Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1364230 | XP_024633082.1 | 95.652 | 345 | 15 | 0 | 1 | 345 | 1 | 345 | 0.0 | 665 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1364230 | sp|Q9LNP6|NFYA8_ARATH | 38.310 | 355 | 162 | 13 | 10 | 345 | 12 | 328 | 6.61e-53 | 180 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1364230 | A0A396JG16 | 95.652 | 345 | 15 | 0 | 1 | 345 | 1 | 345 | 0.0 | 665 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1364230 | TF | NF-YA |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1364230 | MtrunA17_Chr2g0329811 | 95.652 | 345 | 15 | 0 | 1 | 345 | 1 | 345 | 0.0 | 665 |
| Msa1364230 | MtrunA17_Chr8g0343451 | 51.471 | 340 | 120 | 12 | 23 | 345 | 7 | 318 | 1.91e-85 | 261 |
| Msa1364230 | MtrunA17_Chr2g0300261 | 55.882 | 136 | 48 | 4 | 121 | 253 | 19 | 145 | 3.45e-40 | 141 |
| Msa1364230 | MtrunA17_Chr2g0292411 | 50.435 | 115 | 53 | 1 | 168 | 282 | 95 | 205 | 3.88e-33 | 122 |
| Msa1364230 | MtrunA17_Chr3g0103391 | 50.376 | 133 | 51 | 3 | 114 | 246 | 112 | 229 | 4.62e-31 | 119 |
| Msa1364230 | MtrunA17_Chr8g0352251 | 56.311 | 103 | 40 | 1 | 144 | 246 | 117 | 214 | 9.48e-31 | 118 |
| Msa1364230 | MtrunA17_Chr1g0177091 | 41.844 | 141 | 67 | 4 | 108 | 245 | 95 | 223 | 3.31e-24 | 101 |
| Msa1364230 | MtrunA17_Chr7g0267581 | 51.000 | 100 | 40 | 3 | 147 | 246 | 136 | 226 | 3.91e-24 | 100 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1364230 | AT1G17590.3 | 38.310 | 355 | 162 | 13 | 10 | 345 | 12 | 328 | 6.72e-54 | 180 |
| Msa1364230 | AT1G17590.2 | 38.310 | 355 | 162 | 13 | 10 | 345 | 12 | 328 | 6.72e-54 | 180 |
| Msa1364230 | AT1G17590.4 | 38.310 | 355 | 162 | 13 | 10 | 345 | 12 | 328 | 6.72e-54 | 180 |
| Msa1364230 | AT1G17590.1 | 38.310 | 355 | 162 | 13 | 10 | 345 | 12 | 328 | 6.72e-54 | 180 |
| Msa1364230 | AT1G72830.1 | 35.813 | 363 | 188 | 13 | 2 | 345 | 4 | 340 | 2.26e-49 | 169 |
| Msa1364230 | AT1G72830.2 | 35.714 | 364 | 188 | 14 | 2 | 345 | 4 | 341 | 1.22e-47 | 164 |
| Msa1364230 | AT1G54160.1 | 38.281 | 256 | 107 | 8 | 22 | 250 | 11 | 242 | 3.75e-40 | 144 |
| Msa1364230 | AT3G14020.2 | 37.690 | 329 | 134 | 16 | 20 | 318 | 13 | 300 | 1.27e-39 | 142 |
| Msa1364230 | AT3G14020.1 | 37.690 | 329 | 134 | 16 | 20 | 318 | 13 | 300 | 1.27e-39 | 142 |
| Msa1364230 | AT1G72830.3 | 34.535 | 333 | 153 | 11 | 2 | 318 | 4 | 287 | 1.11e-37 | 137 |
| Msa1364230 | AT1G30500.2 | 52.344 | 128 | 57 | 2 | 131 | 254 | 41 | 168 | 1.37e-36 | 130 |
| Msa1364230 | AT1G30500.1 | 52.800 | 125 | 57 | 2 | 131 | 254 | 41 | 164 | 3.12e-36 | 130 |
| Msa1364230 | AT2G34720.1 | 51.613 | 124 | 51 | 3 | 123 | 246 | 44 | 158 | 2.91e-33 | 122 |
| Msa1364230 | AT2G34720.2 | 52.941 | 119 | 47 | 3 | 128 | 246 | 14 | 123 | 6.84e-32 | 117 |
| Msa1364230 | AT2G34720.3 | 52.941 | 119 | 47 | 3 | 128 | 246 | 14 | 123 | 6.84e-32 | 117 |
| Msa1364230 | AT3G20910.1 | 45.926 | 135 | 59 | 4 | 117 | 251 | 111 | 231 | 8.15e-30 | 116 |
| Msa1364230 | AT5G12840.5 | 46.269 | 134 | 56 | 4 | 116 | 248 | 116 | 234 | 4.20e-28 | 110 |
| Msa1364230 | AT5G12840.3 | 46.269 | 134 | 56 | 4 | 116 | 248 | 116 | 234 | 4.20e-28 | 110 |
| Msa1364230 | AT5G12840.1 | 46.269 | 134 | 56 | 4 | 116 | 248 | 116 | 234 | 4.20e-28 | 110 |
| Msa1364230 | AT5G12840.4 | 46.269 | 134 | 56 | 4 | 116 | 248 | 115 | 233 | 4.29e-28 | 110 |
| Msa1364230 | AT5G12840.2 | 46.269 | 134 | 56 | 4 | 116 | 248 | 115 | 233 | 4.29e-28 | 110 |
| Msa1364230 | AT5G06510.4 | 48.214 | 112 | 46 | 4 | 149 | 259 | 9 | 109 | 5.27e-24 | 97.4 |
| Msa1364230 | AT5G06510.7 | 48.214 | 112 | 46 | 4 | 149 | 259 | 9 | 109 | 5.27e-24 | 97.4 |
| Msa1364230 | AT5G06510.1 | 47.788 | 113 | 47 | 4 | 149 | 260 | 104 | 205 | 1.26e-23 | 98.6 |
| Msa1364230 | AT5G06510.5 | 47.788 | 113 | 47 | 4 | 149 | 260 | 104 | 205 | 1.26e-23 | 98.6 |
| Msa1364230 | AT5G06510.2 | 47.788 | 113 | 47 | 4 | 149 | 260 | 104 | 205 | 1.26e-23 | 98.6 |
| Msa1364230 | AT5G06510.6 | 47.788 | 113 | 47 | 4 | 149 | 260 | 104 | 205 | 1.26e-23 | 98.6 |
| Msa1364230 | AT5G06510.3 | 47.788 | 113 | 47 | 4 | 149 | 260 | 55 | 156 | 2.39e-23 | 96.7 |
| Msa1364230 | AT3G05690.1 | 48.544 | 103 | 39 | 4 | 147 | 245 | 107 | 199 | 8.42e-20 | 88.6 |
| Msa1364230 | AT3G05690.2 | 48.544 | 103 | 39 | 4 | 147 | 245 | 144 | 236 | 1.05e-19 | 89.0 |
Find 113 sgRNAs with CRISPR-Local
Find 252 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGCTTTGAATTCACATATA+TGG | 0.180422 | tig0018106:+283871 | None:intergenic |
| CACTTTGAAGCTCAAACTTT+TGG | 0.192638 | tig0018106:+285561 | None:intergenic |
| AAGAGAGACACCTTGGAAAT+TGG | 0.211241 | tig0018106:+286684 | None:intergenic |
| TTCAACCTGATCATGCATTT+TGG | 0.229189 | tig0018106:+283516 | None:intergenic |
| GCGAATCAAGCTTTGATTCT+TGG | 0.254868 | tig0018106:+283605 | None:intergenic |
| TTCATATGGCCAACAATATA+AGG | 0.305273 | tig0018106:-284435 | Msa1364230:intron |
