Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1359350 | AES77659.2 | 63.095 | 84 | 28 | 1 | 58 | 138 | 2 | 85 | 1.53e-23 | 104 |
| Msa1359350 | AES77659.2 | 77.397 | 146 | 30 | 1 | 1 | 143 | 31 | 176 | 1.74e-61 | 201 |
| Msa1359350 | AES77659.2 | 82.609 | 161 | 23 | 2 | 1 | 158 | 117 | 275 | 2.37e-84 | 259 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1359350 | sp|Q9LFQ3|SNL2_ARATH | 40.602 | 133 | 78 | 1 | 1 | 132 | 68 | 200 | 1.49e-21 | 93.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1359350 | G7L5A9 | 63.095 | 84 | 28 | 1 | 58 | 138 | 2 | 85 | 7.28e-24 | 104 |
| Msa1359350 | G7L5A9 | 77.397 | 146 | 30 | 1 | 1 | 143 | 31 | 176 | 8.33e-62 | 201 |
| Msa1359350 | G7L5A9 | 82.609 | 161 | 23 | 2 | 1 | 158 | 117 | 275 | 1.13e-84 | 259 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1359350 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1359350 | MtrunA17_Chr7g0218891 | 82.550 | 149 | 23 | 1 | 1 | 146 | 117 | 265 | 2.16e-82 | 244 |
| Msa1359350 | MtrunA17_Chr7g0218891 | 77.397 | 146 | 30 | 1 | 1 | 143 | 31 | 176 | 9.66e-66 | 201 |
| Msa1359350 | MtrunA17_Chr7g0218891 | 63.095 | 84 | 28 | 1 | 58 | 138 | 2 | 85 | 1.13e-27 | 103 |
| Msa1359350 | MtrunA17_Chr1g0206771 | 44.444 | 135 | 69 | 2 | 2 | 135 | 33 | 162 | 5.72e-28 | 102 |
| Msa1359350 | MtrunA17_Chr3g0077891 | 40.541 | 148 | 80 | 2 | 1 | 140 | 25 | 172 | 1.37e-27 | 101 |
| Msa1359350 | MtrunA17_Chr3g0077891 | 48.611 | 72 | 35 | 1 | 70 | 139 | 9 | 80 | 1.62e-13 | 64.7 |
| Msa1359350 | MtrunA17_Chr4g0075861 | 39.286 | 140 | 80 | 2 | 1 | 139 | 25 | 160 | 7.53e-25 | 98.2 |
| Msa1359350 | MtrunA17_Chr4g0075861 | 38.571 | 140 | 84 | 2 | 2 | 140 | 106 | 244 | 1.22e-22 | 92.0 |
| Msa1359350 | MtrunA17_Chr8g0364231 | 39.552 | 134 | 78 | 2 | 1 | 131 | 58 | 191 | 6.53e-24 | 97.1 |
| Msa1359350 | MtrunA17_Chr8g0364231 | 53.333 | 60 | 28 | 0 | 84 | 143 | 58 | 117 | 2.67e-14 | 69.3 |
| Msa1359350 | MtrunA17_Chr3g0077941 | 38.776 | 147 | 83 | 2 | 1 | 140 | 25 | 171 | 1.21e-23 | 90.9 |
| Msa1359350 | MtrunA17_Chr3g0077941 | 47.222 | 72 | 36 | 1 | 70 | 139 | 9 | 80 | 3.14e-13 | 63.9 |
| Msa1359350 | MtrunA17_Chr3g0077881 | 39.161 | 143 | 79 | 2 | 1 | 135 | 25 | 167 | 1.47e-23 | 90.9 |
| Msa1359350 | MtrunA17_Chr3g0077881 | 45.570 | 79 | 41 | 1 | 70 | 146 | 9 | 87 | 3.74e-14 | 66.2 |
| Msa1359350 | MtrunA17_Chr3g0077911 | 39.259 | 135 | 79 | 2 | 2 | 133 | 22 | 156 | 2.32e-23 | 89.7 |
| Msa1359350 | MtrunA17_Chr3g0077861 | 39.259 | 135 | 79 | 2 | 2 | 133 | 22 | 156 | 3.85e-23 | 89.4 |
