Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1362930 | XP_004505405.1 | 79.747 | 237 | 36 | 2 | 1 | 228 | 1 | 234 | 6.57e-124 | 360 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1362930 | sp|Q9FJK3|AGL80_ARATH | 69.872 | 156 | 47 | 0 | 1 | 156 | 1 | 156 | 1.89e-68 | 216 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1362930 | A0A1S2YJE0 | 79.747 | 237 | 36 | 2 | 1 | 228 | 1 | 234 | 3.14e-124 | 360 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1362930 | TF | MADS-M-type |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1362930 | MtrunA17_Chr3g0110131 | 76.446 | 242 | 39 | 4 | 1 | 226 | 1 | 240 | 1.59e-115 | 330 |
| Msa1362930 | MtrunA17_Chr8g0351751 | 56.504 | 246 | 83 | 7 | 1 | 224 | 1 | 244 | 1.94e-82 | 246 |
| Msa1362930 | MtrunA17_Chr3g0107381 | 54.274 | 234 | 83 | 6 | 1 | 223 | 1 | 221 | 4.00e-80 | 239 |
| Msa1362930 | MtrunA17_Chr4g0014321 | 51.082 | 231 | 103 | 5 | 1 | 224 | 1 | 228 | 9.82e-72 | 218 |
| Msa1362930 | MtrunA17_Chr4g0014031 | 48.718 | 234 | 102 | 5 | 1 | 224 | 1 | 226 | 2.31e-63 | 197 |
| Msa1362930 | MtrunA17_Chr4g0013041 | 61.688 | 154 | 56 | 2 | 1 | 153 | 1 | 152 | 1.42e-62 | 194 |
| Msa1362930 | MtrunA17_Chr4g0014131 | 48.739 | 238 | 98 | 5 | 1 | 224 | 1 | 228 | 1.60e-61 | 192 |
| Msa1362930 | MtrunA17_Chr3g0107331 | 54.545 | 154 | 70 | 0 | 3 | 156 | 2 | 155 | 1.91e-55 | 174 |
| Msa1362930 | MtrunA17_Chr4g0014121 | 60.645 | 155 | 60 | 1 | 1 | 154 | 29 | 183 | 4.01e-54 | 172 |
| Msa1362930 | MtrunA17_Chr2g0296831 | 68.033 | 122 | 39 | 0 | 1 | 122 | 1 | 122 | 1.13e-52 | 166 |
| Msa1362930 | MtrunA17_Chr5g0420351 | 51.923 | 156 | 74 | 1 | 1 | 156 | 1 | 155 | 8.15e-51 | 162 |
| Msa1362930 | MtrunA17_Chr3g0107461 | 51.592 | 157 | 69 | 2 | 1 | 153 | 1 | 154 | 5.08e-50 | 160 |
| Msa1362930 | MtrunA17_Chr3g0107351 | 50.649 | 154 | 76 | 0 | 3 | 156 | 2 | 155 | 6.82e-50 | 160 |
| Msa1362930 | MtrunA17_Chr3g0107341 | 50.649 | 154 | 76 | 0 | 3 | 156 | 2 | 155 | 3.84e-48 | 155 |
| Msa1362930 | MtrunA17_Chr3g0107361 | 50.649 | 154 | 76 | 0 | 3 | 156 | 2 | 155 | 4.23e-48 | 155 |
| Msa1362930 | MtrunA17_Chr5g0432691 | 43.827 | 162 | 91 | 0 | 1 | 162 | 1 | 162 | 5.03e-47 | 153 |
| Msa1362930 | MtrunA17_Chr2g0283941 | 45.679 | 162 | 87 | 1 | 1 | 161 | 1 | 162 | 2.12e-43 | 146 |
| Msa1362930 | MtrunA17_Chr1g0188681 | 47.771 | 157 | 81 | 1 | 1 | 157 | 1 | 156 | 3.55e-43 | 143 |
| Msa1362930 | MtrunA17_Chr7g0218151 | 52.229 | 157 | 74 | 1 | 1 | 157 | 1 | 156 | 9.37e-43 | 142 |
| Msa1362930 | MtrunA17_Chr1g0193311 | 51.923 | 156 | 74 | 1 | 1 | 156 | 1 | 155 | 2.70e-42 | 140 |
