Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1357140 | XP_024626902.1 | 60.241 | 332 | 78 | 5 | 1 | 323 | 1 | 287 | 1.97e-122 | 363 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1357140 | sp|Q9SQL0|JA2_SOLLC | 34.161 | 161 | 88 | 7 | 11 | 164 | 20 | 169 | 2.49e-11 | 67.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1357140 | G7I4G0 | 80.687 | 233 | 25 | 4 | 98 | 330 | 5 | 217 | 3.13e-120 | 354 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1357140 | TF | NAC |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1357140 | MtrunA17_Chr1g0168571 | 53.372 | 341 | 111 | 10 | 1 | 323 | 1 | 311 | 1.79e-104 | 309 |
| Msa1357140 | MtrunA17_Chr7g0274971 | 70.192 | 208 | 47 | 2 | 1 | 201 | 1 | 200 | 1.57e-96 | 285 |
| Msa1357140 | MtrunA17_Chr1g0174911 | 45.634 | 355 | 115 | 9 | 1 | 323 | 1 | 309 | 5.25e-90 | 272 |
| Msa1357140 | MtrunA17_Chr7g0263931 | 33.758 | 157 | 89 | 5 | 11 | 159 | 17 | 166 | 2.73e-17 | 81.3 |
| Msa1357140 | MtrunA17_Chr7g0214071 | 31.481 | 162 | 99 | 4 | 11 | 170 | 21 | 172 | 2.52e-15 | 74.7 |
| Msa1357140 | MtrunA17_Chr8g0385991 | 32.278 | 158 | 81 | 5 | 11 | 155 | 20 | 164 | 6.59e-13 | 67.4 |
| Msa1357140 | MtrunA17_Chr2g0326361 | 28.326 | 233 | 125 | 9 | 11 | 209 | 20 | 244 | 8.09e-12 | 65.1 |
| Msa1357140 | MtrunA17_Chr3g0139331 | 26.562 | 192 | 127 | 6 | 11 | 195 | 17 | 201 | 1.78e-11 | 64.3 |
| Msa1357140 | MtrunA17_Chr7g0252971 | 30.233 | 172 | 98 | 7 | 11 | 167 | 14 | 178 | 2.24e-11 | 63.9 |
| Msa1357140 | MtrunA17_Chr4g0047841 | 33.333 | 129 | 77 | 4 | 11 | 137 | 21 | 142 | 2.24e-11 | 63.9 |
| Msa1357140 | MtrunA17_Chr3g0130101 | 31.875 | 160 | 96 | 8 | 11 | 165 | 13 | 164 | 7.12e-11 | 62.8 |
| Msa1357140 | MtrunA17_Chr5g0417001 | 31.973 | 147 | 82 | 6 | 11 | 151 | 20 | 154 | 7.35e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1357140 | AT5G13180.1 | 33.333 | 147 | 85 | 5 | 11 | 154 | 20 | 156 | 1.15e-12 | 67.4 |
| Msa1357140 | AT5G62380.2 | 32.237 | 152 | 94 | 6 | 11 | 159 | 13 | 158 | 3.23e-12 | 67.0 |
| Msa1357140 | AT5G62380.1 | 32.237 | 152 | 94 | 6 | 11 | 159 | 13 | 158 | 3.23e-12 | 67.0 |
| Msa1357140 | AT2G24430.2 | 30.000 | 150 | 95 | 4 | 11 | 157 | 22 | 164 | 5.03e-12 | 66.2 |
| Msa1357140 | AT2G24430.1 | 30.000 | 150 | 95 | 4 | 11 | 157 | 22 | 164 | 5.03e-12 | 66.2 |
| Msa1357140 | AT3G10480.2 | 34.416 | 154 | 87 | 8 | 11 | 158 | 33 | 178 | 5.30e-12 | 67.0 |
| Msa1357140 | AT3G15510.1 | 27.660 | 188 | 107 | 7 | 11 | 182 | 23 | 197 | 1.79e-11 | 65.1 |
| Msa1357140 | AT2G46770.1 | 31.429 | 175 | 81 | 9 | 11 | 159 | 22 | 183 | 9.76e-11 | 62.8 |
Find 61 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAAGTTGATTTCTTGAATT+TGG | 0.087662 | tig0015929:+14354 | Msa1357140:intergenic |
| CCACCATTTGATTGACATTT+TGG | 0.106202 | tig0015929:+14891 | Msa1357140:intergenic |
| AGTGGCAGATTTCTTCTTTA+AGG | 0.196237 | tig0015929:+17462 | Msa1357140:intergenic |
| TAAAGAATCCTTGGGAGATT+TGG | 0.224375 | tig0015929:-17540 | Msa1357140:CDS |
| AATCTCCCAAGGATTCTTTA+TGG | 0.228130 | tig0015929:+17543 | Msa1357140:intergenic |
