AlfalfaGEDB | Msa1364230

M. sativa cultivar zhongmu-4 / Msa1364230

KEGG: K08064
GO: GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009628 GO:0009637 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009785 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010035 GO:0010154 GO:0010262 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0030522 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0045892 GO:0045934 GO:0048316 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071214 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071478 GO:0071482 GO:0071483 GO:0071495 GO:0080090 GO:0097305 GO:0097306 GO:0104004 GO:0140110 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
PFAM: PF02045.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1364230	XP_024633082.1	95.652	345	15	0	1	345	1	345	0.0	665

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1364230	sp\|Q9LNP6\|NFYA8_ARATH	38.310	355	162	13	10	345	12	328	6.61e-53	180

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1364230	A0A396JG16	95.652	345	15	0	1	345	1	345	0.0	665

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TFs/TRs:

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Gene ID	Type	Classification
Msa1364230	TF	NF-YA

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1364230	MtrunA17_Chr2g0329811	95.652	345	15	0	1	345	1	345	0.0	665
Msa1364230	MtrunA17_Chr8g0343451	51.471	340	120	12	23	345	7	318	1.91e-85	261
Msa1364230	MtrunA17_Chr2g0300261	55.882	136	48	4	121	253	19	145	3.45e-40	141
Msa1364230	MtrunA17_Chr2g0292411	50.435	115	53	1	168	282	95	205	3.88e-33	122
Msa1364230	MtrunA17_Chr3g0103391	50.376	133	51	3	114	246	112	229	4.62e-31	119
Msa1364230	MtrunA17_Chr8g0352251	56.311	103	40	1	144	246	117	214	9.48e-31	118
Msa1364230	MtrunA17_Chr1g0177091	41.844	141	67	4	108	245	95	223	3.31e-24	101
Msa1364230	MtrunA17_Chr7g0267581	51.000	100	40	3	147	246	136	226	3.91e-24	100

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1364230	AT1G17590.3	38.310	355	162	13	10	345	12	328	6.72e-54	180
Msa1364230	AT1G17590.2	38.310	355	162	13	10	345	12	328	6.72e-54	180
Msa1364230	AT1G17590.4	38.310	355	162	13	10	345	12	328	6.72e-54	180
Msa1364230	AT1G17590.1	38.310	355	162	13	10	345	12	328	6.72e-54	180
Msa1364230	AT1G72830.1	35.813	363	188	13	2	345	4	340	2.26e-49	169
Msa1364230	AT1G72830.2	35.714	364	188	14	2	345	4	341	1.22e-47	164
Msa1364230	AT1G54160.1	38.281	256	107	8	22	250	11	242	3.75e-40	144
Msa1364230	AT3G14020.2	37.690	329	134	16	20	318	13	300	1.27e-39	142
Msa1364230	AT3G14020.1	37.690	329	134	16	20	318	13	300	1.27e-39	142
Msa1364230	AT1G72830.3	34.535	333	153	11	2	318	4	287	1.11e-37	137

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Find 113 sgRNAs with CRISPR-Local

Find 252 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTGTGCATGTGTTTAGT+GGG	0.565424	tig0018106:+286726	None:intergenic
AAATTCTGACCAGCTTCTTC+AGG	0.334629	tig0018106:-283954	Msa1364230:CDS
AACCAGTAGAAGAACAATGC+TGG	0.515161	tig0018106:+284709	None:intergenic
AACTCAGTGCTTTACTGTTG+TGG	0.539967	tig0018106:+285518	None:intergenic
AACTGTGCATGTGTTTAGTG+GGG	0.711077	tig0018106:+286727	None:intergenic
AAGAGAGACACCTTGGAAAT+TGG	0.211241	tig0018106:+286684	None:intergenic
AAGAGAGCTAGAGGTGCCGG+TGG	0.680129	tig0018106:-283652	Msa1364230:CDS
AATTCCCTTGCCATCTGATA+TGG	0.360890	tig0018106:-283903	Msa1364230:CDS
AATTCTGACCAGCTTCTTCA+GGG	0.474643	tig0018106:-283953	Msa1364230:CDS
ACAACAAATAAAGTCACACT+AGG	0.653661	tig0018106:+283050	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATAAAAGAGAGACACCT+TGG	+	tig0018106:283181-283200	None:intergenic	30.0%
CTGTTCTGTTTGTATATTCT+TGG	-	tig0018106:283341-283360	Msa1364230:CDS	30.0%
TATAGTAAGCTTTCCATTTC+AGG	-	tig0018106:283375-283394	Msa1364230:CDS	30.0%
ACACATGGAATAAACTCAAT+TGG	+	tig0018106:283467-283486	None:intergenic	30.0%
GTATATAAGCAAAAGACACA+TGG	+	tig0018106:283482-283501	None:intergenic	30.0%
TTCCATTATTGGTGCAAAAA+AGG	+	tig0018106:283537-283556	None:intergenic	30.0%
GTTTCTTGTATGAATAATGG+AGG	-	tig0018106:283748-283767	Msa1364230:intron	30.0%
AATTGGAAGAACTTTCATAG+AGG	+	tig0018106:283820-283839	None:intergenic	30.0%
TTATTACGAGGAATCAAACT+CGG	-	tig0018106:283860-283879	Msa1364230:CDS	30.0%
TATTTCTTTCTTGTCCAGTT+TGG	-	tig0018106:283963-283982	Msa1364230:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0018106	gene	282912	286965	282912	ID=Msa1364230;Name=Msa1364230
tig0018106	mRNA	282912	286965	282912	ID=Msa1364230-mRNA-1;Parent=Msa1364230;Name=Msa1364230-mRNA-1;_AED=0.23;_eAED=0.23;_QI=302\|1\|1\|1\|0.8\|0.66\|6\|418\|345
tig0018106	exon	282912	283710	282912	ID=Msa1364230-mRNA-1:exon:13914;Parent=Msa1364230-mRNA-1
tig0018106	exon	283796	283996	283796	ID=Msa1364230-mRNA-1:exon:13913;Parent=Msa1364230-mRNA-1
tig0018106	exon	284436	284510	284436	ID=Msa1364230-mRNA-1:exon:13912;Parent=Msa1364230-mRNA-1
tig0018106	exon	284596	284744	284596	ID=Msa1364230-mRNA-1:exon:13911;Parent=Msa1364230-mRNA-1
tig0018106	exon	285461	285723	285461	ID=Msa1364230-mRNA-1:exon:13910;Parent=Msa1364230-mRNA-1
tig0018106	exon	286695	286965	286695	ID=Msa1364230-mRNA-1:exon:13909;Parent=Msa1364230-mRNA-1
tig0018106	five_prime_UTR	286695	286965	286695	ID=Msa1364230-mRNA-1:five_prime_utr;Parent=Msa1364230-mRNA-1
tig0018106	five_prime_UTR	285693	285723	285693	ID=Msa1364230-mRNA-1:five_prime_utr;Parent=Msa1364230-mRNA-1
tig0018106	CDS	285461	285692	285461	ID=Msa1364230-mRNA-1:cds;Parent=Msa1364230-mRNA-1
tig0018106	CDS	284596	284744	284596	ID=Msa1364230-mRNA-1:cds;Parent=Msa1364230-mRNA-1
tig0018106	CDS	284436	284510	284436	ID=Msa1364230-mRNA-1:cds;Parent=Msa1364230-mRNA-1
tig0018106	CDS	283796	283996	283796	ID=Msa1364230-mRNA-1:cds;Parent=Msa1364230-mRNA-1
tig0018106	CDS	283330	283710	283330	ID=Msa1364230-mRNA-1:cds;Parent=Msa1364230-mRNA-1
tig0018106	three_prime_UTR	282912	283329	282912	ID=Msa1364230-mRNA-1:three_prime_utr;Parent=Msa1364230-mRNA-1

