Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1361160 | XP_024627503.1 | 50.622 | 241 | 84 | 4 | 3 | 209 | 111 | 350 | 5.62e-63 | 209 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1361160 | sp|Q5Z818|SPL12_ORYSJ | 35.526 | 152 | 70 | 2 | 3 | 126 | 140 | 291 | 3.33e-23 | 99.8 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1361160 | A0A072TSV9 | 47.253 | 273 | 83 | 5 | 1 | 212 | 89 | 361 | 1.63e-61 | 206 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1361160 | TF | SBP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1361160 | MtrunA17_Chr8g0377421 | 56.098 | 164 | 49 | 1 | 1 | 141 | 89 | 252 | 3.37e-53 | 172 |
| Msa1361160 | MtrunA17_Chr3g0122411 | 56.911 | 123 | 48 | 1 | 19 | 141 | 168 | 285 | 1.64e-39 | 140 |
| Msa1361160 | MtrunA17_Chr8g0377401 | 52.128 | 94 | 22 | 1 | 25 | 95 | 143 | 236 | 2.31e-24 | 97.1 |
| Msa1361160 | MtrunA17_Chr8g0360361 | 58.108 | 74 | 31 | 0 | 36 | 109 | 80 | 153 | 4.48e-24 | 94.4 |
| Msa1361160 | MtrunA17_Chr3g0132091 | 47.959 | 98 | 49 | 1 | 35 | 132 | 87 | 182 | 3.91e-23 | 95.1 |
| Msa1361160 | MtrunA17_Chr4g0061651 | 52.778 | 72 | 32 | 1 | 35 | 106 | 137 | 206 | 3.71e-20 | 87.8 |
| Msa1361160 | MtrunA17_Chr8g0386271 | 51.111 | 90 | 41 | 2 | 35 | 124 | 113 | 199 | 4.65e-20 | 87.4 |
| Msa1361160 | MtrunA17_Chr7g0231911 | 53.425 | 73 | 34 | 0 | 33 | 105 | 161 | 233 | 1.11e-19 | 85.5 |
| Msa1361160 | MtrunA17_Chr7g0224821 | 54.545 | 66 | 30 | 0 | 35 | 100 | 91 | 156 | 1.73e-19 | 85.5 |
| Msa1361160 | MtrunA17_Chr4g0046991 | 57.143 | 63 | 27 | 0 | 32 | 94 | 84 | 146 | 4.24e-19 | 80.5 |
| Msa1361160 | MtrunA17_Chr1g0162871 | 51.351 | 74 | 36 | 0 | 32 | 105 | 115 | 188 | 6.49e-19 | 84.7 |
| Msa1361160 | MtrunA17_Chr7g0258471 | 50.633 | 79 | 39 | 0 | 36 | 114 | 157 | 235 | 7.70e-19 | 84.0 |
| Msa1361160 | MtrunA17_Chr2g0302791 | 53.731 | 67 | 31 | 0 | 33 | 99 | 151 | 217 | 8.43e-19 | 84.3 |
| Msa1361160 | MtrunA17_Chr2g0308321 | 56.250 | 64 | 26 | 1 | 31 | 94 | 183 | 244 | 3.84e-18 | 82.4 |
| Msa1361160 | MtrunA17_Chr5g0420051 | 56.452 | 62 | 27 | 0 | 33 | 94 | 193 | 254 | 8.04e-18 | 81.3 |
| Msa1361160 | MtrunA17_Chr1g0194121 | 52.174 | 69 | 33 | 0 | 32 | 100 | 158 | 226 | 8.11e-18 | 81.6 |
| Msa1361160 | MtrunA17_Chr7g0270541 | 49.315 | 73 | 37 | 0 | 33 | 105 | 157 | 229 | 3.86e-17 | 79.7 |
| Msa1361160 | MtrunA17_Chr8g0334671 | 56.923 | 65 | 27 | 1 | 36 | 99 | 202 | 266 | 1.39e-16 | 77.0 |
| Msa1361160 | MtrunA17_Chr2g0282521 | 54.237 | 59 | 27 | 0 | 36 | 94 | 79 | 137 | 3.25e-16 | 72.8 |
| Msa1361160 | MtrunA17_Chr2g0286661 | 41.860 | 86 | 44 | 1 | 36 | 115 | 118 | 203 | 4.51e-15 | 73.6 |
| Msa1361160 | MtrunA17_Chr8g0377431 | 41.667 | 96 | 34 | 1 | 3 | 76 | 111 | 206 | 2.14e-12 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1361160 | AT5G43270.3 | 60.000 | 75 | 27 | 1 | 23 | 97 | 174 | 245 | 9.66e-24 | 98.2 |
| Msa1361160 | AT5G43270.1 | 60.000 | 75 | 27 | 1 | 23 | 97 | 174 | 245 | 9.66e-24 | 98.2 |
| Msa1361160 | AT5G43270.2 | 60.000 | 75 | 27 | 1 | 23 | 97 | 174 | 245 | 9.66e-24 | 98.2 |
| Msa1361160 | AT1G27370.6 | 63.235 | 68 | 23 | 1 | 33 | 100 | 188 | 253 | 1.83e-22 | 94.0 |
| Msa1361160 | AT1G27370.1 | 63.235 | 68 | 23 | 1 | 33 | 100 | 188 | 253 | 3.09e-22 | 93.6 |
| Msa1361160 | AT1G27370.5 | 63.235 | 68 | 23 | 1 | 33 | 100 | 188 | 253 | 3.09e-22 | 93.6 |
| Msa1361160 | AT1G27370.3 | 63.235 | 68 | 23 | 1 | 33 | 100 | 188 | 253 | 3.09e-22 | 93.6 |
| Msa1361160 | AT1G27370.2 | 63.235 | 68 | 23 | 1 | 33 | 100 | 188 | 253 | 3.09e-22 | 93.6 |
