Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1363670 | XP_003592857.1 | 78.824 | 340 | 26 | 5 | 1 | 336 | 1 | 298 | 0.0 | 529 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1363670 | sp|Q9C6P5|RAVL2_ARATH | 49.240 | 329 | 125 | 6 | 33 | 335 | 22 | 334 | 3.90e-97 | 293 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1363670 | G7IB22 | 78.824 | 340 | 26 | 5 | 1 | 336 | 1 | 298 | 0.0 | 529 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1363670 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1363670 | MtrunA17_Chr1g0213701 | 78.824 | 340 | 26 | 5 | 1 | 336 | 1 | 298 | 0.0 | 529 |
| Msa1363670 | MtrunA17_Chr1g0198661 | 42.609 | 230 | 110 | 4 | 38 | 245 | 63 | 292 | 1.70e-53 | 180 |
| Msa1363670 | MtrunA17_Chr5g0422501 | 43.363 | 226 | 110 | 5 | 38 | 245 | 106 | 331 | 5.93e-49 | 169 |
| Msa1363670 | MtrunA17_Chr8g0345771 | 56.667 | 90 | 39 | 0 | 156 | 245 | 170 | 259 | 2.48e-28 | 114 |
| Msa1363670 | MtrunA17_Chr7g0276471 | 55.556 | 90 | 40 | 0 | 156 | 245 | 116 | 205 | 4.63e-28 | 113 |
| Msa1363670 | MtrunA17_Chr1g0178071 | 54.945 | 91 | 39 | 1 | 157 | 245 | 75 | 165 | 6.41e-28 | 111 |
| Msa1363670 | MtrunA17_Chr7g0266821 | 58.333 | 84 | 34 | 1 | 162 | 245 | 65 | 147 | 1.34e-26 | 107 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1363670 | AT1G50680.1 | 49.240 | 329 | 125 | 6 | 33 | 335 | 22 | 334 | 3.97e-98 | 293 |
| Msa1363670 | AT1G51120.1 | 54.804 | 281 | 98 | 7 | 33 | 285 | 41 | 320 | 9.91e-97 | 291 |
| Msa1363670 | AT3G25730.1 | 46.903 | 226 | 95 | 7 | 36 | 246 | 59 | 274 | 1.81e-54 | 181 |
| Msa1363670 | AT1G13260.1 | 43.836 | 219 | 115 | 2 | 36 | 246 | 59 | 277 | 2.57e-54 | 181 |
| Msa1363670 | AT1G25560.1 | 42.986 | 221 | 114 | 4 | 38 | 246 | 71 | 291 | 9.37e-52 | 175 |
| Msa1363670 | AT1G68840.2 | 42.791 | 215 | 115 | 4 | 38 | 245 | 64 | 277 | 2.81e-49 | 168 |
| Msa1363670 | AT1G68840.1 | 42.791 | 215 | 115 | 4 | 38 | 245 | 64 | 277 | 2.81e-49 | 168 |
| Msa1363670 | AT1G01030.2 | 57.778 | 90 | 38 | 0 | 156 | 245 | 54 | 143 | 3.51e-29 | 115 |
| Msa1363670 | AT4G01500.1 | 55.769 | 104 | 43 | 2 | 156 | 259 | 34 | 134 | 3.76e-29 | 115 |
| Msa1363670 | AT1G01030.1 | 57.778 | 90 | 38 | 0 | 156 | 245 | 54 | 143 | 4.09e-29 | 115 |
| Msa1363670 | AT2G46870.1 | 56.044 | 91 | 40 | 0 | 156 | 246 | 33 | 123 | 1.75e-28 | 112 |
| Msa1363670 | AT3G11580.1 | 55.000 | 100 | 34 | 2 | 157 | 245 | 28 | 127 | 5.01e-28 | 110 |
| Msa1363670 | AT3G11580.4 | 55.000 | 100 | 34 | 2 | 157 | 245 | 28 | 127 | 1.14e-27 | 108 |
| Msa1363670 | AT3G11580.2 | 55.000 | 100 | 34 | 2 | 157 | 245 | 28 | 127 | 1.14e-27 | 108 |
| Msa1363670 | AT3G11580.5 | 55.000 | 100 | 34 | 2 | 157 | 245 | 28 | 127 | 1.14e-27 | 108 |
| Msa1363670 | AT2G36080.4 | 54.348 | 92 | 39 | 1 | 157 | 245 | 37 | 128 | 1.28e-27 | 106 |
| Msa1363670 | AT2G36080.2 | 54.348 | 92 | 39 | 1 | 157 | 245 | 37 | 128 | 1.28e-27 | 106 |
| Msa1363670 | AT2G36080.1 | 54.348 | 92 | 39 | 1 | 157 | 245 | 37 | 128 | 1.63e-27 | 108 |