Gene Sequence

>Msa1364230

ATGAAGTGCTTATGTGAGAAAGACTCTGCTCATTCAACACCCCACCATGTTTTCGGATGTCCATCATGGGGAAGATCTTCTGAATCTGAAGTCCAACAAACATCCATGTCCAAAAGTTTGAGCTTCAAAGTGGAAGCTCTACCACAAGAATGCCACAACAGTAAAGCACTGAGTTTTCAATTTCAAGAACAGGATTCATCTTCAACTCAATCGACTGGCTCATCACAATCAGGTCACATTCCTTTCCAGCATTGTTCTTCTACTGGTTCAACATTTAAGAGAACCGAGGAGAACAATATGGGATGTCTCATCGAATCATCATCTATTGGGAGTCCAAATCTCACCGTCCATCCTCCACTAATGGATCACAGCCAATCACTTGCGCATGCTGCACTCCACTATGCTGATCCAGGCTACAATGGCCTACTTTCTGCTTCATATGGCCAACAATATAAGGCTTATAGCATCATGTCATCAAATTCTGACCAGCTTCTTCAGGGCCAGCTAATGGAAACTGCTTCTGTCCGAATTCCCTTGCCATCTGATATGGCGGAAGAACCCATATATGTGAATTCAAAGCAGTACCATGCTATTATGAGGCGAAGACAGTGTCGGGCAAAACTTGAAGCACATAACAAACTCATAAAGGATCGTAAACCATATCTTCACGAGTCCCGACATGTACATGCATTAAAGAGAGCTAGAGGTGCCGGTGGCCGTTTTCTCAATGCTAAAAAGCTCCAAGAATCAAAGCTTGATTCGCCAAACCATGACCAAAATGTTTCCACCAGCTATACTTGTTTGAATTTGAATGGAAATATGTCGGAATCCAAAATGCATGATCAGGTTGAAAACTACAGAGATGATGCTTCTGATGTCACATACGGATCTCATAGGAATGAAATGTTTCAGCAGCAACAGGAGTTAGAGTTCAGGTTATGCAGTTACCCTTCTTCTCAGACTGGAAGGAACATGCATGATTACAAAGCTGACAAGAATGTTGGTGCGAATCAACGCCGACTATCCGTCCGCATGTGA

Protein sequence

>Msa1364230

MKCLCEKDSAHSTPHHVFGCPSWGRSSESEVQQTSMSKSLSFKVEALPQECHNSKALSFQFQEQDSSSTQSTGSSQSGHIPFQHCSSTGSTFKRTEENNMGCLIESSSIGSPNLTVHPPLMDHSQSLAHAALHYADPGYNGLLSASYGQQYKAYSIMSSNSDQLLQGQLMETASVRIPLPSDMAEEPIYVNSKQYHAIMRRRQCRAKLEAHNKLIKDRKPYLHESRHVHALKRARGAGGRFLNAKKLQESKLDSPNHDQNVSTSYTCLNLNGNMSESKMHDQVENYRDDASDVTYGSHRNEMFQQQQELEFRLCSYPSSQTGRNMHDYKADKNVGANQRRLSVRM*