| Msa1362930 | MtrunA17_Chr4g0012761 | 50.318 | 157 | 77 | 1 | 1 | 157 | 1 | 156 | 1.24e-40 | 136 |
| Msa1362930 | MtrunA17_Chr1g0197461 | 42.857 | 154 | 87 | 1 | 3 | 156 | 2 | 154 | 1.82e-40 | 136 |
| Msa1362930 | MtrunA17_Chr1g0197261 | 42.308 | 156 | 89 | 1 | 1 | 156 | 1 | 155 | 5.87e-40 | 134 |
| Msa1362930 | MtrunA17_Chr4g0031421 | 48.905 | 137 | 69 | 1 | 29 | 164 | 1 | 137 | 7.88e-40 | 134 |
| Msa1362930 | MtrunA17_Chr1g0188661 | 48.408 | 157 | 80 | 1 | 1 | 157 | 1 | 156 | 7.72e-39 | 132 |
| Msa1362930 | MtrunA17_Chr2g0296861 | 45.455 | 154 | 84 | 0 | 1 | 154 | 1 | 154 | 4.97e-38 | 130 |
| Msa1362930 | MtrunA17_Chr3g0105791 | 46.715 | 137 | 72 | 1 | 29 | 164 | 1 | 137 | 1.39e-37 | 128 |
| Msa1362930 | MtrunA17_Chr1g0197321 | 39.490 | 157 | 93 | 2 | 1 | 156 | 1 | 156 | 8.50e-36 | 124 |
| Msa1362930 | MtrunA17_Chr1g0188651 | 48.408 | 157 | 78 | 2 | 1 | 157 | 1 | 154 | 4.67e-35 | 122 |
| Msa1362930 | MtrunA17_Chr3g0106421 | 40.876 | 137 | 80 | 1 | 29 | 164 | 1 | 137 | 3.68e-32 | 116 |
| Msa1362930 | MtrunA17_Chr3g0106501 | 37.037 | 135 | 82 | 2 | 29 | 161 | 1 | 134 | 4.95e-24 | 93.6 |
| Msa1362930 | MtrunA17_Chr4g0008701 | 37.594 | 133 | 80 | 1 | 1 | 130 | 1 | 133 | 1.02e-23 | 98.6 |
| Msa1362930 | MtrunA17_Chr7g0267601 | 36.090 | 133 | 82 | 1 | 1 | 130 | 1 | 133 | 1.07e-22 | 95.9 |
| Msa1362930 | MtrunA17_Chr3g0128721 | 28.655 | 171 | 120 | 1 | 3 | 171 | 6 | 176 | 1.36e-21 | 92.8 |
| Msa1362930 | MtrunA17_Chr6g0457851 | 30.180 | 222 | 137 | 8 | 1 | 213 | 11 | 223 | 4.79e-21 | 90.1 |
| Msa1362930 | MtrunA17_Chr6g0449861 | 28.390 | 236 | 136 | 9 | 1 | 223 | 9 | 224 | 8.22e-20 | 86.7 |
| Msa1362930 | MtrunA17_Chr1g0212151 | 36.283 | 113 | 65 | 3 | 1 | 107 | 1 | 112 | 1.50e-18 | 82.8 |
| Msa1362930 | MtrunA17_Chr2g0296851 | 54.878 | 82 | 36 | 1 | 74 | 154 | 1 | 82 | 2.58e-18 | 77.0 |
| Msa1362930 | MtrunA17_Chr6g0449851 | 25.751 | 233 | 137 | 9 | 1 | 223 | 1 | 207 | 8.75e-16 | 74.7 |
| Msa1362930 | MtrunA17_Chr4g0022641 | 31.159 | 138 | 91 | 3 | 1 | 134 | 1 | 138 | 3.02e-13 | 68.2 |
| Msa1362930 | MtrunA17_Chr4g0059631 | 29.496 | 139 | 92 | 4 | 1 | 134 | 1 | 138 | 3.09e-12 | 64.3 |
| Msa1362930 | MtrunA17_Chr1g0162261 | 38.158 | 76 | 46 | 1 | 84 | 158 | 41 | 116 | 1.81e-11 | 59.7 |
| Msa1362930 | MtrunA17_Chr2g0317481 | 27.542 | 236 | 123 | 11 | 3 | 205 | 10 | 230 | 2.30e-11 | 61.6 |
| Msa1362930 | MtrunA17_Chr1g0212471 | 24.859 | 177 | 119 | 5 | 1 | 171 | 1 | 169 | 7.70e-11 | 59.3 |
| Msa1362930 | MtrunA17_Chr1g0149391 | 34.167 | 120 | 70 | 4 | 3 | 116 | 10 | 126 | 7.86e-11 | 60.1 |