| Msa1363670 | AT2G36080.3 | 54.348 | 92 | 39 | 1 | 157 | 245 | 37 | 128 | 1.78e-27 | 108 |
| Msa1363670 | AT5G06250.5 | 51.515 | 99 | 38 | 1 | 157 | 245 | 45 | 143 | 7.42e-27 | 107 |
| Msa1363670 | AT5G06250.4 | 51.515 | 99 | 38 | 1 | 157 | 245 | 45 | 143 | 7.44e-27 | 107 |
| Msa1363670 | AT5G06250.2 | 51.515 | 99 | 38 | 1 | 157 | 245 | 45 | 143 | 8.51e-27 | 107 |
| Msa1363670 | AT5G06250.3 | 51.515 | 99 | 38 | 1 | 157 | 245 | 45 | 143 | 9.89e-27 | 107 |
| Msa1363670 | AT5G06250.1 | 51.515 | 99 | 38 | 1 | 157 | 245 | 45 | 143 | 1.36e-26 | 106 |
| Msa1363670 | AT3G61970.1 | 56.383 | 94 | 36 | 2 | 156 | 245 | 21 | 113 | 1.63e-26 | 107 |
| Msa1363670 | AT3G11580.3 | 55.000 | 100 | 34 | 2 | 157 | 245 | 28 | 127 | 7.74e-26 | 106 |
| Msa1363670 | AT1G35520.1 | 37.037 | 108 | 66 | 2 | 142 | 247 | 109 | 216 | 2.21e-11 | 65.5 |
Find 71 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTACTATTTGTCAAATTTAT+AGG | 0.145940 | tig0018045:+72390 | None:intergenic |
| GGCAAAGAATGTGTTATTAT+TGG | 0.218931 | tig0018045:-72720 | Msa1363670:CDS |
| TATTCCATGCAAAGTTTCTA+TGG | 0.250455 | tig0018045:+72868 | None:intergenic |
| ATAAAATACAATGGCGTCTT+TGG | 0.254337 | tig0018045:+72422 | None:intergenic |
| GCAAAGAATGTGTTATTATT+GGG | 0.266195 | tig0018045:-72719 | Msa1363670:CDS |
| AAGAAATGTTGCAAAATTAG+AGG | 0.290015 | tig0018045:+72764 | None:intergenic |
| CATGGAGGCTTAAGGCTCTT+TGG | 0.298082 | tig0018045:-72159 | Msa1363670:CDS |
| CAATCTACTAAGATAAATTA+TGG | 0.303691 | tig0018045:-73089 | Msa1363670:CDS |
| ATGCAAATCACCAAAGAATA+TGG | 0.307810 | tig0018045:-72968 | Msa1363670:CDS |
| TATATAGCATGATTTCAAAT+TGG | 0.322219 | tig0018045:-73139 | None:intergenic |
| GGAAGTTTCGATATTGCTAT+TGG | 0.351130 | tig0018045:-72512 | Msa1363670:CDS |
| GCCACAAACCAAAGGAAAAT+AGG | 0.354261 | tig0018045:+72587 | None:intergenic |
| CCTTCTTCCCAACATTTGTT+TGG | 0.354495 | tig0018045:+72266 | None:intergenic |
| ATGTCCCTAACCATATTCTT+TGG | 0.362080 | tig0018045:+72958 | None:intergenic |
| ATTACATCAATTAATGAAAA+TGG | 0.362300 | tig0018045:+72354 | None:intergenic |
| TTCTCCGCTTCTGAGCTTGA+TGG | 0.364773 | tig0018045:+72893 | None:intergenic |
| TATAAATTTGACAAATAGTA+AGG | 0.384791 | tig0018045:-72388 | Msa1363670:CDS |
| TATGAAGTAGAGGATGTTGC+AGG | 0.394052 | tig0018045:-73050 | Msa1363670:CDS |
| AATCACCAAAGAATATGGTT+AGG | 0.402926 | tig0018045:-72963 | Msa1363670:CDS |
| GCCTCAACAAAATGGACATT+GGG | 0.403364 | tig0018045:-73003 | Msa1363670:CDS |
| ATTATGATCATGATTAGAAA+TGG | 0.417587 | tig0018045:-72795 | Msa1363670:CDS |
| GTGATGTTGGTAAACTCAAT+AGG | 0.419636 | tig0018045:-72638 | Msa1363670:CDS |
| GGGGTTGTGCCTCAACAAAA+TGG | 0.424759 | tig0018045:-73011 | Msa1363670:CDS |
| CTATATTGACTTTGAAACAT+AGG | 0.426018 | tig0018045:+72828 | None:intergenic |
| ATTTCAAATTGGAGGATGAA+TGG | 0.438567 | tig0018045:-73128 | Msa1363670:CDS |
| ATGCGCATTATTATTATATG+TGG | 0.438761 | tig0018045:+72179 | None:intergenic |
