Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1361260 | XP_039687320.1 | 96.281 | 242 | 6 | 1 | 1 | 239 | 1 | 242 | 2.16e-170 | 479 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1361260 | sp|Q9FJK3|AGL80_ARATH | 56.164 | 219 | 83 | 3 | 1 | 206 | 1 | 219 | 3.31e-69 | 218 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1361260 | G7J8R0 | 96.281 | 242 | 6 | 1 | 1 | 239 | 1 | 242 | 1.03e-170 | 479 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1361260 | TF | MADS-M-type |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1361260 | MtrunA17_Chr3g0110131 | 96.281 | 242 | 6 | 1 | 1 | 239 | 1 | 242 | 1.99e-174 | 479 |
| Msa1361260 | MtrunA17_Chr3g0107381 | 54.357 | 241 | 83 | 4 | 1 | 234 | 1 | 221 | 5.85e-83 | 246 |
| Msa1361260 | MtrunA17_Chr8g0351751 | 57.143 | 245 | 94 | 6 | 1 | 235 | 1 | 244 | 2.79e-80 | 241 |
| Msa1361260 | MtrunA17_Chr4g0014321 | 50.847 | 236 | 107 | 4 | 1 | 235 | 1 | 228 | 5.79e-77 | 232 |
| Msa1361260 | MtrunA17_Chr4g0014031 | 49.794 | 243 | 97 | 6 | 1 | 235 | 1 | 226 | 2.55e-65 | 202 |
| Msa1361260 | MtrunA17_Chr4g0013041 | 61.039 | 154 | 57 | 2 | 1 | 153 | 1 | 152 | 3.73e-61 | 191 |
| Msa1361260 | MtrunA17_Chr4g0014131 | 50.617 | 243 | 97 | 6 | 1 | 235 | 1 | 228 | 7.53e-60 | 188 |
| Msa1361260 | MtrunA17_Chr3g0107331 | 51.899 | 158 | 76 | 0 | 3 | 160 | 2 | 159 | 4.34e-55 | 174 |
| Msa1361260 | MtrunA17_Chr4g0014121 | 61.290 | 155 | 59 | 1 | 1 | 154 | 29 | 183 | 7.39e-54 | 171 |
| Msa1361260 | MtrunA17_Chr2g0296831 | 68.033 | 122 | 39 | 0 | 1 | 122 | 1 | 122 | 4.94e-52 | 164 |
| Msa1361260 | MtrunA17_Chr3g0107351 | 49.682 | 157 | 79 | 0 | 3 | 159 | 2 | 158 | 7.14e-51 | 163 |
| Msa1361260 | MtrunA17_Chr3g0107341 | 49.682 | 157 | 79 | 0 | 3 | 159 | 2 | 158 | 3.56e-49 | 159 |
| Msa1361260 | MtrunA17_Chr3g0107361 | 49.682 | 157 | 79 | 0 | 3 | 159 | 2 | 158 | 6.07e-49 | 158 |
| Msa1361260 | MtrunA17_Chr3g0107461 | 49.032 | 155 | 78 | 1 | 1 | 154 | 1 | 155 | 1.06e-48 | 157 |
| Msa1361260 | MtrunA17_Chr5g0420351 | 50.000 | 156 | 77 | 1 | 1 | 156 | 1 | 155 | 1.22e-46 | 152 |
| Msa1361260 | MtrunA17_Chr5g0432691 | 42.593 | 162 | 93 | 0 | 1 | 162 | 1 | 162 | 5.22e-46 | 150 |
| Msa1361260 | MtrunA17_Chr2g0283941 | 41.294 | 201 | 106 | 3 | 1 | 197 | 1 | 193 | 2.20e-42 | 144 |
| Msa1361260 | MtrunA17_Chr1g0188681 | 46.497 | 157 | 83 | 1 | 1 | 157 | 1 | 156 | 4.37e-42 | 140 |
| Msa1361260 | MtrunA17_Chr7g0218151 | 50.955 | 157 | 76 | 1 | 1 | 157 | 1 | 156 | 1.78e-41 | 139 |
| Msa1361260 | MtrunA17_Chr1g0197261 | 42.949 | 156 | 88 | 1 | 1 | 156 | 1 | 155 | 6.55e-41 | 137 |