| Msa1362930 | MtrunA17_Chr2g0317451 | 27.542 | 236 | 123 | 11 | 3 | 205 | 10 | 230 | 7.94e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1362930 | AT5G48670.1 | 69.872 | 156 | 47 | 0 | 1 | 156 | 1 | 156 | 1.92e-69 | 216 |
| Msa1362930 | AT1G65300.1 | 45.143 | 175 | 95 | 1 | 3 | 177 | 2 | 175 | 3.59e-51 | 167 |
| Msa1362930 | AT1G65330.1 | 46.703 | 182 | 92 | 1 | 3 | 184 | 2 | 178 | 7.10e-50 | 164 |
| Msa1362930 | AT3G05860.2 | 53.020 | 149 | 70 | 0 | 1 | 149 | 1 | 149 | 3.46e-49 | 160 |
| Msa1362930 | AT3G05860.3 | 53.020 | 149 | 70 | 0 | 1 | 149 | 1 | 149 | 1.68e-48 | 160 |
| Msa1362930 | AT3G05860.1 | 53.020 | 149 | 70 | 0 | 1 | 149 | 1 | 149 | 2.09e-48 | 160 |
| Msa1362930 | AT5G26630.1 | 45.604 | 182 | 99 | 0 | 1 | 182 | 1 | 182 | 4.14e-47 | 155 |
| Msa1362930 | AT5G26650.1 | 43.094 | 181 | 102 | 1 | 4 | 184 | 2 | 181 | 2.89e-46 | 157 |
| Msa1362930 | AT5G27960.1 | 42.541 | 181 | 103 | 1 | 4 | 184 | 2 | 181 | 3.05e-45 | 153 |
| Msa1362930 | AT1G31630.1 | 40.805 | 174 | 99 | 4 | 3 | 175 | 2 | 172 | 1.22e-42 | 147 |
| Msa1362930 | AT1G31640.1 | 38.710 | 186 | 105 | 2 | 3 | 180 | 2 | 186 | 8.04e-42 | 148 |
| Msa1362930 | AT5G27810.1 | 67.742 | 93 | 30 | 0 | 29 | 121 | 1 | 93 | 1.22e-41 | 138 |
| Msa1362930 | AT5G26580.1 | 39.130 | 184 | 96 | 2 | 1 | 184 | 1 | 168 | 2.26e-35 | 128 |
| Msa1362930 | AT2G28700.1 | 34.031 | 191 | 115 | 3 | 1 | 182 | 1 | 189 | 1.25e-34 | 126 |
| Msa1362930 | AT1G22590.2 | 38.462 | 156 | 87 | 2 | 1 | 153 | 1 | 150 | 1.23e-28 | 106 |
| Msa1362930 | AT2G40210.1 | 37.356 | 174 | 97 | 3 | 1 | 171 | 1 | 165 | 1.84e-24 | 99.8 |
| Msa1362930 | AT5G06500.1 | 35.938 | 128 | 82 | 0 | 1 | 128 | 1 | 128 | 1.76e-21 | 89.7 |
| Msa1362930 | AT5G55690.1 | 31.447 | 159 | 87 | 3 | 1 | 152 | 1 | 144 | 4.49e-16 | 75.5 |
| Msa1362930 | AT5G55690.2 | 31.447 | 159 | 87 | 3 | 1 | 152 | 1 | 144 | 4.49e-16 | 75.5 |
| Msa1362930 | AT5G58890.1 | 28.862 | 246 | 120 | 13 | 1 | 194 | 1 | 243 | 2.51e-14 | 70.9 |
| Msa1362930 | AT2G15660.1 | 24.427 | 131 | 98 | 1 | 38 | 168 | 31 | 160 | 3.95e-13 | 67.0 |
| Msa1362930 | AT1G77950.3 | 38.947 | 95 | 57 | 1 | 1 | 95 | 1 | 94 | 3.82e-12 | 64.3 |
| Msa1362930 | AT1G77950.2 | 38.947 | 95 | 57 | 1 | 1 | 95 | 1 | 94 | 3.82e-12 | 64.3 |
| Msa1362930 | AT1G77950.1 | 38.947 | 95 | 57 | 1 | 1 | 95 | 1 | 94 | 3.82e-12 | 64.3 |
| Msa1362930 | AT1G77950.4 | 38.947 | 95 | 57 | 1 | 1 | 95 | 1 | 94 | 3.82e-12 | 64.3 |
| Msa1362930 | AT5G35120.1 | 34.545 | 110 | 63 | 3 | 84 | 188 | 1 | 106 | 7.26e-12 | 60.5 |
| Msa1362930 | AT1G59930.1 | 33.636 | 110 | 64 | 3 | 84 | 188 | 1 | 106 | 3.70e-11 | 59.3 |