| TATAGCTGGTGGAAACATTT+TGG | 0.306979 | tig0018106:+283572 | None:intergenic |
| GAGAACCGAGGAGAACAATA+TGG | 0.321909 | tig0018106:-284676 | Msa1364230:CDS |
| AAATTCTGACCAGCTTCTTC+AGG | 0.334629 | tig0018106:-283954 | Msa1364230:CDS |
| CTCATCGAATCATCATCTAT+TGG | 0.336945 | tig0018106:-284648 | Msa1364230:CDS |
| TGCTTTGAATTCACATATAT+GGG | 0.338735 | tig0018106:+283872 | None:intergenic |
| TTCCAGCATTGTTCTTCTAC+TGG | 0.343547 | tig0018106:-284711 | Msa1364230:CDS |
| ATATTTGATTTGATATTGTA+TGG | 0.343754 | tig0018106:-282992 | Msa1364230:three_prime_UTR |
| GGAGGATGGACGGTGAGATT+TGG | 0.358180 | tig0018106:+284621 | None:intergenic |
| AATTCCCTTGCCATCTGATA+TGG | 0.360890 | tig0018106:-283903 | Msa1364230:CDS |
| GCTTCTTCAGGGCCAGCTAA+TGG | 0.362306 | tig0018106:-283942 | Msa1364230:CDS |
| GGCCTACTTTCTGCTTCATA+TGG | 0.362322 | tig0018106:-284449 | Msa1364230:CDS |
| CACCGTCCATCCTCCACTAA+TGG | 0.364359 | tig0018106:-284613 | Msa1364230:CDS |
| TATTGTGTAGCCTATTGTTT+AGG | 0.371376 | tig0018106:-283131 | Msa1364230:three_prime_UTR |
| TATACTTGTTTGAATTTGAA+TGG | 0.374199 | tig0018106:-283553 | Msa1364230:CDS |
| TATCAGATGGCAAGGGAATT+CGG | 0.376992 | tig0018106:+283906 | None:intergenic |
| TACAAATTACCTTATATTGT+TGG | 0.397767 | tig0018106:+284426 | None:intergenic |
| AGAGAGACACCTTGGAAATT+GGG | 0.399599 | tig0018106:+286685 | None:intergenic |
| TCATCGAATCATCATCTATT+GGG | 0.410536 | tig0018106:-284647 | Msa1364230:CDS |
| CAGAAGCAGTTTCCATTAGC+TGG | 0.410914 | tig0018106:+283930 | None:intergenic |
| TGTCGGGACTCGTGAAGATA+TGG | 0.413042 | tig0018106:+283688 | None:intergenic |
| GTCGTTGGATTGAGATTGGC+AGG | 0.414168 | tig0018106:-282940 | Msa1364230:three_prime_UTR |
| TATATCTGCTTACAAGTGAT+TGG | 0.427209 | tig0018106:+284583 | None:intergenic |
| AGCACATAACAAACTCATAA+AGG | 0.430383 | tig0018106:-283804 | Msa1364230:CDS |
| CGTAGTCGTTGGATTGAGAT+TGG | 0.431388 | tig0018106:-282944 | Msa1364230:three_prime_UTR |
| GACTTCCCAATGGTAGAGAT+TGG | 0.446162 | tig0018106:+283222 | None:intergenic |
| TGTTCTCCAATCTCTACCAT+TGG | 0.450928 | tig0018106:-283228 | Msa1364230:three_prime_UTR |
| GAGACCAAGTACAACGCAAC+GGG | 0.451752 | tig0018106:-286957 | None:intergenic |
| TGAAATGTTTCAGCAGCAAC+AGG | 0.453392 | tig0018106:-283446 | Msa1364230:CDS |
| ATGTCACATACGGATCTCAT+AGG | 0.460134 | tig0018106:-283471 | Msa1364230:CDS |
| TACCATTGGGAAGTCATCCT+TGG | 0.465460 | tig0018106:-283214 | Msa1364230:three_prime_UTR |
| TTCCTTCCAGTCTGAGAAGA+AGG | 0.473570 | tig0018106:+283397 | None:intergenic |
| AATTCTGACCAGCTTCTTCA+GGG | 0.474643 | tig0018106:-283953 | Msa1364230:CDS |
| GTTCTCCAATCTCTACCATT+GGG | 0.476792 | tig0018106:-283227 | Msa1364230:three_prime_UTR |
| AGCAACAGGAGTTAGAGTTC+AGG | 0.485902 | tig0018106:-283432 | Msa1364230:CDS |
| CAAATTCAAACAAGTATAGC+TGG | 0.488784 | tig0018106:+283558 | None:intergenic |
| GAATTTGAATGGAAATATGT+CGG | 0.489962 | tig0018106:-283542 | Msa1364230:CDS |
| GGAATCCAAAATGCATGATC+AGG | 0.490416 | tig0018106:-283521 | Msa1364230:CDS |
| CTTTAATGCATGTACATGTC+GGG | 0.500813 | tig0018106:+283672 | None:intergenic |
| TCGACTGGCTCATCACAATC+AGG | 0.502357 | tig0018106:-285460 | Msa1364230:intron |
| GAAAGTAGGCCATTGTAGCC+TGG | 0.505229 | tig0018106:+284461 | None:intergenic |
| TATTTGATTTGATATTGTAT+GGG | 0.506084 | tig0018106:-282991 | Msa1364230:three_prime_UTR |
| GCACTCCACTATGCTGATCC+AGG | 0.508579 | tig0018106:-284479 | Msa1364230:CDS |
| AACCAGTAGAAGAACAATGC+TGG | 0.515161 | tig0018106:+284709 | None:intergenic |
| TATGAGGCGAAGACAGTGTC+GGG | 0.515554 | tig0018106:-283837 | Msa1364230:CDS |
| TCAGAAGATCTTCCCCATGA+TGG | 0.517971 | tig0018106:+285610 | None:intergenic |
| AGCAGTACCATGCTATTATG+AGG | 0.519657 | tig0018106:-283853 | Msa1364230:CDS |
| TCTTTAATGCATGTACATGT+CGG | 0.521057 | tig0018106:+283671 | None:intergenic |
| TGGAGAACACAATCAAATAG+TGG | 0.522439 | tig0018106:+283242 | None:intergenic |
| AGAACCGAGGAGAACAATAT+GGG | 0.525995 | tig0018106:-284675 | Msa1364230:CDS |
| AACTCAGTGCTTTACTGTTG+TGG | 0.539967 | tig0018106:+285518 | None:intergenic |
| AGCATTGAGAAAACGGCCAC+CGG | 0.542799 | tig0018106:+283636 | None:intergenic |
| TGTGACTCTATCGTAGTCGT+TGG | 0.542828 | tig0018106:-282955 | Msa1364230:three_prime_UTR |
| TAGATTGACATAGGAGTGGT+GGG | 0.545012 | tig0018106:+286817 | None:intergenic |
| ACATCCCATATTGTTCTCCT+CGG | 0.546379 | tig0018106:+284671 | None:intergenic |
| TGGATTGAGATTGGCAGGGA+CGG | 0.550298 | tig0018106:-282935 | Msa1364230:three_prime_UTR |
| CAAAAGTTTGAGCTTCAAAG+TGG | 0.551748 | tig0018106:-285560 | Msa1364230:CDS |
| TTCCGCCATATCAGATGGCA+AGG | 0.552797 | tig0018106:+283898 | None:intergenic |
| TTAGCTGGCCCTGAAGAAGC+TGG | 0.554264 | tig0018106:+283945 | None:intergenic |