| Msa1359350 | MtrunA17_Chr4g0075971 | 37.857 | 140 | 82 | 2 | 1 | 139 | 25 | 160 | 1.12e-22 | 93.2 |
| Msa1359350 | MtrunA17_Chr4g0075971 | 37.857 | 140 | 85 | 2 | 2 | 140 | 106 | 244 | 6.78e-21 | 88.2 |
| Msa1359350 | MtrunA17_Chr1g0205821 | 36.364 | 143 | 88 | 2 | 1 | 140 | 29 | 171 | 1.35e-22 | 88.6 |
| Msa1359350 | MtrunA17_Chr5g0415031 | 38.235 | 136 | 79 | 3 | 1 | 132 | 59 | 193 | 1.43e-20 | 87.4 |
| Msa1359350 | MtrunA17_Chr5g0415031 | 49.180 | 61 | 31 | 0 | 83 | 143 | 58 | 118 | 1.05e-12 | 64.7 |
| Msa1359350 | MtrunA17_Chr1g0205831 | 35.664 | 143 | 74 | 3 | 1 | 140 | 18 | 145 | 3.91e-20 | 82.0 |
| Msa1359350 | MtrunA17_Chr6g0452021 | 32.704 | 159 | 105 | 2 | 1 | 158 | 59 | 216 | 4.80e-19 | 82.8 |
| Msa1359350 | MtrunA17_Chr6g0452021 | 41.096 | 73 | 42 | 1 | 70 | 141 | 44 | 116 | 8.50e-11 | 58.9 |
| Msa1359350 | MtrunA17_Chr6g0452001 | 36.567 | 134 | 82 | 2 | 1 | 131 | 79 | 212 | 1.22e-18 | 81.6 |
| Msa1359350 | MtrunA17_Chr6g0452001 | 42.667 | 75 | 42 | 1 | 70 | 143 | 64 | 138 | 5.09e-11 | 60.1 |
| Msa1359350 | MtrunA17_Chr1g0205811 | 44.872 | 78 | 42 | 1 | 67 | 143 | 12 | 89 | 9.89e-14 | 63.9 |
| Msa1359350 | MtrunA17_Chr1g0205811 | 43.750 | 80 | 41 | 1 | 1 | 76 | 30 | 109 | 1.91e-13 | 63.2 |
| Msa1359350 | MtrunA17_Chr1g0206781 | 35.922 | 103 | 43 | 1 | 2 | 104 | 28 | 107 | 1.02e-13 | 63.9 |
| Msa1359350 | MtrunA17_Chr1g0206781 | 38.095 | 84 | 51 | 1 | 61 | 143 | 3 | 86 | 3.99e-12 | 59.7 |
| Msa1359350 | MtrunA17_Chr1g0205801 | 45.333 | 75 | 40 | 1 | 70 | 143 | 13 | 87 | 1.30e-12 | 60.8 |
| Msa1359350 | MtrunA17_Chr1g0205801 | 46.667 | 60 | 32 | 0 | 1 | 60 | 28 | 87 | 2.79e-12 | 60.1 |
| Msa1359350 | MtrunA17_Chr7g0218911 | 46.429 | 56 | 30 | 0 | 83 | 138 | 13 | 68 | 9.71e-12 | 58.5 |
| Msa1359350 | MtrunA17_Chr1g0205861 | 42.667 | 75 | 42 | 1 | 70 | 143 | 17 | 91 | 4.93e-11 | 57.0 |
| Msa1359350 | MtrunA17_Chr8g0364021 | 43.548 | 62 | 35 | 0 | 83 | 144 | 59 | 120 | 8.77e-11 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1359350 | AT1G70030.1 | 38.346 | 133 | 77 | 2 | 1 | 130 | 27 | 157 | 1.01e-22 | 88.6 |
| Msa1359350 | AT5G15020.1 | 40.602 | 133 | 78 | 1 | 1 | 132 | 68 | 200 | 1.51e-22 | 93.6 |
| Msa1359350 | AT5G15020.2 | 40.602 | 133 | 78 | 1 | 1 | 132 | 68 | 200 | 1.70e-22 | 93.2 |
| Msa1359350 | AT1G24190.3 | 38.806 | 134 | 79 | 3 | 1 | 131 | 30 | 163 | 8.08e-21 | 88.6 |
| Msa1359350 | AT1G24190.3 | 44.000 | 75 | 41 | 1 | 70 | 143 | 15 | 89 | 1.41e-11 | 62.0 |
| Msa1359350 | AT1G24190.2 | 38.806 | 134 | 79 | 3 | 1 | 131 | 30 | 163 | 8.24e-21 | 88.6 |
