Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1366460 | PNX77819.1 | 47.863 | 234 | 54 | 4 | 1 | 167 | 1 | 233 | 5.82e-59 | 193 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1366460 | sp|Q9FNG6|C3H51_ARATH | 44.783 | 230 | 60 | 5 | 3 | 167 | 57 | 284 | 1.10e-53 | 177 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1366460 | A0A1S2XVP7 | 48.101 | 237 | 51 | 4 | 1 | 165 | 1 | 237 | 1.37e-60 | 200 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1366460 | TF | C3H |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1366460 | MtrunA17_Chr7g0269781 | 47.479 | 238 | 51 | 5 | 1 | 165 | 1 | 237 | 3.37e-59 | 187 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1366460 | AT5G06420.1 | 44.783 | 230 | 60 | 5 | 3 | 167 | 57 | 284 | 1.12e-54 | 177 |
| Msa1366460 | AT5G06420.2 | 44.783 | 230 | 60 | 5 | 3 | 167 | 57 | 284 | 1.12e-54 | 177 |
| Msa1366460 | AT1G01350.1 | 41.833 | 251 | 60 | 6 | 1 | 167 | 1 | 249 | 4.05e-52 | 169 |
Find 55 sgRNAs with CRISPR-Local
Find 126 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTAACGATGCGATTGAAAT+TGG | 0.135492 | tig0018459:-49437 | None:intergenic |
| TGCGATTGAAATTGGGAAAT+TGG | 0.161287 | tig0018459:-49429 | None:intergenic |
| CTTAGCTTAGCTTATTAGTA+TGG | 0.268048 | tig0018459:+49658 | Msa1366460:intron |
| GCGATTGAAATTGGGAAATT+GGG | 0.304505 | tig0018459:-49428 | None:intergenic |
| GTTGTGAAGGAAATTGAAAT+TGG | 0.356903 | tig0018459:-49492 | None:intergenic |
| TTGAAGTCTTTGCATATGTC+AGG | 0.387439 | tig0018459:-50037 | None:intergenic |
| GTAACGATGCGATTGAAATT+GGG | 0.393252 | tig0018459:-49436 | None:intergenic |
| TCAGCGCACCCTCCTCTTCT+CGG | 0.409916 | tig0018459:-50158 | None:intergenic |
| TGACATATGCAAAGACTTCA+AGG | 0.411330 | tig0018459:+50039 | Msa1366460:CDS |
| TTGTGAAGGAAATTGAAATT+GGG | 0.412163 | tig0018459:-49491 | None:intergenic |
| TGAAGACTTAAAATGAAAGA+TGG | 0.412793 | tig0018459:-49867 | None:intergenic |
| AAAATGAAAGATGGGCTTCT+CGG | 0.416615 | tig0018459:-49858 | None:intergenic |
| CTGCTGGCTGGGTACTGTTA+AGG | 0.417348 | tig0018459:-49528 | None:intergenic |
| TAGCAAAGCAACAGCAACTT+TGG | 0.436558 | tig0018459:+49913 | Msa1366460:CDS |
| TGTGGGTTGTTTAGAAAAGT+TGG | 0.448560 | tig0018459:+49716 | Msa1366460:CDS |
| ACACACTGAAGAAGCAGGTT+TGG | 0.459341 | tig0018459:-49696 | None:intergenic |
| GACCGAGGCGATTACAAGTC+CGG | 0.470020 | tig0018459:+50106 | Msa1366460:CDS |
| GGAAATTGAAATTGGGGAAT+CGG | 0.472531 | tig0018459:-49484 | None:intergenic |
