Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1357500 | XP_003601983.1 | 95.105 | 429 | 20 | 1 | 1 | 429 | 1 | 428 | 0.0 | 785 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1357500 | sp|Q9FJQ5|EIL5_ARATH | 61.679 | 274 | 87 | 1 | 27 | 282 | 33 | 306 | 6.53e-119 | 360 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1357500 | G7J4B1 | 95.105 | 429 | 20 | 1 | 1 | 429 | 1 | 428 | 0.0 | 785 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1357500 | TF | EIL |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1357500 | MtrunA17_Chr3g0124291 | 95.105 | 429 | 20 | 1 | 1 | 429 | 1 | 428 | 0.0 | 785 |
| Msa1357500 | MtrunA17_Chr8g0382561 | 52.477 | 444 | 172 | 7 | 15 | 423 | 5 | 444 | 2.06e-147 | 426 |
| Msa1357500 | MtrunA17_Chr5g0440591 | 56.869 | 313 | 111 | 7 | 22 | 326 | 39 | 335 | 1.55e-113 | 345 |
| Msa1357500 | MtrunA17_Chr3g0118361 | 57.718 | 298 | 102 | 6 | 2 | 280 | 9 | 301 | 9.16e-111 | 339 |
| Msa1357500 | MtrunA17_Chr2g0329151 | 51.887 | 318 | 131 | 7 | 4 | 305 | 11 | 322 | 3.26e-101 | 314 |
| Msa1357500 | MtrunA17_Chr3g0080401 | 50.495 | 202 | 90 | 3 | 83 | 280 | 1 | 196 | 9.38e-71 | 226 |
| Msa1357500 | MtrunA17_Chr6g0473191 | 50.490 | 204 | 88 | 4 | 83 | 280 | 1 | 197 | 1.04e-70 | 225 |
| Msa1357500 | MtrunA17_Chr6g0476291 | 49.510 | 204 | 90 | 4 | 83 | 280 | 1 | 197 | 2.52e-70 | 223 |
| Msa1357500 | MtrunA17_Chr6g0476301 | 39.877 | 326 | 173 | 7 | 83 | 403 | 1 | 308 | 4.07e-70 | 226 |
| Msa1357500 | MtrunA17_Chr7g0260281 | 41.250 | 80 | 43 | 1 | 72 | 151 | 1 | 76 | 6.48e-15 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1357500 | AT5G65100.1 | 61.679 | 274 | 87 | 1 | 27 | 282 | 33 | 306 | 6.64e-120 | 360 |
| Msa1357500 | AT5G10120.1 | 53.939 | 330 | 140 | 5 | 25 | 349 | 16 | 338 | 1.55e-118 | 354 |
| Msa1357500 | AT2G27050.1 | 63.100 | 271 | 86 | 5 | 18 | 280 | 36 | 300 | 7.54e-115 | 348 |
| Msa1357500 | AT3G20770.1 | 55.625 | 320 | 113 | 9 | 13 | 322 | 31 | 331 | 6.44e-110 | 337 |
| Msa1357500 | AT1G73730.2 | 48.910 | 321 | 142 | 6 | 9 | 323 | 4 | 308 | 2.87e-99 | 307 |
| Msa1357500 | AT1G73730.1 | 48.910 | 321 | 142 | 6 | 9 | 323 | 16 | 320 | 3.53e-99 | 307 |
| Msa1357500 | AT5G21120.3 | 48.221 | 253 | 124 | 2 | 36 | 281 | 52 | 304 | 2.62e-78 | 252 |
| Msa1357500 | AT5G21120.1 | 48.221 | 253 | 124 | 2 | 36 | 281 | 52 | 304 | 2.62e-78 | 252 |
| Msa1357500 | AT5G21120.2 | 48.221 | 253 | 124 | 2 | 36 | 281 | 59 | 311 | 2.80e-78 | 252 |
Find 93 sgRNAs with CRISPR-Local
Find 218 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCTACAATAGACAATTTA+TGG | 0.077687 | tig0016091:+6281 | None:intergenic |
| GAGATTGAAGGTGGGAAATT+TGG | 0.186624 | tig0016091:-6052 | Msa1357500:CDS |
| TGTTGATGATTGGTTGAAAA+TGG | 0.189311 | tig0016091:-6077 | Msa1357500:CDS |
| AGAAGATGTATGTAAGAATT+TGG | 0.224002 | tig0016091:+6688 | None:intergenic |
| AAGGTGGTGGGCCTTGTTCT+TGG | 0.225823 | tig0016091:+6509 | None:intergenic |
| AAAACATATGTCACCTGATT+TGG | 0.233366 | tig0016091:-6428 | Msa1357500:CDS |
| AGGTCATGTGGTTTCTTATA+AGG | 0.240985 | tig0016091:+6490 | None:intergenic |
| CACCTGATTTGGAGAAATTA+AGG | 0.264068 | tig0016091:-6417 | Msa1357500:CDS |
| GCATCACAATCAAGCAAATT+AGG | 0.277177 | tig0016091:+6112 | None:intergenic |
| TTCCTTAATTTCTCCAAATC+AGG | 0.277968 | tig0016091:+6415 | None:intergenic |
| GGCCCACAGGATTAGAAAAT+TGG | 0.318543 | tig0016091:-6555 | Msa1357500:CDS |
| GAAACCACATGACCTTAAAA+AGG | 0.331860 | tig0016091:-6482 | Msa1357500:CDS |
| AGACAATTTATGGCATTTAT+CGG | 0.339024 | tig0016091:+6291 | None:intergenic |
| TAAAATGTTCATCTTCTTGA+AGG | 0.356058 | tig0016091:+6728 | None:intergenic |