| Msa1361260 | MtrunA17_Chr1g0193311 | 50.000 | 156 | 77 | 1 | 1 | 156 | 1 | 155 | 4.84e-40 | 135 |
| Msa1361260 | MtrunA17_Chr1g0188661 | 50.318 | 157 | 77 | 1 | 1 | 157 | 1 | 156 | 6.57e-40 | 135 |
| Msa1361260 | MtrunA17_Chr4g0031421 | 48.529 | 136 | 69 | 1 | 29 | 163 | 1 | 136 | 7.39e-39 | 132 |
| Msa1361260 | MtrunA17_Chr4g0012761 | 48.408 | 157 | 80 | 1 | 1 | 157 | 1 | 156 | 5.44e-38 | 130 |
| Msa1361260 | MtrunA17_Chr1g0197321 | 40.127 | 157 | 92 | 2 | 1 | 156 | 1 | 156 | 5.81e-37 | 127 |
| Msa1361260 | MtrunA17_Chr1g0197461 | 41.558 | 154 | 89 | 1 | 3 | 156 | 2 | 154 | 8.06e-37 | 127 |
| Msa1361260 | MtrunA17_Chr3g0105791 | 46.923 | 130 | 68 | 1 | 29 | 157 | 1 | 130 | 2.99e-36 | 125 |
| Msa1361260 | MtrunA17_Chr2g0296861 | 43.506 | 154 | 87 | 0 | 1 | 154 | 1 | 154 | 8.12e-36 | 124 |
| Msa1361260 | MtrunA17_Chr1g0188651 | 48.408 | 157 | 78 | 2 | 1 | 157 | 1 | 154 | 9.91e-35 | 121 |
| Msa1361260 | MtrunA17_Chr3g0106421 | 37.748 | 151 | 89 | 2 | 29 | 178 | 1 | 147 | 7.94e-31 | 113 |
| Msa1361260 | MtrunA17_Chr3g0106501 | 38.060 | 134 | 82 | 1 | 29 | 161 | 1 | 134 | 2.66e-27 | 102 |
| Msa1361260 | MtrunA17_Chr6g0457851 | 29.630 | 243 | 133 | 9 | 1 | 233 | 11 | 225 | 2.49e-24 | 99.4 |
| Msa1361260 | MtrunA17_Chr4g0008701 | 38.462 | 117 | 72 | 0 | 3 | 119 | 6 | 122 | 8.47e-24 | 99.4 |
| Msa1361260 | MtrunA17_Chr7g0267601 | 38.525 | 122 | 72 | 1 | 1 | 119 | 1 | 122 | 3.00e-23 | 97.8 |
| Msa1361260 | MtrunA17_Chr1g0212151 | 27.049 | 244 | 140 | 8 | 1 | 234 | 1 | 216 | 2.94e-20 | 87.8 |
| Msa1361260 | MtrunA17_Chr3g0128721 | 27.564 | 156 | 113 | 0 | 3 | 158 | 6 | 161 | 3.84e-20 | 89.0 |
| Msa1361260 | MtrunA17_Chr6g0449861 | 26.749 | 243 | 142 | 9 | 1 | 234 | 9 | 224 | 9.99e-20 | 86.7 |
| Msa1361260 | MtrunA17_Chr2g0296851 | 50.562 | 89 | 43 | 1 | 74 | 161 | 1 | 89 | 1.79e-19 | 80.5 |
| Msa1361260 | MtrunA17_Chr6g0449851 | 26.087 | 184 | 120 | 5 | 1 | 178 | 1 | 174 | 8.78e-16 | 75.1 |
| Msa1361260 | MtrunA17_Chr4g0022641 | 24.623 | 199 | 132 | 5 | 1 | 189 | 1 | 191 | 2.80e-12 | 65.5 |
| Msa1361260 | MtrunA17_Chr4g0059631 | 26.627 | 169 | 113 | 4 | 1 | 166 | 1 | 161 | 1.08e-11 | 62.8 |
| Msa1361260 | MtrunA17_Chr1g0212471 | 26.250 | 160 | 107 | 3 | 1 | 156 | 1 | 153 | 2.17e-11 | 61.2 |
| Msa1361260 | MtrunA17_Chr2g0317481 | 27.615 | 239 | 147 | 10 | 3 | 226 | 10 | 237 | 6.08e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1361260 | AT5G48670.1 | 56.164 | 219 | 83 | 3 | 1 | 206 | 1 | 219 | 3.37e-70 | 218 |
| Msa1361260 | AT1G65300.1 | 43.678 | 174 | 98 | 0 | 3 | 176 | 2 | 175 | 1.20e-50 | 166 |