| TGATGAAACTCTAATATAAG+TGG | 0.474441 | tig0018459:-49999 | None:intergenic |
| TGCAAAGACTTCAAGGAGAC+CGG | 0.477457 | tig0018459:+50046 | Msa1366460:CDS |
| CGATTGAAATTGGGAAATTG+GGG | 0.479601 | tig0018459:-49427 | None:intergenic |
| AACCTGCTTCTTCAGTGTGT+GGG | 0.483768 | tig0018459:+49699 | Msa1366460:CDS |
| AAGAAACCTAACCTGCTGGC+TGG | 0.483916 | tig0018459:-49540 | None:intergenic |
| GAAGACTTAAAATGAAAGAT+GGG | 0.487156 | tig0018459:-49866 | None:intergenic |
| AAACCTGCTTCTTCAGTGTG+TGG | 0.491141 | tig0018459:+49698 | Msa1366460:CDS |
| TGAGAATGAAGAAGATAATG+AGG | 0.496162 | tig0018459:+49769 | Msa1366460:CDS |
| GGTGGCAGTTGGACAAAGAA+TGG | 0.496757 | tig0018459:+50128 | Msa1366460:CDS |
| GTTACAACGCATAAGCTTGA+GGG | 0.510648 | tig0018459:+49454 | Msa1366460:five_prime_UTR |
| CGTTACAACGCATAAGCTTG+AGG | 0.517668 | tig0018459:+49453 | Msa1366460:five_prime_UTR |
| AGAAACCTAACCTGCTGGCT+GGG | 0.540786 | tig0018459:-49539 | None:intergenic |
| TTCAAGGAGACCGGGTATTG+TGG | 0.545327 | tig0018459:+50055 | Msa1366460:CDS |
| AGAAGAGGAGGGTGCGCTGA+TGG | 0.548558 | tig0018459:+50161 | Msa1366460:CDS |
| TTCTTTGTCCAACTGCCACC+CGG | 0.548782 | tig0018459:-50125 | None:intergenic |
| ACCGAGGCGATTACAAGTCC+GGG | 0.556767 | tig0018459:+50107 | Msa1366460:CDS |
| GGAATGAAGCCGAGAAGAGG+AGG | 0.558808 | tig0018459:+50149 | Msa1366460:CDS |
| ACCCGGACTTGTAATCGCCT+CGG | 0.560050 | tig0018459:-50108 | None:intergenic |
| TTACAAGTCCGGGTGGCAGT+TGG | 0.560817 | tig0018459:+50117 | Msa1366460:CDS |
| TGCAAGTTTCTTCACGACCG+AGG | 0.564969 | tig0018459:+50091 | Msa1366460:CDS |
| CTTAACAGTACCCAGCCAGC+AGG | 0.565300 | tig0018459:+49529 | Msa1366460:five_prime_UTR |
| TGTGAAGGAAATTGAAATTG+GGG | 0.574911 | tig0018459:-49490 | None:intergenic |
| GAGACCGGGTATTGTGGCTA+CGG | 0.578795 | tig0018459:+50061 | Msa1366460:CDS |
| TTGGTGCTAAGAAGAATTTG+AGG | 0.580649 | tig0018459:+49735 | Msa1366460:CDS |
| ATCGCCGTAGCCACAATACC+CGG | 0.586901 | tig0018459:-50065 | None:intergenic |
| AACCCACACACTGAAGAAGC+AGG | 0.595301 | tig0018459:-49701 | None:intergenic |
| AATGGAATGAAGCCGAGAAG+AGG | 0.595307 | tig0018459:+50146 | Msa1366460:CDS |
| GAAACTCTAATATAAGTGGA+AGG | 0.596767 | tig0018459:-49995 | None:intergenic |
| ATCCGTGGGTCACACTCACA+CGG | 0.602004 | tig0018459:+49962 | Msa1366460:CDS |
| ATAACAGCGATGCGTTGTGA+AGG | 0.608312 | tig0018459:-49505 | None:intergenic |
| TAGTATGGAAGATTCTTCTG+AGG | 0.619198 | tig0018459:+49673 | Msa1366460:exon |