| AGGTGGTGGGCCTTGTTCTT+GGG | 0.363001 | tig0016091:+6510 | None:intergenic |
| GGCATGGAAAGTTTCTGTTT+TGG | 0.364875 | tig0016091:-6461 | Msa1357500:CDS |
| ATCTACCTCTTCAGTTCCTT+CGG | 0.367358 | tig0016091:+7098 | None:intergenic |
| GCGGCAATCGAAATGGTAAA+AGG | 0.387494 | tig0016091:-5980 | Msa1357500:CDS |
| GAGTTGAATCTTGTAAATCT+TGG | 0.394723 | tig0016091:+6665 | None:intergenic |
| TTTGGAGAAATTAAGGAAGT+TGG | 0.395073 | tig0016091:-6410 | Msa1357500:CDS |
| GAAAAGGGTAAACCAGTATC+AGG | 0.402465 | tig0016091:-6838 | Msa1357500:CDS |
| GATTCCATAAACAAAACCTT+TGG | 0.403082 | tig0016091:+6867 | None:intergenic |
| GATTTACAAGATTCAACTCT+TGG | 0.415106 | tig0016091:-6661 | Msa1357500:CDS |
| TTATGGAATCATCCCTGAAA+AGG | 0.418370 | tig0016091:-6854 | Msa1357500:CDS |
| AGTGACGATATTGATCCTTA+TGG | 0.425477 | tig0016091:-7129 | Msa1357500:CDS |
| CCTTCGGCTTCCACGCCATA+AGG | 0.429765 | tig0016091:+7114 | None:intergenic |
| TGTGGTTTCTTATAAGGTGG+TGG | 0.433405 | tig0016091:+6496 | None:intergenic |
| GAATTGAAAATGTTGATGAT+TGG | 0.439281 | tig0016091:-6087 | Msa1357500:CDS |
| GTTGATGATTGGTTGAAAAT+GGG | 0.440872 | tig0016091:-6076 | Msa1357500:CDS |
| CTATCAGAAGAACCTGATAC+TGG | 0.447835 | tig0016091:+6826 | None:intergenic |
| CAAATACATGGCAAAGATCA+TGG | 0.447987 | tig0016091:-6902 | Msa1357500:CDS |
| GTAATAACAGAAGTGAGAAA+AGG | 0.454452 | tig0016091:-6222 | Msa1357500:CDS |
| ATTCGAAGCGGCAATCGAAA+TGG | 0.459117 | tig0016091:-5987 | Msa1357500:CDS |
| AATCAAGAAGAAGCTTTGCT+TGG | 0.469320 | tig0016091:-6319 | Msa1357500:CDS |
| TGTTCATCTTCTTGAAGGAT+AGG | 0.475070 | tig0016091:+6733 | None:intergenic |
| CATTCTATTTAGTCTTGCGC+TGG | 0.480486 | tig0016091:+5866 | None:intergenic |
| CTGCAAGAGATAGTGCTACT+TGG | 0.489905 | tig0016091:-6354 | Msa1357500:CDS |
| TTGAAGGTGGGAAATTTGGA+TGG | 0.490896 | tig0016091:-6048 | Msa1357500:CDS |
| TATGGAATCATCCCTGAAAA+GGG | 0.513987 | tig0016091:-6853 | Msa1357500:CDS |
| GTGGTTTCTTATAAGGTGGT+GGG | 0.519151 | tig0016091:+6497 | None:intergenic |
| GTGGGGTGAACAAGGTCTGT+TGG | 0.522121 | tig0016091:-6533 | Msa1357500:CDS |
| TCTCCTCCATGGTGGCCCAC+AGG | 0.524329 | tig0016091:-6568 | Msa1357500:CDS |
| TTGAAAATGGGAGAGATTGA+AGG | 0.525609 | tig0016091:-6064 | Msa1357500:CDS |
| AGAGGGGAATTTCTCCTCCA+TGG | 0.534345 | tig0016091:-6579 | Msa1357500:CDS |
| TCCGCAGAGTAAGTTACCTA+TGG | 0.540781 | tig0016091:-6161 | Msa1357500:CDS |
| GTAGAGGAAGGTGAAAGCTC+TGG | 0.542132 | tig0016091:-6265 | Msa1357500:CDS |
| GAAAATTGGTGGGGTGAACA+AGG | 0.545195 | tig0016091:-6541 | Msa1357500:CDS |
| CCACAGGATTAGAAAATTGG+TGG | 0.547684 | tig0016091:-6552 | Msa1357500:CDS |
| AACAGAAAGTGTGGACTATG+AGG | 0.556253 | tig0016091:-7067 | Msa1357500:CDS |
| TGAAGGTGGGAAATTTGGAT+GGG | 0.560628 | tig0016091:-6047 | Msa1357500:CDS |
| GGTCTGTTGGCCCAAGAACA+AGG | 0.567933 | tig0016091:-6520 | Msa1357500:CDS |
| CTTCTGATAGTTTACGCGAG+TGG | 0.569816 | tig0016091:-6813 | Msa1357500:CDS |
| CCATAAATTGTCTATTGTAG+AGG | 0.575509 | tig0016091:-6281 | Msa1357500:CDS |
| CAAAACAAGAAGCATCGAGA+AGG | 0.577217 | tig0016091:-6957 | Msa1357500:CDS |
| AAAATGGGAGAGATTGAAGG+TGG | 0.578746 | tig0016091:-6061 | Msa1357500:CDS |
| AGGAGCTGAAGAAACGTATG+TGG | 0.578948 | tig0016091:-7047 | Msa1357500:CDS |
| TCTAATCCTGTGGGCCACCA+TGG | 0.579340 | tig0016091:+6562 | None:intergenic |
| CTGATAGTTTACGCGAGTGG+TGG | 0.579904 | tig0016091:-6810 | Msa1357500:CDS |
| TGATCAAAGTGCACCACTCG+CGG | 0.580612 | tig0016091:-6770 | Msa1357500:CDS |
| CACAGGATTAGAAAATTGGT+GGG | 0.587810 | tig0016091:-6551 | Msa1357500:CDS |
| GAGGAGGTTTCCACTCGAGA+GGG | 0.588256 | tig0016091:-6596 | Msa1357500:CDS |
