Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1366320 | XP_003590850.2 | 88.925 | 307 | 28 | 1 | 1 | 301 | 1 | 307 | 0.0 | 563 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1366320 | sp|Q9LUZ4|C3H66_ARATH | 61.189 | 286 | 106 | 2 | 21 | 301 | 2 | 287 | 1.33e-122 | 366 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1366320 | G7I4W5 | 88.925 | 307 | 28 | 1 | 1 | 301 | 1 | 307 | 0.0 | 563 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1366320 | TF | C3H |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1366320 | MtrunA17_Chr1g0187591 | 88.925 | 307 | 28 | 1 | 1 | 301 | 1 | 307 | 0.0 | 563 |
| Msa1366320 | MtrunA17_Chr5g0430211 | 66.990 | 309 | 93 | 3 | 1 | 301 | 1 | 308 | 9.56e-137 | 403 |
| Msa1366320 | MtrunA17_Chr3g0105131 | 65.449 | 301 | 47 | 4 | 1 | 301 | 1 | 244 | 2.40e-128 | 375 |
| Msa1366320 | MtrunA17_Chr3g0105101 | 66.165 | 266 | 37 | 3 | 37 | 301 | 29 | 242 | 8.40e-118 | 344 |
| Msa1366320 | MtrunA17_Chr5g0437251 | 58.076 | 291 | 106 | 4 | 19 | 301 | 13 | 295 | 7.72e-116 | 348 |
| Msa1366320 | MtrunA17_Chr7g0257831 | 54.730 | 296 | 107 | 3 | 33 | 301 | 47 | 342 | 3.41e-109 | 333 |
| Msa1366320 | MtrunA17_Chr3g0113651 | 55.435 | 276 | 76 | 4 | 31 | 301 | 8 | 241 | 3.86e-99 | 300 |
| Msa1366320 | MtrunA17_Chr3g0088521 | 50.000 | 304 | 117 | 4 | 30 | 301 | 42 | 342 | 8.58e-97 | 300 |
| Msa1366320 | MtrunA17_Chr1g0171151 | 46.599 | 294 | 130 | 4 | 33 | 301 | 31 | 322 | 1.44e-83 | 263 |
| Msa1366320 | MtrunA17_Chr3g0092171 | 46.181 | 288 | 125 | 5 | 30 | 301 | 80 | 353 | 6.55e-78 | 246 |
| Msa1366320 | MtrunA17_Chr3g0105141 | 67.826 | 115 | 36 | 1 | 188 | 301 | 1 | 115 | 4.53e-51 | 166 |
| Msa1366320 | MtrunA17_Chr3g0092221 | 40.952 | 210 | 94 | 3 | 119 | 303 | 34 | 238 | 1.15e-47 | 164 |
| Msa1366320 | MtrunA17_Chr3g0135351 | 56.410 | 117 | 40 | 3 | 187 | 301 | 25 | 132 | 4.92e-41 | 144 |
| Msa1366320 | MtrunA17_Chr8g0389561 | 71.084 | 83 | 24 | 0 | 219 | 301 | 77 | 159 | 7.16e-41 | 145 |
| Msa1366320 | MtrunA17_Chr6g0487481 | 69.880 | 83 | 25 | 0 | 219 | 301 | 99 | 181 | 1.05e-40 | 145 |
| Msa1366320 | MtrunA17_Chr2g0324781 | 67.089 | 79 | 26 | 0 | 223 | 301 | 77 | 155 | 8.90e-38 | 138 |
| Msa1366320 | MtrunA17_Chr4g0040391 | 60.241 | 83 | 33 | 0 | 219 | 301 | 56 | 138 | 1.70e-37 | 135 |
| Msa1366320 | MtrunA17_Chr3g0105121 | 59.036 | 83 | 33 | 1 | 222 | 303 | 8 | 90 | 9.28e-27 | 107 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1366320 | AT5G58620.1 | 61.189 | 286 | 106 | 2 | 21 | 301 | 2 | 287 | 1.36e-123 | 366 |
| Msa1366320 | AT3G55980.1 | 56.146 | 301 | 120 | 3 | 1 | 301 | 1 | 289 | 5.63e-115 | 343 |
| Msa1366320 | AT3G55980.2 | 56.146 | 301 | 120 | 3 | 1 | 301 | 68 | 356 | 3.37e-114 | 343 |
| Msa1366320 | AT2G40140.2 | 55.776 | 303 | 121 | 5 | 1 | 301 | 1 | 292 | 5.81e-112 | 336 |
| Msa1366320 | AT2G40140.1 | 55.776 | 303 | 121 | 5 | 1 | 301 | 1 | 292 | 5.81e-112 | 336 |
| Msa1366320 | AT2G41900.1 | 52.145 | 303 | 116 | 4 | 25 | 301 | 40 | 339 | 8.58e-103 | 316 |
| Msa1366320 | AT5G12850.1 | 51.645 | 304 | 118 | 4 | 25 | 301 | 34 | 335 | 7.33e-101 | 311 |
| Msa1366320 | AT5G07500.1 | 61.856 | 97 | 37 | 0 | 205 | 301 | 34 | 130 | 1.24e-42 | 147 |
| Msa1366320 | AT4G29190.1 | 59.091 | 110 | 44 | 1 | 192 | 301 | 49 | 157 | 1.67e-41 | 147 |