| CTCTAGTGAACACATAGCTT+TGG | 0.447985 | tig0018045:+72481 | None:intergenic |
| CCAAACAAATGTTGGGAAGA+AGG | 0.452002 | tig0018045:-72266 | Msa1363670:CDS |
| TGGAGATGCCAAACAAATGT+TGG | 0.476126 | tig0018045:-72274 | Msa1363670:CDS |
| CAGGGTGTCAAAAGTTCAAA+GGG | 0.485838 | tig0018045:-73031 | Msa1363670:CDS |
| TGTGAAGGATAAGAAATTGA+AGG | 0.491722 | tig0018045:-72445 | Msa1363670:CDS |
| ATAGCATGATTTCAAATTGG+AGG | 0.493608 | tig0018045:-73136 | None:intergenic |
| TATTATTGGGGTGAAGGGTG+AGG | 0.498083 | tig0018045:-72706 | Msa1363670:CDS |
| GTAATCTACAATGATATTGA+TGG | 0.499329 | tig0018045:-72336 | Msa1363670:CDS |
| AAGGTTAGTTTGCAATGAAG+TGG | 0.504843 | tig0018045:-72247 | Msa1363670:CDS |
| AGAAATGTTGCAAAATTAGA+GGG | 0.510603 | tig0018045:+72765 | None:intergenic |
| ATCTGAAAGAGATGCTGCCA+TGG | 0.516688 | tig0018045:-72931 | Msa1363670:CDS |
| GGAGATGCCAAACAAATGTT+GGG | 0.517841 | tig0018045:-72273 | Msa1363670:CDS |
| ATCACCAAAGAATATGGTTA+GGG | 0.522601 | tig0018045:-72962 | Msa1363670:CDS |
| CACATTCTTTGCCTGCACCT+TGG | 0.523069 | tig0018045:+72730 | None:intergenic |
| TGTTCACTAGAGGATGGAAT+CGG | 0.528136 | tig0018045:-72470 | Msa1363670:CDS |
| ATGTGTTATTATTGGGGTGA+AGG | 0.530392 | tig0018045:-72712 | Msa1363670:CDS |
| TGCCTCAACAAAATGGACAT+TGG | 0.540531 | tig0018045:-73004 | Msa1363670:CDS |
| AGAAATCAAAGCCAAGGTGC+AGG | 0.541294 | tig0018045:-72741 | Msa1363670:CDS |
| ACATATAATAATAATGCGCA+TGG | 0.545840 | tig0018045:-72177 | Msa1363670:CDS |
| TGTGTTATTATTGGGGTGAA+GGG | 0.552552 | tig0018045:-72711 | Msa1363670:CDS |
| ATAATGCGCATGGAGGCTTA+AGG | 0.552920 | tig0018045:-72167 | Msa1363670:CDS |
| GAATTAACACCAAGTGATGT+TGG | 0.555091 | tig0018045:-72651 | Msa1363670:CDS |
| TCCGCTTCTGAGCTTGATGG+TGG | 0.555403 | tig0018045:+72896 | None:intergenic |
| TTTCTTAGAAATCAAAGCCA+AGG | 0.556760 | tig0018045:-72747 | Msa1363670:CDS |
| GCAGGGTGTCAAAAGTTCAA+AGG | 0.558717 | tig0018045:-73032 | Msa1363670:CDS |
| GCCACCATCAAGCTCAGAAG+CGG | 0.559505 | tig0018045:-72897 | Msa1363670:CDS |
| CAAAGAATGTGTTATTATTG+GGG | 0.559724 | tig0018045:-72718 | Msa1363670:CDS |
| ACGTACGAGGTATGAAGTAG+AGG | 0.570592 | tig0018045:-73060 | Msa1363670:CDS |
| TTGAGTTTACCAACATCACT+TGG | 0.572392 | tig0018045:+72642 | None:intergenic |
| ATGACAAACTCATGCGATTG+TGG | 0.577545 | tig0018045:-72533 | Msa1363670:CDS |
| GTTTCAAAGTCAATATAGCA+TGG | 0.588580 | tig0018045:-72823 | Msa1363670:CDS |
| CAAAGCTATGTGTTCACTAG+AGG | 0.590350 | tig0018045:-72480 | Msa1363670:CDS |
| GCTATGTGTTCACTAGAGGA+TGG | 0.591052 | tig0018045:-72476 | Msa1363670:CDS |
| ATAAATTTGACAAATAGTAA+GGG | 0.592698 | tig0018045:-72387 | Msa1363670:CDS |
| ATGAAGTAGAGGATGTTGCA+GGG | 0.600015 | tig0018045:-73049 | Msa1363670:CDS |
| CATATATTGCCACAAACCAA+AGG | 0.617126 | tig0018045:+72579 | None:intergenic |
| AAAGCCATAGAAACTTTGCA+TGG | 0.630622 | tig0018045:-72872 | Msa1363670:CDS |
| AGGATGGAATCGGTTTGTGA+AGG | 0.633521 | tig0018045:-72460 | Msa1363670:CDS |
| TTCACACCTATAAAATACAA+TGG | 0.647499 | tig0018045:+72413 | None:intergenic |