| CCAGAAAAGACCGTGGTTCT+TGG | 0.260366 | tig0015929:-14837 | Msa1357140:CDS |
| TAGCAATGTTTGCCAGGATT+TGG | 0.273310 | tig0015929:+14141 | Msa1357140:intergenic |
| AAACGTTTGATTCGTACTAT+TGG | 0.295360 | tig0015929:-17436 | Msa1357140:CDS |
| AAAGAATCCTTGGGAGATTT+GGG | 0.315347 | tig0015929:-17539 | Msa1357140:CDS |
| TGGAAATATCAAGATTGATT+TGG | 0.320688 | tig0015929:-14328 | Msa1357140:CDS |
| TTGATTCGTACTATTGGAAT+TGG | 0.345874 | tig0015929:-17430 | Msa1357140:CDS |
| TTCAAGAACATTGATATAGT+TGG | 0.354618 | tig0015929:+17582 | Msa1357140:intergenic |
| TCATCAAGTGAGAATTTGAT+TGG | 0.398760 | tig0015929:+16915 | Msa1357140:intergenic |
| TTGATACCATAAAGAATCCT+TGG | 0.401306 | tig0015929:-17549 | Msa1357140:CDS |
| ATCTTTGATTAACAATGCTT+CGG | 0.415664 | tig0015929:-17263 | Msa1357140:intron |
| TCAAGAACATTGATATAGTT+GGG | 0.434618 | tig0015929:+17583 | Msa1357140:intergenic |
| AGTATGGTAACTTACAGATA+TGG | 0.443956 | tig0015929:+16835 | Msa1357140:intergenic |
| GAACCAAAATGTCAATCAAA+TGG | 0.458333 | tig0015929:-14894 | Msa1357140:CDS |
| TCAAGAAATCAACTTGATAG+TGG | 0.460070 | tig0015929:-14348 | Msa1357140:CDS |
| GCAAGTTCTCACTCATATCA+TGG | 0.460346 | tig0015929:-17508 | Msa1357140:CDS |
| TAAACATAGCAATGTTTGCC+AGG | 0.462499 | tig0015929:+14135 | Msa1357140:intergenic |
| CAAGGAAAGACAGTTGTTCC+CGG | 0.469375 | tig0015929:-16872 | Msa1357140:CDS |
| ACAAATAATACTTACAATGT+TGG | 0.484031 | tig0015929:+14800 | Msa1357140:intergenic |
| TCTGCATAGAACATAATTGC+TGG | 0.484592 | tig0015929:+16991 | Msa1357140:intergenic |
| ATTGAAATGATTCCAAATCC+TGG | 0.485538 | tig0015929:-14153 | Msa1357140:CDS |
| ATGAAGATGGTGATATCTCT+TGG | 0.494027 | tig0015929:-14239 | Msa1357140:CDS |
| GGAGAAAGGTGGGAAATACT+TGG | 0.497376 | tig0015929:-14860 | Msa1357140:CDS |
| AATCAAATGGTGGACACAAA+AGG | 0.500915 | tig0015929:-14881 | Msa1357140:CDS |
| TGATACCATAAAGAATCCTT+GGG | 0.502233 | tig0015929:-17548 | Msa1357140:CDS |
| ATTATAAACAAAGATGAAGA+TGG | 0.538976 | tig0015929:-14252 | Msa1357140:CDS |
| TCTCACTTGATGAATAGCAT+TGG | 0.540753 | tig0015929:-16905 | Msa1357140:CDS |
| AGGAAGGTTAATCGAAGAGG+AGG | 0.555973 | tig0015929:-14178 | Msa1357140:CDS |
| AAAGAGACCGGCCAAACCCT+AGG | 0.557513 | tig0015929:-17367 | Msa1357140:CDS |
| TATCGTGAACTTTATTGTAG+AGG | 0.559597 | tig0015929:+17614 | Msa1357140:intergenic |
| CGAAGAAGTTCACCATCTGT+AGG | 0.564532 | tig0015929:+17643 | Msa1357140:intergenic |
| ACACTTCTCAAGATGGTGGA+TGG | 0.567014 | tig0015929:-17312 | Msa1357140:CDS |
| AGTATAGTTGACAAAGAGAC+CGG | 0.568733 | tig0015929:-17379 | Msa1357140:CDS |
| AAGAGTTACACTTCTCAAGA+TGG | 0.569646 | tig0015929:-17319 | Msa1357140:CDS |
| GAACTCATAGAGGCGAATGA+AGG | 0.573007 | tig0015929:-14198 | Msa1357140:CDS |
| TTTAGGACATCATTGTTTCG+AGG | 0.573378 | tig0015929:-14932 | Msa1357140:intron |
| AACTCTTCCCAAATCTCCCA+AGG | 0.573940 | tig0015929:+17532 | Msa1357140:intergenic |
| TTCTCACTCATATCATGGAA+AGG | 0.587566 | tig0015929:-17503 | Msa1357140:CDS |
| ACATTGATATAGTTGGGCAC+TGG | 0.596165 | tig0015929:+17589 | Msa1357140:intergenic |
| TGGTGGACACAAAAGGAGAA+AGG | 0.597243 | tig0015929:-14874 | Msa1357140:CDS |