| Msa1366320 | AT2G25900.2 | 67.470 | 83 | 27 | 0 | 219 | 301 | 86 | 168 | 7.06e-41 | 144 |
| Msa1366320 | AT2G25900.1 | 67.470 | 83 | 27 | 0 | 219 | 301 | 86 | 168 | 7.06e-41 | 144 |
| Msa1366320 | AT2G19810.1 | 64.583 | 96 | 32 | 1 | 208 | 301 | 61 | 156 | 8.09e-41 | 145 |
| Msa1366320 | AT1G03790.1 | 53.097 | 113 | 48 | 2 | 190 | 301 | 53 | 161 | 1.27e-36 | 135 |
| Msa1366320 | AT5G44260.1 | 57.843 | 102 | 38 | 2 | 201 | 301 | 42 | 139 | 2.79e-35 | 131 |
Find 83 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTCTTCATTGTGCTGTTTC+TGG | 0.137009 | tig0018446:+194519 | Msa1366320:CDS |
| CTTGTCAAACTGGTTTGATT+AGG | 0.230886 | tig0018446:+194205 | Msa1366320:CDS |
| GGTGTGTTGTCTTATATTCT+TGG | 0.275343 | tig0018446:+194447 | Msa1366320:CDS |
| GAACGCCATTATATCATCTT+TGG | 0.288121 | tig0018446:-194292 | None:intergenic |
| TTGTCAAACTGGTTTGATTA+GGG | 0.297404 | tig0018446:+194206 | Msa1366320:CDS |
| TATATAGTACAGATGAATTT+AGG | 0.309340 | tig0018446:+194832 | Msa1366320:CDS |
| GACGATTTCCTTAAGAAAAT+AGG | 0.314739 | tig0018446:+194711 | Msa1366320:CDS |
| CTTGTTGTTGCTCCACCATT+TGG | 0.317761 | tig0018446:-194737 | None:intergenic |
| CTTATGGTTGCTGCTTTGTT+TGG | 0.322501 | tig0018446:+194417 | Msa1366320:CDS |
| GAGTGCCCCTTTGTTCATCC+TGG | 0.343455 | tig0018446:+194909 | Msa1366320:CDS |
| GTGTCCCTTGCCCTGAGTTT+CGG | 0.346896 | tig0018446:+194976 | Msa1366320:CDS |
| AATAGAAAACCTTGTCAAAC+TGG | 0.348122 | tig0018446:+194195 | Msa1366320:CDS |
| CAAGGGCTTATTCTCATGAT+TGG | 0.357705 | tig0018446:+194883 | Msa1366320:CDS |
| TTCAGCCAAAGATGATATAA+TGG | 0.367048 | tig0018446:+194287 | Msa1366320:CDS |
| GAAGGTTGGATCAAAAGAAA+TGG | 0.391384 | tig0018446:+194374 | Msa1366320:CDS |
| TGAAGAGAGGACACCTCTTA+TGG | 0.399251 | tig0018446:+194401 | Msa1366320:CDS |
| TTGTCTTATATTCTTGGAAC+CGG | 0.399584 | tig0018446:+194453 | Msa1366320:CDS |
| CCGCTGATGCAAACGGTAAC+CGG | 0.400035 | tig0018446:+194604 | Msa1366320:CDS |
| CTAAGAGTATCTTCGGTTCA+AGG | 0.415813 | tig0018446:+194652 | Msa1366320:CDS |
| TCAAAGTGAAGCCTTGTTCA+AGG | 0.431149 | tig0018446:+194865 | Msa1366320:CDS |
| TGCTGCTTTGTTTGGAAGCA+AGG | 0.432478 | tig0018446:+194425 | Msa1366320:CDS |
| TATATTCCATTCTTTATGTC+AGG | 0.439563 | tig0018446:-194813 | None:intergenic |
| GTCAGGTAGGGATGGATCAA+TGG | 0.440308 | tig0018446:-194796 | None:intergenic |
| AGTGCCCCTTTGTTCATCCT+GGG | 0.442388 | tig0018446:+194910 | Msa1366320:CDS |
| AACAAAGCAGCAACCATAAG+AGG | 0.442942 | tig0018446:-194414 | None:intergenic |
| ACCGAGCGTGCGGCTCAGAT+AGG | 0.449079 | tig0018446:+194490 | Msa1366320:CDS |
| AAGGTTGGATCAAAAGAAAT+GGG | 0.451915 | tig0018446:+194375 | Msa1366320:CDS |
| TCGGTTTCTAAGAGTATCTT+CGG | 0.453417 | tig0018446:+194645 | Msa1366320:CDS |
| GGAAGGGATCATGCAACAAA+GGG | 0.458959 | tig0018446:+194997 | Msa1366320:CDS |
| TTATGGTATGGAAGGAAGGT+TGG | 0.462581 | tig0018446:+194360 | Msa1366320:CDS |
| CATGATCCCTTCCGAAACTC+AGG | 0.476678 | tig0018446:-194987 | None:intergenic |
| CCCTATCTGAGCCGCACGCT+CGG | 0.476697 | tig0018446:-194491 | None:intergenic |
| TCCATTCTTTATGTCAGGTA+GGG | 0.481887 | tig0018446:-194808 | None:intergenic |
| TTCTTTATGTCAGGTAGGGA+TGG | 0.483088 | tig0018446:-194804 | None:intergenic |
| GAAAATAGGTTTCCAAATGG+TGG | 0.491205 | tig0018446:+194725 | Msa1366320:CDS |
