | Msa1353970:CDS | 30.0% | |
| ACACATTATTCTATAGACCA+TGG | + | tig0014105:21246-21265 | Msa1353970:CDS | 30.0% | |
| ! | TGAAAAAACCTCTCATTTTG+AGG | + | tig0014105:21290-21309 | Msa1353970:CDS | 30.0% |
| TATGTAAACCTCAAAATGAG+AGG | - | tig0014105:21301-21320 | None:intergenic | 30.0% | |
| CCAATTCTCAATTTCTTATG+TGG | - | tig0014105:21462-21481 | None:intergenic | 30.0% | |
| CCACATAAGAAATTGAGAAT+TGG | + | tig0014105:21459-21478 | Msa1353970:CDS | 30.0% | |
| CACCATGTATTTATTAGCAT+AGG | - | tig0014105:21800-21819 | None:intergenic | 30.0% | |
| AAGTATTTGAAGGAAAAGCA+AGG | + | tig0014105:21970-21989 | Msa1353970:intron | 30.0% | |
| ACTTGGAATGTTAAACATTG+TGG | + | tig0014105:22027-22046 | Msa1353970:CDS | 30.0% | |
| CTTGGAATGTTAAACATTGT+GGG | + | tig0014105:22028-22047 | Msa1353970:CDS | 30.0% | |
| ! | ATCTCCATTAACTGATTCAA+AGG | - | tig0014105:22279-22298 | None:intergenic | 30.0% |
| TTTGAATCAGTTAATGGAGA+TGG | + | tig0014105:22278-22297 | Msa1353970:intron | 30.0% | |
| ! | CGTTTTGTACTAAATACTGT+TGG | - | tig0014105:22418-22437 | None:intergenic | 30.0% |
| !! | TTCACTTTGATAGTGAAATG+TGG | - | tig0014105:22717-22736 | None:intergenic | 30.0% |
| ! | CTCATGTTTATGTTTGAAAC+TGG | + | tig0014105:22853-22872 | Msa1353970:intron | 30.0% |
| TAATTCATGTCATGCATTCT+TGG | + | tig0014105:22885-22904 | Msa1353970:intron | 30.0% | |
| TGTAGAGGAAAATAAATTGG+AGG | + | tig0014105:23099-23118 | Msa1353970:CDS | 30.0% | |
| TAGCAGAATGCATGTTTCTT+GGG | - | tig0014105:20035-20054 | None:intergenic | 35.0% | |
| ATAGCAGAATGCATGTTTCT+TGG | - | tig0014105:20036-20055 | None:intergenic | 35.0% | |
| !! | CTAGACTTTAAGATTAGGGT+CGG | + | tig0014105:20201-20220 | Msa1353970:intron | 35.0% |
| TAGGGTCGGTCTAATTAAAT+CGG | + | tig0014105:20215-20234 | Msa1353970:intron | 35.0% | |
| !! | TTTGGAATTTTCTGCAGTCA+TGG | - | tig0014105:21090-21109 | None:intergenic | 35.0% |
| AGACTCCAGATGACAAAAAA+TGG | + | tig0014105:21160-21179 | Msa1353970:CDS | 35.0% | |
| GACTCCAGATGACAAAAAAT+GGG | + | tig0014105:21161-21180 | Msa1353970:CDS | 35.0% | |
| !!! | ACTTCCCATTTTTTGTCATC+TGG | - | tig0014105:21168-21187 | None:intergenic | 35.0% |
| ! | GGAAGTACATTTGACCAAAA+AGG | + | tig0014105:21182-21201 | Msa1353970:CDS | 35.0% |
| GTACATTTGACCAAAAAGGA+TGG | + | tig0014105:21186-21205 | Msa1353970:CDS | 35.0% | |
| ! | CCAAATATCACCATCCTTTT+TGG | - | tig0014105:21199-21218 | None:intergenic | 35.0% |
| CCAAAAAGGATGGTGATATT+TGG | + | tig0014105:21196-21215 | Msa1353970:CDS | 35.0% | |
| TGGTGATATTTGGATTCACA+AGG | + | tig0014105:21206-21225 | Msa1353970:CDS | 35.0% | |
| GGTGATATTTGGATTCACAA+GGG | + | tig0014105:21207-21226 | Msa1353970:CDS | 35.0% | |