| GACAGTTGTTCCCGGACCTG+CGG | 0.611545 | tig0015929:-16864 | Msa1357140:CDS |
| TGTTAATCAAAGATATGTGA+AGG | 0.617441 | tig0015929:+17272 | Msa1357140:intergenic |
| CCAAAATGTCAATCAAATGG+TGG | 0.617859 | tig0015929:-14891 | Msa1357140:CDS |
| TCATAGAGGCGAATGAAGGA+AGG | 0.619859 | tig0015929:-14194 | Msa1357140:CDS |
| GGACACAAAAGGAGAAAGGT+GGG | 0.621854 | tig0015929:-14870 | Msa1357140:CDS |
| GTACTATTGGAATTGGTACG+TGG | 0.623666 | tig0015929:-17423 | Msa1357140:CDS |
| AGTTACACTTCTCAAGATGG+TGG | 0.626247 | tig0015929:-17316 | Msa1357140:CDS |
| AGCATTGGACAAGATAAGCA+AGG | 0.636949 | tig0015929:-16890 | Msa1357140:CDS |
| TGGACACAAAAGGAGAAAGG+TGG | 0.644978 | tig0015929:-14871 | Msa1357140:CDS |
| AAGTGTAACTCTTCTCAAAG+CGG | 0.648652 | tig0015929:+17329 | Msa1357140:intergenic |
| TACTATTGGAATTGGTACGT+GGG | 0.648722 | tig0015929:-17422 | Msa1357140:CDS |
| TGAAGGAAGGTTAATCGAAG+AGG | 0.648808 | tig0015929:-14181 | Msa1357140:CDS |
| ACGAATCAAACGTTTACTAG+TGG | 0.651740 | tig0015929:+17444 | Msa1357140:intergenic |
| ACGTGGGAAGCTGAAGACAC+CGG | 0.664319 | tig0015929:-17406 | Msa1357140:CDS |
| AGCTTTAAGTCCAAGAACCA+CGG | 0.675233 | tig0015929:+14827 | Msa1357140:intergenic |
| TAAAAGTGCCAATACGACAG+AGG | 0.688062 | tig0015929:-14304 | Msa1357140:CDS |
| TACTTGGCCAGAAAAGACCG+TGG | 0.736153 | tig0015929:-14844 | Msa1357140:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AACAATATTTTTTATGAAAT+TGG | - | tig0015929:15204-15223 | Msa1357140:intron | 10.0% |
| !!! | ATATTTTTTTGTTATATTGT+TGG | + | tig0015929:15595-15614 | Msa1357140:intergenic | 10.0% |
| !!! | AAATTGTTTAAAAGTATAAT+TGG | - | tig0015929:15669-15688 | Msa1357140:intron | 10.0% |
| !!! | AATTGTTTAAAAGTATAATT+GGG | - | tig0015929:15670-15689 | Msa1357140:intron | 10.0% |
| !!! | AAAAAAAATAGAAATTTGTT+CGG | + | tig0015929:16149-16168 | Msa1357140:intergenic | 10.0% |
| !! | ACTAATTAATACTATTAATT+TGG | + | tig0015929:16316-16335 | Msa1357140:intergenic | 10.0% |
| !! | ATACTAAGTTTATACTAATT+AGG | - | tig0015929:14703-14722 | Msa1357140:intron | 15.0% |
| !! | TACTAAGTTTATACTAATTA+GGG | - | tig0015929:14704-14723 | Msa1357140:intron | 15.0% |
| !!! | ATTCTTTTTTCTGTATTTTT+TGG | + | tig0015929:14872-14891 | Msa1357140:intergenic | 15.0% |
| !!! | TAGATATAGATATAGATTTT+TGG | - | tig0015929:15946-15965 | Msa1357140:intron | 15.0% |
| !! | TAGATTATTATTATTGTTGT+TGG | - | tig0015929:16066-16085 | Msa1357140:intron | 15.0% |
| !!! | TAACAAAAAACAAATTTTGT+TGG | - | tig0015929:16273-16292 | Msa1357140:intron | 15.0% |
| !! | TGGGTAAAAAAATTAAAATT+CGG | + | tig0015929:16521-16540 | Msa1357140:intergenic | 15.0% |
| !! | ATATAATCAAATTCAAATCT+GGG | + | tig0015929:16540-16559 | Msa1357140:intergenic | 15.0% |
| !! | AATTATCATTACATATAGAA+AGG | + | tig0015929:16823-16842 | Msa1357140:intergenic | 15.0% |
| !! | GTTAAAATAGATCAAATAAA+TGG | + | tig0015929:17261-17280 | Msa1357140:intergenic | 15.0% |
| !! | AAAAATAATTCATGAGGTAA+GGG | + | tig0015929:14657-14676 | Msa1357140:intergenic | 20.0% |
| !! | AAAAAATAATTCATGAGGTA+AGG | + | tig0015929:14658-14677 | Msa1357140:intergenic | 20.0% |