| GTAGAAGAACAATGCTGGAA+AGG | 0.555226 | tig0018106:+284714 | None:intergenic |
| TTAAAGAGAGCTAGAGGTGC+CGG | 0.556911 | tig0018106:-283655 | Msa1364230:CDS |
| CTAAATCCACCCAATTTCCA+AGG | 0.559695 | tig0018106:-286694 | Msa1364230:intron |
| TCATCTTCAACTCAATCGAC+TGG | 0.564458 | tig0018106:-285475 | Msa1364230:CDS |
| GAAACTGTGCATGTGTTTAG+TGG | 0.564613 | tig0018106:+286725 | None:intergenic |
| AAACTGTGCATGTGTTTAGT+GGG | 0.565424 | tig0018106:+286726 | None:intergenic |
| ATTTGATTTGATATTGTATG+GGG | 0.566050 | tig0018106:-282990 | Msa1364230:three_prime_UTR |
| GATGAGTCATAGATTGACAT+AGG | 0.567891 | tig0018106:+286808 | None:intergenic |
| GATTGGCTGTGATCCATTAG+TGG | 0.569834 | tig0018106:+284600 | None:intergenic |
| TTACTGTTGTGGCATTCTTG+TGG | 0.577080 | tig0018106:+285529 | None:intergenic |
| ACCCTTCTTCTCAGACTGGA+AGG | 0.577435 | tig0018106:-283399 | Msa1364230:CDS |
| CTCACATGCGGACGGATAGT+CGG | 0.579968 | tig0018106:+283329 | None:intergenic |
| TGTAGCCTGGATCAGCATAG+TGG | 0.581932 | tig0018106:+284474 | None:intergenic |
| ATGATGGACATCCGAAAACA+TGG | 0.581989 | tig0018106:+285626 | None:intergenic |
| GATGCTTCTGATGTCACATA+CGG | 0.584773 | tig0018106:-283481 | Msa1364230:CDS |
| TATGCTGATCCAGGCTACAA+TGG | 0.586886 | tig0018106:-284470 | Msa1364230:CDS |
| GGTTCTTCCGCCATATCAGA+TGG | 0.587888 | tig0018106:+283893 | None:intergenic |
| ATAGATTGACATAGGAGTGG+TGG | 0.601547 | tig0018106:+286816 | None:intergenic |
| GAGACACCTTGGAAATTGGG+TGG | 0.604945 | tig0018106:+286688 | None:intergenic |
| TCCCTTGCCATCTGATATGG+CGG | 0.605293 | tig0018106:-283900 | Msa1364230:CDS |
| AGTTACCCTTCTTCTCAGAC+TGG | 0.606122 | tig0018106:-283403 | Msa1364230:CDS |
| ATTCAAACAAGTATAGCTGG+TGG | 0.610080 | tig0018106:+283561 | None:intergenic |
| GGCCATATGAAGCAGAAAGT+AGG | 0.615452 | tig0018106:+284447 | None:intergenic |
| TACAAAGCTGACAAGAATGT+TGG | 0.616527 | tig0018106:-283364 | Msa1364230:CDS |
| TTATGAGGCGAAGACAGTGT+CGG | 0.619331 | tig0018106:-283838 | Msa1364230:CDS |
| ACATAAGTAAATATGAGCCA+AGG | 0.627513 | tig0018106:+283197 | None:intergenic |
| ATCCATTAGTGGAGGATGGA+CGG | 0.629213 | tig0018106:+284611 | None:intergenic |
| AGAGACCAAGTACAACGCAA+CGG | 0.633643 | tig0018106:-286958 | None:intergenic |
| ACAAGTCTCTCACATGCGGA+CGG | 0.640777 | tig0018106:+283321 | None:intergenic |
| GTCTTCGCCTCATAATAGCA+TGG | 0.641090 | tig0018106:+283846 | None:intergenic |
| TCCTTCCAGTCTGAGAAGAA+GGG | 0.646710 | tig0018106:+283398 | None:intergenic |
| CATGCATTAAAGAGAGCTAG+AGG | 0.647089 | tig0018106:-283661 | Msa1364230:CDS |
| TTCTACAAGTCTCTCACATG+CGG | 0.648923 | tig0018106:+283317 | None:intergenic |
| TGTGATCCATTAGTGGAGGA+TGG | 0.649182 | tig0018106:+284607 | None:intergenic |
| TGTAGAACACATCATTGTGG+TGG | 0.651381 | tig0018106:-283301 | Msa1364230:three_prime_UTR |
| ACAACAAATAAAGTCACACT+AGG | 0.653661 | tig0018106:+283050 | None:intergenic |
| ATGGACATCCGAAAACATGG+TGG | 0.657816 | tig0018106:+285629 | None:intergenic |
| TGGACATCCGAAAACATGGT+GGG | 0.659209 | tig0018106:+285630 | None:intergenic |
| GTCATAGATTGACATAGGAG+TGG | 0.661000 | tig0018106:+286813 | None:intergenic |
| AGCCAAGGATGACTTCCCAA+TGG | 0.667631 | tig0018106:+283212 | None:intergenic |
| TCGTTGGATTGAGATTGGCA+GGG | 0.677474 | tig0018106:-282939 | Msa1364230:three_prime_UTR |
| TCCGCCATATCAGATGGCAA+GGG | 0.679431 | tig0018106:+283899 | None:intergenic |
| AAGAGAGCTAGAGGTGCCGG+TGG | 0.680129 | tig0018106:-283652 | Msa1364230:CDS |
| AGATTGACATAGGAGTGGTG+GGG | 0.682750 | tig0018106:+286818 | None:intergenic |
| GGACATCCGAAAACATGGTG+GGG | 0.683730 | tig0018106:+285631 | None:intergenic |
| TTCAACATTTAAGAGAACCG+AGG | 0.691304 | tig0018106:-284688 | Msa1364230:CDS |
| TGGCTGTGATCCATTAGTGG+AGG | 0.701564 | tig0018106:+284603 | None:intergenic |
| AACTGTGCATGTGTTTAGTG+GGG | 0.711077 | tig0018106:+286727 | None:intergenic |
| ACTTGTAGAACACATCATTG+TGG | 0.726366 | tig0018106:-283304 | Msa1364230:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTTCATTTTATTTGTA+AGG | - | tig0018106:284132-284151 | Msa1364230:intron | 10.0% |
| !! | TAAGAAAAACTTAAATTATA+TGG | + | tig0018106:284812-284831 | None:intergenic | 10.0% |
| !!! | TTAAGTTTTTCTTATAAAAT+TGG | - | tig0018106:284818-284837 | Msa1364230:intron | 10.0% |
| !!! | TTTTTTATCTCTTTTAATTA+CGG | - | tig0018106:285459-285478 | Msa1364230:intron | 10.0% |
| !!! | TGATGAAGTTTTTTATATAT+TGG | - | tig0018106:282979-282998 | Msa1364230:three_prime_UTR | 15.0% |
| !! | AGAAAAAAGACAATTTAATT+TGG | + | tig0018106:283504-283523 | None:intergenic | 15.0% |
| !!! | TTCTCATTTTATTATGTTAT+TGG | - | tig0018106:284471-284490 | Msa1364230:CDS | 15.0% |
| !!! | TCTATTTCTTAAATTATTAC+TGG | - | tig0018106:284633-284652 | Msa1364230:CDS | 15.0% |
| !!! | TATTTACAAGTTTTTTTTGA+AGG | + | tig0018106:285585-285604 | None:intergenic | 15.0% |