| CCCTTGCCCTGAGTTTCGGA+AGG | 0.503997 | tig0018446:+194980 | Msa1366320:CDS |
| AGGGTTATGGTATGGAAGGA+AGG | 0.505824 | tig0018446:+194356 | Msa1366320:CDS |
| TCCCTACCTGACATAAAGAA+TGG | 0.512480 | tig0018446:+194807 | Msa1366320:CDS |
| TAAGAAAATAGGTTTCCAAA+TGG | 0.517234 | tig0018446:+194722 | Msa1366320:CDS |
| CAAAGTGAAGCCTTGTTCAA+GGG | 0.517860 | tig0018446:+194866 | Msa1366320:CDS |
| TCAGGTAGGGATGGATCAAT+GGG | 0.518358 | tig0018446:-194795 | None:intergenic |
| AAGTAGGGTTATGGTATGGA+AGG | 0.522426 | tig0018446:+194352 | Msa1366320:CDS |
| GTGCAGTGACTTGATTGTCT+CGG | 0.522663 | tig0018446:+194626 | Msa1366320:CDS |
| CCCTTCCGAAACTCAGGGCA+AGG | 0.525679 | tig0018446:-194981 | None:intergenic |
| GATCATGATGTTGATGAAGT+AGG | 0.526063 | tig0018446:+194336 | Msa1366320:CDS |
| ATGTTGATGAAGTAGGGTTA+TGG | 0.527912 | tig0018446:+194343 | Msa1366320:CDS |
| GTATCTTCGGTTCAAGGAAG+AGG | 0.528667 | tig0018446:+194658 | Msa1366320:CDS |
| CCGGTTACCGTTTGCATCAG+CGG | 0.529093 | tig0018446:-194604 | None:intergenic |
| GCTGCTTTGTTTGGAAGCAA+GGG | 0.529208 | tig0018446:+194426 | Msa1366320:CDS |
| ATCATGATGTTGATGAAGTA+GGG | 0.530587 | tig0018446:+194337 | Msa1366320:CDS |
| AAGCATGTTCTGTATTGAGC+AGG | 0.539162 | tig0018446:-195065 | None:intergenic |
| CCGAGCGTGCGGCTCAGATA+GGG | 0.547437 | tig0018446:+194491 | Msa1366320:CDS |
| CGGAAGGGATCATGCAACAA+AGG | 0.550435 | tig0018446:+194996 | Msa1366320:CDS |
| TTCATCCTGGGGAAAATGCA+AGG | 0.557730 | tig0018446:+194922 | Msa1366320:CDS |
| GTTAGTTCCGCTGATGCAAA+CGG | 0.558347 | tig0018446:+194597 | Msa1366320:CDS |
| TCGGTTAACATCAACGCGGC+CGG | 0.559271 | tig0018446:-194472 | None:intergenic |
| CAATACAGAACATGCTTCTG+AGG | 0.575901 | tig0018446:+195071 | Msa1366320:CDS |
| TTCCATTCTTTATGTCAGGT+AGG | 0.576271 | tig0018446:-194809 | None:intergenic |
| GTGCCCCTTTGTTCATCCTG+GGG | 0.580017 | tig0018446:+194911 | Msa1366320:CDS |
| CATGTGTAATGATATTTCAT+CGG | 0.580467 | tig0018446:-194954 | None:intergenic |
| TTGATTAGGGAAAATGAATG+TGG | 0.584217 | tig0018446:+194219 | Msa1366320:CDS |
| CTAATCAAACCAGTTTGACA+AGG | 0.588552 | tig0018446:-194204 | None:intergenic |
| TTGTTCTGCTGCTTCTGCCG+AGG | 0.591938 | tig0018446:+194542 | Msa1366320:CDS |
| CCTTGCCCTGAGTTTCGGAA+GGG | 0.598605 | tig0018446:+194981 | Msa1366320:CDS |
| GATGAAGTAGGGTTATGGTA+TGG | 0.604921 | tig0018446:+194348 | Msa1366320:CDS |
| GTGGAGCAACAACAAGATGT+AGG | 0.606526 | tig0018446:+194744 | Msa1366320:CDS |
| TTGGCTGAAAACTCAAGCAA+AGG | 0.608890 | tig0018446:-194273 | None:intergenic |
| AAGAAATGGGATATGAAGAG+AGG | 0.624986 | tig0018446:+194388 | Msa1366320:CDS |
| TGAGAATAAGCCCTTGAACA+AGG | 0.627841 | tig0018446:-194876 | None:intergenic |
| AAAACAAAAGTCATGTGCAA+CGG | 0.630659 | tig0018446:+194168 | None:intergenic |
| AAGCAAAAGTTTGACAACCT+CGG | 0.631058 | tig0018446:-194559 | None:intergenic |
| AATGATATTTCATCGGATCA+CGG | 0.635978 | tig0018446:-194947 | None:intergenic |
| CCTTCCGAAACTCAGGGCAA+GGG | 0.646387 | tig0018446:-194980 | None:intergenic |
| AGACAATCAAGTCACTGCAC+CGG | 0.647436 | tig0018446:-194623 | None:intergenic |
| GTTGATGTTAACCGAGCGTG+CGG | 0.649710 | tig0018446:+194480 | Msa1366320:CDS |
| ATGATCCCTTCCGAAACTCA+GGG | 0.652947 | tig0018446:-194986 | None:intergenic |