| GCAAAGACTTCAAGGAGACC+GGG | 0.633254 | tig0018459:+50047 | Msa1366460:CDS |
| GTGTGAGTGTGACCCACGGA+TGG | 0.640412 | tig0018459:-49960 | None:intergenic |
| GAATGAAGCCGAGAAGAGGA+GGG | 0.646762 | tig0018459:+50150 | Msa1366460:CDS |
| ATATAAGTGGAAGGTCTGAG+AGG | 0.681694 | tig0018459:-49986 | None:intergenic |
| GACCGTGTGAGTGTGACCCA+CGG | 0.684896 | tig0018459:-49964 | None:intergenic |
| GAGGCGATTACAAGTCCGGG+TGG | 0.724834 | tig0018459:+50110 | Msa1366460:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATACAACATAGTTAGTTTT+AGG | + | tig0018459:49394-49413 | Msa1366460:five_prime_UTR | 20.0% |
| !!! | AATACAACATAGTTAGTTTT+AGG | + | tig0018459:49394-49413 | Msa1366460:five_prime_UTR | 20.0% |
| ! | TTGTGAAGGAAATTGAAATT+GGG | - | tig0018459:49494-49513 | None:intergenic | 25.0% |
| ! | TTAGTCATCTCAATTTGATT+TGG | + | tig0018459:49607-49626 | Msa1366460:intron | 25.0% |
| !! | TAGTCATCTCAATTTGATTT+GGG | + | tig0018459:49608-49627 | Msa1366460:intron | 25.0% |
| ! | GAAGACTTAAAATGAAAGAT+GGG | - | tig0018459:49869-49888 | None:intergenic | 25.0% |
| ! | TGAAGACTTAAAATGAAAGA+TGG | - | tig0018459:49870-49889 | None:intergenic | 25.0% |
| ! | TGATGAAACTCTAATATAAG+TGG | - | tig0018459:50002-50021 | None:intergenic | 25.0% |
| ! | TTGTGAAGGAAATTGAAATT+GGG | - | tig0018459:49494-49513 | None:intergenic | 25.0% |
| ! | TTAGTCATCTCAATTTGATT+TGG | + | tig0018459:49607-49626 | Msa1366460:intron | 25.0% |
| !! | TAGTCATCTCAATTTGATTT+GGG | + | tig0018459:49608-49627 | Msa1366460:intron | 25.0% |
| ! | GAAGACTTAAAATGAAAGAT+GGG | - | tig0018459:49869-49888 | None:intergenic | 25.0% |
| ! | TGAAGACTTAAAATGAAAGA+TGG | - | tig0018459:49870-49889 | None:intergenic | 25.0% |
| ! | TGATGAAACTCTAATATAAG+TGG | - | tig0018459:50002-50021 | None:intergenic | 25.0% |
| TGTGAAGGAAATTGAAATTG+GGG | - | tig0018459:49493-49512 | None:intergenic | 30.0% | |
| GTTGTGAAGGAAATTGAAAT+TGG | - | tig0018459:49495-49514 | None:intergenic | 30.0% | |
| AATTGAGATGACTAAAAGTG+TGG | - | tig0018459:49602-49621 | None:intergenic | 30.0% | |
| CTTAGCTTAGCTTATTAGTA+TGG | + | tig0018459:49658-49677 | Msa1366460:intron | 30.0% | |
| TGAGAATGAAGAAGATAATG+AGG | + | tig0018459:49769-49788 | Msa1366460:CDS | 30.0% | |
| TGAGAAAAAGAACATGAAGA+AGG | + | tig0018459:49817-49836 | Msa1366460:CDS | 30.0% | |
| GAAACTCTAATATAAGTGGA+AGG | - | tig0018459:49998-50017 | None:intergenic | 30.0% | |
| TGTGAAGGAAATTGAAATTG+GGG | - | tig0018459:49493-49512 | None:intergenic | 30.0% | |