| !!! | AATTATTTTGATTTCTTATG+AGG | - | tig0018106:285794-285813 | Msa1364230:intron | 15.0% |
| !!! | ATATTTGATTTGATATTGTA+TGG | - | tig0018106:286863-286882 | Msa1364230:five_prime_UTR | 15.0% |
| !!! | TATTTGATTTGATATTGTAT+GGG | - | tig0018106:286864-286883 | Msa1364230:five_prime_UTR | 15.0% |
| !!! | AAAAGTGTTAAACTTCAATT+GGG | - | tig0018106:283402-283421 | Msa1364230:CDS | 20.0% |
| !! | ATAGTTTCTTGTATGAATAA+TGG | - | tig0018106:283745-283764 | Msa1364230:intron | 20.0% |
| !! | TTATATTGATATTACCAAAC+TGG | + | tig0018106:283980-283999 | None:intergenic | 20.0% |
| !!! | TAATTCAAAATACGAACTTT+TGG | + | tig0018106:284042-284061 | None:intergenic | 20.0% |
| !!! | CATTTTATTTGTAAGGTAAA+TGG | - | tig0018106:284139-284158 | Msa1364230:intron | 20.0% |
| !! | TATATATATCTATGTTCTAG+TGG | - | tig0018106:285291-285310 | Msa1364230:intron | 20.0% |
| !! | TACAAATTACCTTATATTGT+TGG | + | tig0018106:285432-285451 | None:intergenic | 20.0% |
| !! | AAAACTTGTAAATAGATGTT+AGG | - | tig0018106:285591-285610 | Msa1364230:CDS | 20.0% |
| !! | TATACTTGTTTGAATTTGAA+TGG | - | tig0018106:286302-286321 | Msa1364230:intron | 20.0% |
| !!! | ATTTGATTTGATATTGTATG+GGG | - | tig0018106:286865-286884 | Msa1364230:five_prime_UTR | 20.0% |
| !! | GTCATGAAATTTCAAGTAAA+GGG | + | tig0018106:283247-283266 | None:intergenic | 25.0% |
| !! | TGTCATGAAATTTCAAGTAA+AGG | + | tig0018106:283248-283267 | None:intergenic | 25.0% |
| !!! | CAATTTTTAGCTTAAGATGA+TGG | - | tig0018106:283292-283311 | Msa1364230:three_prime_UTR | 25.0% |
| !!! | GAAAAGTGTTAAACTTCAAT+TGG | - | tig0018106:283401-283420 | Msa1364230:CDS | 25.0% |
| ! | TACAAATGAATGAAAACCTA+AGG | + | tig0018106:283436-283455 | None:intergenic | 25.0% |
| ! | AGACAATGAAATGTTTAAAC+AGG | + | tig0018106:283607-283626 | None:intergenic | 25.0% |
| !! | TTTCTTGTATGAATAATGGA+GGG | - | tig0018106:283749-283768 | Msa1364230:intron | 25.0% |
| ! | GAAAAGTCTCTATCATTAAT+TGG | + | tig0018106:283837-283856 | None:intergenic | 25.0% |
| !! | AGACTTTTCTTTTTATTACG+AGG | - | tig0018106:283848-283867 | Msa1364230:CDS | 25.0% |
| ! | CAATATAATGTTCCTTTATG+TGG | - | tig0018106:283992-284011 | Msa1364230:intron | 25.0% |
| ! | CTATATATTGGTAAAAGCTA+TGG | - | tig0018106:284782-284801 | Msa1364230:intron | 25.0% |
| ! | AAATTGGAATTTGTCTTAGA+TGG | - | tig0018106:284834-284853 | Msa1364230:intron | 25.0% |
| ! | TGCTGAATTACTTAATTTAG+TGG | - | tig0018106:285064-285083 | Msa1364230:intron | 25.0% |
| ! | AGTGCAAATACTAATCAAAT+GGG | + | tig0018106:285099-285118 | None:intergenic | 25.0% |
| !! | AGACACTTTTCTCAAAATTT+TGG | - | tig0018106:285337-285356 | Msa1364230:intron | 25.0% |
| !! | GACACTTTTCTCAAAATTTT+GGG | - | tig0018106:285338-285357 | Msa1364230:intron | 25.0% |
| ! | TAATATCAATATCAACATGC+TGG | + | tig0018106:285509-285528 | None:intergenic | 25.0% |
| !! | TCAATTTTCAGTCATAACTA+TGG | + | tig0018106:285842-285861 | None:intergenic | 25.0% |
| !! | TGCTTTGAATTCACATATAT+GGG | + | tig0018106:285986-286005 | None:intergenic | 25.0% |
| ! | GAATTTGAATGGAAATATGT+CGG | - | tig0018106:286313-286332 | Msa1364230:intron | 25.0% |
| AAAATAAAAGAGAGACACCT+TGG | + | tig0018106:283181-283200 | None:intergenic | 30.0% | |
| CTGTTCTGTTTGTATATTCT+TGG | - | tig0018106:283341-283360 | Msa1364230:CDS | 30.0% | |
| TATAGTAAGCTTTCCATTTC+AGG | - | tig0018106:283375-283394 | Msa1364230:CDS | 30.0% | |
| ACACATGGAATAAACTCAAT+TGG | + | tig0018106:283467-283486 | None:intergenic | 30.0% | |
| GTATATAAGCAAAAGACACA+TGG | + | tig0018106:283482-283501 | None:intergenic | 30.0% | |
| !!! | TACCTTTTTTGCACCAATAA+TGG | - | tig0018106:283532-283551 | Msa1364230:CDS | 30.0% |
| TTCCATTATTGGTGCAAAAA+AGG | + | tig0018106:283537-283556 | None:intergenic | 30.0% | |
| ! | CCTTCTCTTATTTCCATTAT+TGG | + | tig0018106:283548-283567 | None:intergenic | 30.0% |
| ! | CCAATAATGGAAATAAGAGA+AGG | - | tig0018106:283545-283564 | Msa1364230:CDS | 30.0% |
| GTTTCTTGTATGAATAATGG+AGG | - | tig0018106:283748-283767 | Msa1364230:intron | 30.0% | |
| AATTGGAAGAACTTTCATAG+AGG | + | tig0018106:283820-283839 | None:intergenic | 30.0% | |
| TTATTACGAGGAATCAAACT+CGG | - | tig0018106:283860-283879 | Msa1364230:CDS | 30.0% | |
| TATTTCTTTCTTGTCCAGTT+TGG | - | tig0018106:283963-283982 | Msa1364230:CDS | 30.0% | |
| AACATAAGCATACCACATAA+AGG | + | tig0018106:284007-284026 | None:intergenic | 30.0% | |
| ! | GAGTTTTCAATTTCAAGAAC+AGG | - | tig0018106:284355-284374 | Msa1364230:intron | 30.0% |
| TACTACTGCAGTTTCTTAAT+AGG | + | tig0018106:284508-284527 | None:intergenic | 30.0% | |
| !! | ACACCTTTAATTTGAAGTGT+CGG | + | tig0018106:284549-284568 | None:intergenic | 30.0% |
| !! | TATAAATTGACTCGCTTATG+AGG | + | tig0018106:284922-284941 | None:intergenic | 30.0% |
| ! | ATCGTTGATGGGAAAATAAA+TGG | - | tig0018106:284964-284983 | Msa1364230:intron | 30.0% |