| AAATGGGAGAGATTGAAGGT+GGG | 0.590105 | tig0016091:-6060 | Msa1357500:CDS |
| GTTGTTAAACTCATAGCCAT+AGG | 0.592800 | tig0016091:+6145 | None:intergenic |
| GTGGTGCACTTTGATCAAAA+CGG | 0.595848 | tig0016091:+6776 | None:intergenic |
| TGAAACTGAAACAGAAAGTG+TGG | 0.596612 | tig0016091:-7076 | Msa1357500:CDS |
| GGAGAAATTCCCCTCTCGAG+TGG | 0.599812 | tig0016091:+6586 | None:intergenic |
| TCATGTGGTTTCTTATAAGG+TGG | 0.601388 | tig0016091:+6493 | None:intergenic |
| AGTGGAAACCTCCTCTGTGG+TGG | 0.601734 | tig0016091:+6604 | None:intergenic |
| TTGGATGGGATGTTGAACAT+TGG | 0.603559 | tig0016091:-6033 | Msa1357500:CDS |
| GCATAATCTACATGATCAAG+AGG | 0.603727 | tig0016091:-5924 | Msa1357500:CDS |
| CCTTATGGCGTGGAAGCCGA+AGG | 0.608551 | tig0016091:-7114 | Msa1357500:CDS |
| GCTGAAGAAACGTATGTGGA+AGG | 0.612562 | tig0016091:-7043 | Msa1357500:CDS |
| CGATATTGATCCTTATGGCG+TGG | 0.616407 | tig0016091:-7124 | Msa1357500:CDS |
| AAGCAAATTAGGAACACGAT+GGG | 0.617311 | tig0016091:+6123 | None:intergenic |
| AAATTGTCTATTGTAGAGGA+AGG | 0.619180 | tig0016091:-6277 | Msa1357500:CDS |
| AGATTCAGTACTCAAATACA+TGG | 0.630198 | tig0016091:-6914 | Msa1357500:CDS |
| AGAGGAGGTTTCCACTCGAG+AGG | 0.641374 | tig0016091:-6597 | Msa1357500:CDS |
| TGAACATTGGCTGAATGATG+TGG | 0.642242 | tig0016091:-6020 | Msa1357500:CDS |
| ATGGATGTATGCAAAGCCAA+AGG | 0.644473 | tig0016091:-6883 | Msa1357500:CDS |
| GGTAAAAGGTAATCATAACA+TGG | 0.646961 | tig0016091:-5966 | Msa1357500:CDS |
| GGAAGCCGAAGGAACTGAAG+AGG | 0.651144 | tig0016091:-7103 | Msa1357500:CDS |
| CAAGCAAATTAGGAACACGA+TGG | 0.654501 | tig0016091:+6122 | None:intergenic |
| GGGGAATTTCTCCTCCATGG+TGG | 0.664010 | tig0016091:-6576 | Msa1357500:CDS |
| GAGGAAGGTGAAAGCTCTGG+CGG | 0.666246 | tig0016091:-6262 | Msa1357500:CDS |
| AGGAGGTTTCCACTCGAGAG+GGG | 0.673102 | tig0016091:-6595 | Msa1357500:CDS |
| AATCCTGTGGGCCACCATGG+AGG | 0.673179 | tig0016091:+6565 | None:intergenic |
| TCGAGTGGAAACCTCCTCTG+TGG | 0.673267 | tig0016091:+6601 | None:intergenic |
| ACTGTGTGCCACCACAGAGG+AGG | 0.682764 | tig0016091:-6612 | Msa1357500:CDS |
| ACAGGATTAGAAAATTGGTG+GGG | 0.694629 | tig0016091:-6550 | Msa1357500:CDS |
| GCCATAGGTAACTTACTCTG+CGG | 0.696224 | tig0016091:+6160 | None:intergenic |
| GGATGATCATGAATTCGAAG+CGG | 0.715431 | tig0016091:-5999 | Msa1357500:CDS |
| ATCGTCACTGATCACCACCA+TGG | 0.725060 | tig0016091:+7143 | None:intergenic |
| AACACTGTGTGCCACCACAG+AGG | 0.743629 | tig0016091:-6615 | Msa1357500:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGAACATTTTAATACTATAA+TGG | - | tig0016091:6299-6318 | Msa1357500:CDS | 15.0% |
| !!! | TGAACATTTTAATACTATAA+TGG | - | tig0016091:6299-6318 | Msa1357500:CDS | 15.0% |
| !!! | TTTCTTTGAACTTTTGTAAA+AGG | + | tig0016091:6005-6024 | None:intergenic | 20.0% |
| !!! | TTTCTTTGAACTTTTGTAAA+AGG | + | tig0016091:6005-6024 | None:intergenic | 20.0% |
| ! | TAAAATGTTCATCTTCTTGA+AGG | + | tig0016091:6290-6309 | None:intergenic | 25.0% |
| ! | AGAAGATGTATGTAAGAATT+TGG | + | tig0016091:6330-6349 | None:intergenic | 25.0% |
| ! | AGACAATTTATGGCATTTAT+CGG | + | tig0016091:6727-6746 | None:intergenic | 25.0% |
| !!! | GAATTGAAAATGTTGATGAT+TGG | - | tig0016091:6928-6947 | Msa1357500:CDS | 25.0% |
| !! | ATGGATTTTACTCAAAATCA+AGG | - | tig0016091:7068-7087 | Msa1357500:CDS | 25.0% |
| !! | TGGATTTTACTCAAAATCAA+GGG | - | tig0016091:7069-7088 | Msa1357500:CDS | 25.0% |
| ! | AAGAGGAAGAAAAATCTATT+TGG | - | tig0016091:7108-7127 | Msa1357500:CDS | 25.0% |
| ! | AGAGGAAGAAAAATCTATTT+GGG | - | tig0016091:7109-7128 | Msa1357500:CDS | 25.0% |