| GTTGTGAAGGAAATTGAAAT+TGG | - | tig0018459:49495-49514 | None:intergenic | 30.0% | |
| AATTGAGATGACTAAAAGTG+TGG | - | tig0018459:49602-49621 | None:intergenic | 30.0% | |
| CTTAGCTTAGCTTATTAGTA+TGG | + | tig0018459:49658-49677 | Msa1366460:intron | 30.0% | |
| TGAGAATGAAGAAGATAATG+AGG | + | tig0018459:49769-49788 | Msa1366460:CDS | 30.0% | |
| TGAGAAAAAGAACATGAAGA+AGG | + | tig0018459:49817-49836 | Msa1366460:CDS | 30.0% | |
| GAAACTCTAATATAAGTGGA+AGG | - | tig0018459:49998-50017 | None:intergenic | 30.0% | |
| CGATTGAAATTGGGAAATTG+GGG | - | tig0018459:49430-49449 | None:intergenic | 35.0% | |
| GCGATTGAAATTGGGAAATT+GGG | - | tig0018459:49431-49450 | None:intergenic | 35.0% | |
| TGCGATTGAAATTGGGAAAT+TGG | - | tig0018459:49432-49451 | None:intergenic | 35.0% | |
| GTAACGATGCGATTGAAATT+GGG | - | tig0018459:49439-49458 | None:intergenic | 35.0% | |
| TGTAACGATGCGATTGAAAT+TGG | - | tig0018459:49440-49459 | None:intergenic | 35.0% | |
| GGAAATTGAAATTGGGGAAT+CGG | - | tig0018459:49487-49506 | None:intergenic | 35.0% | |
| TAGTATGGAAGATTCTTCTG+AGG | + | tig0018459:49673-49692 | Msa1366460:exon | 35.0% | |
| ! | TGTGGGTTGTTTAGAAAAGT+TGG | + | tig0018459:49716-49735 | Msa1366460:CDS | 35.0% |
| !! | TTGGTGCTAAGAAGAATTTG+AGG | + | tig0018459:49735-49754 | Msa1366460:CDS | 35.0% |
| ! | AAAATGAAAGATGGGCTTCT+CGG | - | tig0018459:49861-49880 | None:intergenic | 35.0% |
| !!! | ATTTTTCAAGTTCCATCCGT+GGG | + | tig0018459:49948-49967 | Msa1366460:CDS | 35.0% |
| TTGAAGTCTTTGCATATGTC+AGG | - | tig0018459:50040-50059 | None:intergenic | 35.0% | |
| TGACATATGCAAAGACTTCA+AGG | + | tig0018459:50039-50058 | Msa1366460:CDS | 35.0% | |
| CGATTGAAATTGGGAAATTG+GGG | - | tig0018459:49430-49449 | None:intergenic | 35.0% | |
| GCGATTGAAATTGGGAAATT+GGG | - | tig0018459:49431-49450 | None:intergenic | 35.0% | |
| TGCGATTGAAATTGGGAAAT+TGG | - | tig0018459:49432-49451 | None:intergenic | 35.0% | |
| GTAACGATGCGATTGAAATT+GGG | - | tig0018459:49439-49458 | None:intergenic | 35.0% | |
| TGTAACGATGCGATTGAAAT+TGG | - | tig0018459:49440-49459 | None:intergenic | 35.0% | |
| GGAAATTGAAATTGGGGAAT+CGG | - | tig0018459:49487-49506 | None:intergenic | 35.0% | |
| TAGTATGGAAGATTCTTCTG+AGG | + | tig0018459:49673-49692 | Msa1366460:exon | 35.0% | |
| ! | TGTGGGTTGTTTAGAAAAGT+TGG | + | tig0018459:49716-49735 | Msa1366460:CDS | 35.0% |
| !! | TTGGTGCTAAGAAGAATTTG+AGG | + | tig0018459:49735-49754 | Msa1366460:CDS | 35.0% |
| ! | AAAATGAAAGATGGGCTTCT+CGG | - | tig0018459:49861-49880 | None:intergenic | 35.0% |