| GGTGGCGCTGTCGTAAGCCA+TGG | 0.650796 | tig0018045:+72914 | None:intergenic |
| TATAATAATAATGCGCATGG+AGG | 0.652988 | tig0018045:-72174 | Msa1363670:CDS |
| GAAATGTTGCAAAATTAGAG+GGG | 0.681722 | tig0018045:+72766 | None:intergenic |
| ATTATGGTGCAAAACGTACG+AGG | 0.696082 | tig0018045:-73073 | Msa1363670:CDS |
| CCTCAACAAAATGGACATTG+GGG | 0.726013 | tig0018045:-73002 | Msa1363670:CDS |
| AGGGTGTCAAAAGTTCAAAG+GGG | 0.762139 | tig0018045:-73030 | Msa1363670:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTACTATTTGTCAAATTTAT+AGG | + | tig0018045:72887-72906 | None:intergenic | 15.0% |
| !! | TATAAATTTGACAAATAGTA+AGG | - | tig0018045:72886-72905 | Msa1363670:CDS | 15.0% |
| !! | ATAAATTTGACAAATAGTAA+GGG | - | tig0018045:72887-72906 | Msa1363670:CDS | 15.0% |
| !! | ATTACATCAATTAATGAAAA+TGG | + | tig0018045:72923-72942 | None:intergenic | 15.0% |
| !! | TTACTATTTGTCAAATTTAT+AGG | + | tig0018045:72887-72906 | None:intergenic | 15.0% |
| !! | TATAAATTTGACAAATAGTA+AGG | - | tig0018045:72886-72905 | Msa1363670:CDS | 15.0% |
| !! | ATAAATTTGACAAATAGTAA+GGG | - | tig0018045:72887-72906 | Msa1363670:CDS | 15.0% |
| !! | ATTACATCAATTAATGAAAA+TGG | + | tig0018045:72923-72942 | None:intergenic | 15.0% |
| !! | CAATCTACTAAGATAAATTA+TGG | - | tig0018045:72185-72204 | Msa1363670:CDS | 20.0% |
| !! | ATTATGATCATGATTAGAAA+TGG | - | tig0018045:72479-72498 | Msa1363670:CDS | 20.0% |
| !! | CAATCTACTAAGATAAATTA+TGG | - | tig0018045:72185-72204 | Msa1363670:CDS | 20.0% |
| !! | ATTATGATCATGATTAGAAA+TGG | - | tig0018045:72479-72498 | Msa1363670:CDS | 20.0% |
| !!! | CTATATTGACTTTGAAACAT+AGG | + | tig0018045:72449-72468 | None:intergenic | 25.0% |
| ! | AGAAATGTTGCAAAATTAGA+GGG | + | tig0018045:72512-72531 | None:intergenic | 25.0% |
| ! | AAGAAATGTTGCAAAATTAG+AGG | + | tig0018045:72513-72532 | None:intergenic | 25.0% |
| !! | GCAAAGAATGTGTTATTATT+GGG | - | tig0018045:72555-72574 | Msa1363670:CDS | 25.0% |
| !! | CAAAGAATGTGTTATTATTG+GGG | - | tig0018045:72556-72575 | Msa1363670:CDS | 25.0% |
| ! | TTCACACCTATAAAATACAA+TGG | + | tig0018045:72864-72883 | None:intergenic | 25.0% |
| ! | GTAATCTACAATGATATTGA+TGG | - | tig0018045:72938-72957 | Msa1363670:CDS | 25.0% |
| !!! | ACATTATTCTTTTGAAGATG+AGG | - | tig0018045:72973-72992 | Msa1363670:CDS | 25.0% |
| ! | ATGCGCATTATTATTATATG+TGG | + | tig0018045:73098-73117 | None:intergenic | 25.0% |
| ! | ACATATAATAATAATGCGCA+TGG | - | tig0018045:73097-73116 | Msa1363670:CDS | 25.0% |
| !!! | CTATATTGACTTTGAAACAT+AGG | + | tig0018045:72449-72468 | None:intergenic | 25.0% |
| ! | AGAAATGTTGCAAAATTAGA+GGG | + | tig0018045:72512-72531 | None:intergenic | 25.0% |
| ! | AAGAAATGTTGCAAAATTAG+AGG | + | tig0018045:72513-72532 | None:intergenic | 25.0% |
| !! | GCAAAGAATGTGTTATTATT+GGG | - | tig0018045:72555-72574 | Msa1363670:CDS | 25.0% |
| !! | CAAAGAATGTGTTATTATTG+GGG | - | tig0018045:72556-72575 | Msa1363670:CDS | 25.0% |