| Msa1359350 | AT1G24190.2 | 44.000 | 75 | 41 | 1 | 70 | 143 | 15 | 89 | 1.52e-11 | 62.0 |
| Msa1359350 | AT1G24190.1 | 38.806 | 134 | 79 | 3 | 1 | 131 | 30 | 163 | 8.24e-21 | 88.6 |
| Msa1359350 | AT1G24190.1 | 44.000 | 75 | 41 | 1 | 70 | 143 | 15 | 89 | 1.44e-11 | 62.0 |
| Msa1359350 | AT3G01320.1 | 35.032 | 157 | 96 | 3 | 1 | 155 | 73 | 225 | 3.48e-20 | 86.7 |
| Msa1359350 | AT3G01320.1 | 46.269 | 67 | 36 | 0 | 83 | 149 | 72 | 138 | 1.86e-12 | 64.3 |
| Msa1359350 | AT3G01320.2 | 35.032 | 157 | 96 | 3 | 1 | 155 | 73 | 225 | 3.58e-20 | 86.7 |
| Msa1359350 | AT3G01320.2 | 46.269 | 67 | 36 | 0 | 83 | 149 | 72 | 138 | 1.99e-12 | 64.3 |
| Msa1359350 | AT1G70060.2 | 37.778 | 135 | 80 | 2 | 1 | 131 | 30 | 164 | 3.79e-20 | 86.7 |
| Msa1359350 | AT1G70060.1 | 37.778 | 135 | 80 | 2 | 1 | 131 | 30 | 164 | 3.79e-20 | 86.7 |
| Msa1359350 | AT1G59890.1 | 34.848 | 132 | 85 | 1 | 1 | 131 | 61 | 192 | 6.69e-20 | 85.9 |
| Msa1359350 | AT1G59890.1 | 44.118 | 68 | 38 | 0 | 84 | 151 | 61 | 128 | 1.95e-11 | 61.6 |
| Msa1359350 | AT1G59890.2 | 34.848 | 132 | 85 | 1 | 1 | 131 | 61 | 192 | 6.82e-20 | 85.9 |
| Msa1359350 | AT1G59890.2 | 44.118 | 68 | 38 | 0 | 84 | 151 | 61 | 128 | 1.86e-11 | 61.6 |
| Msa1359350 | AT1G59890.3 | 34.848 | 132 | 85 | 1 | 1 | 131 | 61 | 192 | 7.02e-20 | 85.9 |
| Msa1359350 | AT1G59890.3 | 44.118 | 68 | 38 | 0 | 84 | 151 | 61 | 128 | 1.90e-11 | 61.6 |
| Msa1359350 | AT1G59890.4 | 34.848 | 132 | 85 | 1 | 1 | 131 | 61 | 192 | 7.50e-20 | 85.9 |
| Msa1359350 | AT1G59890.4 | 44.118 | 68 | 38 | 0 | 84 | 151 | 61 | 128 | 2.03e-11 | 61.6 |
| Msa1359350 | AT1G10450.3 | 35.556 | 135 | 86 | 1 | 1 | 134 | 100 | 234 | 7.06e-19 | 82.8 |
| Msa1359350 | AT1G10450.2 | 35.556 | 135 | 86 | 1 | 1 | 134 | 49 | 183 | 9.30e-19 | 82.4 |
| Msa1359350 | AT1G10450.1 | 35.556 | 135 | 86 | 1 | 1 | 134 | 49 | 183 | 9.30e-19 | 82.4 |
| Msa1359350 | AT1G24200.1 | 31.298 | 131 | 88 | 2 | 1 | 130 | 30 | 159 | 7.76e-14 | 66.2 |
| Msa1359350 | AT1G70030.2 | 30.827 | 133 | 55 | 3 | 1 | 130 | 38 | 136 | 8.52e-12 | 59.7 |
| Msa1359350 | AT1G70030.2 | 32.710 | 107 | 54 | 2 | 70 | 158 | 23 | 129 | 9.93e-11 | 57.0 |
| Msa1359350 | AT1G24230.1 | 27.660 | 141 | 88 | 3 | 3 | 142 | 33 | 160 | 2.38e-11 | 60.1 |
| Msa1359350 | AT1G70030.3 | 40.244 | 82 | 44 | 2 | 1 | 79 | 38 | 117 | 2.84e-11 | 57.8 |
Find 30 sgRNAs with CRISPR-Local
Find 103 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACTTTCTGAATGTCTTGA+AGG | 0.293908 | tig0016708:-1566 | Msa1359350:CDS |
| AACATCATTGACAAATTCTT+TGG | 0.313079 | tig0016708:+1274 | Msa1359350:intergenic |