| !!! | ATTTTTCAAGTTCCATCCGT+GGG | + | tig0018459:49948-49967 | Msa1366460:CDS | 35.0% |
| TTGAAGTCTTTGCATATGTC+AGG | - | tig0018459:50040-50059 | None:intergenic | 35.0% | |
| TGACATATGCAAAGACTTCA+AGG | + | tig0018459:50039-50058 | Msa1366460:CDS | 35.0% | |
| GTTACAACGCATAAGCTTGA+GGG | + | tig0018459:49454-49473 | Msa1366460:five_prime_UTR | 40.0% | |
| TCAAAAGAAACCTAACCTGC+TGG | - | tig0018459:49547-49566 | None:intergenic | 40.0% | |
| TAGCAAAGCAACAGCAACTT+TGG | + | tig0018459:49913-49932 | Msa1366460:CDS | 40.0% | |
| !!! | CATTTTTCAAGTTCCATCCG+TGG | + | tig0018459:49947-49966 | Msa1366460:CDS | 40.0% |
| ATATAAGTGGAAGGTCTGAG+AGG | - | tig0018459:49989-50008 | None:intergenic | 40.0% | |
| GTTACAACGCATAAGCTTGA+GGG | + | tig0018459:49454-49473 | Msa1366460:five_prime_UTR | 40.0% | |
| TCAAAAGAAACCTAACCTGC+TGG | - | tig0018459:49547-49566 | None:intergenic | 40.0% | |
| TAGCAAAGCAACAGCAACTT+TGG | + | tig0018459:49913-49932 | Msa1366460:CDS | 40.0% | |
| !!! | CATTTTTCAAGTTCCATCCG+TGG | + | tig0018459:49947-49966 | Msa1366460:CDS | 40.0% |
| ATATAAGTGGAAGGTCTGAG+AGG | - | tig0018459:49989-50008 | None:intergenic | 40.0% | |
| CGTTACAACGCATAAGCTTG+AGG | + | tig0018459:49453-49472 | Msa1366460:five_prime_UTR | 45.0% | |
| ATAACAGCGATGCGTTGTGA+AGG | - | tig0018459:49508-49527 | None:intergenic | 45.0% | |
| ACACACTGAAGAAGCAGGTT+TGG | - | tig0018459:49699-49718 | None:intergenic | 45.0% | |
| AAACCTGCTTCTTCAGTGTG+TGG | + | tig0018459:49698-49717 | Msa1366460:CDS | 45.0% | |
| AACCTGCTTCTTCAGTGTGT+GGG | + | tig0018459:49699-49718 | Msa1366460:CDS | 45.0% | |
| TGCAAAGACTTCAAGGAGAC+CGG | + | tig0018459:50046-50065 | Msa1366460:CDS | 45.0% | |
| AATGGAATGAAGCCGAGAAG+AGG | + | tig0018459:50146-50165 | Msa1366460:CDS | 45.0% | |
| CGTTACAACGCATAAGCTTG+AGG | + | tig0018459:49453-49472 | Msa1366460:five_prime_UTR | 45.0% | |
| ATAACAGCGATGCGTTGTGA+AGG | - | tig0018459:49508-49527 | None:intergenic | 45.0% | |
| ACACACTGAAGAAGCAGGTT+TGG | - | tig0018459:49699-49718 | None:intergenic | 45.0% | |
| AAACCTGCTTCTTCAGTGTG+TGG | + | tig0018459:49698-49717 | Msa1366460:CDS | 45.0% | |
| AACCTGCTTCTTCAGTGTGT+GGG | + | tig0018459:49699-49718 | Msa1366460:CDS | 45.0% | |
| TGCAAAGACTTCAAGGAGAC+CGG | + | tig0018459:50046-50065 | Msa1366460:CDS | 45.0% | |
| AATGGAATGAAGCCGAGAAG+AGG | + | tig0018459:50146-50165 | Msa1366460:CDS | 45.0% | |
| ! | AGAAACCTAACCTGCTGGCT+GGG | - | tig0018459:49542-49561 | None:intergenic | 50.0% |