| ATATTTGGATTCACAAGGGT+TGG | + | tig0014105:21211-21230 | Msa1353970:CDS | 35.0% | |
| CTCAATTTCTTATGTGGTTG+AGG | - | tig0014105:21456-21475 | None:intergenic | 35.0% | |
| !! | CCTTTAACTTGGACAAGTTT+AGG | - | tig0014105:21528-21547 | None:intergenic | 35.0% |
| CCTAAACTTGTCCAAGTTAA+AGG | + | tig0014105:21525-21544 | Msa1353970:CDS | 35.0% | |
| CTTCACATTTAGGCATTTAG+TGG | - | tig0014105:21671-21690 | None:intergenic | 35.0% | |
| CTTGATCATGCTTCACATTT+AGG | - | tig0014105:21681-21700 | None:intergenic | 35.0% | |
| GTCATGACAACAGTGAAAAA+GGG | - | tig0014105:21772-21791 | None:intergenic | 35.0% | |
| CTCATTATCCATGACTTGAA+GGG | - | tig0014105:22004-22023 | None:intergenic | 35.0% | |
| TCTCATTATCCATGACTTGA+AGG | - | tig0014105:22005-22024 | None:intergenic | 35.0% | |
| TCATGGATAATGAGAGAACT+TGG | + | tig0014105:22010-22029 | Msa1353970:CDS | 35.0% | |
| AATCAACTAGAGTTACCTTG+CGG | - | tig0014105:22198-22217 | None:intergenic | 35.0% | |
| TCGTCCTTTGAATCAGTTAA+TGG | + | tig0014105:22272-22291 | Msa1353970:intron | 35.0% | |
| ! | AACATTGTTGTGGCTTCTTT+TGG | + | tig0014105:22376-22395 | Msa1353970:intron | 35.0% |
| !! | GAAATGTGGATTTTTCAGAG+TGG | - | tig0014105:22703-22722 | None:intergenic | 35.0% |
| CAAAGTGAAATCAAGTCATG+CGG | + | tig0014105:22728-22747 | Msa1353970:CDS | 35.0% | |
| GAGGAAAATAAATTGGAGGA+TGG | + | tig0014105:23103-23122 | Msa1353970:CDS | 35.0% | |
| TAGTGGAGCTCAACAAAAGT+TGG | - | tig0014105:20393-20412 | None:intergenic | 40.0% | |
| !! | CAGTTAGTGGTTAGTTTGAC+TGG | - | tig0014105:20609-20628 | None:intergenic | 40.0% |
| AAAACGGGGTCCTAATCAAA+AGG | + | tig0014105:20640-20659 | Msa1353970:intron | 40.0% | |
| ! | AGTGTGAGAACCTTGGTAAT+AGG | + | tig0014105:20883-20902 | Msa1353970:intron | 40.0% |
| ! | GTGTGAGAACCTTGGTAATA+GGG | + | tig0014105:20884-20903 | Msa1353970:intron | 40.0% |
| ! | TTTAGGAGAGTTGGTTCCTA+AGG | - | tig0014105:20975-20994 | None:intergenic | 40.0% |
| CTGGAGTCTTGAGAAACATT+GGG | - | tig0014105:21149-21168 | None:intergenic | 40.0% | |
| ! | TCTGGAGTCTTGAGAAACAT+TGG | - | tig0014105:21150-21169 | None:intergenic | 40.0% |
| ! | GATCTAGTCTTCTTGCATGT+AGG | - | tig0014105:21414-21433 | None:intergenic | 40.0% |
| TGCCATGTTCAATTTCTCAG+AGG | + | tig0014105:21633-21652 | Msa1353970:intron | 40.0% | |
| ! | CTCCTCTGAGAAATTGAACA+TGG | - | tig0014105:21638-21657 | None:intergenic | 40.0% |
| CGTCATGACAACAGTGAAAA+AGG | - | tig0014105:21773-21792 | None:intergenic | 40.0% | |
| CAAAATCTACTGGGATGTAC+TGG | - | tig0014105:21945-21964 | None:intergenic | 40.0% | |
| TGTGGGAGACATATTAGTAC+TGG | + | tig0014105:22045-22064 | Msa1353970:CDS | 40.0% | |