| ! | TAAAATGTTCATCTTCTTGA+AGG | + | tig0016091:6290-6309 | None:intergenic | 25.0% |
| ! | AGAAGATGTATGTAAGAATT+TGG | + | tig0016091:6330-6349 | None:intergenic | 25.0% |
| ! | AGACAATTTATGGCATTTAT+CGG | + | tig0016091:6727-6746 | None:intergenic | 25.0% |
| !!! | GAATTGAAAATGTTGATGAT+TGG | - | tig0016091:6928-6947 | Msa1357500:CDS | 25.0% |
| !! | ATGGATTTTACTCAAAATCA+AGG | - | tig0016091:7068-7087 | Msa1357500:CDS | 25.0% |
| !! | TGGATTTTACTCAAAATCAA+GGG | - | tig0016091:7069-7088 | Msa1357500:CDS | 25.0% |
| ! | AAGAGGAAGAAAAATCTATT+TGG | - | tig0016091:7108-7127 | Msa1357500:CDS | 25.0% |
| ! | AGAGGAAGAAAAATCTATTT+GGG | - | tig0016091:7109-7128 | Msa1357500:CDS | 25.0% |
| AGATTCAGTACTCAAATACA+TGG | - | tig0016091:6101-6120 | Msa1357500:CDS | 30.0% | |
| !!! | AAAGCCAAAGGTTTTGTTTA+TGG | - | tig0016091:6144-6163 | Msa1357500:CDS | 30.0% |
| GATTCCATAAACAAAACCTT+TGG | + | tig0016091:6151-6170 | None:intergenic | 30.0% | |
| GAGTTGAATCTTGTAAATCT+TGG | + | tig0016091:6353-6372 | None:intergenic | 30.0% | |
| GATTTACAAGATTCAACTCT+TGG | - | tig0016091:6354-6373 | Msa1357500:CDS | 30.0% | |
| ! | AAACTTTCCATGCCTTTTTA+AGG | + | tig0016091:6548-6567 | None:intergenic | 30.0% |
| AAAACATATGTCACCTGATT+TGG | - | tig0016091:6587-6606 | Msa1357500:CDS | 30.0% | |
| TTCCTTAATTTCTCCAAATC+AGG | + | tig0016091:6603-6622 | None:intergenic | 30.0% | |
| TTTGGAGAAATTAAGGAAGT+TGG | - | tig0016091:6605-6624 | Msa1357500:CDS | 30.0% | |
| CCTCTACAATAGACAATTTA+TGG | + | tig0016091:6737-6756 | None:intergenic | 30.0% | |
| CCATAAATTGTCTATTGTAG+AGG | - | tig0016091:6734-6753 | Msa1357500:CDS | 30.0% | |
| AAATTGTCTATTGTAGAGGA+AGG | - | tig0016091:6738-6757 | Msa1357500:CDS | 30.0% | |
| GTAATAACAGAAGTGAGAAA+AGG | - | tig0016091:6793-6812 | Msa1357500:CDS | 30.0% | |
| !!! | AGGAAGTTTGTTTTTGATGT+TGG | - | tig0016091:6813-6832 | Msa1357500:CDS | 30.0% |
| !!! | AAGTTTGTTTTTGATGTTGG+TGG | - | tig0016091:6816-6835 | Msa1357500:CDS | 30.0% |
| !! | TGTTGATGATTGGTTGAAAA+TGG | - | tig0016091:6938-6957 | Msa1357500:CDS | 30.0% |
| !! | GTTGATGATTGGTTGAAAAT+GGG | - | tig0016091:6939-6958 | Msa1357500:CDS | 30.0% |
| GGTAAAAGGTAATCATAACA+TGG | - | tig0016091:7049-7068 | Msa1357500:CDS | 30.0% | |
| AGATTCAGTACTCAAATACA+TGG | - | tig0016091:6101-6120 | Msa1357500:CDS | 30.0% | |
| !!! | AAAGCCAAAGGTTTTGTTTA+TGG | - | tig0016091:6144-6163 | Msa1357500:CDS | 30.0% |
| GATTCCATAAACAAAACCTT+TGG | + | tig0016091:6151-6170 | None:intergenic | 30.0% | |
| GAGTTGAATCTTGTAAATCT+TGG | + | tig0016091:6353-6372 | None:intergenic | 30.0% | |
| GATTTACAAGATTCAACTCT+TGG | - | tig0016091:6354-6373 | Msa1357500:CDS | 30.0% | |
| ! | AAACTTTCCATGCCTTTTTA+AGG | + | tig0016091:6548-6567 | None:intergenic | 30.0% |
| AAAACATATGTCACCTGATT+TGG | - | tig0016091:6587-6606 | Msa1357500:CDS | 30.0% | |
| TTCCTTAATTTCTCCAAATC+AGG | + | tig0016091:6603-6622 | None:intergenic | 30.0% | |
| TTTGGAGAAATTAAGGAAGT+TGG | - | tig0016091:6605-6624 | Msa1357500:CDS | 30.0% | |
| CCTCTACAATAGACAATTTA+TGG | + | tig0016091:6737-6756 | None:intergenic | 30.0% | |
| CCATAAATTGTCTATTGTAG+AGG | - | tig0016091:6734-6753 | Msa1357500:CDS | 30.0% | |
| AAATTGTCTATTGTAGAGGA+AGG | - | tig0016091:6738-6757 | Msa1357500:CDS | 30.0% | |
| GTAATAACAGAAGTGAGAAA+AGG | - | tig0016091:6793-6812 | Msa1357500:CDS | 30.0% | |
| !!! | AGGAAGTTTGTTTTTGATGT+TGG | - | tig0016091:6813-6832 | Msa1357500:CDS | 30.0% |
| !!! | AAGTTTGTTTTTGATGTTGG+TGG | - | tig0016091:6816-6835 | Msa1357500:CDS | 30.0% |
| !! | TGTTGATGATTGGTTGAAAA+TGG | - | tig0016091:6938-6957 | Msa1357500:CDS | 30.0% |