| AAGAAACCTAACCTGCTGGC+TGG | - | tig0018459:49543-49562 | None:intergenic | 50.0% | |
| AACCCACACACTGAAGAAGC+AGG | - | tig0018459:49704-49723 | None:intergenic | 50.0% | |
| GCAAAGACTTCAAGGAGACC+GGG | + | tig0018459:50047-50066 | Msa1366460:CDS | 50.0% | |
| ! | TTCAAGGAGACCGGGTATTG+TGG | + | tig0018459:50055-50074 | Msa1366460:CDS | 50.0% |
| TGCAAGTTTCTTCACGACCG+AGG | + | tig0018459:50091-50110 | Msa1366460:CDS | 50.0% | |
| TTCTTTGTCCAACTGCCACC+CGG | - | tig0018459:50128-50147 | None:intergenic | 50.0% | |
| GGTGGCAGTTGGACAAAGAA+TGG | + | tig0018459:50128-50147 | Msa1366460:CDS | 50.0% | |
| GAATGAAGCCGAGAAGAGGA+GGG | + | tig0018459:50150-50169 | Msa1366460:CDS | 50.0% | |
| ! | AGAAACCTAACCTGCTGGCT+GGG | - | tig0018459:49542-49561 | None:intergenic | 50.0% |
| AAGAAACCTAACCTGCTGGC+TGG | - | tig0018459:49543-49562 | None:intergenic | 50.0% | |
| AACCCACACACTGAAGAAGC+AGG | - | tig0018459:49704-49723 | None:intergenic | 50.0% | |
| GCAAAGACTTCAAGGAGACC+GGG | + | tig0018459:50047-50066 | Msa1366460:CDS | 50.0% | |
| ! | TTCAAGGAGACCGGGTATTG+TGG | + | tig0018459:50055-50074 | Msa1366460:CDS | 50.0% |
| TGCAAGTTTCTTCACGACCG+AGG | + | tig0018459:50091-50110 | Msa1366460:CDS | 50.0% | |
| TTCTTTGTCCAACTGCCACC+CGG | - | tig0018459:50128-50147 | None:intergenic | 50.0% | |
| GGTGGCAGTTGGACAAAGAA+TGG | + | tig0018459:50128-50147 | Msa1366460:CDS | 50.0% | |
| GAATGAAGCCGAGAAGAGGA+GGG | + | tig0018459:50150-50169 | Msa1366460:CDS | 50.0% | |
| ! | CTGCTGGCTGGGTACTGTTA+AGG | - | tig0018459:49531-49550 | None:intergenic | 55.0% |
| CTTAACAGTACCCAGCCAGC+AGG | + | tig0018459:49529-49548 | Msa1366460:five_prime_UTR | 55.0% | |
| ATCCGTGGGTCACACTCACA+CGG | + | tig0018459:49962-49981 | Msa1366460:CDS | 55.0% | |
| ! | GAGACCGGGTATTGTGGCTA+CGG | + | tig0018459:50061-50080 | Msa1366460:CDS | 55.0% |
| ATCGCCGTAGCCACAATACC+CGG | - | tig0018459:50068-50087 | None:intergenic | 55.0% | |
| GACCGAGGCGATTACAAGTC+CGG | + | tig0018459:50106-50125 | Msa1366460:CDS | 55.0% | |
| ACCGAGGCGATTACAAGTCC+GGG | + | tig0018459:50107-50126 | Msa1366460:CDS | 55.0% | |
| ACCCGGACTTGTAATCGCCT+CGG | - | tig0018459:50111-50130 | None:intergenic | 55.0% | |
| TTACAAGTCCGGGTGGCAGT+TGG | + | tig0018459:50117-50136 | Msa1366460:CDS | 55.0% | |
| GGAATGAAGCCGAGAAGAGG+AGG | + | tig0018459:50149-50168 | Msa1366460:CDS | 55.0% | |
| ! | CTGCTGGCTGGGTACTGTTA+AGG | - | tig0018459:49531-49550 | None:intergenic | 55.0% |