| ! | TTCACACCTATAAAATACAA+TGG | + | tig0018045:72864-72883 | None:intergenic | 25.0% |
| ! | GTAATCTACAATGATATTGA+TGG | - | tig0018045:72938-72957 | Msa1363670:CDS | 25.0% |
| !!! | ACATTATTCTTTTGAAGATG+AGG | - | tig0018045:72973-72992 | Msa1363670:CDS | 25.0% |
| ! | ATGCGCATTATTATTATATG+TGG | + | tig0018045:73098-73117 | None:intergenic | 25.0% |
| ! | ACATATAATAATAATGCGCA+TGG | - | tig0018045:73097-73116 | Msa1363670:CDS | 25.0% |
| ATTTCAAATTGGAGGATGAA+TGG | - | tig0018045:72146-72165 | Msa1363670:CDS | 30.0% | |
| ATGCAAATCACCAAAGAATA+TGG | - | tig0018045:72306-72325 | Msa1363670:CDS | 30.0% | |
| AATCACCAAAGAATATGGTT+AGG | - | tig0018045:72311-72330 | Msa1363670:CDS | 30.0% | |
| ATCACCAAAGAATATGGTTA+GGG | - | tig0018045:72312-72331 | Msa1363670:CDS | 30.0% | |
| TATTCCATGCAAAGTTTCTA+TGG | + | tig0018045:72409-72428 | None:intergenic | 30.0% | |
| GTTTCAAAGTCAATATAGCA+TGG | - | tig0018045:72451-72470 | Msa1363670:CDS | 30.0% | |
| GAAATGTTGCAAAATTAGAG+GGG | + | tig0018045:72511-72530 | None:intergenic | 30.0% | |
| TTTCTTAGAAATCAAAGCCA+AGG | - | tig0018045:72527-72546 | Msa1363670:CDS | 30.0% | |
| ! | GGCAAAGAATGTGTTATTAT+TGG | - | tig0018045:72554-72573 | Msa1363670:CDS | 30.0% |
| !!! | TAGGTAACTGCATGTTTTTT+GGG | + | tig0018045:72671-72690 | None:intergenic | 30.0% |
| !!! | ATAGGTAACTGCATGTTTTT+TGG | + | tig0018045:72672-72691 | None:intergenic | 30.0% |
| TGTGAAGGATAAGAAATTGA+AGG | - | tig0018045:72829-72848 | Msa1363670:CDS | 30.0% | |
| ATAAAATACAATGGCGTCTT+TGG | + | tig0018045:72855-72874 | None:intergenic | 30.0% | |
| ! | AAGACGCCATTGTATTTTAT+AGG | - | tig0018045:72855-72874 | Msa1363670:CDS | 30.0% |
| !! | TTATTCTTTTGAAGATGAGG+AGG | - | tig0018045:72976-72995 | Msa1363670:CDS | 30.0% |
| TATAATAATAATGCGCATGG+AGG | - | tig0018045:73100-73119 | Msa1363670:CDS | 30.0% | |
| ATTTCAAATTGGAGGATGAA+TGG | - | tig0018045:72146-72165 | Msa1363670:CDS | 30.0% | |
| ATGCAAATCACCAAAGAATA+TGG | - | tig0018045:72306-72325 | Msa1363670:CDS | 30.0% | |
| AATCACCAAAGAATATGGTT+AGG | - | tig0018045:72311-72330 | Msa1363670:CDS | 30.0% | |
| ATCACCAAAGAATATGGTTA+GGG | - | tig0018045:72312-72331 | Msa1363670:CDS | 30.0% | |
| TATTCCATGCAAAGTTTCTA+TGG | + | tig0018045:72409-72428 | None:intergenic | 30.0% | |
| GTTTCAAAGTCAATATAGCA+TGG | - | tig0018045:72451-72470 | Msa1363670:CDS | 30.0% | |
| GAAATGTTGCAAAATTAGAG+GGG | + | tig0018045:72511-72530 | None:intergenic | 30.0% | |
| TTTCTTAGAAATCAAAGCCA+AGG | - | tig0018045:72527-72546 | Msa1363670:CDS | 30.0% | |
| ! | GGCAAAGAATGTGTTATTAT+TGG | - | tig0018045:72554-72573 | Msa1363670:CDS | 30.0% |
| !!! | TAGGTAACTGCATGTTTTTT+GGG | + | tig0018045:72671-72690 | None:intergenic | 30.0% |
| !!! | ATAGGTAACTGCATGTTTTT+TGG | + | tig0018045:72672-72691 | None:intergenic | 30.0% |
| TGTGAAGGATAAGAAATTGA+AGG | - | tig0018045:72829-72848 | Msa1363670:CDS | 30.0% | |
| ATAAAATACAATGGCGTCTT+TGG | + | tig0018045:72855-72874 | None:intergenic | 30.0% | |