| Msa1361260 | AT1G65330.1 | 47.222 | 180 | 93 | 1 | 3 | 180 | 2 | 181 | 4.14e-50 | 165 |
| Msa1361260 | AT3G05860.3 | 44.505 | 182 | 96 | 2 | 1 | 177 | 1 | 182 | 4.23e-48 | 159 |
| Msa1361260 | AT3G05860.2 | 51.007 | 149 | 73 | 0 | 1 | 149 | 1 | 149 | 5.09e-48 | 157 |
| Msa1361260 | AT5G26630.1 | 47.120 | 191 | 99 | 2 | 1 | 191 | 1 | 189 | 8.82e-48 | 157 |
| Msa1361260 | AT3G05860.1 | 41.709 | 199 | 111 | 2 | 1 | 194 | 1 | 199 | 1.25e-47 | 158 |
| Msa1361260 | AT5G26650.1 | 44.654 | 159 | 88 | 0 | 4 | 162 | 2 | 160 | 1.49e-43 | 150 |
| Msa1361260 | AT5G27960.1 | 44.025 | 159 | 89 | 0 | 4 | 162 | 2 | 160 | 1.40e-42 | 147 |
| Msa1361260 | AT1G31630.1 | 42.405 | 158 | 90 | 1 | 3 | 160 | 2 | 158 | 1.22e-41 | 145 |
| Msa1361260 | AT5G27810.1 | 66.667 | 93 | 31 | 0 | 29 | 121 | 1 | 93 | 5.44e-40 | 134 |
| Msa1361260 | AT1G31640.1 | 41.875 | 160 | 92 | 1 | 3 | 162 | 2 | 160 | 7.28e-39 | 140 |
| Msa1361260 | AT2G28700.1 | 35.135 | 185 | 111 | 4 | 1 | 179 | 1 | 182 | 6.25e-34 | 124 |
| Msa1361260 | AT5G26580.1 | 39.375 | 160 | 83 | 1 | 1 | 160 | 1 | 146 | 5.22e-32 | 120 |
| Msa1361260 | AT1G22590.2 | 35.714 | 154 | 96 | 1 | 1 | 154 | 1 | 151 | 2.50e-26 | 100 |
| Msa1361260 | AT2G40210.1 | 43.902 | 123 | 69 | 0 | 1 | 123 | 1 | 123 | 6.02e-24 | 99.0 |
| Msa1361260 | AT5G06500.1 | 37.815 | 119 | 74 | 0 | 1 | 119 | 1 | 119 | 1.57e-21 | 90.1 |
| Msa1361260 | AT5G55690.1 | 28.846 | 208 | 112 | 4 | 1 | 187 | 1 | 193 | 5.48e-18 | 81.3 |
| Msa1361260 | AT5G55690.2 | 28.846 | 208 | 112 | 4 | 1 | 187 | 1 | 193 | 5.48e-18 | 81.3 |
| Msa1361260 | AT5G58890.1 | 30.625 | 160 | 96 | 3 | 1 | 154 | 1 | 151 | 1.33e-13 | 69.3 |
| Msa1361260 | AT1G77950.3 | 37.895 | 95 | 58 | 1 | 1 | 95 | 1 | 94 | 4.96e-11 | 61.2 |
| Msa1361260 | AT1G77950.2 | 37.895 | 95 | 58 | 1 | 1 | 95 | 1 | 94 | 4.96e-11 | 61.2 |
| Msa1361260 | AT1G77950.1 | 37.895 | 95 | 58 | 1 | 1 | 95 | 1 | 94 | 4.96e-11 | 61.2 |
| Msa1361260 | AT1G77950.4 | 37.895 | 95 | 58 | 1 | 1 | 95 | 1 | 94 | 4.96e-11 | 61.2 |
| Msa1361260 | AT1G59930.1 | 34.211 | 114 | 64 | 3 | 84 | 192 | 1 | 108 | 5.60e-11 | 58.9 |
| Msa1361260 | AT5G35120.1 | 32.967 | 91 | 61 | 0 | 84 | 174 | 1 | 91 | 6.55e-11 | 58.2 |
Find 55 sgRNAs with CRISPR-Local
Find 67 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTATTATCCTTTCTTTGTT+TGG | 0.241148 | tig0017414:+11872 | None:intergenic |
| TGTCCATTCTCTTCAATCTT+AGG | 0.274749 | tig0017414:+11639 | None:intergenic |
| GATTTGGCCAAAACCCATTT+GGG | 0.290435 | tig0017414:+11493 | None:intergenic |
| TTTATGAACTTGATGAATAA+TGG | 0.322309 | tig0017414:-11555 | Msa1361260:CDS |