| CTTAACAGTACCCAGCCAGC+AGG | + | tig0018459:49529-49548 | Msa1366460:five_prime_UTR | 55.0% | |
| ATCCGTGGGTCACACTCACA+CGG | + | tig0018459:49962-49981 | Msa1366460:CDS | 55.0% | |
| ! | GAGACCGGGTATTGTGGCTA+CGG | + | tig0018459:50061-50080 | Msa1366460:CDS | 55.0% |
| ATCGCCGTAGCCACAATACC+CGG | - | tig0018459:50068-50087 | None:intergenic | 55.0% | |
| GACCGAGGCGATTACAAGTC+CGG | + | tig0018459:50106-50125 | Msa1366460:CDS | 55.0% | |
| ACCGAGGCGATTACAAGTCC+GGG | + | tig0018459:50107-50126 | Msa1366460:CDS | 55.0% | |
| ACCCGGACTTGTAATCGCCT+CGG | - | tig0018459:50111-50130 | None:intergenic | 55.0% | |
| TTACAAGTCCGGGTGGCAGT+TGG | + | tig0018459:50117-50136 | Msa1366460:CDS | 55.0% | |
| GGAATGAAGCCGAGAAGAGG+AGG | + | tig0018459:50149-50168 | Msa1366460:CDS | 55.0% | |
| CAGTACCCAGCCAGCAGGTT+AGG | + | tig0018459:49534-49553 | Msa1366460:intron | 60.0% | |
| GTGTGAGTGTGACCCACGGA+TGG | - | tig0018459:49963-49982 | None:intergenic | 60.0% | |
| GACCGTGTGAGTGTGACCCA+CGG | - | tig0018459:49967-49986 | None:intergenic | 60.0% | |
| GAGGCGATTACAAGTCCGGG+TGG | + | tig0018459:50110-50129 | Msa1366460:CDS | 60.0% | |
| TCAGCGCACCCTCCTCTTCT+CGG | - | tig0018459:50161-50180 | None:intergenic | 60.0% | |
| CAGTACCCAGCCAGCAGGTT+AGG | + | tig0018459:49534-49553 | Msa1366460:intron | 60.0% | |
| GTGTGAGTGTGACCCACGGA+TGG | - | tig0018459:49963-49982 | None:intergenic | 60.0% | |
| GACCGTGTGAGTGTGACCCA+CGG | - | tig0018459:49967-49986 | None:intergenic | 60.0% | |
| GAGGCGATTACAAGTCCGGG+TGG | + | tig0018459:50110-50129 | Msa1366460:CDS | 60.0% | |
| TCAGCGCACCCTCCTCTTCT+CGG | - | tig0018459:50161-50180 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0018459 | gene | 49384 | 50180 | 49384 | ID=Msa1366460;Name=Msa1366460 |
| tig0018459 | mRNA | 49384 | 50180 | 49384 | ID=Msa1366460-mRNA-1;Parent=Msa1366460;Name=Msa1366460-mRNA-1;_AED=0.23;_eAED=0.26;_QI=176|0|0.5|1|0|0.5|2|0|167 |
| tig0018459 | exon | 49384 | 49550 | 49384 | ID=Msa1366460-mRNA-1:exon:15166;Parent=Msa1366460-mRNA-1 |
| tig0018459 | exon | 49668 | 50180 | 49668 | ID=Msa1366460-mRNA-1:exon:15167;Parent=Msa1366460-mRNA-1 |
| tig0018459 | five_prime_UTR | 49384 | 49550 | 49384 | ID=Msa1366460-mRNA-1:five_prime_utr;Parent=Msa1366460-mRNA-1 |
| tig0018459 | five_prime_UTR | 49668 | 49676 | 49668 | ID=Msa1366460-mRNA-1:five_prime_utr;Parent=Msa1366460-mRNA-1 |
| tig0018459 | CDS | 49677 | 50180 | 49677 | ID=Msa1366460-mRNA-1:cds;Parent=Msa1366460-mRNA-1 |
| Gene Sequence |
| Protein sequence |