| Msa1361160 | AT1G27370.4 | 63.235 | 68 | 23 | 1 | 33 | 100 | 188 | 253 | 3.09e-22 | 93.6 |
| Msa1361160 | AT1G27370.7 | 63.235 | 68 | 23 | 1 | 33 | 100 | 188 | 253 | 3.09e-22 | 93.6 |
| Msa1361160 | AT3G60030.1 | 48.750 | 80 | 41 | 0 | 32 | 111 | 138 | 217 | 1.96e-20 | 89.7 |
| Msa1361160 | AT1G69170.1 | 59.677 | 62 | 25 | 0 | 33 | 94 | 136 | 197 | 2.02e-19 | 85.9 |
| Msa1361160 | AT1G27360.2 | 57.353 | 68 | 27 | 1 | 33 | 100 | 187 | 252 | 3.00e-19 | 85.5 |
| Msa1361160 | AT1G27360.1 | 57.353 | 68 | 27 | 1 | 33 | 100 | 187 | 252 | 3.00e-19 | 85.5 |
| Msa1361160 | AT1G27360.3 | 57.353 | 68 | 27 | 1 | 33 | 100 | 187 | 252 | 3.00e-19 | 85.5 |
| Msa1361160 | AT1G27360.4 | 57.353 | 68 | 27 | 1 | 33 | 100 | 187 | 252 | 3.00e-19 | 85.5 |
| Msa1361160 | AT2G47070.1 | 56.716 | 67 | 29 | 0 | 32 | 98 | 117 | 183 | 3.31e-19 | 85.9 |
| Msa1361160 | AT1G53160.3 | 53.521 | 71 | 33 | 0 | 36 | 106 | 69 | 139 | 3.55e-19 | 81.6 |
| Msa1361160 | AT1G53160.2 | 53.521 | 71 | 33 | 0 | 36 | 106 | 69 | 139 | 3.97e-19 | 81.6 |
| Msa1361160 | AT1G53160.1 | 53.521 | 71 | 33 | 0 | 36 | 106 | 69 | 139 | 3.97e-19 | 81.6 |
| Msa1361160 | AT5G50570.1 | 54.545 | 66 | 30 | 0 | 35 | 100 | 115 | 180 | 1.67e-18 | 83.2 |
| Msa1361160 | AT5G50570.2 | 54.545 | 66 | 30 | 0 | 35 | 100 | 115 | 180 | 1.67e-18 | 83.2 |
| Msa1361160 | AT5G50670.1 | 54.545 | 66 | 30 | 0 | 35 | 100 | 115 | 180 | 1.67e-18 | 83.2 |
| Msa1361160 | AT5G50670.2 | 54.545 | 66 | 30 | 0 | 35 | 100 | 115 | 180 | 1.67e-18 | 83.2 |
| Msa1361160 | AT2G42200.1 | 56.923 | 65 | 28 | 0 | 36 | 100 | 89 | 153 | 2.71e-18 | 82.4 |
| Msa1361160 | AT3G15270.1 | 52.941 | 68 | 32 | 0 | 32 | 99 | 74 | 141 | 3.80e-18 | 79.0 |
| Msa1361160 | AT2G33810.1 | 55.556 | 63 | 28 | 0 | 32 | 94 | 65 | 127 | 4.47e-18 | 77.4 |
| Msa1361160 | AT1G76580.3 | 51.282 | 78 | 33 | 1 | 25 | 102 | 123 | 195 | 4.84e-18 | 82.4 |
| Msa1361160 | AT1G76580.2 | 51.282 | 78 | 33 | 1 | 25 | 102 | 123 | 195 | 4.87e-18 | 82.4 |
| Msa1361160 | AT1G76580.1 | 51.282 | 78 | 33 | 1 | 25 | 102 | 123 | 195 | 6.46e-18 | 82.4 |
| Msa1361160 | AT1G20980.1 | 35.714 | 154 | 96 | 2 | 33 | 183 | 132 | 285 | 8.70e-18 | 82.0 |
| Msa1361160 | AT1G02065.1 | 51.351 | 74 | 35 | 1 | 36 | 109 | 203 | 275 | 8.94e-17 | 77.8 |
| Msa1361160 | AT3G57920.1 | 49.231 | 65 | 33 | 0 | 36 | 100 | 74 | 138 | 4.55e-14 | 70.5 |
| Msa1361160 | AT2G47070.2 | 56.604 | 53 | 23 | 0 | 46 | 98 | 2 | 54 | 1.73e-13 | 69.3 |
| Msa1361160 | AT5G18830.1 | 47.458 | 59 | 31 | 0 | 36 | 94 | 153 | 211 | 5.25e-12 | 65.1 |
| Msa1361160 | AT5G18830.2 | 47.458 | 59 | 31 | 0 | 36 | 94 | 153 | 211 | 5.36e-12 | 65.1 |
| Msa1361160 | AT5G18830.3 | 47.458 | 59 | 31 | 0 | 36 | 94 | 153 | 211 | 5.42e-12 | 65.1 |
Find 25 sgRNAs with CRISPR-Local
Find 214 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGACTTGATTGGACAGATTC+AGG | 0.307609 | tig0017374:-6134 | None:intergenic |
| CAGATTCAGGATGATATTTA+CGG | 0.380220 | tig0017374:-6121 | None:intergenic |
| ACGAAGCTGATTGACTTGAT+TGG | 0.388694 | tig0017374:-6145 | None:intergenic |
| CATCGAACTCAAACAGATCA+TGG | 0.413681 | tig0017374:-6049 | None:intergenic |
| CTGACTCATTGCATGAGTTA+AGG | 0.427005 | tig0017374:-7375 | None:intergenic |
| TTCATCAGAAATTCAGATCA+TGG | 0.442779 | tig0017374:+7412 | Msa1361160:CDS |
| GCAGACTTTGAATTAGCAAA+TGG | 0.463595 | tig0017374:-7016 | None:intergenic |
| TATCCAATGGTGGTTATAGC+TGG | 0.495803 | tig0017374:+5808 | Msa1361160:CDS |
| ATCTTGTGTCATCTAAGTAT+TGG | 0.516306 | tig0017374:+5653 | Msa1361160:CDS |