| ATGCTTATATTGTGCATAAC+TGG | 0.326699 | tig0017414:+11804 | None:intergenic |
| GAAGAAAGGTCTAATGAAAA+AGG | 0.328619 | tig0017414:-12105 | Msa1361260:CDS |
| CATGGTTGATTTGAATGATA+TGG | 0.333296 | tig0017414:-11784 | Msa1361260:CDS |
| GAGTCATGGTCAACATGTTT+TGG | 0.338044 | tig0017414:-11613 | Msa1361260:CDS |
| GGATTTGGCCAAAACCCATT+TGG | 0.342692 | tig0017414:+11492 | None:intergenic |
| GAGGTTTGGCCGTCTCCTTT+AGG | 0.389676 | tig0017414:-12011 | Msa1361260:CDS |
| TGGGGATCAGGCACCTCCTA+TGG | 0.395072 | tig0017414:-11529 | Msa1361260:CDS |
| GAATAATGGTGGTGGGGATC+AGG | 0.411629 | tig0017414:-11541 | Msa1361260:CDS |
| AATGGTCGTAGCACCAACTA+TGG | 0.416139 | tig0017414:-11676 | Msa1361260:CDS |
| ACCTCTGGTTGAGGATCATA+AGG | 0.423494 | tig0017414:+12029 | None:intergenic |
| ATGATCCTCAACCAGAGGTT+TGG | 0.426927 | tig0017414:-12025 | Msa1361260:CDS |
| AGTATTTGAAAGATATCAAT+AGG | 0.431729 | tig0017414:-11746 | Msa1361260:CDS |
| AAAGGAGACGGCCAAACCTC+TGG | 0.476094 | tig0017414:+12014 | None:intergenic |
| GTCTCCTTTAGGAGTTCAAA+GGG | 0.477655 | tig0017414:-12000 | Msa1361260:CDS |
| CGTCTCCTTTAGGAGTTCAA+AGG | 0.479690 | tig0017414:-12001 | Msa1361260:CDS |
| GGAAGGCAACATTCAAGAAA+AGG | 0.489208 | tig0017414:-12127 | Msa1361260:CDS |
| TCAATTGACCAAACAAAGAA+AGG | 0.490968 | tig0017414:-11880 | Msa1361260:CDS |
| GCACCAACTATGGTGGCTAA+TGG | 0.492096 | tig0017414:-11666 | Msa1361260:CDS |
| TTTGAGGCAGCGGATTCAAA+AGG | 0.492900 | tig0017414:-11910 | Msa1361260:CDS |
| GGAGGGTTGAAATGTTGAGC+AGG | 0.493102 | tig0017414:-11725 | Msa1361260:CDS |
| CTACCTAAGATTGAAGAGAA+TGG | 0.512642 | tig0017414:-11642 | Msa1361260:CDS |
| AGGTCAAGGTCAAACTCAAA+TGG | 0.513312 | tig0017414:-11694 | Msa1361260:CDS |
| AGCACCCTTTGAACTCCTAA+AGG | 0.514637 | tig0017414:+11996 | None:intergenic |
| GTTGAAATGTTGAGCAGGAA+TGG | 0.522645 | tig0017414:-11720 | Msa1361260:CDS |
| GGGGATCAGGCACCTCCTAT+GGG | 0.527561 | tig0017414:-11528 | Msa1361260:CDS |
| AATCAACGACTCTGCGAGGA+AGG | 0.536639 | tig0017414:-12144 | Msa1361260:CDS |
| AGTCCATTAGCCACCATAGT+TGG | 0.539716 | tig0017414:+11663 | None:intergenic |
| TTTGAAAGATATCAATAGGA+GGG | 0.549226 | tig0017414:-11742 | Msa1361260:CDS |
| AACTTGATGAATAATGGTGG+TGG | 0.552012 | tig0017414:-11549 | Msa1361260:CDS |
| AGCAGGAATGGTCAAGGTCA+AGG | 0.553703 | tig0017414:-11708 | Msa1361260:CDS |
| GAGAATGGACAAGGGAGTCA+TGG | 0.556512 | tig0017414:-11627 | Msa1361260:CDS |
| ACATTCAAGAAAAGGAAGAA+AGG | 0.560908 | tig0017414:-12119 | Msa1361260:CDS |
| GACGGCCAAACCTCTGGTTG+AGG | 0.565198 | tig0017414:+12020 | None:intergenic |
| GGATTGACATTTCCCATAGG+AGG | 0.571905 | tig0017414:+11516 | None:intergenic |
