Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1367970 | KEH27239.1 | 77.970 | 404 | 45 | 3 | 81 | 482 | 1 | 362 | 0.0 | 624 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1367970 | sp|Q9SZL8|FRS5_ARATH | 26.756 | 299 | 190 | 7 | 52 | 343 | 74 | 350 | 2.27e-24 | 112 |
| Msa1367970 | sp|Q9SZL8|FRS5_ARATH | 25.000 | 216 | 126 | 6 | 335 | 532 | 440 | 637 | 2.19e-12 | 73.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1367970 | A0A072UBP1 | 77.970 | 404 | 45 | 3 | 81 | 482 | 1 | 362 | 0.0 | 624 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1367970 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1367970 | MtrunA17_Chr3g0088371 | 89.216 | 102 | 11 | 0 | 485 | 586 | 1 | 102 | 1.23e-57 | 192 |
| Msa1367970 | MtrunA17_Chr1g0172971 | 76.515 | 132 | 16 | 1 | 1 | 132 | 1 | 117 | 2.93e-56 | 199 |
| Msa1367970 | MtrunA17_Chr6g0475591 | 95.890 | 73 | 3 | 0 | 204 | 276 | 1 | 73 | 4.12e-43 | 149 |
| Msa1367970 | MtrunA17_Chr7g0258861 | 32.463 | 268 | 159 | 5 | 46 | 310 | 2 | 250 | 2.96e-38 | 144 |
| Msa1367970 | MtrunA17_Chr2g0324011 | 29.801 | 302 | 187 | 7 | 47 | 343 | 3 | 284 | 3.27e-32 | 132 |
| Msa1367970 | MtrunA17_Chr2g0324011 | 27.426 | 237 | 140 | 7 | 310 | 532 | 353 | 571 | 4.51e-19 | 91.3 |
| Msa1367970 | MtrunA17_Chr3g0082121 | 28.369 | 282 | 184 | 6 | 311 | 587 | 380 | 648 | 1.68e-30 | 127 |
| Msa1367970 | MtrunA17_Chr3g0082121 | 29.252 | 294 | 177 | 8 | 57 | 347 | 49 | 314 | 4.50e-26 | 113 |
| Msa1367970 | MtrunA17_Chr5g0448761 | 26.000 | 300 | 201 | 6 | 53 | 347 | 62 | 345 | 4.88e-25 | 110 |
| Msa1367970 | MtrunA17_Chr1g0202341 | 26.936 | 297 | 195 | 6 | 53 | 347 | 53 | 329 | 6.70e-25 | 110 |
| Msa1367970 | MtrunA17_Chr1g0202341 | 29.148 | 223 | 138 | 7 | 315 | 529 | 399 | 609 | 3.16e-19 | 92.0 |
| Msa1367970 | MtrunA17_Chr2g0296781 | 26.910 | 301 | 190 | 7 | 55 | 351 | 1 | 275 | 1.53e-24 | 108 |
| Msa1367970 | MtrunA17_Chr2g0296781 | 25.806 | 279 | 169 | 10 | 313 | 571 | 338 | 598 | 5.44e-17 | 85.1 |
| Msa1367970 | MtrunA17_Chr1g0203721 | 25.157 | 318 | 187 | 8 | 21 | 310 | 11 | 305 | 1.98e-22 | 102 |
| Msa1367970 | MtrunA17_Chr1g0203721 | 25.994 | 327 | 203 | 12 | 293 | 601 | 394 | 699 | 9.66e-17 | 84.3 |
| Msa1367970 | MtrunA17_Chr8g0363841 | 26.774 | 310 | 198 | 9 | 56 | 360 | 22 | 307 | 2.29e-22 | 102 |
| Msa1367970 | MtrunA17_Chr8g0363841 | 28.448 | 232 | 144 | 4 | 311 | 532 | 361 | 580 | 1.88e-18 | 89.7 |