Find 59 sgRNAs with CRISPR-Local
Find 57 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAATTGCTCTTTCGCCTTT+TGG | 0.163712 | tig0018019:+46135 | None:intergenic |
| AACACTTCTCAATGGGAAAA+TGG | 0.166654 | tig0018019:+45744 | None:intergenic |
| AATTTGACCTTGAGATTTCT+TGG | 0.216746 | tig0018019:+45947 | None:intergenic |
| TATGGTTGATTTAAATGATA+TGG | 0.252561 | tig0018019:-46024 | Msa1362930:CDS |
| GGAGATGTTTGTCAACAAAA+TGG | 0.262030 | tig0018019:-45780 | Msa1362930:CDS |
| TTTGTCAACAAAATGGATTT+TGG | 0.274730 | tig0018019:-45773 | Msa1362930:CDS |
| TTGATGGGTGGTGGTGGTGG+TGG | 0.292498 | tig0018019:-45822 | Msa1362930:CDS |
| CCACCAATGGTGACTAATAT+TGG | 0.300159 | tig0018019:-45912 | Msa1362930:CDS |
| TTGAGAATCTTCTTCAATCT+TGG | 0.324822 | tig0018019:+45884 | None:intergenic |
| GAAGAAAGGTCTAATGAAAA+AGG | 0.328619 | tig0018019:-46345 | Msa1362930:CDS |
| TCTTAGTGCAGGTAAACTTA+TGG | 0.346187 | tig0018019:-46057 | Msa1362930:CDS |
| AGAGGTTTGGCCATCTCAAT+TGG | 0.352415 | tig0018019:-46252 | Msa1362930:CDS |
| ATGAATTTGATGGGTGGTGG+TGG | 0.376740 | tig0018019:-45828 | Msa1362930:CDS |
| AATTTGATGGGTGGTGGTGG+TGG | 0.379151 | tig0018019:-45825 | Msa1362930:CDS |
| TGGGAATGACAAAACTCCTT+TGG | 0.398503 | tig0018019:-45802 | Msa1362930:CDS |
| ACTTGAAAGAGATTAATAGA+AGG | 0.404437 | tig0018019:-45983 | Msa1362930:CDS |
| TCATAACCAACGACTCTTCA+AGG | 0.405543 | tig0018019:-46388 | Msa1362930:CDS |
| ACTTATGGACAATATAAGTA+TGG | 0.408397 | tig0018019:-46042 | Msa1362930:CDS |
| TGAACTTGTTAAGCACCCTT+TGG | 0.411364 | tig0018019:+46225 | None:intergenic |
| ACACTTCTCAATGGGAAAAT+GGG | 0.417391 | tig0018019:+45745 | None:intergenic |
| ATGATCCTCAACCAGAGGTT+TGG | 0.418715 | tig0018019:-46265 | Msa1362930:CDS |
| TCTCAATGGGAAAATGGGTT+TGG | 0.422322 | tig0018019:+45750 | None:intergenic |
| ACCTCTGGTTGAGGATCATA+AGG | 0.423494 | tig0018019:+46269 | None:intergenic |
| GGGAATGACAAAACTCCTTT+GGG | 0.430551 | tig0018019:-45801 | Msa1362930:CDS |
| AAGAAAAGATAATAGAGAAA+AGG | 0.454421 | tig0018019:-46105 | Msa1362930:CDS |
| CAAGCACAACACTTCTCAAT+GGG | 0.463195 | tig0018019:+45737 | None:intergenic |
| TTTATGAATTTGATGGGTGG+TGG | 0.465768 | tig0018019:-45831 | Msa1362930:CDS |
| ACATTTGTTTATGAATTTGA+TGG | 0.467105 | tig0018019:-45838 | Msa1362930:CDS |
| CTTGAAAGAGATTAATAGAA+GGG | 0.469560 | tig0018019:-45982 | Msa1362930:CDS |
| GGAAGGCAACATTCAAGAAA+AGG | 0.471814 | tig0018019:-46367 | Msa1362930:CDS |
| TTTCACCTTCTTTCTAGTCA+TGG | 0.477262 | tig0018019:+46418 | None:intergenic |