| TCAAGGAAGAGGATACTACA+AGG | 0.674650 | tig0018446:+194669 | Msa1366320:CDS |
| ACAAGGCAATGTTGATGACG+AGG | 0.685237 | tig0018446:+194686 | Msa1366320:CDS |
| TTTCCCCAGGATGAACAAAG+GGG | 0.706386 | tig0018446:-194914 | None:intergenic |
| GAAGGGATCATGCAACAAAG+GGG | 0.715610 | tig0018446:+194998 | Msa1366320:CDS |
| AGAAACAGCACAATGAAGAG+CGG | 0.722067 | tig0018446:-194517 | None:intergenic |
| GATGCTTGTGAATATGCACA+TGG | 0.754358 | tig0018446:+195020 | Msa1366320:CDS |
| ACGCTCGGTTAACATCAACG+CGG | 0.858999 | tig0018446:-194476 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATAGTACAGATGAATTT+AGG | + | tig0018446:194832-194851 | Msa1366320:CDS | 20.0% |
| !! | TATATAGTACAGATGAATTT+AGG | + | tig0018446:194832-194851 | Msa1366320:CDS | 20.0% |
| !! | TTTGGAAACCTATTTTCTTA+AGG | - | tig0018446:194722-194741 | None:intergenic | 25.0% |
| ! | TAAGAAAATAGGTTTCCAAA+TGG | + | tig0018446:194722-194741 | Msa1366320:CDS | 25.0% |
| ! | TATATTCCATTCTTTATGTC+AGG | - | tig0018446:194816-194835 | None:intergenic | 25.0% |
| ! | CATGTGTAATGATATTTCAT+CGG | - | tig0018446:194957-194976 | None:intergenic | 25.0% |
| !! | TTTGGAAACCTATTTTCTTA+AGG | - | tig0018446:194722-194741 | None:intergenic | 25.0% |
| ! | TAAGAAAATAGGTTTCCAAA+TGG | + | tig0018446:194722-194741 | Msa1366320:CDS | 25.0% |
| ! | TATATTCCATTCTTTATGTC+AGG | - | tig0018446:194816-194835 | None:intergenic | 25.0% |
| ! | CATGTGTAATGATATTTCAT+CGG | - | tig0018446:194957-194976 | None:intergenic | 25.0% |
| AATAGAAAACCTTGTCAAAC+TGG | + | tig0018446:194195-194214 | Msa1366320:CDS | 30.0% | |
| !! | TTGTCAAACTGGTTTGATTA+GGG | + | tig0018446:194206-194225 | Msa1366320:CDS | 30.0% |
| TTGATTAGGGAAAATGAATG+TGG | + | tig0018446:194219-194238 | Msa1366320:CDS | 30.0% | |
| TTCAGCCAAAGATGATATAA+TGG | + | tig0018446:194287-194306 | Msa1366320:CDS | 30.0% | |
| ! | ATCATGATGTTGATGAAGTA+GGG | + | tig0018446:194337-194356 | Msa1366320:CDS | 30.0% |
| AAGGTTGGATCAAAAGAAAT+GGG | + | tig0018446:194375-194394 | Msa1366320:CDS | 30.0% | |
| TTGTCTTATATTCTTGGAAC+CGG | + | tig0018446:194453-194472 | Msa1366320:CDS | 30.0% | |
| GACGATTTCCTTAAGAAAAT+AGG | + | tig0018446:194711-194730 | Msa1366320:CDS | 30.0% | |
| AATGATATTTCATCGGATCA+CGG | - | tig0018446:194950-194969 | None:intergenic | 30.0% | |
| AATAGAAAACCTTGTCAAAC+TGG | + | tig0018446:194195-194214 | Msa1366320:CDS | 30.0% | |
| !! | TTGTCAAACTGGTTTGATTA+GGG | + | tig0018446:194206-194225 | Msa1366320:CDS | 30.0% |
| TTGATTAGGGAAAATGAATG+TGG | + | tig0018446:194219-194238 | Msa1366320:CDS | 30.0% | |
| TTCAGCCAAAGATGATATAA+TGG | + | tig0018446:194287-194306 | Msa1366320:CDS | 30.0% | |
| ! | ATCATGATGTTGATGAAGTA+GGG | + | tig0018446:194337-194356 | Msa1366320:CDS | 30.0% |
| AAGGTTGGATCAAAAGAAAT+GGG | + | tig0018446:194375-194394 | Msa1366320:CDS | 30.0% | |
| TTGTCTTATATTCTTGGAAC+CGG | + | tig0018446:194453-194472 | Msa1366320:CDS | 30.0% | |
| GACGATTTCCTTAAGAAAAT+AGG | + | tig0018446:194711-194730 | Msa1366320:CDS | 30.0% | |
| AATGATATTTCATCGGATCA+CGG | - | tig0018446:194950-194969 | None:intergenic | 30.0% | |
| CTAATCAAACCAGTTTGACA+AGG | - | tig0018446:194207-194226 | None:intergenic | 35.0% | |
| !! | CTTGTCAAACTGGTTTGATT+AGG | + | tig0018446:194205-194224 | Msa1366320:CDS | 35.0% |