| AGTTAAGGCTTGAAAAGCAC+TGG | 0.524107 | tig0017374:-7360 | None:intergenic |
| TAGTCACAGTACTTGTGGGG+GGG | 0.552379 | tig0017374:-7089 | None:intergenic |
| ACACCAGCTATAACCACCAT+TGG | 0.565825 | tig0017374:-5811 | None:intergenic |
| ATTAGAATGTTCTAGAAACA+TGG | 0.567393 | tig0017374:-7330 | None:intergenic |
| GGAAAGAAATGTAAGTCCAA+TGG | 0.580565 | tig0017374:+5674 | Msa1361160:CDS |
| AACTTCTGTCATCAATCCGT+GGG | 0.587133 | tig0017374:+7289 | Msa1361160:CDS |
| CAACTTCTGTCATCAATCCG+TGG | 0.587589 | tig0017374:+7288 | Msa1361160:CDS |
| GCTTCGTCTTCTTCATCCTG+TGG | 0.600513 | tig0017374:+6161 | Msa1361160:CDS |
| AGTCTGCTACAAATTTAGCC+TGG | 0.601473 | tig0017374:+7032 | Msa1361160:CDS |
| AAGTCATTCAAAATATCCAA+TGG | 0.603959 | tig0017374:+5795 | Msa1361160:CDS |
| AATGGTGGTTATAGCTGGTG+TGG | 0.622477 | tig0017374:+5813 | Msa1361160:CDS |
| GCATAGTCACAGTACTTGTG+GGG | 0.624962 | tig0017374:-7092 | None:intergenic |
| TTAGTCGCATATGAATCCCA+CGG | 0.643903 | tig0017374:-7305 | None:intergenic |
| CATAGTCACAGTACTTGTGG+GGG | 0.656382 | tig0017374:-7091 | None:intergenic |
| TCATTCAAAATATCCAATGG+TGG | 0.661479 | tig0017374:+5798 | Msa1361160:CDS |
| ATAGTCACAGTACTTGTGGG+GGG | 0.670761 | tig0017374:-7090 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTATTTTTTTTTTTTAATGA+TGG | + | tig0017374:5921-5940 | Msa1361160:intron | 10.0% |
| !!! | GTATTTTTTTTTTTTAATGA+TGG | + | tig0017374:5921-5940 | Msa1361160:intron | 10.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | - | tig0017374:7072-7091 | None:intergenic | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | - | tig0017374:7072-7091 | None:intergenic | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | - | tig0017374:7072-7091 | None:intergenic | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | - | tig0017374:7072-7091 | None:intergenic | 100.0% |
| !! | TGTTTAGATATAATTGATAT+AGG | + | tig0017374:5890-5909 | Msa1361160:intron | 15.0% |
| !! | ATAATTTATTATTGTCAGAA+GGG | + | tig0017374:6596-6615 | Msa1361160:intron | 15.0% |
| !! | AAATAATTATCATGATTGTT+TGG | + | tig0017374:6732-6751 | Msa1361160:intron | 15.0% |
| !! | TGTTTAGATATAATTGATAT+AGG | + | tig0017374:5890-5909 | Msa1361160:intron | 15.0% |
| !! | ATAATTTATTATTGTCAGAA+GGG | + | tig0017374:6596-6615 | Msa1361160:intron | 15.0% |
| !! | AAATAATTATCATGATTGTT+TGG | + | tig0017374:6732-6751 | Msa1361160:intron | 15.0% |
| !!! | TTTTATTTCATGGATCTTAT+TGG | + | tig0017374:6416-6435 | Msa1361160:intron | 20.0% |
| !! | GATAATTTATTATTGTCAGA+AGG | + | tig0017374:6595-6614 | Msa1361160:intron | 20.0% |
| !!! | ATCAAGTCTTTAAAGAATTA+AGG | + | tig0017374:6681-6700 | Msa1361160:intron | 20.0% |
| !!! | AGTTGTATTTTTACTAAATC+AGG | - | tig0017374:6833-6852 | None:intergenic | 20.0% |
| !!! | TTCAGTCTTCTAATATATTT+TGG | + | tig0017374:6965-6984 | Msa1361160:intron | 20.0% |
| !! | ACAAAAAATGTGAAATAACT+TGG | - | tig0017374:7177-7196 | None:intergenic | 20.0% |
| !!! | TTTTATTTCATGGATCTTAT+TGG | + | tig0017374:6416-6435 | Msa1361160:intron | 20.0% |
| !! | GATAATTTATTATTGTCAGA+AGG | + | tig0017374:6595-6614 | Msa1361160:intron | 20.0% |
| !!! | ATCAAGTCTTTAAAGAATTA+AGG | + | tig0017374:6681-6700 | Msa1361160:intron | 20.0% |
| !!! | AGTTGTATTTTTACTAAATC+AGG | - | tig0017374:6833-6852 | None:intergenic | 20.0% |
| !!! | TTCAGTCTTCTAATATATTT+TGG | + | tig0017374:6965-6984 | Msa1361160:intron | 20.0% |
| !! | ACAAAAAATGTGAAATAACT+TGG | - | tig0017374:7177-7196 | None:intergenic | 20.0% |
| !!! | CAAAAACCTATCTTTTTCAA+GGG | + | tig0017374:5630-5649 | Msa1361160:CDS | 25.0% |