| !! | GTTGATGATTGGTTGAAAAT+GGG | - | tig0016091:6939-6958 | Msa1357500:CDS | 30.0% |
| GGTAAAAGGTAATCATAACA+TGG | - | tig0016091:7049-7068 | Msa1357500:CDS | 30.0% | |
| AGTGACGATATTGATCCTTA+TGG | - | tig0016091:5886-5905 | Msa1357500:CDS | 35.0% | |
| TGAAACTGAAACAGAAAGTG+TGG | - | tig0016091:5939-5958 | Msa1357500:CDS | 35.0% | |
| CAAATACATGGCAAAGATCA+TGG | - | tig0016091:6113-6132 | Msa1357500:CDS | 35.0% | |
| TTATGGAATCATCCCTGAAA+AGG | - | tig0016091:6161-6180 | Msa1357500:CDS | 35.0% | |
| TATGGAATCATCCCTGAAAA+GGG | - | tig0016091:6162-6181 | Msa1357500:CDS | 35.0% | |
| !!! | ATACTGGTTTACCCTTTTCA+GGG | + | tig0016091:6176-6195 | None:intergenic | 35.0% |
| TGTTCATCTTCTTGAAGGAT+AGG | + | tig0016091:6285-6304 | None:intergenic | 35.0% | |
| ! | CACCAATTTTCTAATCCTGT+GGG | + | tig0016091:6465-6484 | None:intergenic | 35.0% |
| CACAGGATTAGAAAATTGGT+GGG | - | tig0016091:6464-6483 | Msa1357500:CDS | 35.0% | |
| ACAGGATTAGAAAATTGGTG+GGG | - | tig0016091:6465-6484 | Msa1357500:CDS | 35.0% | |
| TCATGTGGTTTCTTATAAGG+TGG | + | tig0016091:6525-6544 | None:intergenic | 35.0% | |
| AGGTCATGTGGTTTCTTATA+AGG | + | tig0016091:6528-6547 | None:intergenic | 35.0% | |
| GAAACCACATGACCTTAAAA+AGG | - | tig0016091:6533-6552 | Msa1357500:CDS | 35.0% | |
| !! | CACCTGATTTGGAGAAATTA+AGG | - | tig0016091:6598-6617 | Msa1357500:CDS | 35.0% |
| AATCAAGAAGAAGCTTTGCT+TGG | - | tig0016091:6696-6715 | Msa1357500:CDS | 35.0% | |
| GTTGTTAAACTCATAGCCAT+AGG | + | tig0016091:6873-6892 | None:intergenic | 35.0% | |
| AAGCAAATTAGGAACACGAT+GGG | + | tig0016091:6895-6914 | None:intergenic | 35.0% | |
| GCATCACAATCAAGCAAATT+AGG | + | tig0016091:6906-6925 | None:intergenic | 35.0% | |
| TTGAAAATGGGAGAGATTGA+AGG | - | tig0016091:6951-6970 | Msa1357500:CDS | 35.0% | |
| GCATAATCTACATGATCAAG+AGG | - | tig0016091:7091-7110 | Msa1357500:CDS | 35.0% | |
| AGTGACGATATTGATCCTTA+TGG | - | tig0016091:5886-5905 | Msa1357500:CDS | 35.0% | |
| TGAAACTGAAACAGAAAGTG+TGG | - | tig0016091:5939-5958 | Msa1357500:CDS | 35.0% | |
| CAAATACATGGCAAAGATCA+TGG | - | tig0016091:6113-6132 | Msa1357500:CDS | 35.0% | |
| TTATGGAATCATCCCTGAAA+AGG | - | tig0016091:6161-6180 | Msa1357500:CDS | 35.0% | |
| TATGGAATCATCCCTGAAAA+GGG | - | tig0016091:6162-6181 | Msa1357500:CDS | 35.0% | |
| !!! | ATACTGGTTTACCCTTTTCA+GGG | + | tig0016091:6176-6195 | None:intergenic | 35.0% |
| TGTTCATCTTCTTGAAGGAT+AGG | + | tig0016091:6285-6304 | None:intergenic | 35.0% | |
| ! | CACCAATTTTCTAATCCTGT+GGG | + | tig0016091:6465-6484 | None:intergenic | 35.0% |
| CACAGGATTAGAAAATTGGT+GGG | - | tig0016091:6464-6483 | Msa1357500:CDS | 35.0% | |
| ACAGGATTAGAAAATTGGTG+GGG | - | tig0016091:6465-6484 | Msa1357500:CDS | 35.0% | |
| TCATGTGGTTTCTTATAAGG+TGG | + | tig0016091:6525-6544 | None:intergenic | 35.0% | |
| AGGTCATGTGGTTTCTTATA+AGG | + | tig0016091:6528-6547 | None:intergenic | 35.0% | |
| GAAACCACATGACCTTAAAA+AGG | - | tig0016091:6533-6552 | Msa1357500:CDS | 35.0% | |
| !! | CACCTGATTTGGAGAAATTA+AGG | - | tig0016091:6598-6617 | Msa1357500:CDS | 35.0% |
| AATCAAGAAGAAGCTTTGCT+TGG | - | tig0016091:6696-6715 | Msa1357500:CDS | 35.0% | |
| GTTGTTAAACTCATAGCCAT+AGG | + | tig0016091:6873-6892 | None:intergenic | 35.0% | |
| AAGCAAATTAGGAACACGAT+GGG | + | tig0016091:6895-6914 | None:intergenic | 35.0% | |
| GCATCACAATCAAGCAAATT+AGG | + | tig0016091:6906-6925 | None:intergenic | 35.0% | |
| TTGAAAATGGGAGAGATTGA+AGG | - | tig0016091:6951-6970 | Msa1357500:CDS | 35.0% | |
| GCATAATCTACATGATCAAG+AGG | - | tig0016091:7091-7110 | Msa1357500:CDS | 35.0% | |
| ATCTACCTCTTCAGTTCCTT+CGG | + | tig0016091:5920-5939 | None:intergenic | 40.0% | |