| TTGATGGGAAAATAAATGGT+TGG | - | tig0018106:284968-284987 | Msa1364230:intron | 30.0% | |
| TGCAAATACTAATCAAATGG+GGG | + | tig0018106:285097-285116 | None:intergenic | 30.0% | |
| GTGCAAATACTAATCAAATG+GGG | + | tig0018106:285098-285117 | None:intergenic | 30.0% | |
| CAGTGCAAATACTAATCAAA+TGG | + | tig0018106:285100-285119 | None:intergenic | 30.0% | |
| TCATCGAATCATCATCTATT+GGG | - | tig0018106:285208-285227 | Msa1364230:intron | 30.0% | |
| TATATCTGCTTACAAGTGAT+TGG | + | tig0018106:285275-285294 | None:intergenic | 30.0% | |
| TATATCTATGTTCTAGTGGA+TGG | - | tig0018106:285295-285314 | Msa1364230:intron | 30.0% | |
| !!! | TTCTCAAAATTTTGGGTTTC+AGG | - | tig0018106:285345-285364 | Msa1364230:intron | 30.0% |
| TTCATATGGCCAACAATATA+AGG | - | tig0018106:285420-285439 | Msa1364230:intron | 30.0% | |
| CCATTTAGAGGAACAAATTA+AGG | + | tig0018106:285650-285669 | None:intergenic | 30.0% | |
| !! | CCTTAATTTGTTCCTCTAAA+TGG | - | tig0018106:285647-285666 | Msa1364230:CDS | 30.0% |
| ATGATTTATGAAAGCCGTAA+AGG | + | tig0018106:285710-285729 | None:intergenic | 30.0% | |
| ! | CTGCTTTGAATTCACATATA+TGG | + | tig0018106:285987-286006 | None:intergenic | 30.0% |
| AGCACATAACAAACTCATAA+AGG | - | tig0018106:286051-286070 | Msa1364230:intron | 30.0% | |
| TCTTTAATGCATGTACATGT+CGG | + | tig0018106:286187-286206 | None:intergenic | 30.0% | |
| !! | GCTTTTTAGCATTGAGAAAA+CGG | + | tig0018106:286229-286248 | None:intergenic | 30.0% |
| CAAATTCAAACAAGTATAGC+TGG | + | tig0018106:286300-286319 | None:intergenic | 30.0% | |
| ACATAAGTAAATATGAGCCA+AGG | + | tig0018106:286661-286680 | None:intergenic | 30.0% | |
| TATTGTGTAGCCTATTGTTT+AGG | - | tig0018106:286724-286743 | Msa1364230:five_prime_UTR | 30.0% | |
| !!! | GTGTTTTTTGCCTAAACAAT+AGG | + | tig0018106:286737-286756 | None:intergenic | 30.0% |
| ! | TGCTTTTCTAAGTTTAATGC+TGG | - | tig0018106:286780-286799 | Msa1364230:five_prime_UTR | 30.0% |
| ACAACAAATAAAGTCACACT+AGG | + | tig0018106:286808-286827 | None:intergenic | 30.0% | |
| ATTCAAAAAACTCGGTTCTT+CGG | + | tig0018106:286836-286855 | None:intergenic | 30.0% | |
| TGTGTCGAATTCAAAAAACT+CGG | + | tig0018106:286844-286863 | None:intergenic | 30.0% | |
| GATGAGTCATAGATTGACAT+AGG | + | tig0018106:283050-283069 | None:intergenic | 35.0% | |
| AAACTGTGCATGTGTTTAGT+GGG | + | tig0018106:283132-283151 | None:intergenic | 35.0% | |
| CAATTGGGAAAGAATTCCTT+AGG | - | tig0018106:283417-283436 | Msa1364230:CDS | 35.0% | |
| TGGATTAACATTTCAACCCT+TGG | + | tig0018106:283784-283803 | None:intergenic | 35.0% | |
| AGGGTTGAAATGTTAATCCA+TGG | - | tig0018106:283784-283803 | Msa1364230:intron | 35.0% | |
| GAAGAACTTTCATAGAGGAT+TGG | + | tig0018106:283815-283834 | None:intergenic | 35.0% | |
| TAAGTGATTGTTGTAAACCC+GGG | + | tig0018106:283889-283908 | None:intergenic | 35.0% | |
| GTAAGTGATTGTTGTAAACC+CGG | + | tig0018106:283890-283909 | None:intergenic | 35.0% | |
| AAGATACTGCAACGATAATC+TGG | - | tig0018106:284061-284080 | Msa1364230:intron | 35.0% | |
| !!! | ATCTAGCTACAGCTTTTTCA+TGG | + | tig0018106:284094-284113 | None:intergenic | 35.0% |
| AAAAAGCTGTAGCTAGATCT+AGG | - | tig0018106:284096-284115 | Msa1364230:intron | 35.0% | |
| ! | TTTTGGACATGGATGTTTGT+TGG | + | tig0018106:284280-284299 | None:intergenic | 35.0% |
| !!! | CACTTTGAAGCTCAAACTTT+TGG | + | tig0018106:284297-284316 | None:intergenic | 35.0% |
| CAAAAGTTTGAGCTTCAAAG+TGG | - | tig0018106:284295-284314 | Msa1364230:intron | 35.0% | |
| !! | CTTCAAATTAAAGGTGTCTC+CGG | - | tig0018106:284552-284571 | Msa1364230:intron | 35.0% |
| TCGAATGTAACTATGTGAGT+CGG | + | tig0018106:284608-284627 | None:intergenic | 35.0% | |
| !! | CTGTTCTTCATAGCTTTTTC+TGG | - | tig0018106:284686-284705 | Msa1364230:CDS | 35.0% |
| ATTATGTAAACCTACCTCCT+TGG | - | tig0018106:284749-284768 | Msa1364230:intron | 35.0% | |
| AGTTATGAAGTAACGTGTCA+AGG | + | tig0018106:284881-284900 | None:intergenic | 35.0% | |
| CAAGATATCTCATCGTTGAT+GGG | - | tig0018106:284953-284972 | Msa1364230:intron | 35.0% | |
| GATTAGTATTTGCACTGTGT+TGG | - | tig0018106:285103-285122 | Msa1364230:intron | 35.0% | |
| TTCAACATTTAAGAGAACCG+AGG | - | tig0018106:285167-285186 | Msa1364230:intron | 35.0% | |
| CTCATCGAATCATCATCTAT+TGG | - | tig0018106:285207-285226 | Msa1364230:intron | 35.0% | |
| TGATTGAACAGTCCATTTAG+AGG | + | tig0018106:285662-285681 | None:intergenic | 35.0% | |
| ! | TTGCATATATTTGAGACCAG+AGG | - | tig0018106:285753-285772 | Msa1364230:intron | 35.0% |
| ! | TGCATATATTTGAGACCAGA+GGG | - | tig0018106:285754-285773 | Msa1364230:intron | 35.0% |
| AACAATATTGTTAGTGCGGT+TGG | + | tig0018106:286141-286160 | None:intergenic | 35.0% | |
| GCACAACAATATTGTTAGTG+CGG | + | tig0018106:286145-286164 | None:intergenic | 35.0% | |
| CTTTAATGCATGTACATGTC+GGG | + | tig0018106:286186-286205 | None:intergenic | 35.0% | |