| !!! | TACCTCATGAATTATTTTTT+TGG | - | tig0015929:14658-14677 | Msa1357140:intron | 20.0% |
| !! | AACCAAAAAAATAATTCATG+AGG | + | tig0015929:14663-14682 | Msa1357140:intergenic | 20.0% |
| !! | TAAACTTAGTATTTAAACGT+TGG | + | tig0015929:14695-14714 | Msa1357140:intergenic | 20.0% |
| !!! | TTTTCTGTATTTTTTGGATT+GGG | + | tig0015929:14866-14885 | Msa1357140:intergenic | 20.0% |
| !!! | TTTTTCTGTATTTTTTGGAT+TGG | + | tig0015929:14867-14886 | Msa1357140:intergenic | 20.0% |
| !! | TTACCATACTATAATTTGAT+TGG | - | tig0015929:14991-15010 | Msa1357140:intron | 20.0% |
| !! | ATCAAGCTAACATAAAAAAA+GGG | + | tig0015929:15155-15174 | Msa1357140:intergenic | 20.0% |
| !! | AATCAAGCTAACATAAAAAA+AGG | + | tig0015929:15156-15175 | Msa1357140:intergenic | 20.0% |
| !!! | GAAATTGGTTTTGATTAAAA+AGG | - | tig0015929:15219-15238 | Msa1357140:intron | 20.0% |
| !!! | GAAAGAAAAAAAAGATTTTG+AGG | + | tig0015929:15365-15384 | Msa1357140:intergenic | 20.0% |
| !! | TATATATATTAGCGAAAAGT+CGG | - | tig0015929:15406-15425 | Msa1357140:intron | 20.0% |
| !!! | ATTATTATTATTGTTGTTGG+TGG | - | tig0015929:16069-16088 | Msa1357140:intron | 20.0% |
| !! | AAAATTGCTAGCAATAATAA+TGG | + | tig0015929:16236-16255 | Msa1357140:intergenic | 20.0% |
| !! | CTAAATCTATATACTTGAAA+AGG | - | tig0015929:16461-16480 | Msa1357140:intron | 20.0% |
| !! | GATATAATCAAATTCAAATC+TGG | + | tig0015929:16541-16560 | Msa1357140:intergenic | 20.0% |
| !! | GATTTGAATTTGATTATATC+CGG | - | tig0015929:16541-16560 | Msa1357140:intron | 20.0% |
| !! | TCAACTAAAAAGAGAAAATT+TGG | - | tig0015929:16635-16654 | Msa1357140:intron | 20.0% |
| !! | ACAAATAATACTTACAATGT+TGG | + | tig0015929:17016-17035 | Msa1357140:intergenic | 20.0% |
| !!! | ATGTGTTATTTATTTGTTGA+AGG | - | tig0015929:17050-17069 | Msa1357140:intron | 20.0% |
| !! | ATTGTTTGAATAATGTGTTT+GGG | + | tig0015929:17336-17355 | Msa1357140:intergenic | 20.0% |
| !! | ATTATAAACAAAGATGAAGA+TGG | - | tig0015929:17561-17580 | Msa1357140:CDS | 20.0% |
| ! | AAAAATTTCAAACCTACAGA+TGG | - | tig0015929:14158-14177 | Msa1357140:CDS | 25.0% |
| ! | TCAAGAACATTGATATAGTT+GGG | + | tig0015929:14233-14252 | Msa1357140:intergenic | 25.0% |
| ! | TTCAAGAACATTGATATAGT+TGG | + | tig0015929:14234-14253 | Msa1357140:intergenic | 25.0% |
| !!! | TTTGTCAACTATACTTTTTC+CGG | + | tig0015929:14429-14448 | Msa1357140:intergenic | 25.0% |
| ! | TGTTAATCAAAGATATGTGA+AGG | + | tig0015929:14544-14563 | Msa1357140:intergenic | 25.0% |
| ! | ATCTTTGATTAACAATGCTT+CGG | - | tig0015929:14550-14569 | Msa1357140:intron | 25.0% |
| !!! | ACTAATTAGGGTTTATTTTC+TGG | - | tig0015929:14716-14735 | Msa1357140:intron | 25.0% |
| !! | TAAAAGTGACAATTTTTCCT+TGG | - | tig0015929:14755-14774 | Msa1357140:intron | 25.0% |
| ! | TAGCCAATCAAATTATAGTA+TGG | + | tig0015929:14997-15016 | Msa1357140:intergenic | 25.0% |
| !!! | TAAAGTGATTTTTTTGTGTG+TGG | - | tig0015929:15051-15070 | Msa1357140:intron | 25.0% |
| !!! | AAAGTGATTTTTTTGTGTGT+GGG | - | tig0015929:15052-15071 | Msa1357140:intron | 25.0% |
| ! | AAGAGAAAAAACAAATACGA+CGG | + | tig0015929:15132-15151 | Msa1357140:intergenic | 25.0% |