| ! | GGAGACATATTAGTACTGGA+TGG | + | tig0014105:22049-22068 | Msa1353970:CDS | 40.0% |
| GTTCAGTAGCAGCTATATAG+TGG | + | tig0014105:22440-22459 | Msa1353970:intron | 40.0% | |
| CCGTGATTCGCAAAAAATGA+CGG | - | tig0014105:22492-22511 | None:intergenic | 40.0% | |
| !!! | CCGTCATTTTTTGCGAATCA+CGG | + | tig0014105:22489-22508 | Msa1353970:intron | 40.0% |
| CAGAGTGGATGTGAATTGAT+TGG | - | tig0014105:22688-22707 | None:intergenic | 40.0% | |
| TCATGCGGATGTTTACAAAC+CGG | + | tig0014105:22743-22762 | Msa1353970:CDS | 40.0% | |
| AGAGTGTGTGTATTGCTTAC+CGG | - | tig0014105:22765-22784 | None:intergenic | 40.0% | |
| TGTGTATACGCTGCAGTTAA+CGG | - | tig0014105:22946-22965 | None:intergenic | 40.0% | |
| CTTGTGACACAAGTACTTCT+CGG | - | tig0014105:22978-22997 | None:intergenic | 40.0% | |
| AAACCTGTGGCATGTAAGAT+TGG | + | tig0014105:23024-23043 | Msa1353970:CDS | 40.0% | |
| AGGTTGGAGTAAGTTTGTAG+AGG | + | tig0014105:23084-23103 | Msa1353970:CDS | 40.0% | |
| ! | TGTGAATGGGAGGCATAAGT+CGG | - | tig0014105:19942-19961 | None:intergenic | 45.0% |
| CGATCACCTTTCCTGTGAAT+GGG | - | tig0014105:19955-19974 | None:intergenic | 45.0% | |
| TCGATCACCTTTCCTGTGAA+TGG | - | tig0014105:19956-19975 | None:intergenic | 45.0% | |
| AAGGTTCTCACACTGACAGT+TGG | - | tig0014105:20877-20896 | None:intergenic | 45.0% | |
| AACTGTCAGTGTGAGAACCT+TGG | + | tig0014105:20876-20895 | Msa1353970:intron | 45.0% | |
| ! | GTCAAATCTTGGGGCTTTTC+TGG | + | tig0014105:20938-20957 | Msa1353970:intron | 45.0% |
| GAAACATCAGCATGTGTCCA+TGG | - | tig0014105:21266-21285 | None:intergenic | 45.0% | |
| ATTGGCGCAAGTGAAGATGT+TGG | + | tig0014105:21477-21496 | Msa1353970:CDS | 45.0% | |
| CGTTATCACCCTTCAAGTCA+TGG | + | tig0014105:21993-22012 | Msa1353970:CDS | 45.0% | |
| ! | TGCTTTTGTTGGCATACCAC+AGG | + | tig0014105:22591-22610 | Msa1353970:intron | 45.0% |
| TTGGCATACCACAGGAAAGA+AGG | + | tig0014105:22599-22618 | Msa1353970:intron | 45.0% | |
| ! | TTGAGTTGCCTTCTTTCCTG+TGG | - | tig0014105:22610-22629 | None:intergenic | 45.0% |
| ACTCAACTTGGTTGACGGTT+CGG | - | tig0014105:23062-23081 | None:intergenic | 45.0% | |
| CCTGTACTCAACTTGGTTGA+CGG | - | tig0014105:23067-23086 | None:intergenic | 45.0% | |
| ! | CAACCAAGTTGAGTACAGGT+TGG | + | tig0014105:23068-23087 | Msa1353970:CDS | 45.0% |
| ACTCCAACCTGTACTCAACT+TGG | - | tig0014105:23074-23093 | None:intergenic | 45.0% | |
| !!! | TTTTTTATAAATAAAAGTTT+AGG | - | tig0014105:20992-21011 | None:intergenic | 5.0% |
| GACTTATGCCTCCCATTCAC+AGG | + | tig0014105:19941-19960 | Msa1353970:CDS | 50.0% | |
| ATGCCTCCCATTCACAGGAA+AGG | + | tig0014105:19946-19965 | Msa1353970:CDS | 50.0% | |
| TCACCTTTCCTGTGAATGGG+AGG | - | tig0014105:19952-19971 | None:intergenic | 50.0% | |