| ! | AAGTCATTCAAAATATCCAA+TGG | + | tig0017374:5795-5814 | Msa1361160:CDS | 25.0% |
| !!! | TTCTGCTTGTTATCTATTAT+TGG | + | tig0017374:6194-6213 | Msa1361160:intron | 25.0% |
| ! | AATGAACATTAAATGTGATG+TGG | + | tig0017374:6330-6349 | Msa1361160:intron | 25.0% |
| !!! | TCGACTTTTCTTTTATTTCA+TGG | + | tig0017374:6406-6425 | Msa1361160:intron | 25.0% |
| ! | AATCTAGTTAGTAAAGACTT+TGG | - | tig0017374:6786-6805 | None:intergenic | 25.0% |
| !!! | ACTAAATCAGGTTTTAAAGA+TGG | - | tig0017374:6821-6840 | None:intergenic | 25.0% |
| ! | TATAACAAAACAACCAAAAG+TGG | - | tig0017374:6896-6915 | None:intergenic | 25.0% |
| !!! | GTTTTGTTATAGTTAATTGC+AGG | + | tig0017374:6905-6924 | Msa1361160:intron | 25.0% |
| !!! | TGAATTTTTTTAACTCTTGC+AGG | + | tig0017374:7199-7218 | Msa1361160:intron | 25.0% |
| !!! | ATTAGAATGTTCTAGAAACA+TGG | - | tig0017374:7333-7352 | None:intergenic | 25.0% |
| !!! | CAAAAACCTATCTTTTTCAA+GGG | + | tig0017374:5630-5649 | Msa1361160:CDS | 25.0% |
| ! | AAGTCATTCAAAATATCCAA+TGG | + | tig0017374:5795-5814 | Msa1361160:CDS | 25.0% |
| !!! | TTCTGCTTGTTATCTATTAT+TGG | + | tig0017374:6194-6213 | Msa1361160:intron | 25.0% |
| ! | AATGAACATTAAATGTGATG+TGG | + | tig0017374:6330-6349 | Msa1361160:intron | 25.0% |
| !!! | TCGACTTTTCTTTTATTTCA+TGG | + | tig0017374:6406-6425 | Msa1361160:intron | 25.0% |
| ! | AATCTAGTTAGTAAAGACTT+TGG | - | tig0017374:6786-6805 | None:intergenic | 25.0% |
| !!! | ACTAAATCAGGTTTTAAAGA+TGG | - | tig0017374:6821-6840 | None:intergenic | 25.0% |
| ! | TATAACAAAACAACCAAAAG+TGG | - | tig0017374:6896-6915 | None:intergenic | 25.0% |
| !!! | GTTTTGTTATAGTTAATTGC+AGG | + | tig0017374:6905-6924 | Msa1361160:intron | 25.0% |
| !!! | TGAATTTTTTTAACTCTTGC+AGG | + | tig0017374:7199-7218 | Msa1361160:intron | 25.0% |
| !!! | ATTAGAATGTTCTAGAAACA+TGG | - | tig0017374:7333-7352 | None:intergenic | 25.0% |
| ! | CCTTGAAAAAGATAGGTTTT+TGG | - | tig0017374:5632-5651 | None:intergenic | 30.0% |
| !! | CCAAAAACCTATCTTTTTCA+AGG | + | tig0017374:5629-5648 | Msa1361160:CDS | 30.0% |
| ATCTTGTGTCATCTAAGTAT+TGG | + | tig0017374:5653-5672 | Msa1361160:CDS | 30.0% | |
| TCATTCAAAATATCCAATGG+TGG | + | tig0017374:5798-5817 | Msa1361160:CDS | 30.0% | |
| ! | GATTTTGCAAAAAATGTAGC+AGG | + | tig0017374:5842-5861 | Msa1361160:CDS | 30.0% |
| CAGATTCAGGATGATATTTA+CGG | - | tig0017374:6124-6143 | None:intergenic | 30.0% | |
| AATAGATAACAAGCAGAAAC+TGG | - | tig0017374:6192-6211 | None:intergenic | 30.0% | |
| ! | AATGTTCATTGTAACTTGCA+TGG | - | tig0017374:6320-6339 | None:intergenic | 30.0% |
| TGGATACTGGATATAGTTAT+AGG | + | tig0017374:6642-6661 | Msa1361160:intron | 30.0% | |
| !!! | ATATATTTTGGTTCTGCAGA+TGG | + | tig0017374:6977-6996 | Msa1361160:intron | 30.0% |
| ATAACTTGGATTGATACTCT+TGG | - | tig0017374:7163-7182 | None:intergenic | 30.0% | |
| TTCATCAGAAATTCAGATCA+TGG | + | tig0017374:7412-7431 | Msa1361160:CDS | 30.0% | |
| ! | CCTTGAAAAAGATAGGTTTT+TGG | - | tig0017374:5632-5651 | None:intergenic | 30.0% |
| !! | CCAAAAACCTATCTTTTTCA+AGG | + | tig0017374:5629-5648 | Msa1361160:CDS | 30.0% |
| ATCTTGTGTCATCTAAGTAT+TGG | + | tig0017374:5653-5672 | Msa1361160:CDS | 30.0% | |
| TCATTCAAAATATCCAATGG+TGG | + | tig0017374:5798-5817 | Msa1361160:CDS | 30.0% | |
| ! | GATTTTGCAAAAAATGTAGC+AGG | + | tig0017374:5842-5861 | Msa1361160:CDS | 30.0% |
| CAGATTCAGGATGATATTTA+CGG | - | tig0017374:6124-6143 | None:intergenic | 30.0% | |
| AATAGATAACAAGCAGAAAC+TGG | - | tig0017374:6192-6211 | None:intergenic | 30.0% | |