| ATTTGGCCAAAACCCATTTG+GGG | 0.587386 | tig0017414:+11494 | None:intergenic |
| TTTGGCCAAAACCCATTTGG+GGG | 0.595235 | tig0017414:+11495 | None:intergenic |
| ATTTGAAAGATATCAATAGG+AGG | 0.602830 | tig0017414:-11743 | Msa1361260:CDS |
| TCCTTATGATCCTCAACCAG+AGG | 0.603338 | tig0017414:-12030 | Msa1361260:CDS |
| GCATAACTGGATCAGCACTA+AGG | 0.605501 | tig0017414:+11817 | None:intergenic |
| AAGATTGAAGAGAATGGACA+AGG | 0.608283 | tig0017414:-11636 | Msa1361260:CDS |
| ACTTGATGAATAATGGTGGT+GGG | 0.616834 | tig0017414:-11548 | Msa1361260:CDS |
| ATGAACTTGATGAATAATGG+TGG | 0.624781 | tig0017414:-11552 | Msa1361260:CDS |
| AGTGAACTCAGTACTCTATG+TGG | 0.630043 | tig0017414:-12080 | Msa1361260:CDS |
| CTTGATGAATAATGGTGGTG+GGG | 0.636670 | tig0017414:-11547 | Msa1361260:CDS |
| CTTTGAACTCCTAAAGGAGA+CGG | 0.641014 | tig0017414:+12002 | None:intergenic |
| AGTTATGCACAATATAAGCA+TGG | 0.643634 | tig0017414:-11802 | Msa1361260:CDS |
| TTGATTTGAATGATATGGCA+TGG | 0.644556 | tig0017414:-11779 | Msa1361260:CDS |
| ATGTTGAGCAGGAATGGTCA+AGG | 0.649347 | tig0017414:-11714 | Msa1361260:CDS |
| GGTCGTAGCACCAACTATGG+TGG | 0.652064 | tig0017414:-11673 | Msa1361260:CDS |
| TCATAATCAACGACTCTGCG+AGG | 0.671801 | tig0017414:-12148 | Msa1361260:CDS |
| AGATTGAAGAGAATGGACAA+GGG | 0.691703 | tig0017414:-11635 | Msa1361260:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTATTTGAAAGATATCAAT+AGG | - | tig0017414:11909-11928 | Msa1361260:CDS | 20.0% |
| !! | TTTATGAACTTGATGAATAA+TGG | - | tig0017414:12100-12119 | Msa1361260:CDS | 20.0% |
| ! | TCTATTATCCTTTCTTTGTT+TGG | + | tig0017414:11786-11805 | None:intergenic | 25.0% |
| ! | ATTTGAAAGATATCAATAGG+AGG | - | tig0017414:11912-11931 | Msa1361260:CDS | 25.0% |
| ! | TTTGAAAGATATCAATAGGA+GGG | - | tig0017414:11913-11932 | Msa1361260:CDS | 25.0% |
| ACATTCAAGAAAAGGAAGAA+AGG | - | tig0017414:11536-11555 | Msa1361260:CDS | 30.0% | |
| GAAGAAAGGTCTAATGAAAA+AGG | - | tig0017414:11550-11569 | Msa1361260:CDS | 30.0% | |
| !! | TTTTTGCTTTGTTCCAATTC+AGG | + | tig0017414:11704-11723 | None:intergenic | 30.0% |
| ATTGGAACAAAGCAAAAAGA+TGG | - | tig0017414:11706-11725 | Msa1361260:CDS | 30.0% | |
| TCAATTGACCAAACAAAGAA+AGG | - | tig0017414:11775-11794 | Msa1361260:CDS | 30.0% | |
| ATGCTTATATTGTGCATAAC+TGG | + | tig0017414:11854-11873 | None:intergenic | 30.0% | |
| AGTTATGCACAATATAAGCA+TGG | - | tig0017414:11853-11872 | Msa1361260:CDS | 30.0% | |
| !! | CATGGTTGATTTGAATGATA+TGG | - | tig0017414:11871-11890 | Msa1361260:CDS | 30.0% |
| ! | TTGATTTGAATGATATGGCA+TGG | - | tig0017414:11876-11895 | Msa1361260:CDS | 30.0% |