| GAACGCCATTATATCATCTT+TGG | - | tig0018446:194295-194314 | None:intergenic | 35.0% | |
| ! | GATCATGATGTTGATGAAGT+AGG | + | tig0018446:194336-194355 | Msa1366320:CDS | 35.0% |
| ! | ATGTTGATGAAGTAGGGTTA+TGG | + | tig0018446:194343-194362 | Msa1366320:CDS | 35.0% |
| GAAGGTTGGATCAAAAGAAA+TGG | + | tig0018446:194374-194393 | Msa1366320:CDS | 35.0% | |
| AAGAAATGGGATATGAAGAG+AGG | + | tig0018446:194388-194407 | Msa1366320:CDS | 35.0% | |
| GGTGTGTTGTCTTATATTCT+TGG | + | tig0018446:194447-194466 | Msa1366320:CDS | 35.0% | |
| AAGCAAAAGTTTGACAACCT+CGG | - | tig0018446:194562-194581 | None:intergenic | 35.0% | |
| !! | TCGGTTTCTAAGAGTATCTT+CGG | + | tig0018446:194645-194664 | Msa1366320:CDS | 35.0% |
| GAAAATAGGTTTCCAAATGG+TGG | + | tig0018446:194725-194744 | Msa1366320:CDS | 35.0% | |
| TCCATTCTTTATGTCAGGTA+GGG | - | tig0018446:194811-194830 | None:intergenic | 35.0% | |
| TTCCATTCTTTATGTCAGGT+AGG | - | tig0018446:194812-194831 | None:intergenic | 35.0% | |
| !! | CACATGGTATTTTTGAATGC+TGG | + | tig0018446:195036-195055 | Msa1366320:CDS | 35.0% |
| CTAATCAAACCAGTTTGACA+AGG | - | tig0018446:194207-194226 | None:intergenic | 35.0% | |
| !! | CTTGTCAAACTGGTTTGATT+AGG | + | tig0018446:194205-194224 | Msa1366320:CDS | 35.0% |
| GAACGCCATTATATCATCTT+TGG | - | tig0018446:194295-194314 | None:intergenic | 35.0% | |
| ! | GATCATGATGTTGATGAAGT+AGG | + | tig0018446:194336-194355 | Msa1366320:CDS | 35.0% |
| ! | ATGTTGATGAAGTAGGGTTA+TGG | + | tig0018446:194343-194362 | Msa1366320:CDS | 35.0% |
| GAAGGTTGGATCAAAAGAAA+TGG | + | tig0018446:194374-194393 | Msa1366320:CDS | 35.0% | |
| AAGAAATGGGATATGAAGAG+AGG | + | tig0018446:194388-194407 | Msa1366320:CDS | 35.0% | |
| GGTGTGTTGTCTTATATTCT+TGG | + | tig0018446:194447-194466 | Msa1366320:CDS | 35.0% | |
| AAGCAAAAGTTTGACAACCT+CGG | - | tig0018446:194562-194581 | None:intergenic | 35.0% | |
| !! | TCGGTTTCTAAGAGTATCTT+CGG | + | tig0018446:194645-194664 | Msa1366320:CDS | 35.0% |
| GAAAATAGGTTTCCAAATGG+TGG | + | tig0018446:194725-194744 | Msa1366320:CDS | 35.0% | |
| TCCATTCTTTATGTCAGGTA+GGG | - | tig0018446:194811-194830 | None:intergenic | 35.0% | |
| TTCCATTCTTTATGTCAGGT+AGG | - | tig0018446:194812-194831 | None:intergenic | 35.0% | |
| !! | CACATGGTATTTTTGAATGC+TGG | + | tig0018446:195036-195055 | Msa1366320:CDS | 35.0% |
| TTGGCTGAAAACTCAAGCAA+AGG | - | tig0018446:194276-194295 | None:intergenic | 40.0% | |
| GATGAAGTAGGGTTATGGTA+TGG | + | tig0018446:194348-194367 | Msa1366320:CDS | 40.0% | |
| AAGTAGGGTTATGGTATGGA+AGG | + | tig0018446:194352-194371 | Msa1366320:CDS | 40.0% | |
| TTATGGTATGGAAGGAAGGT+TGG | + | tig0018446:194360-194379 | Msa1366320:CDS | 40.0% | |
| AACAAAGCAGCAACCATAAG+AGG | - | tig0018446:194417-194436 | None:intergenic | 40.0% | |
| !! | CTTATGGTTGCTGCTTTGTT+TGG | + | tig0018446:194417-194436 | Msa1366320:CDS | 40.0% |
| AGAAACAGCACAATGAAGAG+CGG | - | tig0018446:194520-194539 | None:intergenic | 40.0% | |
| !! | CTAAGAGTATCTTCGGTTCA+AGG | + | tig0018446:194652-194671 | Msa1366320:CDS | 40.0% |
| TCAAGGAAGAGGATACTACA+AGG | + | tig0018446:194669-194688 | Msa1366320:CDS | 40.0% | |
| TTCTTTATGTCAGGTAGGGA+TGG | - | tig0018446:194807-194826 | None:intergenic | 40.0% | |
| TCCCTACCTGACATAAAGAA+TGG | + | tig0018446:194807-194826 | Msa1366320:CDS | 40.0% | |