| ! | AATGTTCATTGTAACTTGCA+TGG | - | tig0017374:6320-6339 | None:intergenic | 30.0% |
| TGGATACTGGATATAGTTAT+AGG | + | tig0017374:6642-6661 | Msa1361160:intron | 30.0% | |
| !!! | ATATATTTTGGTTCTGCAGA+TGG | + | tig0017374:6977-6996 | Msa1361160:intron | 30.0% |
| ATAACTTGGATTGATACTCT+TGG | - | tig0017374:7163-7182 | None:intergenic | 30.0% | |
| TTCATCAGAAATTCAGATCA+TGG | + | tig0017374:7412-7431 | Msa1361160:CDS | 30.0% | |
| CAAGATCCCTTGAAAAAGAT+AGG | - | tig0017374:5639-5658 | None:intergenic | 35.0% | |
| GGAAAGAAATGTAAGTCCAA+TGG | + | tig0017374:5674-5693 | Msa1361160:CDS | 35.0% | |
| GATAATCTTTGGCCAATGAA+AGG | - | tig0017374:5753-5772 | None:intergenic | 35.0% | |
| ACGTATGCGATGATAATCTT+TGG | - | tig0017374:5764-5783 | None:intergenic | 35.0% | |
| !!! | AACAAACTTGCTGTCTTTTC+TGG | + | tig0017374:5990-6009 | Msa1361160:intron | 35.0% |
| ATACAAGGGGTTCAAAAGAT+AGG | - | tig0017374:6379-6398 | None:intergenic | 35.0% | |
| AACATGACTATTACTGTGCA+TGG | - | tig0017374:6546-6565 | None:intergenic | 35.0% | |
| ! | GATGTTGCTATTAGAGTTGT+GGG | + | tig0017374:6618-6637 | Msa1361160:intron | 35.0% |
| ! | GTTAGTAAAGACTTTGGCTT+AGG | - | tig0017374:6780-6799 | None:intergenic | 35.0% |
| GTCAAAACTTAGACCAAAGA+AGG | + | tig0017374:6869-6888 | Msa1361160:intron | 35.0% | |
| GCAGACTTTGAATTAGCAAA+TGG | - | tig0017374:7019-7038 | None:intergenic | 35.0% | |
| CAAGGACTTTGGATGTAAAA+TGG | - | tig0017374:7137-7156 | None:intergenic | 35.0% | |
| CAAGATCCCTTGAAAAAGAT+AGG | - | tig0017374:5639-5658 | None:intergenic | 35.0% | |
| GGAAAGAAATGTAAGTCCAA+TGG | + | tig0017374:5674-5693 | Msa1361160:CDS | 35.0% | |
| GATAATCTTTGGCCAATGAA+AGG | - | tig0017374:5753-5772 | None:intergenic | 35.0% | |
| ACGTATGCGATGATAATCTT+TGG | - | tig0017374:5764-5783 | None:intergenic | 35.0% | |
| !!! | AACAAACTTGCTGTCTTTTC+TGG | + | tig0017374:5990-6009 | Msa1361160:intron | 35.0% |
| ATACAAGGGGTTCAAAAGAT+AGG | - | tig0017374:6379-6398 | None:intergenic | 35.0% | |
| AACATGACTATTACTGTGCA+TGG | - | tig0017374:6546-6565 | None:intergenic | 35.0% | |
| ! | GATGTTGCTATTAGAGTTGT+GGG | + | tig0017374:6618-6637 | Msa1361160:intron | 35.0% |
| ! | GTTAGTAAAGACTTTGGCTT+AGG | - | tig0017374:6780-6799 | None:intergenic | 35.0% |
| GTCAAAACTTAGACCAAAGA+AGG | + | tig0017374:6869-6888 | Msa1361160:intron | 35.0% | |
| GCAGACTTTGAATTAGCAAA+TGG | - | tig0017374:7019-7038 | None:intergenic | 35.0% | |
| CAAGGACTTTGGATGTAAAA+TGG | - | tig0017374:7137-7156 | None:intergenic | 35.0% | |
| ACGTCATATGTTCTGACCAT+TGG | - | tig0017374:5693-5712 | None:intergenic | 40.0% | |
| AGGTCACACAACTTTCAAAC+AGG | - | tig0017374:5727-5746 | None:intergenic | 40.0% | |
| TATCCAATGGTGGTTATAGC+TGG | + | tig0017374:5808-5827 | Msa1361160:CDS | 40.0% | |
| !!! | AACTTGCTGTCTTTTCTGGA+TGG | + | tig0017374:5994-6013 | Msa1361160:intron | 40.0% |
| CATCGAACTCAAACAGATCA+TGG | - | tig0017374:6052-6071 | None:intergenic | 40.0% | |
| TGACTTGATTGGACAGATTC+AGG | - | tig0017374:6137-6156 | None:intergenic | 40.0% | |
| !! | ACGAAGCTGATTGACTTGAT+TGG | - | tig0017374:6148-6167 | None:intergenic | 40.0% |
| TAATACCAGTAAGCGTGATG+TGG | + | tig0017374:6250-6269 | Msa1361160:intron | 40.0% | |
| AAGTCGAGCAGAACATACAA+GGG | - | tig0017374:6393-6412 | None:intergenic | 40.0% | |
| AAAGTCGAGCAGAACATACA+AGG | - | tig0017374:6394-6413 | None:intergenic | 40.0% | |
| TAACTGTCAACACGTTTCGA+TGG | + | tig0017374:6444-6463 | Msa1361160:intron | 40.0% | |
| AACACGTTTCGATGGTAAAG+AGG | + | tig0017374:6452-6471 | Msa1361160:intron | 40.0% | |