| !!! | TTGGTTTTGATTAAAAAGGA+TGG | - | tig0015929:15223-15242 | Msa1357140:intron | 25.0% |
| !! | CTTAAACAAGCTTGTTTAAA+AGG | + | tig0015929:15318-15337 | Msa1357140:intergenic | 25.0% |
| !!! | AGAAAAAAAAGATTTTGAGG+TGG | + | tig0015929:15362-15381 | Msa1357140:intergenic | 25.0% |
| ! | CAATAAAAAGAGTGGAAAAA+TGG | + | tig0015929:15444-15463 | Msa1357140:intergenic | 25.0% |
| !! | TTTTTCCACTCTTTTTATTG+CGG | - | tig0015929:15444-15463 | Msa1357140:intron | 25.0% |
| ! | GTCATTGAAATAGATAATCA+TGG | + | tig0015929:15571-15590 | Msa1357140:intergenic | 25.0% |
| !!! | TAGTTTGTTACCCTTTTTAA+GGG | - | tig0015929:15725-15744 | Msa1357140:intron | 25.0% |
| ! | TTTCCTTTATCCCTTAAAAA+GGG | + | tig0015929:15738-15757 | Msa1357140:intergenic | 25.0% |
| !! | TTTTCCTTTATCCCTTAAAA+AGG | + | tig0015929:15739-15758 | Msa1357140:intergenic | 25.0% |
| !!! | GTTTCTTTGTGATTTTTTTG+TGG | - | tig0015929:16109-16128 | Msa1357140:intron | 25.0% |
| ! | ATGAAAACGATTAAATCTGA+TGG | - | tig0015929:16438-16457 | Msa1357140:intron | 25.0% |
| ! | TAACATTTGAACAAGATTAC+CGG | + | tig0015929:16563-16582 | Msa1357140:intergenic | 25.0% |
| !! | TTTGGAACAAGAATGAAATT+TGG | - | tig0015929:16653-16672 | Msa1357140:intron | 25.0% |
| !! | CTTTTGCATTCTTGATTTTT+AGG | - | tig0015929:16864-16883 | Msa1357140:CDS | 25.0% |
| ! | AATATATCAACAAAATCCCT+GGG | + | tig0015929:17078-17097 | Msa1357140:intergenic | 25.0% |
| ! | TAATATATCAACAAAATCCC+TGG | + | tig0015929:17079-17098 | Msa1357140:intergenic | 25.0% |
| ! | ATTCACAAATGATCATATGT+AGG | - | tig0015929:17108-17127 | Msa1357140:intron | 25.0% |
| !!! | TACTTTTTAAGGTGAATAAG+TGG | + | tig0015929:17229-17248 | Msa1357140:intergenic | 25.0% |
| !!! | GGACTATGATTTACTTTTTA+AGG | + | tig0015929:17240-17259 | Msa1357140:intergenic | 25.0% |
| ! | CATTGTTTGAATAATGTGTT+TGG | + | tig0015929:17337-17356 | Msa1357140:intergenic | 25.0% |
| !! | AATTTGGATCAATATTTTCC+TGG | + | tig0015929:17446-17465 | Msa1357140:intergenic | 25.0% |
| !!! | TCAAGTTGATTTCTTGAATT+TGG | + | tig0015929:17462-17481 | Msa1357140:intergenic | 25.0% |
| ! | TGGAAATATCAAGATTGATT+TGG | - | tig0015929:17485-17504 | Msa1357140:CDS | 25.0% |
| ! | GAAAAATCTAACAAAGAAGA+TGG | - | tig0015929:17531-17550 | Msa1357140:CDS | 25.0% |
| TATCGTGAACTTTATTGTAG+AGG | + | tig0015929:14202-14221 | Msa1357140:intergenic | 30.0% | |
| TTGATACCATAAAGAATCCT+TGG | - | tig0015929:14264-14283 | Msa1357140:CDS | 30.0% | |
| TGATACCATAAAGAATCCTT+GGG | - | tig0015929:14265-14284 | Msa1357140:CDS | 30.0% | |
| ! | AAACGTTTGATTCGTACTAT+TGG | - | tig0015929:14377-14396 | Msa1357140:intron | 30.0% |
| ! | TTGATTCGTACTATTGGAAT+TGG | - | tig0015929:14383-14402 | Msa1357140:intron | 30.0% |
| !!! | GAAACGTTTTTTTAGACCTA+GGG | + | tig0015929:14465-14484 | Msa1357140:intergenic | 30.0% |
| TCATCAAGTGAGAATTTGAT+TGG | + | tig0015929:14901-14920 | Msa1357140:intergenic | 30.0% | |
| AGTATGGTAACTTACAGATA+TGG | + | tig0015929:14981-15000 | Msa1357140:intergenic | 30.0% | |
| AGAGAAAAAACAAATACGAC+GGG | + | tig0015929:15131-15150 | Msa1357140:intergenic | 30.0% | |