| ATGAACTTGATGAATAATGG+TGG | - | tig0017414:12103-12122 | Msa1361260:CDS | 30.0% | |
| ! | GTTCCAATTCAGGCATTTTT+CGG | + | tig0017414:11694-11713 | None:intergenic | 35.0% |
| !!! | TGAACCAAGAGAGTTTTTTG+AGG | - | tig0017414:11729-11748 | Msa1361260:CDS | 35.0% |
| CTACCTAAGATTGAAGAGAA+TGG | - | tig0017414:12013-12032 | Msa1361260:CDS | 35.0% | |
| TGTCCATTCTCTTCAATCTT+AGG | + | tig0017414:12019-12038 | None:intergenic | 35.0% | |
| AAGATTGAAGAGAATGGACA+AGG | - | tig0017414:12019-12038 | Msa1361260:CDS | 35.0% | |
| AGATTGAAGAGAATGGACAA+GGG | - | tig0017414:12020-12039 | Msa1361260:CDS | 35.0% | |
| !! | ACATGTTTTGGACATGAACA+TGG | - | tig0017414:12054-12073 | Msa1361260:CDS | 35.0% |
| AACTTGATGAATAATGGTGG+TGG | - | tig0017414:12106-12125 | Msa1361260:CDS | 35.0% | |
| ACTTGATGAATAATGGTGGT+GGG | - | tig0017414:12107-12126 | Msa1361260:CDS | 35.0% | |
| GGAAGGCAACATTCAAGAAA+AGG | - | tig0017414:11528-11547 | Msa1361260:CDS | 40.0% | |
| AGTGAACTCAGTACTCTATG+TGG | - | tig0017414:11575-11594 | Msa1361260:CDS | 40.0% | |
| CTTTGAACTCCTAAAGGAGA+CGG | + | tig0017414:11656-11675 | None:intergenic | 40.0% | |
| ! | GTCTCCTTTAGGAGTTCAAA+GGG | - | tig0017414:11655-11674 | Msa1361260:CDS | 40.0% |
| GTTCCGAAAAATGCCTGAAT+TGG | - | tig0017414:11688-11707 | Msa1361260:CDS | 40.0% | |
| !!! | AAGAGAGTTTTTTGAGGCAG+CGG | - | tig0017414:11735-11754 | Msa1361260:CDS | 40.0% |
| GTTGAAATGTTGAGCAGGAA+TGG | - | tig0017414:11935-11954 | Msa1361260:CDS | 40.0% | |
| AGGTCAAGGTCAAACTCAAA+TGG | - | tig0017414:11961-11980 | Msa1361260:CDS | 40.0% | |
| ! | GAGTCATGGTCAACATGTTT+TGG | - | tig0017414:12042-12061 | Msa1361260:CDS | 40.0% |
| ! | CTTGATGAATAATGGTGGTG+GGG | - | tig0017414:12108-12127 | Msa1361260:CDS | 40.0% |
| GAAATGTCAATCCCCCAAAT+GGG | - | tig0017414:12149-12168 | Msa1361260:CDS | 40.0% | |
| ATTTGGCCAAAACCCATTTG+GGG | + | tig0017414:12164-12183 | None:intergenic | 40.0% | |
| GATTTGGCCAAAACCCATTT+GGG | + | tig0017414:12165-12184 | None:intergenic | 40.0% | |
| TCATAATCAACGACTCTGCG+AGG | - | tig0017414:11507-11526 | Msa1361260:CDS | 45.0% | |
| TCCTTATGATCCTCAACCAG+AGG | - | tig0017414:11625-11644 | Msa1361260:CDS | 45.0% | |
| ACCTCTGGTTGAGGATCATA+AGG | + | tig0017414:11629-11648 | None:intergenic | 45.0% | |
| ATGATCCTCAACCAGAGGTT+TGG | - | tig0017414:11630-11649 | Msa1361260:CDS | 45.0% | |
| ! | CGTCTCCTTTAGGAGTTCAA+AGG | - | tig0017414:11654-11673 | Msa1361260:CDS | 45.0% |
| AGCACCCTTTGAACTCCTAA+AGG | + | tig0017414:11662-11681 | None:intergenic | 45.0% | |