| TAGAATTGATGATGCAAATC+TGG | 0.365588 | tig0016708:-1043 | Msa1359350:CDS |
| AGTAGTTCAATCTTGATATA+AGG | 0.418112 | tig0016708:+1372 | Msa1359350:intergenic |
| TAACTTTCTGAATGTGTTGA+AGG | 0.435901 | tig0016708:-1210 | Msa1359350:CDS |
| GAATCTTGGTGAATTATTGA+AGG | 0.480427 | tig0016708:-1417 | Msa1359350:CDS |
| AGGATTGACGCTGCGAATCT+TGG | 0.486810 | tig0016708:-1431 | Msa1359350:CDS |
| AGCTTGATTTCATATCCATC+AGG | 0.493606 | tig0016708:+955 | Msa1359350:intergenic |
| CAAGAAGGTCGGGATGTCCT+TGG | 0.495696 | tig0016708:+515 | Msa1359350:intergenic |
| AGCTTGATTTCAAATCCATC+GGG | 0.513708 | tig0016708:+1344 | Msa1359350:intergenic |
| TTATTGAAGGGATTATTTCA+AGG | 0.513778 | tig0016708:-1404 | Msa1359350:CDS |
| ATAATGAAGAAAATATTTGA+AGG | 0.513952 | tig0016708:-1015 | Msa1359350:CDS |
| AATCTTGGTGAATTATTGAA+GGG | 0.514858 | tig0016708:-1416 | Msa1359350:CDS |
| TGAAATCAAGCTTCCATTGG+AGG | 0.531076 | tig0016708:-944 | Msa1359350:CDS |
| AAGCTTGATTTCAAATCCAT+CGG | 0.533316 | tig0016708:+1343 | Msa1359350:intergenic |
| GTAAACTCGTCAAGAAGGTC+GGG | 0.535678 | tig0016708:+505 | Msa1359350:intergenic |
| AGAGATTCTTCCTCCTCCGA+TGG | 0.538054 | tig0016708:+1320 | Msa1359350:intergenic |
| AGTAAACTCGTCAAGAAGGT+CGG | 0.555699 | tig0016708:+504 | Msa1359350:intergenic |
| TTAAACTACTTCCTACCTGA+TGG | 0.558050 | tig0016708:-970 | Msa1359350:CDS |
| TGAAATTGTTCCTCCTCCAA+TGG | 0.571267 | tig0016708:+931 | Msa1359350:intergenic |
| AATGAGTAAACTCGTCAAGA+AGG | 0.575251 | tig0016708:+500 | Msa1359350:intergenic |
| AATCAAGCTTCCATCGGAGG+AGG | 0.577026 | tig0016708:-1330 | Msa1359350:CDS |
| ATATGAAATCAAGCTTCCAT+TGG | 0.577817 | tig0016708:-947 | Msa1359350:CDS |
| TTGAACTACTTCATGCCCGA+TGG | 0.579628 | tig0016708:-1359 | Msa1359350:CDS |
| TGAAATCAAGCTTCCATCGG+AGG | 0.587204 | tig0016708:-1333 | Msa1359350:CDS |
| TGAAGGATTACAAGAGACAA+AGG | 0.594478 | tig0016708:-1193 | Msa1359350:intron |
| AATCAAGCTTCCATTGGAGG+AGG | 0.611644 | tig0016708:-941 | Msa1359350:CDS |
| ATTTGAAATCAAGCTTCCAT+CGG | 0.624462 | tig0016708:-1336 | Msa1359350:CDS |
| TGATTTCATATCCATCAGGT+AGG | 0.626891 | tig0016708:+959 | Msa1359350:intergenic |
| TGAAGGATTACAAAACACAA+AGG | 0.632152 | tig0016708:-1549 | Msa1359350:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTAATAAATAAATTTAA+AGG | + | tig0016708:1348-1367 | Msa1359350:intergenic | 0.0% |
| !! | AAATTAATAAATAAATTTAA+AGG | + | tig0016708:1348-1367 | Msa1359350:intergenic | 0.0% |
| !! | ACAATATAATAAAAAAATAG+TGG | + | tig0016708:585-604 | Msa1359350:intergenic | 10.0% |