| AATTGAGATGGCCAAACCTC+TGG | 0.478913 | tig0018019:+46254 | None:intergenic |
| ATCTCAAGGTCAAATTCAAA+TGG | 0.486453 | tig0018019:-45940 | Msa1362930:CDS |
| TCTAAGACAAAGAATCCAAA+AGG | 0.491661 | tig0018019:-46150 | Msa1362930:CDS |
| GAGGTTTGGCCATCTCAATT+GGG | 0.496817 | tig0018019:-46251 | Msa1362930:CDS |
| AGTGAACTTAGCACCCTTTG+TGG | 0.500307 | tig0018019:-46320 | Msa1362930:CDS |
| ATCTCAATTGGGAGTCCAAA+GGG | 0.510300 | tig0018019:-46240 | Msa1362930:CDS |
| ATGTTTCAATGTCTTAGTGC+AGG | 0.513453 | tig0018019:-46068 | Msa1362930:CDS |
| ACAAGCATCAATTCCACAAA+GGG | 0.520783 | tig0018019:+46307 | None:intergenic |
| TGCCTTCCTTGAAGAGTCGT+TGG | 0.530855 | tig0018019:+46382 | None:intergenic |
| CATTTGTTTATGAATTTGAT+GGG | 0.537456 | tig0018019:-45837 | Msa1362930:CDS |
| CATCTCAATTGGGAGTCCAA+AGG | 0.551709 | tig0018019:-46241 | Msa1362930:CDS |
| CTTTGGACTCCCAATTGAGA+TGG | 0.556461 | tig0018019:+46242 | None:intergenic |
| TCAAATGGCACCACCACCAA+TGG | 0.556616 | tig0018019:-45925 | Msa1362930:CDS |
| ACATTCAAGAAAAGGAAGAA+AGG | 0.560908 | tig0018019:-46359 | Msa1362930:CDS |
| ATATTAGTCACCATTGGTGG+TGG | 0.561778 | tig0018019:+45915 | None:intergenic |
| CCAATATTAGTCACCATTGG+TGG | 0.566294 | tig0018019:+45912 | None:intergenic |
| AAGATTGAAGAAGATTCTCA+AGG | 0.572220 | tig0018019:-45882 | Msa1362930:CDS |
| CCACACCATGACTAGAAAGA+AGG | 0.577852 | tig0018019:-46423 | None:intergenic |
| ACTCCAATATTAGTCACCAT+TGG | 0.580691 | tig0018019:+45909 | None:intergenic |
| GATGGCCAAACCTCTGGTTG+AGG | 0.583372 | tig0018019:+46260 | None:intergenic |
| TCCTTATGATCCTCAACCAG+AGG | 0.603338 | tig0018019:-46270 | Msa1362930:CDS |
| AACCAACGACTCTTCAAGGA+AGG | 0.608854 | tig0018019:-46384 | Msa1362930:CDS |
| TGTTGACAAACATCTCCCAA+AGG | 0.617936 | tig0018019:+45786 | None:intergenic |
| ATGTTGACCAAGAAATCTCA+AGG | 0.620305 | tig0018019:-45954 | Msa1362930:CDS |
| AGATTGAAGAAGATTCTCAA+GGG | 0.621484 | tig0018019:-45881 | Msa1362930:CDS |
| TTGATTTAAATGATATGGCA+TGG | 0.624099 | tig0018019:-46019 | Msa1362930:CDS |
| CACAAGCATCAATTCCACAA+AGG | 0.628500 | tig0018019:+46306 | None:intergenic |
| TTGTTTATGAATTTGATGGG+TGG | 0.633840 | tig0018019:-45834 | Msa1362930:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGAAAAGATAATAGAGAAA+AGG | - | tig0018019:46063-46082 | Msa1362930:CDS | 20.0% |
| !!! | TATGGTTGATTTAAATGATA+TGG | - | tig0018019:46144-46163 | Msa1362930:CDS | 20.0% |
| !! | ACATTTGTTTATGAATTTGA+TGG | - | tig0018019:46330-46349 | Msa1362930:CDS | 20.0% |
| !! | CATTTGTTTATGAATTTGAT+GGG | - | tig0018019:46331-46350 | Msa1362930:CDS | 20.0% |