| GCTGCCTCAAAAAACTCTCT+TGG | + | tig0017414:11736-11755 | None:intergenic | 45.0% | |
| ! | TTTGAGGCAGCGGATTCAAA+AGG | - | tig0017414:11745-11764 | Msa1361260:CDS | 45.0% |
| GCATAACTGGATCAGCACTA+AGG | + | tig0017414:11841-11860 | None:intergenic | 45.0% | |
| ATGTTGAGCAGGAATGGTCA+AGG | - | tig0017414:11941-11960 | Msa1361260:CDS | 45.0% | |
| AATGGTCGTAGCACCAACTA+TGG | - | tig0017414:11979-11998 | Msa1361260:CDS | 45.0% | |
| AGTCCATTAGCCACCATAGT+TGG | + | tig0017414:11995-12014 | None:intergenic | 45.0% | |
| GGATTGACATTTCCCATAGG+AGG | + | tig0017414:12142-12161 | None:intergenic | 45.0% | |
| GGAAATGTCAATCCCCCAAA+TGG | - | tig0017414:12148-12167 | Msa1361260:CDS | 45.0% | |
| !! | TCAATCCCCCAAATGGGTTT+TGG | - | tig0017414:12155-12174 | Msa1361260:CDS | 45.0% |
| TTTGGCCAAAACCCATTTGG+GGG | + | tig0017414:12163-12182 | None:intergenic | 45.0% | |
| GGATTTGGCCAAAACCCATT+TGG | + | tig0017414:12166-12185 | None:intergenic | 45.0% | |
| AATCAACGACTCTGCGAGGA+AGG | - | tig0017414:11511-11530 | Msa1361260:CDS | 50.0% | |
| GGAGGGTTGAAATGTTGAGC+AGG | - | tig0017414:11930-11949 | Msa1361260:CDS | 50.0% | |
| AGCAGGAATGGTCAAGGTCA+AGG | - | tig0017414:11947-11966 | Msa1361260:CDS | 50.0% | |
| GCACCAACTATGGTGGCTAA+TGG | - | tig0017414:11989-12008 | Msa1361260:CDS | 50.0% | |
| GAGAATGGACAAGGGAGTCA+TGG | - | tig0017414:12028-12047 | Msa1361260:CDS | 50.0% | |
| !! | GAATAATGGTGGTGGGGATC+AGG | - | tig0017414:12114-12133 | Msa1361260:CDS | 50.0% |
| GGGGGATTGACATTTCCCAT+AGG | + | tig0017414:12145-12164 | None:intergenic | 50.0% | |
| AAAGGAGACGGCCAAACCTC+TGG | + | tig0017414:11644-11663 | None:intergenic | 55.0% | |
| GAGGTTTGGCCGTCTCCTTT+AGG | - | tig0017414:11644-11663 | Msa1361260:CDS | 55.0% | |
| GGTCGTAGCACCAACTATGG+TGG | - | tig0017414:11982-12001 | Msa1361260:CDS | 55.0% | |
| GACGGCCAAACCTCTGGTTG+AGG | + | tig0017414:11638-11657 | None:intergenic | 60.0% | |
| TGGGGATCAGGCACCTCCTA+TGG | - | tig0017414:12126-12145 | Msa1361260:CDS | 60.0% | |
| GGGGATCAGGCACCTCCTAT+GGG | - | tig0017414:12127-12146 | Msa1361260:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0017414 | gene | 11479 | 12198 | 11479 | ID=Msa1361260;Name=Msa1361260 |
| tig0017414 | mRNA | 11479 | 12198 | 11479 | ID=Msa1361260-mRNA-1;Parent=Msa1361260;Name=Msa1361260-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|-1|0|1|-1|1|1|0|239 |
| tig0017414 | exon | 11479 | 12198 | 11479 | ID=Msa1361260-mRNA-1:exon:12345;Parent=Msa1361260-mRNA-1 |
| tig0017414 | CDS | 11479 | 12198 | 11479 | ID=Msa1361260-mRNA-1:cds;Parent=Msa1361260-mRNA-1 |
| Gene Sequence |
| Protein sequence |