| !!! | CTAGTTTGTTACCCTTTTTA+AGG | - | tig0015929:15724-15743 | Msa1357140:intron | 30.0% |
| !! | TTACCCTTTTTAAGGGATAA+AGG | - | tig0015929:15732-15751 | Msa1357140:intron | 30.0% |
| GCTATTTGTATTGAAAGTTG+AGG | - | tig0015929:15842-15861 | Msa1357140:intron | 30.0% | |
| ! | TAACATGTTTTGCCTCTTTT+GGG | + | tig0015929:15894-15913 | Msa1357140:intergenic | 30.0% |
| ! | ATAACATGTTTTGCCTCTTT+TGG | + | tig0015929:15895-15914 | Msa1357140:intergenic | 30.0% |
| ! | ATTATTATTGTTGTTGGTGG+TGG | - | tig0015929:16072-16091 | Msa1357140:intron | 30.0% |
| TTTATCATGTTCAACTTTGC+TGG | + | tig0015929:16708-16727 | Msa1357140:intergenic | 30.0% | |
| GAACCAAAATGTCAATCAAA+TGG | - | tig0015929:16919-16938 | Msa1357140:CDS | 30.0% | |
| GCATTGTTATATGAAGATGT+CGG | - | tig0015929:17185-17204 | Msa1357140:intron | 30.0% | |
| TCAAGAAATCAACTTGATAG+TGG | - | tig0015929:17465-17484 | Msa1357140:CDS | 30.0% | |
| ATTGAAATGATTCCAAATCC+TGG | - | tig0015929:17660-17679 | Msa1357140:CDS | 30.0% | |
| AATCTCCCAAGGATTCTTTA+TGG | + | tig0015929:14273-14292 | Msa1357140:intergenic | 35.0% | |
| TAAAGAATCCTTGGGAGATT+TGG | - | tig0015929:14273-14292 | Msa1357140:CDS | 35.0% | |
| AAAGAATCCTTGGGAGATTT+GGG | - | tig0015929:14274-14293 | Msa1357140:CDS | 35.0% | |
| TTCTCACTCATATCATGGAA+AGG | - | tig0015929:14310-14329 | Msa1357140:CDS | 35.0% | |
| AGTGGCAGATTTCTTCTTTA+AGG | + | tig0015929:14354-14373 | Msa1357140:intergenic | 35.0% | |
| ACGAATCAAACGTTTACTAG+TGG | + | tig0015929:14372-14391 | Msa1357140:intergenic | 35.0% | |
| TACTATTGGAATTGGTACGT+GGG | - | tig0015929:14391-14410 | Msa1357140:intron | 35.0% | |
| AGTATAGTTGACAAAGAGAC+CGG | - | tig0015929:14434-14453 | Msa1357140:intron | 35.0% | |
| !!! | GTTTTTTTAGACCTAGGGTT+TGG | + | tig0015929:14460-14479 | Msa1357140:intergenic | 35.0% |
| !!! | GGAAACGTTTTTTTAGACCT+AGG | + | tig0015929:14466-14485 | Msa1357140:intergenic | 35.0% |
| AAGTGTAACTCTTCTCAAAG+CGG | + | tig0015929:14487-14506 | Msa1357140:intergenic | 35.0% | |
| AAGAGTTACACTTCTCAAGA+TGG | - | tig0015929:14494-14513 | Msa1357140:intron | 35.0% | |
| AAGGGTGGTCACTATTTAAT+AGG | + | tig0015929:14639-14658 | Msa1357140:intergenic | 35.0% | |
| AATAATTCATGAGGTAAGGG+TGG | + | tig0015929:14654-14673 | Msa1357140:intergenic | 35.0% | |
| TAAATGTGTGCACAATACCA+AGG | + | tig0015929:14775-14794 | Msa1357140:intergenic | 35.0% | |
| TCTGCATAGAACATAATTGC+TGG | + | tig0015929:14825-14844 | Msa1357140:intergenic | 35.0% | |
| TCTCACTTGATGAATAGCAT+TGG | - | tig0015929:14908-14927 | Msa1357140:CDS | 35.0% | |
| GAGAAAAAACAAATACGACG+GGG | + | tig0015929:15130-15149 | Msa1357140:intergenic | 35.0% | |
| ! | TGCTGGTCAGCTAAAAATTT+TGG | + | tig0015929:16691-16710 | Msa1357140:intergenic | 35.0% |
| ! | TTTAGGACATCATTGTTTCG+AGG | - | tig0015929:16881-16900 | Msa1357140:CDS | 35.0% |
| ! | CCACCATTTGATTGACATTT+TGG | + | tig0015929:16925-16944 | Msa1357140:intergenic | 35.0% |
| CCAAAATGTCAATCAAATGG+TGG | - | tig0015929:16922-16941 | Msa1357140:CDS | 35.0% | |
| !! | AATCAAATGGTGGACACAAA+AGG | - | tig0015929:16932-16951 | Msa1357140:CDS | 35.0% |