| ! | GGATGTTGCTATTAGAGTTG+TGG | + | tig0017374:6617-6636 | Msa1361160:intron | 40.0% |
| ! | TTGCTATTAGAGTTGTGGGA+TGG | + | tig0017374:6622-6641 | Msa1361160:intron | 40.0% |
| TTTGTATCGTGCCGTAATCA+GGG | - | tig0017374:6715-6734 | None:intergenic | 40.0% | |
| ATTTGTATCGTGCCGTAATC+AGG | - | tig0017374:6716-6735 | None:intergenic | 40.0% | |
| AACCAAAAGTGGACCTTCTT+TGG | - | tig0017374:6885-6904 | None:intergenic | 40.0% | |
| AGTCTGCTACAAATTTAGCC+TGG | + | tig0017374:7032-7051 | Msa1361160:CDS | 40.0% | |
| AGCATAGTCACAGTACTTGT+GGG | - | tig0017374:7096-7115 | None:intergenic | 40.0% | |
| AAGCATAGTCACAGTACTTG+TGG | - | tig0017374:7097-7116 | None:intergenic | 40.0% | |
| GATTGATACTCTTGGTTGCA+AGG | - | tig0017374:7155-7174 | None:intergenic | 40.0% | |
| AACTTCTGTCATCAATCCGT+GGG | + | tig0017374:7289-7308 | Msa1361160:CDS | 40.0% | |
| TTAGTCGCATATGAATCCCA+CGG | - | tig0017374:7308-7327 | None:intergenic | 40.0% | |
| ! | AGTTAAGGCTTGAAAAGCAC+TGG | - | tig0017374:7363-7382 | None:intergenic | 40.0% |
| CTGACTCATTGCATGAGTTA+AGG | - | tig0017374:7378-7397 | None:intergenic | 40.0% | |
| ACGTCATATGTTCTGACCAT+TGG | - | tig0017374:5693-5712 | None:intergenic | 40.0% | |
| AGGTCACACAACTTTCAAAC+AGG | - | tig0017374:5727-5746 | None:intergenic | 40.0% | |
| TATCCAATGGTGGTTATAGC+TGG | + | tig0017374:5808-5827 | Msa1361160:CDS | 40.0% | |
| !!! | AACTTGCTGTCTTTTCTGGA+TGG | + | tig0017374:5994-6013 | Msa1361160:intron | 40.0% |
| CATCGAACTCAAACAGATCA+TGG | - | tig0017374:6052-6071 | None:intergenic | 40.0% | |
| TGACTTGATTGGACAGATTC+AGG | - | tig0017374:6137-6156 | None:intergenic | 40.0% | |
| !! | ACGAAGCTGATTGACTTGAT+TGG | - | tig0017374:6148-6167 | None:intergenic | 40.0% |
| TAATACCAGTAAGCGTGATG+TGG | + | tig0017374:6250-6269 | Msa1361160:intron | 40.0% | |
| AAGTCGAGCAGAACATACAA+GGG | - | tig0017374:6393-6412 | None:intergenic | 40.0% | |
| AAAGTCGAGCAGAACATACA+AGG | - | tig0017374:6394-6413 | None:intergenic | 40.0% | |
| TAACTGTCAACACGTTTCGA+TGG | + | tig0017374:6444-6463 | Msa1361160:intron | 40.0% | |
| AACACGTTTCGATGGTAAAG+AGG | + | tig0017374:6452-6471 | Msa1361160:intron | 40.0% | |
| ! | GGATGTTGCTATTAGAGTTG+TGG | + | tig0017374:6617-6636 | Msa1361160:intron | 40.0% |
| ! | TTGCTATTAGAGTTGTGGGA+TGG | + | tig0017374:6622-6641 | Msa1361160:intron | 40.0% |
| TTTGTATCGTGCCGTAATCA+GGG | - | tig0017374:6715-6734 | None:intergenic | 40.0% | |
| ATTTGTATCGTGCCGTAATC+AGG | - | tig0017374:6716-6735 | None:intergenic | 40.0% | |
| AACCAAAAGTGGACCTTCTT+TGG | - | tig0017374:6885-6904 | None:intergenic | 40.0% | |
| AGTCTGCTACAAATTTAGCC+TGG | + | tig0017374:7032-7051 | Msa1361160:CDS | 40.0% | |
| AGCATAGTCACAGTACTTGT+GGG | - | tig0017374:7096-7115 | None:intergenic | 40.0% | |
| AAGCATAGTCACAGTACTTG+TGG | - | tig0017374:7097-7116 | None:intergenic | 40.0% | |
| GATTGATACTCTTGGTTGCA+AGG | - | tig0017374:7155-7174 | None:intergenic | 40.0% | |
| AACTTCTGTCATCAATCCGT+GGG | + | tig0017374:7289-7308 | Msa1361160:CDS | 40.0% | |
| TTAGTCGCATATGAATCCCA+CGG | - | tig0017374:7308-7327 | None:intergenic | 40.0% | |
| ! | AGTTAAGGCTTGAAAAGCAC+TGG | - | tig0017374:7363-7382 | None:intergenic | 40.0% |
| CTGACTCATTGCATGAGTTA+AGG | - | tig0017374:7378-7397 | None:intergenic | 40.0% | |
| CTTTCAAACAGGCAGCATGA+CGG | - | tig0017374:5716-5735 | None:intergenic | 45.0% | |
| GTGTGACCTTGACCTTTCAT+TGG | + | tig0017374:5738-5757 | Msa1361160:intron | 45.0% | |
| CTTTGGCCAATGAAAGGTCA+AGG | - | tig0017374:5747-5766 | None:intergenic | 45.0% | |