| !! | TCAAAGTGAAGCCTTGTTCA+AGG | + | tig0018446:194865-194884 | Msa1366320:CDS | 40.0% |
| !! | CAAAGTGAAGCCTTGTTCAA+GGG | + | tig0018446:194866-194885 | Msa1366320:CDS | 40.0% |
| TGAGAATAAGCCCTTGAACA+AGG | - | tig0018446:194879-194898 | None:intergenic | 40.0% | |
| CAAGGGCTTATTCTCATGAT+TGG | + | tig0018446:194883-194902 | Msa1366320:CDS | 40.0% | |
| ! | TTTTCCCCAGGATGAACAAA+GGG | - | tig0018446:194918-194937 | None:intergenic | 40.0% |
| ! | ATTTTCCCCAGGATGAACAA+AGG | - | tig0018446:194919-194938 | None:intergenic | 40.0% |
| GATGCTTGTGAATATGCACA+TGG | + | tig0018446:195020-195039 | Msa1366320:CDS | 40.0% | |
| AAGCATGTTCTGTATTGAGC+AGG | - | tig0018446:195068-195087 | None:intergenic | 40.0% | |
| TTGGCTGAAAACTCAAGCAA+AGG | - | tig0018446:194276-194295 | None:intergenic | 40.0% | |
| GATGAAGTAGGGTTATGGTA+TGG | + | tig0018446:194348-194367 | Msa1366320:CDS | 40.0% | |
| AAGTAGGGTTATGGTATGGA+AGG | + | tig0018446:194352-194371 | Msa1366320:CDS | 40.0% | |
| TTATGGTATGGAAGGAAGGT+TGG | + | tig0018446:194360-194379 | Msa1366320:CDS | 40.0% | |
| AACAAAGCAGCAACCATAAG+AGG | - | tig0018446:194417-194436 | None:intergenic | 40.0% | |
| !! | CTTATGGTTGCTGCTTTGTT+TGG | + | tig0018446:194417-194436 | Msa1366320:CDS | 40.0% |
| AGAAACAGCACAATGAAGAG+CGG | - | tig0018446:194520-194539 | None:intergenic | 40.0% | |
| !! | CTAAGAGTATCTTCGGTTCA+AGG | + | tig0018446:194652-194671 | Msa1366320:CDS | 40.0% |
| TCAAGGAAGAGGATACTACA+AGG | + | tig0018446:194669-194688 | Msa1366320:CDS | 40.0% | |
| TTCTTTATGTCAGGTAGGGA+TGG | - | tig0018446:194807-194826 | None:intergenic | 40.0% | |
| TCCCTACCTGACATAAAGAA+TGG | + | tig0018446:194807-194826 | Msa1366320:CDS | 40.0% | |
| !! | TCAAAGTGAAGCCTTGTTCA+AGG | + | tig0018446:194865-194884 | Msa1366320:CDS | 40.0% |
| !! | CAAAGTGAAGCCTTGTTCAA+GGG | + | tig0018446:194866-194885 | Msa1366320:CDS | 40.0% |
| TGAGAATAAGCCCTTGAACA+AGG | - | tig0018446:194879-194898 | None:intergenic | 40.0% | |
| CAAGGGCTTATTCTCATGAT+TGG | + | tig0018446:194883-194902 | Msa1366320:CDS | 40.0% | |
| ! | TTTTCCCCAGGATGAACAAA+GGG | - | tig0018446:194918-194937 | None:intergenic | 40.0% |
| ! | ATTTTCCCCAGGATGAACAA+AGG | - | tig0018446:194919-194938 | None:intergenic | 40.0% |
| GATGCTTGTGAATATGCACA+TGG | + | tig0018446:195020-195039 | Msa1366320:CDS | 40.0% | |
| AAGCATGTTCTGTATTGAGC+AGG | - | tig0018446:195068-195087 | None:intergenic | 40.0% | |
| AGGGTTATGGTATGGAAGGA+AGG | + | tig0018446:194356-194375 | Msa1366320:CDS | 45.0% | |
| TGAAGAGAGGACACCTCTTA+TGG | + | tig0018446:194401-194420 | Msa1366320:CDS | 45.0% | |
| !! | TGCTGCTTTGTTTGGAAGCA+AGG | + | tig0018446:194425-194444 | Msa1366320:CDS | 45.0% |
| !! | GCTGCTTTGTTTGGAAGCAA+GGG | + | tig0018446:194426-194445 | Msa1366320:CDS | 45.0% |
| !! | GCTCTTCATTGTGCTGTTTC+TGG | + | tig0018446:194519-194538 | Msa1366320:CDS | 45.0% |
| GTTAGTTCCGCTGATGCAAA+CGG | + | tig0018446:194597-194616 | Msa1366320:CDS | 45.0% | |
| AGACAATCAAGTCACTGCAC+CGG | - | tig0018446:194626-194645 | None:intergenic | 45.0% | |
| GTGCAGTGACTTGATTGTCT+CGG | + | tig0018446:194626-194645 | Msa1366320:CDS | 45.0% | |
| GTATCTTCGGTTCAAGGAAG+AGG | + | tig0018446:194658-194677 | Msa1366320:CDS | 45.0% | |
| !! | ACAAGGCAATGTTGATGACG+AGG | + | tig0018446:194686-194705 | Msa1366320:CDS | 45.0% |