| !!! | TTTTTTATTATATTGTGAAA+TGG | - | tig0016708:589-608 | Msa1359350:intron | 10.0% |
| !!! | AATTTATTTTTGAATCTAAT+TGG | - | tig0016708:1252-1271 | Msa1359350:intron | 10.0% |
| !! | ACAATATAATAAAAAAATAG+TGG | + | tig0016708:585-604 | Msa1359350:intergenic | 10.0% |
| !!! | TTTTTTATTATATTGTGAAA+TGG | - | tig0016708:589-608 | Msa1359350:intron | 10.0% |
| !!! | AATTTATTTTTGAATCTAAT+TGG | - | tig0016708:1252-1271 | Msa1359350:intron | 10.0% |
| !! | GCAATATAATAAAAAAATAG+TGG | + | tig0016708:941-960 | Msa1359350:intergenic | 15.0% |
| !!! | TTTTTTATTATATTGCGAAA+TGG | - | tig0016708:945-964 | Msa1359350:CDS | 15.0% |
| !! | ATAATGAAGAAAATATTTGA+AGG | - | tig0016708:1078-1097 | Msa1359350:intron | 15.0% |
| !! | AATTGAACAATAACAATATT+TGG | + | tig0016708:1383-1402 | Msa1359350:intergenic | 15.0% |
| !! | GCAATATAATAAAAAAATAG+TGG | + | tig0016708:941-960 | Msa1359350:intergenic | 15.0% |
| !!! | TTTTTTATTATATTGCGAAA+TGG | - | tig0016708:945-964 | Msa1359350:CDS | 15.0% |
| !! | ATAATGAAGAAAATATTTGA+AGG | - | tig0016708:1078-1097 | Msa1359350:intron | 15.0% |
| !! | AATTGAACAATAACAATATT+TGG | + | tig0016708:1383-1402 | Msa1359350:intergenic | 15.0% |
| !!! | ATTTATTCAAGTTAATCAGA+GGG | - | tig0016708:850-869 | Msa1359350:intron | 20.0% |
| !!! | TGGATTCTATTAATTTTTGT+TGG | - | tig0016708:991-1010 | Msa1359350:CDS | 20.0% |
| !!! | TATTAATTTGTCTATCCATT+TGG | - | tig0016708:1018-1037 | Msa1359350:CDS | 20.0% |
| !! | ATTCTACAAAATATACCAAA+TGG | + | tig0016708:1036-1055 | Msa1359350:intergenic | 20.0% |
| !!! | ATTTATTCAAGTTAATCAGA+GGG | - | tig0016708:850-869 | Msa1359350:intron | 20.0% |
| !!! | TGGATTCTATTAATTTTTGT+TGG | - | tig0016708:991-1010 | Msa1359350:CDS | 20.0% |
| !!! | TATTAATTTGTCTATCCATT+TGG | - | tig0016708:1018-1037 | Msa1359350:CDS | 20.0% |
| !! | ATTCTACAAAATATACCAAA+TGG | + | tig0016708:1036-1055 | Msa1359350:intergenic | 20.0% |
| ! | AATCTTGGTGAATTATTGAA+GGG | - | tig0016708:677-696 | Msa1359350:intron | 25.0% |
| ! | TTATTGAAGGGATTATTTCA+AGG | - | tig0016708:689-708 | Msa1359350:intron | 25.0% |
| ! | AGTAGTTCAATCTTGATATA+AGG | + | tig0016708:724-743 | Msa1359350:intergenic | 25.0% |
| ! | AACATCATTGACAAATTCTT+TGG | + | tig0016708:822-841 | Msa1359350:intergenic | 25.0% |
| !! | GATTTATTCAAGTTAATCAG+AGG | - | tig0016708:849-868 | Msa1359350:intron | 25.0% |
| ! | CAAGTTCTTGAAAAAGATAA+AGG | - | tig0016708:1205-1224 | Msa1359350:CDS | 25.0% |
| ! | TTCATGTATGATCAATTTGA+AGG | - | tig0016708:1280-1299 | Msa1359350:CDS | 25.0% |