| ! | ACTTATGGACAATATAAGTA+TGG | - | tig0018019:46126-46145 | Msa1362930:CDS | 25.0% |
| ! | TTGATTTAAATGATATGGCA+TGG | - | tig0018019:46149-46168 | Msa1362930:CDS | 25.0% |
| ! | ACTTGAAAGAGATTAATAGA+AGG | - | tig0018019:46185-46204 | Msa1362930:CDS | 25.0% |
| ! | CTTGAAAGAGATTAATAGAA+GGG | - | tig0018019:46186-46205 | Msa1362930:CDS | 25.0% |
| !!! | TTTGTCAACAAAATGGATTT+TGG | - | tig0018019:46395-46414 | Msa1362930:CDS | 25.0% |
| ACATTCAAGAAAAGGAAGAA+AGG | - | tig0018019:45809-45828 | Msa1362930:CDS | 30.0% | |
| GAAGAAAGGTCTAATGAAAA+AGG | - | tig0018019:45823-45842 | Msa1362930:CDS | 30.0% | |
| !! | TTTTTGCTTTGTTCCAATTC+AGG | + | tig0018019:45977-45996 | None:intergenic | 30.0% |
| ATTGGAACAAAGCAAAAAGA+TGG | - | tig0018019:45979-45998 | Msa1362930:CDS | 30.0% | |
| ! | TCTAAGACAAAGAATCCAAA+AGG | - | tig0018019:46018-46037 | Msa1362930:CDS | 30.0% |
| AATTTGACCTTGAGATTTCT+TGG | + | tig0018019:46224-46243 | None:intergenic | 30.0% | |
| ATCTCAAGGTCAAATTCAAA+TGG | - | tig0018019:46228-46247 | Msa1362930:CDS | 30.0% | |
| TTGAGAATCTTCTTCAATCT+TGG | + | tig0018019:46287-46306 | None:intergenic | 30.0% | |
| AAGATTGAAGAAGATTCTCA+AGG | - | tig0018019:46286-46305 | Msa1362930:CDS | 30.0% | |
| AGATTGAAGAAGATTCTCAA+GGG | - | tig0018019:46287-46306 | Msa1362930:CDS | 30.0% | |
| TTGTTTATGAATTTGATGGG+TGG | - | tig0018019:46334-46353 | Msa1362930:CDS | 30.0% | |
| ACAAGCATCAATTCCACAAA+GGG | + | tig0018019:45864-45883 | None:intergenic | 35.0% | |
| GTTCAGAAAAATGCCTGAAT+TGG | - | tig0018019:45961-45980 | Msa1362930:CDS | 35.0% | |
| ATGTTTCAATGTCTTAGTGC+AGG | - | tig0018019:46100-46119 | Msa1362930:CDS | 35.0% | |
| TCTTAGTGCAGGTAAACTTA+TGG | - | tig0018019:46111-46130 | Msa1362930:CDS | 35.0% | |
| ATGTTGACCAAGAAATCTCA+AGG | - | tig0018019:46214-46233 | Msa1362930:CDS | 35.0% | |
| ACTCCAATATTAGTCACCAT+TGG | + | tig0018019:46262-46281 | None:intergenic | 35.0% | |
| ! | TTTATGAATTTGATGGGTGG+TGG | - | tig0018019:46337-46356 | Msa1362930:CDS | 35.0% |
| GGAGATGTTTGTCAACAAAA+TGG | - | tig0018019:46388-46407 | Msa1362930:CDS | 35.0% | |
| TCATAACCAACGACTCTTCA+AGG | - | tig0018019:45780-45799 | Msa1362930:CDS | 40.0% | |
| GGAAGGCAACATTCAAGAAA+AGG | - | tig0018019:45801-45820 | Msa1362930:CDS | 40.0% | |
| CACAAGCATCAATTCCACAA+AGG | + | tig0018019:45865-45884 | None:intergenic | 40.0% | |
| ATCTCAATTGGGAGTCCAAA+GGG | - | tig0018019:45928-45947 | Msa1362930:CDS | 40.0% | |
| !! | TGAACTTGTTAAGCACCCTT+TGG | + | tig0018019:45946-45965 | None:intergenic | 40.0% |
| ! | TCAATTGCTCTTTCGCCTTT+TGG | + | tig0018019:46036-46055 | None:intergenic | 40.0% |