| ! | AAGACGCCATTGTATTTTAT+AGG | - | tig0018045:72855-72874 | Msa1363670:CDS | 30.0% |
| !! | TTATTCTTTTGAAGATGAGG+AGG | - | tig0018045:72976-72995 | Msa1363670:CDS | 30.0% |
| TATAATAATAATGCGCATGG+AGG | - | tig0018045:73100-73119 | Msa1363670:CDS | 30.0% | |
| ATGTCCCTAACCATATTCTT+TGG | + | tig0018045:72319-72338 | None:intergenic | 35.0% | |
| AAAGCCATAGAAACTTTGCA+TGG | - | tig0018045:72402-72421 | Msa1363670:CDS | 35.0% | |
| ! | ATGTGTTATTATTGGGGTGA+AGG | - | tig0018045:72562-72581 | Msa1363670:CDS | 35.0% |
| ! | TGTGTTATTATTGGGGTGAA+GGG | - | tig0018045:72563-72582 | Msa1363670:CDS | 35.0% |
| GAATTAACACCAAGTGATGT+TGG | - | tig0018045:72623-72642 | Msa1363670:CDS | 35.0% | |
| TTGAGTTTACCAACATCACT+TGG | + | tig0018045:72635-72654 | None:intergenic | 35.0% | |
| ! | GTGATGTTGGTAAACTCAAT+AGG | - | tig0018045:72636-72655 | Msa1363670:CDS | 35.0% |
| !!! | AGGTAACTGCATGTTTTTTG+GGG | + | tig0018045:72670-72689 | None:intergenic | 35.0% |
| ! | TGCAGTTACCTATTTTCCTT+TGG | - | tig0018045:72679-72698 | Msa1363670:CDS | 35.0% |
| !!! | ACCTATTTTCCTTTGGTTTG+TGG | - | tig0018045:72686-72705 | Msa1363670:CDS | 35.0% |
| CATATATTGCCACAAACCAA+AGG | + | tig0018045:72698-72717 | None:intergenic | 35.0% | |
| GGAAGTTTCGATATTGCTAT+TGG | - | tig0018045:72762-72781 | Msa1363670:CDS | 35.0% | |
| !! | AAGGTTAGTTTGCAATGAAG+TGG | - | tig0018045:73027-73046 | Msa1363670:CDS | 35.0% |
| ATGTCCCTAACCATATTCTT+TGG | + | tig0018045:72319-72338 | None:intergenic | 35.0% | |
| AAAGCCATAGAAACTTTGCA+TGG | - | tig0018045:72402-72421 | Msa1363670:CDS | 35.0% | |
| ! | ATGTGTTATTATTGGGGTGA+AGG | - | tig0018045:72562-72581 | Msa1363670:CDS | 35.0% |
| ! | TGTGTTATTATTGGGGTGAA+GGG | - | tig0018045:72563-72582 | Msa1363670:CDS | 35.0% |
| GAATTAACACCAAGTGATGT+TGG | - | tig0018045:72623-72642 | Msa1363670:CDS | 35.0% | |
| TTGAGTTTACCAACATCACT+TGG | + | tig0018045:72635-72654 | None:intergenic | 35.0% | |
| ! | GTGATGTTGGTAAACTCAAT+AGG | - | tig0018045:72636-72655 | Msa1363670:CDS | 35.0% |
| !!! | AGGTAACTGCATGTTTTTTG+GGG | + | tig0018045:72670-72689 | None:intergenic | 35.0% |
| ! | TGCAGTTACCTATTTTCCTT+TGG | - | tig0018045:72679-72698 | Msa1363670:CDS | 35.0% |
| !!! | ACCTATTTTCCTTTGGTTTG+TGG | - | tig0018045:72686-72705 | Msa1363670:CDS | 35.0% |
| CATATATTGCCACAAACCAA+AGG | + | tig0018045:72698-72717 | None:intergenic | 35.0% | |
| GGAAGTTTCGATATTGCTAT+TGG | - | tig0018045:72762-72781 | Msa1363670:CDS | 35.0% | |
| !! | AAGGTTAGTTTGCAATGAAG+TGG | - | tig0018045:73027-73046 | Msa1363670:CDS | 35.0% |
| ATTATGGTGCAAAACGTACG+AGG | - | tig0018045:72201-72220 | Msa1363670:CDS | 40.0% | |
| TATGAAGTAGAGGATGTTGC+AGG | - | tig0018045:72224-72243 | Msa1363670:CDS | 40.0% | |
| ATGAAGTAGAGGATGTTGCA+GGG | - | tig0018045:72225-72244 | Msa1363670:CDS | 40.0% | |
| ! | CAGGGTGTCAAAAGTTCAAA+GGG | - | tig0018045:72243-72262 | Msa1363670:CDS | 40.0% |
| ! | AGGGTGTCAAAAGTTCAAAG+GGG | - | tig0018045:72244-72263 | Msa1363670:CDS | 40.0% |