| !! | CTTGTTGTTGCTCCACCATT+TGG | - | tig0018446:194740-194759 | None:intergenic | 45.0% |
| GTGGAGCAACAACAAGATGT+AGG | + | tig0018446:194744-194763 | Msa1366320:CDS | 45.0% | |
| TCAGGTAGGGATGGATCAAT+GGG | - | tig0018446:194798-194817 | None:intergenic | 45.0% | |
| TTTCCCCAGGATGAACAAAG+GGG | - | tig0018446:194917-194936 | None:intergenic | 45.0% | |
| TTCATCCTGGGGAAAATGCA+AGG | + | tig0018446:194922-194941 | Msa1366320:CDS | 45.0% | |
| ATGATCCCTTCCGAAACTCA+GGG | - | tig0018446:194989-195008 | None:intergenic | 45.0% | |
| GGAAGGGATCATGCAACAAA+GGG | + | tig0018446:194997-195016 | Msa1366320:CDS | 45.0% | |
| GAAGGGATCATGCAACAAAG+GGG | + | tig0018446:194998-195017 | Msa1366320:CDS | 45.0% | |
| AGGGTTATGGTATGGAAGGA+AGG | + | tig0018446:194356-194375 | Msa1366320:CDS | 45.0% | |
| TGAAGAGAGGACACCTCTTA+TGG | + | tig0018446:194401-194420 | Msa1366320:CDS | 45.0% | |
| !! | TGCTGCTTTGTTTGGAAGCA+AGG | + | tig0018446:194425-194444 | Msa1366320:CDS | 45.0% |
| !! | GCTGCTTTGTTTGGAAGCAA+GGG | + | tig0018446:194426-194445 | Msa1366320:CDS | 45.0% |
| !! | GCTCTTCATTGTGCTGTTTC+TGG | + | tig0018446:194519-194538 | Msa1366320:CDS | 45.0% |
| GTTAGTTCCGCTGATGCAAA+CGG | + | tig0018446:194597-194616 | Msa1366320:CDS | 45.0% | |
| AGACAATCAAGTCACTGCAC+CGG | - | tig0018446:194626-194645 | None:intergenic | 45.0% | |
| GTGCAGTGACTTGATTGTCT+CGG | + | tig0018446:194626-194645 | Msa1366320:CDS | 45.0% | |
| GTATCTTCGGTTCAAGGAAG+AGG | + | tig0018446:194658-194677 | Msa1366320:CDS | 45.0% | |
| !! | ACAAGGCAATGTTGATGACG+AGG | + | tig0018446:194686-194705 | Msa1366320:CDS | 45.0% |
| !! | CTTGTTGTTGCTCCACCATT+TGG | - | tig0018446:194740-194759 | None:intergenic | 45.0% |
| GTGGAGCAACAACAAGATGT+AGG | + | tig0018446:194744-194763 | Msa1366320:CDS | 45.0% | |
| TCAGGTAGGGATGGATCAAT+GGG | - | tig0018446:194798-194817 | None:intergenic | 45.0% | |
| TTTCCCCAGGATGAACAAAG+GGG | - | tig0018446:194917-194936 | None:intergenic | 45.0% | |
| TTCATCCTGGGGAAAATGCA+AGG | + | tig0018446:194922-194941 | Msa1366320:CDS | 45.0% | |
| ATGATCCCTTCCGAAACTCA+GGG | - | tig0018446:194989-195008 | None:intergenic | 45.0% | |
| GGAAGGGATCATGCAACAAA+GGG | + | tig0018446:194997-195016 | Msa1366320:CDS | 45.0% | |
| GAAGGGATCATGCAACAAAG+GGG | + | tig0018446:194998-195017 | Msa1366320:CDS | 45.0% | |
| ACGCTCGGTTAACATCAACG+CGG | - | tig0018446:194479-194498 | None:intergenic | 50.0% | |
| GTTGATGTTAACCGAGCGTG+CGG | + | tig0018446:194480-194499 | Msa1366320:CDS | 50.0% | |
| GTCAGGTAGGGATGGATCAA+TGG | - | tig0018446:194799-194818 | None:intergenic | 50.0% | |
| AGTGCCCCTTTGTTCATCCT+GGG | + | tig0018446:194910-194929 | Msa1366320:CDS | 50.0% | |
| CATGATCCCTTCCGAAACTC+AGG | - | tig0018446:194990-195009 | None:intergenic | 50.0% | |
| CGGAAGGGATCATGCAACAA+AGG | + | tig0018446:194996-195015 | Msa1366320:CDS | 50.0% | |
| ACGCTCGGTTAACATCAACG+CGG | - | tig0018446:194479-194498 | None:intergenic | 50.0% | |
| GTTGATGTTAACCGAGCGTG+CGG | + | tig0018446:194480-194499 | Msa1366320:CDS | 50.0% | |
| GTCAGGTAGGGATGGATCAA+TGG | - | tig0018446:194799-194818 | None:intergenic | 50.0% | |
| AGTGCCCCTTTGTTCATCCT+GGG | + | tig0018446:194910-194929 | Msa1366320:CDS | 50.0% | |
| CATGATCCCTTCCGAAACTC+AGG | - | tig0018446:194990-195009 | None:intergenic | 50.0% | |