| ACACCAGCTATAACCACCAT+TGG | - | tig0017374:5814-5833 | None:intergenic | 45.0% | |
| AATGGTGGTTATAGCTGGTG+TGG | + | tig0017374:5813-5832 | Msa1361160:CDS | 45.0% | |
| GCAGAAACTGGTATTACCAC+AGG | - | tig0017374:6180-6199 | None:intergenic | 45.0% | |
| AGTCGAGCAGAACATACAAG+GGG | - | tig0017374:6392-6411 | None:intergenic | 45.0% | |
| TAGAGTTGTGGGATGGATAC+TGG | + | tig0017374:6629-6648 | Msa1361160:intron | 45.0% | |
| AGGTAGCATACCCCTGATTA+CGG | + | tig0017374:6701-6720 | Msa1361160:intron | 45.0% | |
| TTGTATCGTGCCGTAATCAG+GGG | - | tig0017374:6714-6733 | None:intergenic | 45.0% | |
| ! | GACCAAAGAAGGTCCACTTT+TGG | + | tig0017374:6880-6899 | Msa1361160:intron | 45.0% |
| ATAGTCACAGTACTTGTGGG+GGG | - | tig0017374:7093-7112 | None:intergenic | 45.0% | |
| CATAGTCACAGTACTTGTGG+GGG | - | tig0017374:7094-7113 | None:intergenic | 45.0% | |
| GCATAGTCACAGTACTTGTG+GGG | - | tig0017374:7095-7114 | None:intergenic | 45.0% | |
| ACTCTTGGTTGCAAGGACTT+TGG | - | tig0017374:7148-7167 | None:intergenic | 45.0% | |
| CAACTTCTGTCATCAATCCG+TGG | + | tig0017374:7288-7307 | Msa1361160:CDS | 45.0% | |
| CTTTCAAACAGGCAGCATGA+CGG | - | tig0017374:5716-5735 | None:intergenic | 45.0% | |
| GTGTGACCTTGACCTTTCAT+TGG | + | tig0017374:5738-5757 | Msa1361160:intron | 45.0% | |
| CTTTGGCCAATGAAAGGTCA+AGG | - | tig0017374:5747-5766 | None:intergenic | 45.0% | |
| ACACCAGCTATAACCACCAT+TGG | - | tig0017374:5814-5833 | None:intergenic | 45.0% | |
| AATGGTGGTTATAGCTGGTG+TGG | + | tig0017374:5813-5832 | Msa1361160:CDS | 45.0% | |
| GCAGAAACTGGTATTACCAC+AGG | - | tig0017374:6180-6199 | None:intergenic | 45.0% | |
| AGTCGAGCAGAACATACAAG+GGG | - | tig0017374:6392-6411 | None:intergenic | 45.0% | |
| TAGAGTTGTGGGATGGATAC+TGG | + | tig0017374:6629-6648 | Msa1361160:intron | 45.0% | |
| AGGTAGCATACCCCTGATTA+CGG | + | tig0017374:6701-6720 | Msa1361160:intron | 45.0% | |
| TTGTATCGTGCCGTAATCAG+GGG | - | tig0017374:6714-6733 | None:intergenic | 45.0% | |
| ! | GACCAAAGAAGGTCCACTTT+TGG | + | tig0017374:6880-6899 | Msa1361160:intron | 45.0% |
| ATAGTCACAGTACTTGTGGG+GGG | - | tig0017374:7093-7112 | None:intergenic | 45.0% | |
| CATAGTCACAGTACTTGTGG+GGG | - | tig0017374:7094-7113 | None:intergenic | 45.0% | |
| GCATAGTCACAGTACTTGTG+GGG | - | tig0017374:7095-7114 | None:intergenic | 45.0% | |
| ACTCTTGGTTGCAAGGACTT+TGG | - | tig0017374:7148-7167 | None:intergenic | 45.0% | |
| CAACTTCTGTCATCAATCCG+TGG | + | tig0017374:7288-7307 | Msa1361160:CDS | 45.0% | |
| GCTTCGTCTTCTTCATCCTG+TGG | + | tig0017374:6161-6180 | Msa1361160:CDS | 50.0% | |
| TTCTGCCACATCACGCTTAC+TGG | - | tig0017374:6258-6277 | None:intergenic | 50.0% | |
| ! | GCTGTTGTGCATGTTTTGCC+AGG | - | tig0017374:7053-7072 | None:intergenic | 50.0% |
| TAGTCACAGTACTTGTGGGG+GGG | - | tig0017374:7092-7111 | None:intergenic | 50.0% | |
| GCTTCGTCTTCTTCATCCTG+TGG | + | tig0017374:6161-6180 | Msa1361160:CDS | 50.0% | |
| TTCTGCCACATCACGCTTAC+TGG | - | tig0017374:6258-6277 | None:intergenic | 50.0% | |
| ! | GCTGTTGTGCATGTTTTGCC+AGG | - | tig0017374:7053-7072 | None:intergenic | 50.0% |
| TAGTCACAGTACTTGTGGGG+GGG | - | tig0017374:7092-7111 | None:intergenic | 50.0% | |
| AGTCACAGTACTTGTGGGGG+GGG | - | tig0017374:7091-7110 | None:intergenic | 55.0% | |
| AGTCACAGTACTTGTGGGGG+GGG | - | tig0017374:7091-7110 | None:intergenic | 55.0% | |
| TCACAGTACTTGTGGGGGGG+GGG | - | tig0017374:7089-7108 | None:intergenic | 60.0% | |
| GTCACAGTACTTGTGGGGGG+GGG | - | tig0017374:7090-7109 | None:intergenic | 60.0% | |