| ! | GAAGATAGGTAAAAATATTG+AGG | + | tig0016708:1439-1458 | Msa1359350:intergenic | 25.0% |
| ! | AGCATCAACATAAATATGTT+TGG | + | tig0016708:1517-1536 | Msa1359350:intergenic | 25.0% |
| ! | AATCTTGGTGAATTATTGAA+GGG | - | tig0016708:677-696 | Msa1359350:intron | 25.0% |
| ! | TTATTGAAGGGATTATTTCA+AGG | - | tig0016708:689-708 | Msa1359350:intron | 25.0% |
| ! | AGTAGTTCAATCTTGATATA+AGG | + | tig0016708:724-743 | Msa1359350:intergenic | 25.0% |
| ! | AACATCATTGACAAATTCTT+TGG | + | tig0016708:822-841 | Msa1359350:intergenic | 25.0% |
| !! | GATTTATTCAAGTTAATCAG+AGG | - | tig0016708:849-868 | Msa1359350:intron | 25.0% |
| ! | CAAGTTCTTGAAAAAGATAA+AGG | - | tig0016708:1205-1224 | Msa1359350:CDS | 25.0% |
| ! | TTCATGTATGATCAATTTGA+AGG | - | tig0016708:1280-1299 | Msa1359350:CDS | 25.0% |
| ! | GAAGATAGGTAAAAATATTG+AGG | + | tig0016708:1439-1458 | Msa1359350:intergenic | 25.0% |
| ! | AGCATCAACATAAATATGTT+TGG | + | tig0016708:1517-1536 | Msa1359350:intergenic | 25.0% |
| TGAAGGATTACAAAACACAA+AGG | - | tig0016708:544-563 | Msa1359350:intron | 30.0% | |
| GAATCTTGGTGAATTATTGA+AGG | - | tig0016708:676-695 | Msa1359350:intron | 30.0% | |
| AAGCTTGATTTCAAATCCAT+CGG | + | tig0016708:753-772 | Msa1359350:intergenic | 30.0% | |
| ! | ATTTGAAATCAAGCTTCCAT+CGG | - | tig0016708:757-776 | Msa1359350:intron | 30.0% |
| TAACTTTCTGAATGTGTTGA+AGG | - | tig0016708:883-902 | Msa1359350:intron | 30.0% | |
| !! | TAGAATTGATGATGCAAATC+TGG | - | tig0016708:1050-1069 | Msa1359350:intron | 30.0% |
| ATATGAAATCAAGCTTCCAT+TGG | - | tig0016708:1146-1165 | Msa1359350:intron | 30.0% | |
| GGAACAATTTCACGTTAAAT+TGG | - | tig0016708:1173-1192 | Msa1359350:intron | 30.0% | |
| ATTACAAGAACATCATTCAG+AGG | + | tig0016708:1319-1338 | Msa1359350:intergenic | 30.0% | |
| AAATTACAGTGCTAGAAGAT+AGG | + | tig0016708:1453-1472 | Msa1359350:intergenic | 30.0% | |
| TGTCATAATTGAACTTCTTC+AGG | - | tig0016708:1542-1561 | Msa1359350:intron | 30.0% | |
| TGAAGGATTACAAAACACAA+AGG | - | tig0016708:544-563 | Msa1359350:intron | 30.0% | |
| GAATCTTGGTGAATTATTGA+AGG | - | tig0016708:676-695 | Msa1359350:intron | 30.0% | |
| AAGCTTGATTTCAAATCCAT+CGG | + | tig0016708:753-772 | Msa1359350:intergenic | 30.0% | |
| ! | ATTTGAAATCAAGCTTCCAT+CGG | - | tig0016708:757-776 | Msa1359350:intron | 30.0% |
| TAACTTTCTGAATGTGTTGA+AGG | - | tig0016708:883-902 | Msa1359350:intron | 30.0% | |
| !! | TAGAATTGATGATGCAAATC+TGG | - | tig0016708:1050-1069 | Msa1359350:intron | 30.0% |
| ATATGAAATCAAGCTTCCAT+TGG | - | tig0016708:1146-1165 | Msa1359350:intron | 30.0% | |