| ! | TTTATTTGTTGAAGGAACCC+AGG | - | tig0015929:17058-17077 | Msa1357140:intron | 35.0% |
| ! | TTATTTGTTGAAGGAACCCA+GGG | - | tig0015929:17059-17078 | Msa1357140:intron | 35.0% |
| TACCAAGTGATATATGCACA+CGG | + | tig0015929:17157-17176 | Msa1357140:intergenic | 35.0% | |
| ! | AATGCAGGAGCACAATAATA+AGG | + | tig0015929:17415-17434 | Msa1357140:intergenic | 35.0% |
| ! | AGATTTTTCCTCTGTCGTAT+TGG | + | tig0015929:17520-17539 | Msa1357140:intergenic | 35.0% |
| ATGAAGATGGTGATATCTCT+TGG | - | tig0015929:17574-17593 | Msa1357140:CDS | 35.0% | |
| TAAACATAGCAATGTTTGCC+AGG | + | tig0015929:17681-17700 | Msa1357140:intergenic | 35.0% | |
| ACATTGATATAGTTGGGCAC+TGG | + | tig0015929:14227-14246 | Msa1357140:intergenic | 40.0% | |
| GCAAGTTCTCACTCATATCA+TGG | - | tig0015929:14305-14324 | Msa1357140:CDS | 40.0% | |
| GTACTATTGGAATTGGTACG+TGG | - | tig0015929:14390-14409 | Msa1357140:intron | 40.0% | |
| AGTTACACTTCTCAAGATGG+TGG | - | tig0015929:14497-14516 | Msa1357140:intron | 40.0% | |
| !!! | CTGCTTTTGCGTTTTTTTGC+AGG | - | tig0015929:14799-14818 | Msa1357140:intron | 40.0% |
| ! | AGCATTGGACAAGATAAGCA+AGG | - | tig0015929:14923-14942 | Msa1357140:CDS | 40.0% |
| CATCACCGCAATAAAAAGAG+TGG | + | tig0015929:15452-15471 | Msa1357140:intergenic | 40.0% | |
| AGAAAATGTCAGCCCAAAAG+AGG | - | tig0015929:15879-15898 | Msa1357140:intron | 40.0% | |
| !! | ATTATTGTTGTTGGTGGTGG+TGG | - | tig0015929:16075-16094 | Msa1357140:intron | 40.0% |
| !! | AGCTTTAAGTCCAAGAACCA+CGG | + | tig0015929:16989-17008 | Msa1357140:intergenic | 40.0% |
| ACCAAGTGATATATGCACAC+GGG | + | tig0015929:17156-17175 | Msa1357140:intergenic | 40.0% | |
| TTCCTGGAAAATGAGAATGC+AGG | + | tig0015929:17430-17449 | Msa1357140:intergenic | 40.0% | |
| !! | TAAAAGTGCCAATACGACAG+AGG | - | tig0015929:17509-17528 | Msa1357140:CDS | 40.0% |
| ! | TTTTGCAAGGGAACTCATAG+AGG | - | tig0015929:17605-17624 | Msa1357140:CDS | 40.0% |
| TGAAGGAAGGTTAATCGAAG+AGG | - | tig0015929:17632-17651 | Msa1357140:CDS | 40.0% | |
| TAGCAATGTTTGCCAGGATT+TGG | + | tig0015929:17675-17694 | Msa1357140:intergenic | 40.0% | |
| CGAAGAAGTTCACCATCTGT+AGG | + | tig0015929:14173-14192 | Msa1357140:intergenic | 45.0% | |
| AACTCTTCCCAAATCTCCCA+AGG | + | tig0015929:14284-14303 | Msa1357140:intergenic | 45.0% | |
| ! | TTTTAGACCTAGGGTTTGGC+CGG | + | tig0015929:14456-14475 | Msa1357140:intergenic | 45.0% |
| !! | ACACTTCTCAAGATGGTGGA+TGG | - | tig0015929:14501-14520 | Msa1357140:intron | 45.0% |
| CAAGGAAAGACAGTTGTTCC+CGG | - | tig0015929:14941-14960 | Msa1357140:intron | 45.0% | |
| ! | TGGTGGACACAAAAGGAGAA+AGG | - | tig0015929:16939-16958 | Msa1357140:CDS | 45.0% |
| TGGACACAAAAGGAGAAAGG+TGG | - | tig0015929:16942-16961 | Msa1357140:CDS | 45.0% | |
| GGACACAAAAGGAGAAAGGT+GGG | - | tig0015929:16943-16962 | Msa1357140:CDS | 45.0% | |
| GGAGAAAGGTGGGAAATACT+TGG | - | tig0015929:16953-16972 | Msa1357140:CDS | 45.0% | |
| CCAAGTGATATATGCACACG+GGG | + | tig0015929:17155-17174 | Msa1357140:intergenic | 45.0% | |
| ! | CTCCTGCATTCTCATTTTCC+AGG | - | tig0015929:17425-17444 | Msa1357140:CDS | 45.0% |