| ! | AACAGAAAGTGTGGACTATG+AGG | - | tig0016091:5948-5967 | Msa1357500:CDS | 40.0% |
| !!! | TCTTGTTTTGCTTGTTGCTC+AGG | + | tig0016091:6048-6067 | None:intergenic | 40.0% |
| !! | CAAAACAAGAAGCATCGAGA+AGG | - | tig0016091:6058-6077 | Msa1357500:CDS | 40.0% |
| ATGGATGTATGCAAAGCCAA+AGG | - | tig0016091:6132-6151 | Msa1357500:CDS | 40.0% | |
| !!! | GATACTGGTTTACCCTTTTC+AGG | + | tig0016091:6177-6196 | None:intergenic | 40.0% |
| GAAAAGGGTAAACCAGTATC+AGG | - | tig0016091:6177-6196 | Msa1357500:CDS | 40.0% | |
| CTATCAGAAGAACCTGATAC+TGG | + | tig0016091:6192-6211 | None:intergenic | 40.0% | |
| GTGGTGCACTTTGATCAAAA+CGG | + | tig0016091:6242-6261 | None:intergenic | 40.0% | |
| ! | CCACCAATTTTCTAATCCTG+TGG | + | tig0016091:6466-6485 | None:intergenic | 40.0% |
| CCACAGGATTAGAAAATTGG+TGG | - | tig0016091:6463-6482 | Msa1357500:CDS | 40.0% | |
| GTGGTTTCTTATAAGGTGGT+GGG | + | tig0016091:6521-6540 | None:intergenic | 40.0% | |
| TGTGGTTTCTTATAAGGTGG+TGG | + | tig0016091:6522-6541 | None:intergenic | 40.0% | |
| !!! | CATGCCTTTTTAAGGTCATG+TGG | + | tig0016091:6540-6559 | None:intergenic | 40.0% |
| CACATGACCTTAAAAAGGCA+TGG | - | tig0016091:6538-6557 | Msa1357500:CDS | 40.0% | |
| ! | GGCATGGAAAGTTTCTGTTT+TGG | - | tig0016091:6554-6573 | Msa1357500:CDS | 40.0% |
| CAAGCAAATTAGGAACACGA+TGG | + | tig0016091:6896-6915 | None:intergenic | 40.0% | |
| AAAATGGGAGAGATTGAAGG+TGG | - | tig0016091:6954-6973 | Msa1357500:CDS | 40.0% | |
| AAATGGGAGAGATTGAAGGT+GGG | - | tig0016091:6955-6974 | Msa1357500:CDS | 40.0% | |
| GAGATTGAAGGTGGGAAATT+TGG | - | tig0016091:6963-6982 | Msa1357500:CDS | 40.0% | |
| TTGAAGGTGGGAAATTTGGA+TGG | - | tig0016091:6967-6986 | Msa1357500:CDS | 40.0% | |
| TGAAGGTGGGAAATTTGGAT+GGG | - | tig0016091:6968-6987 | Msa1357500:CDS | 40.0% | |
| TTGGATGGGATGTTGAACAT+TGG | - | tig0016091:6982-7001 | Msa1357500:CDS | 40.0% | |
| ! | TGAACATTGGCTGAATGATG+TGG | - | tig0016091:6995-7014 | Msa1357500:CDS | 40.0% |
| GGATGATCATGAATTCGAAG+CGG | - | tig0016091:7016-7035 | Msa1357500:CDS | 40.0% | |
| ATCTACCTCTTCAGTTCCTT+CGG | + | tig0016091:5920-5939 | None:intergenic | 40.0% | |
| ! | AACAGAAAGTGTGGACTATG+AGG | - | tig0016091:5948-5967 | Msa1357500:CDS | 40.0% |
| !!! | TCTTGTTTTGCTTGTTGCTC+AGG | + | tig0016091:6048-6067 | None:intergenic | 40.0% |
| !! | CAAAACAAGAAGCATCGAGA+AGG | - | tig0016091:6058-6077 | Msa1357500:CDS | 40.0% |
| ATGGATGTATGCAAAGCCAA+AGG | - | tig0016091:6132-6151 | Msa1357500:CDS | 40.0% | |
| !!! | GATACTGGTTTACCCTTTTC+AGG | + | tig0016091:6177-6196 | None:intergenic | 40.0% |
| GAAAAGGGTAAACCAGTATC+AGG | - | tig0016091:6177-6196 | Msa1357500:CDS | 40.0% | |
| CTATCAGAAGAACCTGATAC+TGG | + | tig0016091:6192-6211 | None:intergenic | 40.0% | |
| GTGGTGCACTTTGATCAAAA+CGG | + | tig0016091:6242-6261 | None:intergenic | 40.0% | |
| ! | CCACCAATTTTCTAATCCTG+TGG | + | tig0016091:6466-6485 | None:intergenic | 40.0% |
| CCACAGGATTAGAAAATTGG+TGG | - | tig0016091:6463-6482 | Msa1357500:CDS | 40.0% | |
| GTGGTTTCTTATAAGGTGGT+GGG | + | tig0016091:6521-6540 | None:intergenic | 40.0% | |
| TGTGGTTTCTTATAAGGTGG+TGG | + | tig0016091:6522-6541 | None:intergenic | 40.0% | |
| !!! | CATGCCTTTTTAAGGTCATG+TGG | + | tig0016091:6540-6559 | None:intergenic | 40.0% |
| CACATGACCTTAAAAAGGCA+TGG | - | tig0016091:6538-6557 | Msa1357500:CDS | 40.0% | |
| ! | GGCATGGAAAGTTTCTGTTT+TGG | - | tig0016091:6554-6573 | Msa1357500:CDS | 40.0% |
| CAAGCAAATTAGGAACACGA+TGG | + | tig0016091:6896-6915 | None:intergenic | 40.0% | |
| AAAATGGGAGAGATTGAAGG+TGG | - | tig0016091:6954-6973 | Msa1357500:CDS | 40.0% | |