| AAACATTCCCTTCCACCGCA+AGG | + | tig0014105:22180-22199 | Msa1353970:CDS | 50.0% | |
| AGAGTTACCTTGCGGTGGAA+GGG | - | tig0014105:22190-22209 | None:intergenic | 50.0% | |
| TAGAGTTACCTTGCGGTGGA+AGG | - | tig0014105:22191-22210 | None:intergenic | 50.0% | |
| CAACTAGAGTTACCTTGCGG+TGG | - | tig0014105:22195-22214 | None:intergenic | 50.0% | |
| TCGCCAATCTTACATGCCAC+AGG | - | tig0014105:23030-23049 | None:intergenic | 50.0% | |
| ! | AACTTGGTTGACGGTTCGGA+TGG | - | tig0014105:23058-23077 | None:intergenic | 50.0% |
| ! | CCGTCAACCAAGTTGAGTAC+AGG | + | tig0014105:23064-23083 | Msa1353970:CDS | 50.0% |
| TCTGGACTCTCGCGAGCCTT+AGG | + | tig0014105:20956-20975 | Msa1353970:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0014105 | gene | 19925 | 23132 | 19925 | ID=Msa1353970;Name=Msa1353970 |
| tig0014105 | mRNA | 19925 | 23132 | 19925 | ID=Msa1353970-mRNA-1;Parent=Msa1353970;Name=Msa1353970-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0|0|1|0.71|0.5|8|0|467 |
| tig0014105 | exon | 19925 | 20104 | 19925 | ID=Msa1353970-mRNA-1:exon:8880;Parent=Msa1353970-mRNA-1 |
| tig0014105 | exon | 21099 | 21311 | 21099 | ID=Msa1353970-mRNA-1:exon:8881;Parent=Msa1353970-mRNA-1 |
| tig0014105 | exon | 21330 | 21546 | 21330 | ID=Msa1353970-mRNA-1:exon:8882;Parent=Msa1353970-mRNA-1 |
| tig0014105 | exon | 21653 | 21816 | 21653 | ID=Msa1353970-mRNA-1:exon:8883;Parent=Msa1353970-mRNA-1 |
| tig0014105 | exon | 21982 | 22201 | 21982 | ID=Msa1353970-mRNA-1:exon:8884;Parent=Msa1353970-mRNA-1 |
| tig0014105 | exon | 22288 | 22365 | 22288 | ID=Msa1353970-mRNA-1:exon:8885;Parent=Msa1353970-mRNA-1 |
| tig0014105 | exon | 22613 | 22764 | 22613 | ID=Msa1353970-mRNA-1:exon:8886;Parent=Msa1353970-mRNA-1 |
| tig0014105 | exon | 22956 | 23132 | 22956 | ID=Msa1353970-mRNA-1:exon:8887;Parent=Msa1353970-mRNA-1 |
| tig0014105 | CDS | 19925 | 20104 | 19925 | ID=Msa1353970-mRNA-1:cds;Parent=Msa1353970-mRNA-1 |
| tig0014105 | CDS | 21099 | 21311 | 21099 | ID=Msa1353970-mRNA-1:cds;Parent=Msa1353970-mRNA-1 |
| tig0014105 | CDS | 21330 | 21546 | 21330 | ID=Msa1353970-mRNA-1:cds;Parent=Msa1353970-mRNA-1 |
| tig0014105 | CDS | 21653 | 21816 | 21653 | ID=Msa1353970-mRNA-1:cds;Parent=Msa1353970-mRNA-1 |
| tig0014105 | CDS | 21982 | 22201 | 21982 | ID=Msa1353970-mRNA-1:cds;Parent=Msa1353970-mRNA-1 |
| tig0014105 | CDS | 22288 | 22365 | 22288 | ID=Msa1353970-mRNA-1:cds;Parent=Msa1353970-mRNA-1 |
| tig0014105 | CDS | 22613 | 22764 | 22613 | ID=Msa1353970-mRNA-1:cds;Parent=Msa1353970-mRNA-1 |
| tig0014105 | CDS | 22956 | 23132 | 22956 | ID=Msa1353970-mRNA-1:cds;Parent=Msa1353970-mRNA-1 |
| Gene Sequence |
| Protein sequence |