| GGAACAATTTCACGTTAAAT+TGG | - | tig0016708:1173-1192 | Msa1359350:intron | 30.0% | |
| ATTACAAGAACATCATTCAG+AGG | + | tig0016708:1319-1338 | Msa1359350:intergenic | 30.0% | |
| AAATTACAGTGCTAGAAGAT+AGG | + | tig0016708:1453-1472 | Msa1359350:intergenic | 30.0% | |
| TGTCATAATTGAACTTCTTC+AGG | - | tig0016708:1542-1561 | Msa1359350:intron | 30.0% | |
| CAACTTTCTGAATGTCTTGA+AGG | - | tig0016708:527-546 | Msa1359350:CDS | 35.0% | |
| AGCTTGATTTCAAATCCATC+GGG | + | tig0016708:752-771 | Msa1359350:intergenic | 35.0% | |
| TGAAGGATTACAAGAGACAA+AGG | - | tig0016708:900-919 | Msa1359350:intron | 35.0% | |
| TTAAACTACTTCCTACCTGA+TGG | - | tig0016708:1123-1142 | Msa1359350:intron | 35.0% | |
| TGATTTCATATCCATCAGGT+AGG | + | tig0016708:1137-1156 | Msa1359350:intergenic | 35.0% | |
| AGCTTGATTTCATATCCATC+AGG | + | tig0016708:1141-1160 | Msa1359350:intergenic | 35.0% | |
| !! | GGTATGACTGATTTTGTACA+AGG | - | tig0016708:1226-1245 | Msa1359350:CDS | 35.0% |
| CAACTTTCTGAATGTCTTGA+AGG | - | tig0016708:527-546 | Msa1359350:CDS | 35.0% | |
| AGCTTGATTTCAAATCCATC+GGG | + | tig0016708:752-771 | Msa1359350:intergenic | 35.0% | |
| TGAAGGATTACAAGAGACAA+AGG | - | tig0016708:900-919 | Msa1359350:intron | 35.0% | |
| TTAAACTACTTCCTACCTGA+TGG | - | tig0016708:1123-1142 | Msa1359350:intron | 35.0% | |
| TGATTTCATATCCATCAGGT+AGG | + | tig0016708:1137-1156 | Msa1359350:intergenic | 35.0% | |
| AGCTTGATTTCATATCCATC+AGG | + | tig0016708:1141-1160 | Msa1359350:intergenic | 35.0% | |
| !! | GGTATGACTGATTTTGTACA+AGG | - | tig0016708:1226-1245 | Msa1359350:CDS | 35.0% |
| TGAAATCAAGCTTCCATTGG+AGG | - | tig0016708:1149-1168 | Msa1359350:intron | 40.0% | |
| TGAAATTGTTCCTCCTCCAA+TGG | + | tig0016708:1165-1184 | Msa1359350:intergenic | 40.0% | |
| ! | CAGGTTACTACACTTTTCCA+AGG | - | tig0016708:1561-1580 | Msa1359350:CDS | 40.0% |
| TGAAATCAAGCTTCCATTGG+AGG | - | tig0016708:1149-1168 | Msa1359350:intron | 40.0% | |
| TGAAATTGTTCCTCCTCCAA+TGG | + | tig0016708:1165-1184 | Msa1359350:intergenic | 40.0% | |
| ! | CAGGTTACTACACTTTTCCA+AGG | - | tig0016708:1561-1580 | Msa1359350:CDS | 40.0% |
| TTGAACTACTTCATGCCCGA+TGG | - | tig0016708:734-753 | Msa1359350:intron | 45.0% | |
| TGAAATCAAGCTTCCATCGG+AGG | - | tig0016708:760-779 | Msa1359350:intron | 45.0% | |
| AATCAAGCTTCCATTGGAGG+AGG | - | tig0016708:1152-1171 | Msa1359350:intron | 45.0% | |
| TTGAACTACTTCATGCCCGA+TGG | - | tig0016708:734-753 | Msa1359350:intron | 45.0% | |
| TGAAATCAAGCTTCCATCGG+AGG | - | tig0016708:760-779 | Msa1359350:intron | 45.0% | |