| AAATGGGAGAGATTGAAGGT+GGG | - | tig0016091:6955-6974 | Msa1357500:CDS | 40.0% | |
| GAGATTGAAGGTGGGAAATT+TGG | - | tig0016091:6963-6982 | Msa1357500:CDS | 40.0% | |
| TTGAAGGTGGGAAATTTGGA+TGG | - | tig0016091:6967-6986 | Msa1357500:CDS | 40.0% | |
| TGAAGGTGGGAAATTTGGAT+GGG | - | tig0016091:6968-6987 | Msa1357500:CDS | 40.0% | |
| TTGGATGGGATGTTGAACAT+TGG | - | tig0016091:6982-7001 | Msa1357500:CDS | 40.0% | |
| ! | TGAACATTGGCTGAATGATG+TGG | - | tig0016091:6995-7014 | Msa1357500:CDS | 40.0% |
| GGATGATCATGAATTCGAAG+CGG | - | tig0016091:7016-7035 | Msa1357500:CDS | 40.0% | |
| CGATATTGATCCTTATGGCG+TGG | - | tig0016091:5891-5910 | Msa1357500:CDS | 45.0% | |
| AGGAGCTGAAGAAACGTATG+TGG | - | tig0016091:5968-5987 | Msa1357500:CDS | 45.0% | |
| GCTGAAGAAACGTATGTGGA+AGG | - | tig0016091:5972-5991 | Msa1357500:CDS | 45.0% | |
| CTTCTGATAGTTTACGCGAG+TGG | - | tig0016091:6202-6221 | Msa1357500:CDS | 45.0% | |
| ! | AAGTATTTTGCAACCGCGAG+TGG | + | tig0016091:6261-6280 | None:intergenic | 45.0% |
| GGCCCACAGGATTAGAAAAT+TGG | - | tig0016091:6460-6479 | Msa1357500:CDS | 45.0% | |
| GAAAATTGGTGGGGTGAACA+AGG | - | tig0016091:6474-6493 | Msa1357500:CDS | 45.0% | |
| ! | CTGCAAGAGATAGTGCTACT+TGG | - | tig0016091:6661-6680 | Msa1357500:CDS | 45.0% |
| TCCGCAGAGTAAGTTACCTA+TGG | - | tig0016091:6854-6873 | Msa1357500:CDS | 45.0% | |
| GCCATAGGTAACTTACTCTG+CGG | + | tig0016091:6858-6877 | None:intergenic | 45.0% | |
| ATTCGAAGCGGCAATCGAAA+TGG | - | tig0016091:7028-7047 | Msa1357500:CDS | 45.0% | |
| GCGGCAATCGAAATGGTAAA+AGG | - | tig0016091:7035-7054 | Msa1357500:CDS | 45.0% | |
| CGATATTGATCCTTATGGCG+TGG | - | tig0016091:5891-5910 | Msa1357500:CDS | 45.0% | |
| AGGAGCTGAAGAAACGTATG+TGG | - | tig0016091:5968-5987 | Msa1357500:CDS | 45.0% | |
| GCTGAAGAAACGTATGTGGA+AGG | - | tig0016091:5972-5991 | Msa1357500:CDS | 45.0% | |
| CTTCTGATAGTTTACGCGAG+TGG | - | tig0016091:6202-6221 | Msa1357500:CDS | 45.0% | |
| ! | AAGTATTTTGCAACCGCGAG+TGG | + | tig0016091:6261-6280 | None:intergenic | 45.0% |
| GGCCCACAGGATTAGAAAAT+TGG | - | tig0016091:6460-6479 | Msa1357500:CDS | 45.0% | |
| GAAAATTGGTGGGGTGAACA+AGG | - | tig0016091:6474-6493 | Msa1357500:CDS | 45.0% | |
| ! | CTGCAAGAGATAGTGCTACT+TGG | - | tig0016091:6661-6680 | Msa1357500:CDS | 45.0% |
| TCCGCAGAGTAAGTTACCTA+TGG | - | tig0016091:6854-6873 | Msa1357500:CDS | 45.0% | |
| GCCATAGGTAACTTACTCTG+CGG | + | tig0016091:6858-6877 | None:intergenic | 45.0% | |
| ATTCGAAGCGGCAATCGAAA+TGG | - | tig0016091:7028-7047 | Msa1357500:CDS | 45.0% | |
| GCGGCAATCGAAATGGTAAA+AGG | - | tig0016091:7035-7054 | Msa1357500:CDS | 45.0% | |
| CTGATAGTTTACGCGAGTGG+TGG | - | tig0016091:6205-6224 | Msa1357500:CDS | 50.0% | |
| TGATCAAAGTGCACCACTCG+CGG | - | tig0016091:6245-6264 | Msa1357500:CDS | 50.0% | |
| AGAGGGGAATTTCTCCTCCA+TGG | - | tig0016091:6436-6455 | Msa1357500:CDS | 50.0% | |
| GTAGAGGAAGGTGAAAGCTC+TGG | - | tig0016091:6750-6769 | Msa1357500:CDS | 50.0% | |
| CTGATAGTTTACGCGAGTGG+TGG | - | tig0016091:6205-6224 | Msa1357500:CDS | 50.0% | |
| TGATCAAAGTGCACCACTCG+CGG | - | tig0016091:6245-6264 | Msa1357500:CDS | 50.0% | |
| AGAGGGGAATTTCTCCTCCA+TGG | - | tig0016091:6436-6455 | Msa1357500:CDS | 50.0% | |
| GTAGAGGAAGGTGAAAGCTC+TGG | - | tig0016091:6750-6769 | Msa1357500:CDS | 50.0% | |
| GGAAGCCGAAGGAACTGAAG+AGG | - | tig0016091:5912-5931 | Msa1357500:CDS | 55.0% | |
| AACACTGTGTGCCACCACAG+AGG | - | tig0016091:6400-6419 | Msa1357500:CDS | 55.0% | |
| AGTGGAAACCTCCTCTGTGG+TGG | + | tig0016091:6414-6433 | None:intergenic | 55.0% | |
| TCGAGTGGAAACCTCCTCTG+TGG | + | tig0016091:6417-6436 | None:intergenic | 55.0% | |