| CGGAAGGGATCATGCAACAA+AGG | + | tig0018446:194996-195015 | Msa1366320:CDS | 50.0% | |
| TCGGTTAACATCAACGCGGC+CGG | - | tig0018446:194475-194494 | None:intergenic | 55.0% | |
| ! | TTGTTCTGCTGCTTCTGCCG+AGG | + | tig0018446:194542-194561 | Msa1366320:CDS | 55.0% |
| CCGGTTACCGTTTGCATCAG+CGG | - | tig0018446:194607-194626 | None:intergenic | 55.0% | |
| CCGCTGATGCAAACGGTAAC+CGG | + | tig0018446:194604-194623 | Msa1366320:CDS | 55.0% | |
| GAGTGCCCCTTTGTTCATCC+TGG | + | tig0018446:194909-194928 | Msa1366320:CDS | 55.0% | |
| GTGCCCCTTTGTTCATCCTG+GGG | + | tig0018446:194911-194930 | Msa1366320:CDS | 55.0% | |
| GTGTCCCTTGCCCTGAGTTT+CGG | + | tig0018446:194976-194995 | Msa1366320:CDS | 55.0% | |
| CCTTCCGAAACTCAGGGCAA+GGG | - | tig0018446:194983-195002 | None:intergenic | 55.0% | |
| CCTTGCCCTGAGTTTCGGAA+GGG | + | tig0018446:194981-195000 | Msa1366320:CDS | 55.0% | |
| TCGGTTAACATCAACGCGGC+CGG | - | tig0018446:194475-194494 | None:intergenic | 55.0% | |
| ! | TTGTTCTGCTGCTTCTGCCG+AGG | + | tig0018446:194542-194561 | Msa1366320:CDS | 55.0% |
| CCGGTTACCGTTTGCATCAG+CGG | - | tig0018446:194607-194626 | None:intergenic | 55.0% | |
| CCGCTGATGCAAACGGTAAC+CGG | + | tig0018446:194604-194623 | Msa1366320:CDS | 55.0% | |
| GAGTGCCCCTTTGTTCATCC+TGG | + | tig0018446:194909-194928 | Msa1366320:CDS | 55.0% | |
| GTGCCCCTTTGTTCATCCTG+GGG | + | tig0018446:194911-194930 | Msa1366320:CDS | 55.0% | |
| GTGTCCCTTGCCCTGAGTTT+CGG | + | tig0018446:194976-194995 | Msa1366320:CDS | 55.0% | |
| CCTTCCGAAACTCAGGGCAA+GGG | - | tig0018446:194983-195002 | None:intergenic | 55.0% | |
| CCTTGCCCTGAGTTTCGGAA+GGG | + | tig0018446:194981-195000 | Msa1366320:CDS | 55.0% | |
| CCCTTGCCCTGAGTTTCGGA+AGG | + | tig0018446:194980-194999 | Msa1366320:CDS | 60.0% | |
| CCCTTCCGAAACTCAGGGCA+AGG | - | tig0018446:194984-195003 | None:intergenic | 60.0% | |
| CCCTTGCCCTGAGTTTCGGA+AGG | + | tig0018446:194980-194999 | Msa1366320:CDS | 60.0% | |
| CCCTTCCGAAACTCAGGGCA+AGG | - | tig0018446:194984-195003 | None:intergenic | 60.0% | |
| ACCGAGCGTGCGGCTCAGAT+AGG | + | tig0018446:194490-194509 | Msa1366320:CDS | 65.0% | |
| CCCTATCTGAGCCGCACGCT+CGG | - | tig0018446:194494-194513 | None:intergenic | 65.0% | |
| CCGAGCGTGCGGCTCAGATA+GGG | + | tig0018446:194491-194510 | Msa1366320:CDS | 65.0% | |
| ! | CGGCGCCTTGCATTTTCCCC+AGG | - | tig0018446:194930-194949 | None:intergenic | 65.0% |
| ACCGAGCGTGCGGCTCAGAT+AGG | + | tig0018446:194490-194509 | Msa1366320:CDS | 65.0% | |
| CCCTATCTGAGCCGCACGCT+CGG | - | tig0018446:194494-194513 | None:intergenic | 65.0% | |
| CCGAGCGTGCGGCTCAGATA+GGG | + | tig0018446:194491-194510 | Msa1366320:CDS | 65.0% | |
| ! | CGGCGCCTTGCATTTTCCCC+AGG | - | tig0018446:194930-194949 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0018446 | gene | 194180 | 195091 | 194180 | ID=Msa1366320;Name=Msa1366320 |
| tig0018446 | mRNA | 194180 | 195091 | 194180 | ID=Msa1366320-mRNA-1;Parent=Msa1366320;Name=Msa1366320-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|-1|0|1|-1|1|1|0|303 |
| tig0018446 | exon | 194180 | 195091 | 194180 | ID=Msa1366320-mRNA-1:exon:15027;Parent=Msa1366320-mRNA-1 |
| tig0018446 | CDS | 194180 | 195091 | 194180 | ID=Msa1366320-mRNA-1:cds;Parent=Msa1366320-mRNA-1 |
| Gene Sequence |
| Protein sequence |