| TGCCTCAACAAAATGGACAT+TGG | - | tig0018045:72270-72289 | Msa1363670:CDS | 40.0% | |
| GCCTCAACAAAATGGACATT+GGG | - | tig0018045:72271-72290 | Msa1363670:CDS | 40.0% | |
| CCTCAACAAAATGGACATTG+GGG | - | tig0018045:72272-72291 | Msa1363670:CDS | 40.0% | |
| GCCACAAACCAAAGGAAAAT+AGG | + | tig0018045:72690-72709 | None:intergenic | 40.0% | |
| ATGACAAACTCATGCGATTG+TGG | - | tig0018045:72741-72760 | Msa1363670:CDS | 40.0% | |
| CTCTAGTGAACACATAGCTT+TGG | + | tig0018045:72796-72815 | None:intergenic | 40.0% | |
| CAAAGCTATGTGTTCACTAG+AGG | - | tig0018045:72794-72813 | Msa1363670:CDS | 40.0% | |
| TGTTCACTAGAGGATGGAAT+CGG | - | tig0018045:72804-72823 | Msa1363670:CDS | 40.0% | |
| !! | TCTTTTGAAGATGAGGAGGA+TGG | - | tig0018045:72980-72999 | Msa1363670:CDS | 40.0% |
| TGGAGATGCCAAACAAATGT+TGG | - | tig0018045:73000-73019 | Msa1363670:CDS | 40.0% | |
| GGAGATGCCAAACAAATGTT+GGG | - | tig0018045:73001-73020 | Msa1363670:CDS | 40.0% | |
| CCTTCTTCCCAACATTTGTT+TGG | + | tig0018045:73011-73030 | None:intergenic | 40.0% | |
| CCAAACAAATGTTGGGAAGA+AGG | - | tig0018045:73008-73027 | Msa1363670:CDS | 40.0% | |
| ATTATGGTGCAAAACGTACG+AGG | - | tig0018045:72201-72220 | Msa1363670:CDS | 40.0% | |
| TATGAAGTAGAGGATGTTGC+AGG | - | tig0018045:72224-72243 | Msa1363670:CDS | 40.0% | |
| ATGAAGTAGAGGATGTTGCA+GGG | - | tig0018045:72225-72244 | Msa1363670:CDS | 40.0% | |
| ! | CAGGGTGTCAAAAGTTCAAA+GGG | - | tig0018045:72243-72262 | Msa1363670:CDS | 40.0% |
| ! | AGGGTGTCAAAAGTTCAAAG+GGG | - | tig0018045:72244-72263 | Msa1363670:CDS | 40.0% |
| TGCCTCAACAAAATGGACAT+TGG | - | tig0018045:72270-72289 | Msa1363670:CDS | 40.0% | |
| GCCTCAACAAAATGGACATT+GGG | - | tig0018045:72271-72290 | Msa1363670:CDS | 40.0% | |
| CCTCAACAAAATGGACATTG+GGG | - | tig0018045:72272-72291 | Msa1363670:CDS | 40.0% | |
| GCCACAAACCAAAGGAAAAT+AGG | + | tig0018045:72690-72709 | None:intergenic | 40.0% | |
| ATGACAAACTCATGCGATTG+TGG | - | tig0018045:72741-72760 | Msa1363670:CDS | 40.0% | |
| CTCTAGTGAACACATAGCTT+TGG | + | tig0018045:72796-72815 | None:intergenic | 40.0% | |
| CAAAGCTATGTGTTCACTAG+AGG | - | tig0018045:72794-72813 | Msa1363670:CDS | 40.0% | |
| TGTTCACTAGAGGATGGAAT+CGG | - | tig0018045:72804-72823 | Msa1363670:CDS | 40.0% | |
| !! | TCTTTTGAAGATGAGGAGGA+TGG | - | tig0018045:72980-72999 | Msa1363670:CDS | 40.0% |
| TGGAGATGCCAAACAAATGT+TGG | - | tig0018045:73000-73019 | Msa1363670:CDS | 40.0% | |
| GGAGATGCCAAACAAATGTT+GGG | - | tig0018045:73001-73020 | Msa1363670:CDS | 40.0% | |
| CCTTCTTCCCAACATTTGTT+TGG | + | tig0018045:73011-73030 | None:intergenic | 40.0% | |
| CCAAACAAATGTTGGGAAGA+AGG | - | tig0018045:73008-73027 | Msa1363670:CDS | 40.0% | |
| ACGTACGAGGTATGAAGTAG+AGG | - | tig0018045:72214-72233 | Msa1363670:CDS | 45.0% | |
| ! | GCAGGGTGTCAAAAGTTCAA+AGG | - | tig0018045:72242-72261 | Msa1363670:CDS | 45.0% |
| ! | CCCCAATGTCCATTTTGTTG+AGG | + | tig0018045:72275-72294 | None:intergenic | 45.0% |