| TCACAGTACTTGTGGGGGGG+GGG | - | tig0017374:7089-7108 | None:intergenic | 60.0% | |
| GTCACAGTACTTGTGGGGGG+GGG | - | tig0017374:7090-7109 | None:intergenic | 60.0% | |
| ACAGTACTTGTGGGGGGGGG+GGG | - | tig0017374:7087-7106 | None:intergenic | 65.0% | |
| CACAGTACTTGTGGGGGGGG+GGG | - | tig0017374:7088-7107 | None:intergenic | 65.0% | |
| ACAGTACTTGTGGGGGGGGG+GGG | - | tig0017374:7087-7106 | None:intergenic | 65.0% | |
| CACAGTACTTGTGGGGGGGG+GGG | - | tig0017374:7088-7107 | None:intergenic | 65.0% | |
| AGTACTTGTGGGGGGGGGGG+GGG | - | tig0017374:7085-7104 | None:intergenic | 70.0% | |
| CAGTACTTGTGGGGGGGGGG+GGG | - | tig0017374:7086-7105 | None:intergenic | 70.0% | |
| AGTACTTGTGGGGGGGGGGG+GGG | - | tig0017374:7085-7104 | None:intergenic | 70.0% | |
| CAGTACTTGTGGGGGGGGGG+GGG | - | tig0017374:7086-7105 | None:intergenic | 70.0% | |
| TACTTGTGGGGGGGGGGGGG+GGG | - | tig0017374:7083-7102 | None:intergenic | 75.0% | |
| GTACTTGTGGGGGGGGGGGG+GGG | - | tig0017374:7084-7103 | None:intergenic | 75.0% | |
| TACTTGTGGGGGGGGGGGGG+GGG | - | tig0017374:7083-7102 | None:intergenic | 75.0% | |
| GTACTTGTGGGGGGGGGGGG+GGG | - | tig0017374:7084-7103 | None:intergenic | 75.0% | |
| ! | ACTTGTGGGGGGGGGGGGGG+GGG | - | tig0017374:7082-7101 | None:intergenic | 80.0% |
| ! | ACTTGTGGGGGGGGGGGGGG+GGG | - | tig0017374:7082-7101 | None:intergenic | 80.0% |
| ! | TTGTGGGGGGGGGGGGGGGG+GGG | - | tig0017374:7080-7099 | None:intergenic | 85.0% |
| ! | CTTGTGGGGGGGGGGGGGGG+GGG | - | tig0017374:7081-7100 | None:intergenic | 85.0% |
| ! | TTGTGGGGGGGGGGGGGGGG+GGG | - | tig0017374:7080-7099 | None:intergenic | 85.0% |
| ! | CTTGTGGGGGGGGGGGGGGG+GGG | - | tig0017374:7081-7100 | None:intergenic | 85.0% |
| ! | TGTGGGGGGGGGGGGGGGGG+GGG | - | tig0017374:7079-7098 | None:intergenic | 90.0% |
| ! | TGTGGGGGGGGGGGGGGGGG+GGG | - | tig0017374:7079-7098 | None:intergenic | 90.0% |
| ! | TGGGGGGGGGGGGGGGGGGG+GGG | - | tig0017374:7077-7096 | None:intergenic | 95.0% |
| ! | GTGGGGGGGGGGGGGGGGGG+GGG | - | tig0017374:7078-7097 | None:intergenic | 95.0% |
| ! | TGGGGGGGGGGGGGGGGGGG+GGG | - | tig0017374:7077-7096 | None:intergenic | 95.0% |
| ! | GTGGGGGGGGGGGGGGGGGG+GGG | - | tig0017374:7078-7097 | None:intergenic | 95.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0017374 | gene | 5593 | 7439 | 5593 | ID=Msa1361160;Name=Msa1361160 |
| tig0017374 | mRNA | 5593 | 7439 | 5593 | ID=Msa1361160-mRNA-1;Parent=Msa1361160;Name=Msa1361160-mRNA-1;_AED=0.23;_eAED=0.27;_QI=0|0|0|1|0.25|0.2|5|0|217 |
| tig0017374 | exon | 5593 | 5695 | 5593 | ID=Msa1361160-mRNA-1:exon:12291;Parent=Msa1361160-mRNA-1 |
| tig0017374 | exon | 5767 | 5863 | 5767 | ID=Msa1361160-mRNA-1:exon:12292;Parent=Msa1361160-mRNA-1 |
| tig0017374 | exon | 6046 | 6182 | 6046 | ID=Msa1361160-mRNA-1:exon:12293;Parent=Msa1361160-mRNA-1 |
| tig0017374 | exon | 6996 | 7099 | 6996 | ID=Msa1361160-mRNA-1:exon:12294;Parent=Msa1361160-mRNA-1 |
| tig0017374 | exon | 7227 | 7439 | 7227 | ID=Msa1361160-mRNA-1:exon:12295;Parent=Msa1361160-mRNA-1 |
| tig0017374 | CDS | 5593 | 5695 | 5593 | ID=Msa1361160-mRNA-1:cds;Parent=Msa1361160-mRNA-1 |
| tig0017374 | CDS | 5767 | 5863 | 5767 | ID=Msa1361160-mRNA-1:cds;Parent=Msa1361160-mRNA-1 |
| tig0017374 | CDS | 6046 | 6182 | 6046 | ID=Msa1361160-mRNA-1:cds;Parent=Msa1361160-mRNA-1 |
| tig0017374 | CDS | 6996 | 7099 | 6996 | ID=Msa1361160-mRNA-1:cds;Parent=Msa1361160-mRNA-1 |
| tig0017374 | CDS | 7227 | 7439 | 7227 | ID=Msa1361160-mRNA-1:cds;Parent=Msa1361160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