| !! | GAAACATTTTGGTCATGGTT+TGG | + | tig0018106:286275-286294 | None:intergenic | 35.0% |
| ! | TATAGCTGGTGGAAACATTT+TGG | + | tig0018106:286286-286305 | None:intergenic | 35.0% |
| ATTCAAACAAGTATAGCTGG+TGG | + | tig0018106:286297-286316 | None:intergenic | 35.0% | |
| ! | TTCAACCTGATCATGCATTT+TGG | + | tig0018106:286342-286361 | None:intergenic | 35.0% |
| TACAAAGCTGACAAGAATGT+TGG | - | tig0018106:286491-286510 | Msa1364230:intron | 35.0% | |
| ACTTGTAGAACACATCATTG+TGG | - | tig0018106:286551-286570 | Msa1364230:intron | 35.0% | |
| TGGAGAACACAATCAAATAG+TGG | + | tig0018106:286616-286635 | None:intergenic | 35.0% | |
| TAGATTGACATAGGAGTGGT+GGG | + | tig0018106:283041-283060 | None:intergenic | 40.0% | |
| ATAGATTGACATAGGAGTGG+TGG | + | tig0018106:283042-283061 | None:intergenic | 40.0% | |
| GTCATAGATTGACATAGGAG+TGG | + | tig0018106:283045-283064 | None:intergenic | 40.0% | |
| AACTGTGCATGTGTTTAGTG+GGG | + | tig0018106:283131-283150 | None:intergenic | 40.0% | |
| GAAACTGTGCATGTGTTTAG+TGG | + | tig0018106:283133-283152 | None:intergenic | 40.0% | |
| CTAAATCCACCCAATTTCCA+AGG | - | tig0018106:283161-283180 | Msa1364230:three_prime_UTR | 40.0% | |
| AGAGAGACACCTTGGAAATT+GGG | + | tig0018106:283173-283192 | None:intergenic | 40.0% | |
| AAGAGAGACACCTTGGAAAT+TGG | + | tig0018106:283174-283193 | None:intergenic | 40.0% | |
| AGTAAGCTTTCCATTTCAGG+TGG | - | tig0018106:283378-283397 | Msa1364230:CDS | 40.0% | |
| ! | GTAAGCTTTCCATTTCAGGT+GGG | - | tig0018106:283379-283398 | Msa1364230:CDS | 40.0% |
| ! | AACACTTTTCCCACCTGAAA+TGG | + | tig0018106:283391-283410 | None:intergenic | 40.0% |
| GAACTTTCATAGAGGATTGG+AGG | + | tig0018106:283812-283831 | None:intergenic | 40.0% | |
| AAGTGATTGTTGTAAACCCG+GGG | + | tig0018106:283888-283907 | None:intergenic | 40.0% | |
| !! | ATGATGGACATCCGAAAACA+TGG | + | tig0018106:284232-284251 | None:intergenic | 40.0% |
| ! | ATGTTTTCGGATGTCCATCA+TGG | - | tig0018106:284231-284250 | Msa1364230:intron | 40.0% |
| ! | TGTTTTCGGATGTCCATCAT+GGG | - | tig0018106:284232-284251 | Msa1364230:intron | 40.0% |
| ! | GAAGCTCAAACTTTTGGACA+TGG | + | tig0018106:284291-284310 | None:intergenic | 40.0% |
| TTACTGTTGTGGCATTCTTG+TGG | + | tig0018106:284329-284348 | None:intergenic | 40.0% | |
| AACTCAGTGCTTTACTGTTG+TGG | + | tig0018106:284340-284359 | None:intergenic | 40.0% | |
| TCATCTTCAACTCAATCGAC+TGG | - | tig0018106:284380-284399 | Msa1364230:intron | 40.0% | |
| AAAACACCAGTTGACAAGCA+CGG | + | tig0018106:284453-284472 | None:intergenic | 40.0% | |
| ! | GCACCGACACTTCAAATTAA+AGG | - | tig0018106:284543-284562 | Msa1364230:intron | 40.0% |
| AGACATCCATACACAGACAA+CGG | + | tig0018106:284668-284687 | None:intergenic | 40.0% | |
| TATATAGCCAGTGCTAACCA+AGG | + | tig0018106:284769-284788 | None:intergenic | 40.0% | |
| !! | GGTTAGCACTGGCTATATAT+TGG | - | tig0018106:284770-284789 | Msa1364230:intron | 40.0% |
| GCAAGATATCTCATCGTTGA+TGG | - | tig0018106:284952-284971 | Msa1364230:intron | 40.0% | |
| ACACATACACAGCAGACAAT+GGG | + | tig0018106:285006-285025 | None:intergenic | 40.0% | |
| TACACATACACAGCAGACAA+TGG | + | tig0018106:285007-285026 | None:intergenic | 40.0% | |
| TTTGCACTGTGTTGGATACT+AGG | - | tig0018106:285111-285130 | Msa1364230:intron | 40.0% | |
| GTAGAAGAACAATGCTGGAA+AGG | + | tig0018106:285144-285163 | None:intergenic | 40.0% | |
| TTCCAGCATTGTTCTTCTAC+TGG | - | tig0018106:285144-285163 | Msa1364230:intron | 40.0% | |
| AACCAGTAGAAGAACAATGC+TGG | + | tig0018106:285149-285168 | None:intergenic | 40.0% | |
| AGAACCGAGGAGAACAATAT+GGG | - | tig0018106:285180-285199 | Msa1364230:intron | 40.0% | |
| ACATCCCATATTGTTCTCCT+CGG | + | tig0018106:285187-285206 | None:intergenic | 40.0% | |
| ! | TGTTCTAGTGGATGGAAGTA+TGG | - | tig0018106:285303-285322 | Msa1364230:intron | 40.0% |
| TCAATATCAACATGCTGGAG+TGG | + | tig0018106:285504-285523 | None:intergenic | 40.0% | |
| TGTCGATGTCTAGTCCTTTA+CGG | - | tig0018106:285693-285712 | Msa1364230:five_prime_UTR | 40.0% | |
| ! | TGACACTTGTTGCTAGTTAC+AGG | - | tig0018106:285859-285878 | Msa1364230:intron | 40.0% |
| AAATTCTGACCAGCTTCTTC+AGG | - | tig0018106:285901-285920 | Msa1364230:intron | 40.0% | |
| AATTCTGACCAGCTTCTTCA+GGG | - | tig0018106:285902-285921 | Msa1364230:intron | 40.0% | |
| TATCAGATGGCAAGGGAATT+CGG | + | tig0018106:285952-285971 | None:intergenic | 40.0% | |
| AATTCCCTTGCCATCTGATA+TGG | - | tig0018106:285952-285971 | Msa1364230:intron | 40.0% | |
| AGCAGTACCATGCTATTATG+AGG | - | tig0018106:286002-286021 | Msa1364230:intron | 40.0% | |
| CATGCATTAAAGAGAGCTAG+AGG | - | tig0018106:286194-286213 | Msa1364230:intron | 40.0% | |
| ! | GCGAATCAAGCTTTGATTCT+TGG | + | tig0018106:286253-286272 | None:intergenic | 40.0% |
| !! | TGGTGGAAACATTTTGGTCA+TGG | + | tig0018106:286280-286299 | None:intergenic | 40.0% |