| AGAGGAGGTTTCCACTCGAG+AGG | - | tig0016091:6418-6437 | Msa1357500:CDS | 55.0% | |
| GAGGAGGTTTCCACTCGAGA+GGG | - | tig0016091:6419-6438 | Msa1357500:CDS | 55.0% | |
| AGGAGGTTTCCACTCGAGAG+GGG | - | tig0016091:6420-6439 | Msa1357500:CDS | 55.0% | |
| GGAGAAATTCCCCTCTCGAG+TGG | + | tig0016091:6432-6451 | None:intergenic | 55.0% | |
| GGGGAATTTCTCCTCCATGG+TGG | - | tig0016091:6439-6458 | Msa1357500:CDS | 55.0% | |
| TCTAATCCTGTGGGCCACCA+TGG | + | tig0016091:6456-6475 | None:intergenic | 55.0% | |
| GTGGGGTGAACAAGGTCTGT+TGG | - | tig0016091:6482-6501 | Msa1357500:CDS | 55.0% | |
| GGTCTGTTGGCCCAAGAACA+AGG | - | tig0016091:6495-6514 | Msa1357500:CDS | 55.0% | |
| !! | AGGTGGTGGGCCTTGTTCTT+GGG | + | tig0016091:6508-6527 | None:intergenic | 55.0% |
| !! | AAGGTGGTGGGCCTTGTTCT+TGG | + | tig0016091:6509-6528 | None:intergenic | 55.0% |
| ! | GAGGAAGGTGAAAGCTCTGG+CGG | - | tig0016091:6753-6772 | Msa1357500:CDS | 55.0% |
| GGAAGCCGAAGGAACTGAAG+AGG | - | tig0016091:5912-5931 | Msa1357500:CDS | 55.0% | |
| AACACTGTGTGCCACCACAG+AGG | - | tig0016091:6400-6419 | Msa1357500:CDS | 55.0% | |
| AGTGGAAACCTCCTCTGTGG+TGG | + | tig0016091:6414-6433 | None:intergenic | 55.0% | |
| TCGAGTGGAAACCTCCTCTG+TGG | + | tig0016091:6417-6436 | None:intergenic | 55.0% | |
| AGAGGAGGTTTCCACTCGAG+AGG | - | tig0016091:6418-6437 | Msa1357500:CDS | 55.0% | |
| GAGGAGGTTTCCACTCGAGA+GGG | - | tig0016091:6419-6438 | Msa1357500:CDS | 55.0% | |
| AGGAGGTTTCCACTCGAGAG+GGG | - | tig0016091:6420-6439 | Msa1357500:CDS | 55.0% | |
| GGAGAAATTCCCCTCTCGAG+TGG | + | tig0016091:6432-6451 | None:intergenic | 55.0% | |
| GGGGAATTTCTCCTCCATGG+TGG | - | tig0016091:6439-6458 | Msa1357500:CDS | 55.0% | |
| TCTAATCCTGTGGGCCACCA+TGG | + | tig0016091:6456-6475 | None:intergenic | 55.0% | |
| GTGGGGTGAACAAGGTCTGT+TGG | - | tig0016091:6482-6501 | Msa1357500:CDS | 55.0% | |
| GGTCTGTTGGCCCAAGAACA+AGG | - | tig0016091:6495-6514 | Msa1357500:CDS | 55.0% | |
| !! | AGGTGGTGGGCCTTGTTCTT+GGG | + | tig0016091:6508-6527 | None:intergenic | 55.0% |
| !! | AAGGTGGTGGGCCTTGTTCT+TGG | + | tig0016091:6509-6528 | None:intergenic | 55.0% |
| ! | GAGGAAGGTGAAAGCTCTGG+CGG | - | tig0016091:6753-6772 | Msa1357500:CDS | 55.0% |
| CCTTCGGCTTCCACGCCATA+AGG | + | tig0016091:5904-5923 | None:intergenic | 60.0% | |
| CCTTATGGCGTGGAAGCCGA+AGG | - | tig0016091:5901-5920 | Msa1357500:CDS | 60.0% | |
| ACTGTGTGCCACCACAGAGG+AGG | - | tig0016091:6403-6422 | Msa1357500:CDS | 60.0% | |
| AATCCTGTGGGCCACCATGG+AGG | + | tig0016091:6453-6472 | None:intergenic | 60.0% | |
| CCTTCGGCTTCCACGCCATA+AGG | + | tig0016091:5904-5923 | None:intergenic | 60.0% | |
| CCTTATGGCGTGGAAGCCGA+AGG | - | tig0016091:5901-5920 | Msa1357500:CDS | 60.0% | |
| ACTGTGTGCCACCACAGAGG+AGG | - | tig0016091:6403-6422 | Msa1357500:CDS | 60.0% | |
| AATCCTGTGGGCCACCATGG+AGG | + | tig0016091:6453-6472 | None:intergenic | 60.0% | |
| TCTCCTCCATGGTGGCCCAC+AGG | - | tig0016091:6447-6466 | Msa1357500:CDS | 65.0% | |
| TCTCCTCCATGGTGGCCCAC+AGG | - | tig0016091:6447-6466 | Msa1357500:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0016091 | gene | 5874 | 7163 | 5874 | ID=Msa1357500;Name=Msa1357500 |
| tig0016091 | mRNA | 5874 | 7163 | 5874 | ID=Msa1357500-mRNA-1;Parent=Msa1357500;Name=Msa1357500-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|429 |
| tig0016091 | exon | 5874 | 7163 | 5874 | ID=Msa1357500-mRNA-1:exon:10410;Parent=Msa1357500-mRNA-1 |
| tig0016091 | CDS | 5874 | 7163 | 5874 | ID=Msa1357500-mRNA-1:cds;Parent=Msa1357500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