| ! | TTGGCCTGAGCTTTTTGCAA+GGG | - | tig0015929:17593-17612 | Msa1357140:CDS | 45.0% |
| AGTTCCCTTGCAAAAAGCTC+AGG | + | tig0015929:17600-17619 | Msa1357140:intergenic | 45.0% | |
| GAACTCATAGAGGCGAATGA+AGG | - | tig0015929:17615-17634 | Msa1357140:CDS | 45.0% | |
| TCATAGAGGCGAATGAAGGA+AGG | - | tig0015929:17619-17638 | Msa1357140:CDS | 45.0% | |
| AGGAAGGTTAATCGAAGAGG+AGG | - | tig0015929:17635-17654 | Msa1357140:CDS | 45.0% | |
| !!! | GTTTTATTTATTTATTTTTT+TGG | - | tig0015929:16334-16353 | Msa1357140:intron | 5.0% |
| !!! | TTTTGTATTTAAATAAAATT+TGG | + | tig0015929:16602-16621 | Msa1357140:intergenic | 5.0% |
| !!! | TTTTATTTAAATACAAAATT+TGG | - | tig0015929:16604-16623 | Msa1357140:intron | 5.0% |
| !! | AAAAAAAAAAAAAAAAGATT+TGG | + | tig0015929:16737-16756 | Msa1357140:intergenic | 5.0% |
| ! | ACAGATATGGCGTTTTCCGC+AGG | + | tig0015929:14968-14987 | Msa1357140:intergenic | 50.0% |
| !! | ATTGTTGTTGGTGGTGGTGG+TGG | - | tig0015929:16078-16097 | Msa1357140:intron | 50.0% |
| TACTTGGCCAGAAAAGACCG+TGG | - | tig0015929:16969-16988 | Msa1357140:CDS | 50.0% | |
| ! | CCAAGAACCACGGTCTTTTC+TGG | + | tig0015929:16979-16998 | Msa1357140:intergenic | 50.0% |
| CCAGAAAAGACCGTGGTTCT+TGG | - | tig0015929:16976-16995 | Msa1357140:CDS | 50.0% | |
| CCCCGTGTGCATATATCACT+TGG | - | tig0015929:17152-17171 | Msa1357140:intron | 50.0% | |
| ! | CTTGGCCTGAGCTTTTTGCA+AGG | - | tig0015929:17592-17611 | Msa1357140:CDS | 50.0% |
| ACGTGGGAAGCTGAAGACAC+CGG | - | tig0015929:14407-14426 | Msa1357140:intron | 55.0% | |
| AAAGAGACCGGCCAAACCCT+AGG | - | tig0015929:14446-14465 | Msa1357140:intron | 55.0% | |
| ! | TATGGCGTTTTCCGCAGGTC+CGG | + | tig0015929:14963-14982 | Msa1357140:intergenic | 55.0% |
| GACAGTTGTTCCCGGACCTG+CGG | - | tig0015929:14949-14968 | Msa1357140:intron | 60.0% | |
| ! | ATGGCGTTTTCCGCAGGTCC+GGG | + | tig0015929:14962-14981 | Msa1357140:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0015929 | gene | 14134 | 17701 | 14134 | ID=Msa1357140;Name=Msa1357140 |
| tig0015929 | mRNA | 14134 | 17701 | 14134 | ID=Msa1357140-mRNA-1;Parent=Msa1357140;Name=Msa1357140-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0|0|1|1|1|4|0|330 |
| tig0015929 | exon | 17264 | 17701 | 17264 | ID=Msa1357140-mRNA-1:exon:10274;Parent=Msa1357140-mRNA-1 |
| tig0015929 | exon | 16850 | 17014 | 16850 | ID=Msa1357140-mRNA-1:exon:10273;Parent=Msa1357140-mRNA-1 |
| tig0015929 | exon | 14815 | 14949 | 14815 | ID=Msa1357140-mRNA-1:exon:10272;Parent=Msa1357140-mRNA-1 |
| tig0015929 | exon | 14134 | 14388 | 14134 | ID=Msa1357140-mRNA-1:exon:10271;Parent=Msa1357140-mRNA-1 |
| tig0015929 | CDS | 17264 | 17701 | 17264 | ID=Msa1357140-mRNA-1:cds;Parent=Msa1357140-mRNA-1 |
| tig0015929 | CDS | 16850 | 17014 | 16850 | ID=Msa1357140-mRNA-1:cds;Parent=Msa1357140-mRNA-1 |
| tig0015929 | CDS | 14815 | 14949 | 14815 | ID=Msa1357140-mRNA-1:cds;Parent=Msa1357140-mRNA-1 |
| tig0015929 | CDS | 14134 | 14388 | 14134 | ID=Msa1357140-mRNA-1:cds;Parent=Msa1357140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