| GGAATCCAAAATGCATGATC+AGG | - | tig0018106:286334-286353 | Msa1364230:intron | 40.0% | |
| GATGCTTCTGATGTCACATA+CGG | - | tig0018106:286374-286393 | Msa1364230:intron | 40.0% | |
| ATGTCACATACGGATCTCAT+AGG | - | tig0018106:286384-286403 | Msa1364230:intron | 40.0% | |
| TGAAATGTTTCAGCAGCAAC+AGG | - | tig0018106:286409-286428 | Msa1364230:intron | 40.0% | |
| TTCTACAAGTCTCTCACATG+CGG | + | tig0018106:286541-286560 | None:intergenic | 40.0% | |
| TGTAGAACACATCATTGTGG+TGG | - | tig0018106:286554-286573 | Msa1364230:intron | 40.0% | |
| TGTTCTCCAATCTCTACCAT+TGG | - | tig0018106:286627-286646 | Msa1364230:intron | 40.0% | |
| GTTCTCCAATCTCTACCATT+GGG | - | tig0018106:286628-286647 | Msa1364230:intron | 40.0% | |
| AGATTGACATAGGAGTGGTG+GGG | + | tig0018106:283040-283059 | None:intergenic | 45.0% | |
| !! | ATGGAGGGTAAGTTGATCCA+AGG | - | tig0018106:283764-283783 | Msa1364230:intron | 45.0% |
| !! | TGGAGGGTAAGTTGATCCAA+GGG | - | tig0018106:283765-283784 | Msa1364230:intron | 45.0% |
| ATAGAGGATTGGAGGAACCA+TGG | + | tig0018106:283804-283823 | None:intergenic | 45.0% | |
| CAATCACTTACGCTAGACCA+CGG | - | tig0018106:283899-283918 | Msa1364230:CDS | 45.0% | |
| TACTGCAACGATAATCTGGC+AGG | - | tig0018106:284065-284084 | Msa1364230:intron | 45.0% | |
| ! | TCAACACCCCACCATGTTTT+CGG | - | tig0018106:284218-284237 | Msa1364230:intron | 45.0% |
| TGGACATCCGAAAACATGGT+GGG | + | tig0018106:284228-284247 | None:intergenic | 45.0% | |
| ATGGACATCCGAAAACATGG+TGG | + | tig0018106:284229-284248 | None:intergenic | 45.0% | |
| ! | GTTTTCGGATGTCCATCATG+GGG | - | tig0018106:284233-284252 | Msa1364230:intron | 45.0% |
| TCAGAAGATCTTCCCCATGA+TGG | + | tig0018106:284248-284267 | None:intergenic | 45.0% | |
| CATACACAGACAACGGACAT+TGG | + | tig0018106:284661-284680 | None:intergenic | 45.0% | |
| CAATGTCCGTTGTCTGTGTA+TGG | - | tig0018106:284659-284678 | Msa1364230:CDS | 45.0% | |
| ATACTAATCAAATGGGGGCG+TGG | + | tig0018106:285092-285111 | None:intergenic | 45.0% | |
| GAGAACCGAGGAGAACAATA+TGG | - | tig0018106:285179-285198 | Msa1364230:intron | 45.0% | |
| ATCCATTAGTGGAGGATGGA+CGG | + | tig0018106:285247-285266 | None:intergenic | 45.0% | |
| TGTGATCCATTAGTGGAGGA+TGG | + | tig0018106:285251-285270 | None:intergenic | 45.0% | |
| ! | GATTGGCTGTGATCCATTAG+TGG | + | tig0018106:285258-285277 | None:intergenic | 45.0% |
| TATGCTGATCCAGGCTACAA+TGG | - | tig0018106:285385-285404 | Msa1364230:intron | 45.0% | |
| GGCCTACTTTCTGCTTCATA+TGG | - | tig0018106:285406-285425 | Msa1364230:intron | 45.0% | |
| GGCCATATGAAGCAGAAAGT+AGG | + | tig0018106:285411-285430 | None:intergenic | 45.0% | |
| CAACATGCTGGAGTGGAATA+CGG | + | tig0018106:285497-285516 | None:intergenic | 45.0% | |
| TTAGGAGTAGATGTTGCAGC+TGG | - | tig0018106:285609-285628 | Msa1364230:CDS | 45.0% | |
| CAGAAGCAGTTTCCATTAGC+TGG | + | tig0018106:285928-285947 | None:intergenic | 45.0% | |
| GTCTTCGCCTCATAATAGCA+TGG | + | tig0018106:286012-286031 | None:intergenic | 45.0% | |
| TTATGAGGCGAAGACAGTGT+CGG | - | tig0018106:286017-286036 | Msa1364230:intron | 45.0% | |
| ! | TTAAAGAGAGCTAGAGGTGC+CGG | - | tig0018106:286200-286219 | Msa1364230:intron | 45.0% |
| AGCAACAGGAGTTAGAGTTC+AGG | - | tig0018106:286423-286442 | Msa1364230:intron | 45.0% | |
| AGTTACCCTTCTTCTCAGAC+TGG | - | tig0018106:286452-286471 | Msa1364230:intron | 45.0% | |
| TCCTTCCAGTCTGAGAAGAA+GGG | + | tig0018106:286460-286479 | None:intergenic | 45.0% | |
| TTCCTTCCAGTCTGAGAAGA+AGG | + | tig0018106:286461-286480 | None:intergenic | 45.0% | |
| GACTTCCCAATGGTAGAGAT+TGG | + | tig0018106:286636-286655 | None:intergenic | 45.0% | |
| TACCATTGGGAAGTCATCCT+TGG | - | tig0018106:286641-286660 | Msa1364230:intron | 45.0% | |
| TGTGACTCTATCGTAGTCGT+TGG | - | tig0018106:286900-286919 | Msa1364230:five_prime_UTR | 45.0% | |
| CGTAGTCGTTGGATTGAGAT+TGG | - | tig0018106:286911-286930 | Msa1364230:five_prime_UTR | 45.0% | |
| TCGTTGGATTGAGATTGGCA+GGG | - | tig0018106:286916-286935 | Msa1364230:five_prime_UTR | 45.0% | |
| !!! | ATAATTCATTAAATTTTAAA+AGG | + | tig0018106:285548-285567 | None:intergenic | 5.0% |
| GAGACACCTTGGAAATTGGG+TGG | + | tig0018106:283170-283189 | None:intergenic | 50.0% | |
| GGACATCCGAAAACATGGTG+GGG | + | tig0018106:284227-284246 | None:intergenic | 50.0% | |
| ! | TCGACTGGCTCATCACAATC+AGG | - | tig0018106:284395-284414 | Msa1364230:intron | 50.0% |
| GTGATTCCGTGCTTGTCAAC+TGG | - | tig0018106:284444-284463 | Msa1364230:CDS | 50.0% | |
| CACTAACACGTGTCTCACAC+CGG | + | tig0018106:284574-284593 | None:intergenic | 50.0% | |
| AGACACGTGTTAGTGTCCGA+AGG | - | tig0018106:284579-284598 | Msa1364230:intron | 50.0% | |
| ! | CTATGTGAGTCGGTGTCCTT+CGG | + | tig0018106:284598-284617 | None:intergenic | 50.0% |