| AATCAAGCTTCCATTGGAGG+AGG | - | tig0016708:1152-1171 | Msa1359350:intron | 45.0% | |
| !!! | ATTTTTTTATTATATTTTGT+AGG | - | tig0016708:642-661 | Msa1359350:intron | 5.0% |
| !!! | TTTATTTTTAAATAATGAAA+TGG | - | tig0016708:971-990 | Msa1359350:CDS | 5.0% |
| !!! | ATTTTTTTATTATATTTTGT+AGG | - | tig0016708:642-661 | Msa1359350:intron | 5.0% |
| !!! | TTTATTTTTAAATAATGAAA+TGG | - | tig0016708:971-990 | Msa1359350:CDS | 5.0% |
| AGGATTGACGCTGCGAATCT+TGG | - | tig0016708:662-681 | Msa1359350:intron | 50.0% | |
| AATCAAGCTTCCATCGGAGG+AGG | - | tig0016708:763-782 | Msa1359350:intron | 50.0% | |
| AGAGATTCTTCCTCCTCCGA+TGG | + | tig0016708:776-795 | Msa1359350:intergenic | 50.0% | |
| AGGATTGACGCTGCGAATCT+TGG | - | tig0016708:662-681 | Msa1359350:intron | 50.0% | |
| AATCAAGCTTCCATCGGAGG+AGG | - | tig0016708:763-782 | Msa1359350:intron | 50.0% | |
| AGAGATTCTTCCTCCTCCGA+TGG | + | tig0016708:776-795 | Msa1359350:intergenic | 50.0% | |
| CAAGAAGGTCGGGATGTCCT+TGG | + | tig0016708:1581-1600 | Msa1359350:intergenic | 55.0% | |
| GACATCCCGACCTTCTTGAC+AGG | - | tig0016708:1583-1602 | Msa1359350:CDS | 55.0% | |
| CAAGAAGGTCGGGATGTCCT+TGG | + | tig0016708:1581-1600 | Msa1359350:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0016708 | gene | 513 | 1602 | 513 | ID=Msa1359350;Name=Msa1359350 |
| tig0016708 | mRNA | 513 | 1602 | 513 | ID=Msa1359350-mRNA-1;Parent=Msa1359350;Name=Msa1359350-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0|0|1|0.5|0.2|5|0|158 |
| tig0016708 | exon | 1550 | 1602 | 1550 | ID=Msa1359350-mRNA-1:exon:11320;Parent=Msa1359350-mRNA-1 |
| tig0016708 | exon | 1256 | 1451 | 1256 | ID=Msa1359350-mRNA-1:exon:11319;Parent=Msa1359350-mRNA-1 |
| tig0016708 | exon | 1194 | 1246 | 1194 | ID=Msa1359350-mRNA-1:exon:11318;Parent=Msa1359350-mRNA-1 |
| tig0016708 | exon | 930 | 1062 | 930 | ID=Msa1359350-mRNA-1:exon:11317;Parent=Msa1359350-mRNA-1 |
| tig0016708 | exon | 513 | 551 | 513 | ID=Msa1359350-mRNA-1:exon:11316;Parent=Msa1359350-mRNA-1 |
| tig0016708 | CDS | 1550 | 1602 | 1550 | ID=Msa1359350-mRNA-1:cds;Parent=Msa1359350-mRNA-1 |
| tig0016708 | CDS | 1256 | 1451 | 1256 | ID=Msa1359350-mRNA-1:cds;Parent=Msa1359350-mRNA-1 |
| tig0016708 | CDS | 1194 | 1246 | 1194 | ID=Msa1359350-mRNA-1:cds;Parent=Msa1359350-mRNA-1 |
| tig0016708 | CDS | 930 | 1062 | 930 | ID=Msa1359350-mRNA-1:cds;Parent=Msa1359350-mRNA-1 |
| tig0016708 | CDS | 513 | 551 | 513 | ID=Msa1359350-mRNA-1:cds;Parent=Msa1359350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