| ATATTAGTCACCATTGGTGG+TGG | + | tig0018019:46256-46275 | None:intergenic | 40.0% | |
| CCAATATTAGTCACCATTGG+TGG | + | tig0018019:46259-46278 | None:intergenic | 40.0% | |
| CCACCAATGGTGACTAATAT+TGG | - | tig0018019:46256-46275 | Msa1362930:CDS | 40.0% | |
| TGGGAATGACAAAACTCCTT+TGG | - | tig0018019:46366-46385 | Msa1362930:CDS | 40.0% | |
| GGGAATGACAAAACTCCTTT+GGG | - | tig0018019:46367-46386 | Msa1362930:CDS | 40.0% | |
| TGTTGACAAACATCTCCCAA+AGG | + | tig0018019:46385-46404 | None:intergenic | 40.0% | |
| AACCAACGACTCTTCAAGGA+AGG | - | tig0018019:45784-45803 | Msa1362930:CDS | 45.0% | |
| AGTGAACTTAGCACCCTTTG+TGG | - | tig0018019:45848-45867 | Msa1362930:CDS | 45.0% | |
| TCCTTATGATCCTCAACCAG+AGG | - | tig0018019:45898-45917 | Msa1362930:CDS | 45.0% | |
| ACCTCTGGTTGAGGATCATA+AGG | + | tig0018019:45902-45921 | None:intergenic | 45.0% | |
| ATGATCCTCAACCAGAGGTT+TGG | - | tig0018019:45903-45922 | Msa1362930:CDS | 45.0% | |
| AATTGAGATGGCCAAACCTC+TGG | + | tig0018019:45917-45936 | None:intergenic | 45.0% | |
| AGAGGTTTGGCCATCTCAAT+TGG | - | tig0018019:45916-45935 | Msa1362930:CDS | 45.0% | |
| GAGGTTTGGCCATCTCAATT+GGG | - | tig0018019:45917-45936 | Msa1362930:CDS | 45.0% | |
| CTTTGGACTCCCAATTGAGA+TGG | + | tig0018019:45929-45948 | None:intergenic | 45.0% | |
| CATCTCAATTGGGAGTCCAA+AGG | - | tig0018019:45927-45946 | Msa1362930:CDS | 45.0% | |
| ! | ATGAATTTGATGGGTGGTGG+TGG | - | tig0018019:46340-46359 | Msa1362930:CDS | 45.0% |
| TGCCTTCCTTGAAGAGTCGT+TGG | + | tig0018019:45789-45808 | None:intergenic | 50.0% | |
| TCAAATGGCACCACCACCAA+TGG | - | tig0018019:46243-46262 | Msa1362930:CDS | 50.0% | |
| !! | AATTTGATGGGTGGTGGTGG+TGG | - | tig0018019:46343-46362 | Msa1362930:CDS | 50.0% |
| GATGGCCAAACCTCTGGTTG+AGG | + | tig0018019:45911-45930 | None:intergenic | 55.0% | |
| !! | TTGATGGGTGGTGGTGGTGG+TGG | - | tig0018019:46346-46365 | Msa1362930:CDS | 60.0% |
| !! | TGATGGGTGGTGGTGGTGGT+GGG | - | tig0018019:46347-46366 | Msa1362930:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0018019 | gene | 45752 | 46438 | 45752 | ID=Msa1362930;Name=Msa1362930 |
| tig0018019 | mRNA | 45752 | 46438 | 45752 | ID=Msa1362930-mRNA-1;Parent=Msa1362930;Name=Msa1362930-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|-1|0|1|-1|1|1|0|228 |
| tig0018019 | exon | 45752 | 46438 | 45752 | ID=Msa1362930-mRNA-1:exon:13293;Parent=Msa1362930-mRNA-1 |
| tig0018019 | CDS | 45752 | 46438 | 45752 | ID=Msa1362930-mRNA-1:cds;Parent=Msa1362930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