| ATAGCCAGTGCTAACCAAGG+AGG | + | tig0018106:284766-284785 | None:intergenic | 50.0% | |
| TGGCTGTGATCCATTAGTGG+AGG | + | tig0018106:285255-285274 | None:intergenic | 50.0% | |
| TGTAGCCTGGATCAGCATAG+TGG | + | tig0018106:285384-285403 | None:intergenic | 50.0% | |
| GAAAGTAGGCCATTGTAGCC+TGG | + | tig0018106:285397-285416 | None:intergenic | 50.0% | |
| CTAGACATCGACAGAGAGCA+CGG | + | tig0018106:285686-285705 | None:intergenic | 50.0% | |
| AGCTGAACTAGTAGTCCCTC+TGG | + | tig0018106:285772-285791 | None:intergenic | 50.0% | |
| TCCCTTGCCATCTGATATGG+CGG | - | tig0018106:285955-285974 | Msa1364230:intron | 50.0% | |
| TCCGCCATATCAGATGGCAA+GGG | + | tig0018106:285959-285978 | None:intergenic | 50.0% | |
| TTCCGCCATATCAGATGGCA+AGG | + | tig0018106:285960-285979 | None:intergenic | 50.0% | |
| GGTTCTTCCGCCATATCAGA+TGG | + | tig0018106:285965-285984 | None:intergenic | 50.0% | |
| TATGAGGCGAAGACAGTGTC+GGG | - | tig0018106:286018-286037 | Msa1364230:intron | 50.0% | |
| TGTCGGGACTCGTGAAGATA+TGG | + | tig0018106:286170-286189 | None:intergenic | 50.0% | |
| ! | AGCATTGAGAAAACGGCCAC+CGG | + | tig0018106:286222-286241 | None:intergenic | 50.0% |
| ACCCTTCTTCTCAGACTGGA+AGG | - | tig0018106:286456-286475 | Msa1364230:intron | 50.0% | |
| ACAAGTCTCTCACATGCGGA+CGG | + | tig0018106:286537-286556 | None:intergenic | 50.0% | |
| AGCCAAGGATGACTTCCCAA+TGG | + | tig0018106:286646-286665 | None:intergenic | 50.0% | |
| GTCGTTGGATTGAGATTGGC+AGG | - | tig0018106:286915-286934 | Msa1364230:five_prime_UTR | 50.0% | |
| TGGATTGAGATTGGCAGGGA+CGG | - | tig0018106:286920-286939 | Msa1364230:five_prime_UTR | 50.0% | |
| !! | AGGAATCAAACTCGGTGCCC+CGG | - | tig0018106:283868-283887 | Msa1364230:CDS | 55.0% |
| TCACTTACGCTAGACCACGG+TGG | - | tig0018106:283902-283921 | Msa1364230:CDS | 55.0% | |
| CTAGACCACGGTGGTACTCA+CGG | - | tig0018106:283911-283930 | Msa1364230:CDS | 55.0% | |
| TAGACCACGGTGGTACTCAC+GGG | - | tig0018106:283912-283931 | Msa1364230:CDS | 55.0% | |
| AAATCCCGTGAGTACCACCG+TGG | + | tig0018106:283919-283938 | None:intergenic | 55.0% | |
| CCAGTGCTAACCAAGGAGGT+AGG | + | tig0018106:284762-284781 | None:intergenic | 55.0% | |
| CCTACCTCCTTGGTTAGCAC+TGG | - | tig0018106:284759-284778 | Msa1364230:intron | 55.0% | |
| GGAGGATGGACGGTGAGATT+TGG | + | tig0018106:285237-285256 | None:intergenic | 55.0% | |
| CACCGTCCATCCTCCACTAA+TGG | - | tig0018106:285242-285261 | Msa1364230:intron | 55.0% | |
| GCACTCCACTATGCTGATCC+AGG | - | tig0018106:285376-285395 | Msa1364230:intron | 55.0% | |
| TTAGCTGGCCCTGAAGAAGC+TGG | + | tig0018106:285913-285932 | None:intergenic | 55.0% | |
| GCTTCTTCAGGGCCAGCTAA+TGG | - | tig0018106:285913-285932 | Msa1364230:intron | 55.0% | |
| CTCACATGCGGACGGATAGT+CGG | + | tig0018106:286529-286548 | None:intergenic | 55.0% | |
| !! | GGAATCAAACTCGGTGCCCC+GGG | - | tig0018106:283869-283888 | Msa1364230:CDS | 60.0% |
| !! | AAGAGAGCTAGAGGTGCCGG+TGG | - | tig0018106:286203-286222 | Msa1364230:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0018106 | gene | 282912 | 286965 | 282912 | ID=Msa1364230;Name=Msa1364230 |
| tig0018106 | mRNA | 282912 | 286965 | 282912 | ID=Msa1364230-mRNA-1;Parent=Msa1364230;Name=Msa1364230-mRNA-1;_AED=0.23;_eAED=0.23;_QI=302|1|1|1|0.8|0.66|6|418|345 |
| tig0018106 | exon | 282912 | 283710 | 282912 | ID=Msa1364230-mRNA-1:exon:13914;Parent=Msa1364230-mRNA-1 |
| tig0018106 | exon | 283796 | 283996 | 283796 | ID=Msa1364230-mRNA-1:exon:13913;Parent=Msa1364230-mRNA-1 |
| tig0018106 | exon | 284436 | 284510 | 284436 | ID=Msa1364230-mRNA-1:exon:13912;Parent=Msa1364230-mRNA-1 |
| tig0018106 | exon | 284596 | 284744 | 284596 | ID=Msa1364230-mRNA-1:exon:13911;Parent=Msa1364230-mRNA-1 |
| tig0018106 | exon | 285461 | 285723 | 285461 | ID=Msa1364230-mRNA-1:exon:13910;Parent=Msa1364230-mRNA-1 |
| tig0018106 | exon | 286695 | 286965 | 286695 | ID=Msa1364230-mRNA-1:exon:13909;Parent=Msa1364230-mRNA-1 |
| tig0018106 | five_prime_UTR | 286695 | 286965 | 286695 | ID=Msa1364230-mRNA-1:five_prime_utr;Parent=Msa1364230-mRNA-1 |
| tig0018106 | five_prime_UTR | 285693 | 285723 | 285693 | ID=Msa1364230-mRNA-1:five_prime_utr;Parent=Msa1364230-mRNA-1 |
| tig0018106 | CDS | 285461 | 285692 | 285461 | ID=Msa1364230-mRNA-1:cds;Parent=Msa1364230-mRNA-1 |
| tig0018106 | CDS | 284596 | 284744 | 284596 | ID=Msa1364230-mRNA-1:cds;Parent=Msa1364230-mRNA-1 |
| tig0018106 | CDS | 284436 | 284510 | 284436 | ID=Msa1364230-mRNA-1:cds;Parent=Msa1364230-mRNA-1 |
| tig0018106 | CDS | 283796 | 283996 | 283796 | ID=Msa1364230-mRNA-1:cds;Parent=Msa1364230-mRNA-1 |
| tig0018106 | CDS | 283330 | 283710 | 283330 | ID=Msa1364230-mRNA-1:cds;Parent=Msa1364230-mRNA-1 |
| tig0018106 | three_prime_UTR | 282912 | 283329 | 282912 | ID=Msa1364230-mRNA-1:three_prime_utr;Parent=Msa1364230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