| ATCTGAAAGAGATGCTGCCA+TGG | - | tig0018045:72343-72362 | Msa1363670:CDS | 45.0% | |
| AGAAATCAAAGCCAAGGTGC+AGG | - | tig0018045:72533-72552 | Msa1363670:CDS | 45.0% | |
| TATTATTGGGGTGAAGGGTG+AGG | - | tig0018045:72568-72587 | Msa1363670:CDS | 45.0% | |
| GCTATGTGTTCACTAGAGGA+TGG | - | tig0018045:72798-72817 | Msa1363670:CDS | 45.0% | |
| !! | AGGATGGAATCGGTTTGTGA+AGG | - | tig0018045:72814-72833 | Msa1363670:CDS | 45.0% |
| ATAATGCGCATGGAGGCTTA+AGG | - | tig0018045:73107-73126 | Msa1363670:CDS | 45.0% | |
| ACGTACGAGGTATGAAGTAG+AGG | - | tig0018045:72214-72233 | Msa1363670:CDS | 45.0% | |
| ! | GCAGGGTGTCAAAAGTTCAA+AGG | - | tig0018045:72242-72261 | Msa1363670:CDS | 45.0% |
| ! | CCCCAATGTCCATTTTGTTG+AGG | + | tig0018045:72275-72294 | None:intergenic | 45.0% |
| ATCTGAAAGAGATGCTGCCA+TGG | - | tig0018045:72343-72362 | Msa1363670:CDS | 45.0% | |
| AGAAATCAAAGCCAAGGTGC+AGG | - | tig0018045:72533-72552 | Msa1363670:CDS | 45.0% | |
| TATTATTGGGGTGAAGGGTG+AGG | - | tig0018045:72568-72587 | Msa1363670:CDS | 45.0% | |
| GCTATGTGTTCACTAGAGGA+TGG | - | tig0018045:72798-72817 | Msa1363670:CDS | 45.0% | |
| !! | AGGATGGAATCGGTTTGTGA+AGG | - | tig0018045:72814-72833 | Msa1363670:CDS | 45.0% |
| ATAATGCGCATGGAGGCTTA+AGG | - | tig0018045:73107-73126 | Msa1363670:CDS | 45.0% | |
| GGGGTTGTGCCTCAACAAAA+TGG | - | tig0018045:72263-72282 | Msa1363670:CDS | 50.0% | |
| TTCTCCGCTTCTGAGCTTGA+TGG | + | tig0018045:72384-72403 | None:intergenic | 50.0% | |
| CACATTCTTTGCCTGCACCT+TGG | + | tig0018045:72547-72566 | None:intergenic | 50.0% | |
| CATGGAGGCTTAAGGCTCTT+TGG | - | tig0018045:73115-73134 | Msa1363670:CDS | 50.0% | |
| GGGGTTGTGCCTCAACAAAA+TGG | - | tig0018045:72263-72282 | Msa1363670:CDS | 50.0% | |
| TTCTCCGCTTCTGAGCTTGA+TGG | + | tig0018045:72384-72403 | None:intergenic | 50.0% | |
| CACATTCTTTGCCTGCACCT+TGG | + | tig0018045:72547-72566 | None:intergenic | 50.0% | |
| CATGGAGGCTTAAGGCTCTT+TGG | - | tig0018045:73115-73134 | Msa1363670:CDS | 50.0% | |
| GCCACCATCAAGCTCAGAAG+CGG | - | tig0018045:72377-72396 | Msa1363670:CDS | 55.0% | |
| TCCGCTTCTGAGCTTGATGG+TGG | + | tig0018045:72381-72400 | None:intergenic | 55.0% | |
| GCCACCATCAAGCTCAGAAG+CGG | - | tig0018045:72377-72396 | Msa1363670:CDS | 55.0% | |
| TCCGCTTCTGAGCTTGATGG+TGG | + | tig0018045:72381-72400 | None:intergenic | 55.0% | |
| GGTGGCGCTGTCGTAAGCCA+TGG | + | tig0018045:72363-72382 | None:intergenic | 65.0% | |
| GGTGGCGCTGTCGTAAGCCA+TGG | + | tig0018045:72363-72382 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0018045 | gene | 72143 | 73153 | 72143 | ID=Msa1363670;Name=Msa1363670 |
| tig0018045 | mRNA | 72143 | 73153 | 72143 | ID=Msa1363670-mRNA-1;Parent=Msa1363670;Name=Msa1363670-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|336 |
| tig0018045 | exon | 72143 | 73153 | 72143 | ID=Msa1363670-mRNA-1:exon:13631;Parent=Msa1363670-mRNA-1 |
| tig0018045 | CDS | 72143 | 73153 | 72143 | ID=Msa1363670-mRNA-1:cds;Parent=Msa1363670-mRNA-1 |
| Gene Sequence |
| Protein sequence |