| Msa1367970 | MtrunA17_Chr1g0164591 | 29.902 | 204 | 130 | 4 | 147 | 347 | 1 | 194 | 1.11e-21 | 96.7 |
| Msa1367970 | MtrunA17_Chr5g0441581 | 23.580 | 352 | 224 | 9 | 39 | 388 | 25 | 333 | 5.61e-19 | 91.3 |
| Msa1367970 | MtrunA17_Chr5g0441581 | 27.203 | 261 | 159 | 8 | 338 | 581 | 387 | 633 | 2.08e-17 | 86.3 |
| Msa1367970 | MtrunA17_Chr2g0287651 | 26.190 | 294 | 192 | 6 | 21 | 310 | 45 | 317 | 3.87e-18 | 89.0 |
| Msa1367970 | MtrunA17_Chr2g0287651 | 23.009 | 226 | 147 | 5 | 316 | 529 | 422 | 632 | 3.47e-11 | 66.6 |
| Msa1367970 | MtrunA17_Chr1g0207551 | 24.903 | 257 | 170 | 4 | 338 | 585 | 399 | 641 | 1.68e-17 | 86.7 |
| Msa1367970 | MtrunA17_Chr3g0080351 | 26.599 | 297 | 172 | 11 | 307 | 585 | 407 | 675 | 2.06e-17 | 86.7 |
| Msa1367970 | MtrunA17_Chr6g0477261 | 30.323 | 155 | 106 | 1 | 196 | 348 | 7 | 161 | 3.32e-17 | 85.5 |
| Msa1367970 | MtrunA17_Chr6g0477261 | 25.448 | 279 | 170 | 10 | 313 | 571 | 227 | 487 | 7.33e-17 | 84.3 |
| Msa1367970 | MtrunA17_Chr6g0458391 | 27.626 | 257 | 143 | 7 | 57 | 310 | 231 | 447 | 1.81e-16 | 83.6 |
| Msa1367970 | MtrunA17_Chr1g0196541 | 23.077 | 338 | 223 | 8 | 55 | 388 | 1 | 305 | 4.73e-16 | 82.0 |
| Msa1367970 | MtrunA17_Chr1g0198761 | 24.290 | 317 | 213 | 8 | 37 | 343 | 33 | 332 | 1.88e-14 | 77.0 |
| Msa1367970 | MtrunA17_Chr5g0431001 | 24.138 | 348 | 230 | 11 | 29 | 366 | 39 | 362 | 2.92e-14 | 75.9 |
| Msa1367970 | MtrunA17_Chr1g0203051 | 23.673 | 245 | 168 | 3 | 66 | 310 | 94 | 319 | 4.74e-14 | 75.5 |
| Msa1367970 | MtrunA17_Chr2g0329031 | 24.490 | 196 | 136 | 3 | 335 | 525 | 369 | 557 | 1.63e-13 | 73.9 |
| Msa1367970 | MtrunA17_Chr2g0329031 | 24.606 | 317 | 193 | 12 | 33 | 343 | 3 | 279 | 1.35e-12 | 70.9 |
| Msa1367970 | MtrunA17_Chr2g0290391 | 25.455 | 275 | 168 | 9 | 45 | 303 | 44 | 297 | 5.06e-13 | 72.4 |
| Msa1367970 | MtrunA17_Chr2g0291591 | 25.461 | 271 | 152 | 11 | 53 | 310 | 66 | 299 | 6.30e-13 | 71.6 |
| Msa1367970 | MtrunA17_Chr2g0276841 | 23.695 | 249 | 170 | 6 | 65 | 310 | 84 | 315 | 1.65e-12 | 70.9 |
| Msa1367970 | MtrunA17_Chr5g0440451 | 22.857 | 280 | 193 | 8 | 315 | 586 | 396 | 660 | 2.28e-12 | 70.5 |
| Msa1367970 | MtrunA17_Chr3g0118611 | 24.723 | 271 | 157 | 10 | 338 | 586 | 312 | 557 | 6.78e-12 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1367970 | AT4G38180.1 | 26.756 | 299 | 190 | 7 | 52 | 343 | 74 | 350 | 2.31e-25 | 112 |
| Msa1367970 | AT4G38180.1 | 25.000 | 216 | 126 | 6 | 335 | 532 | 440 | 637 | 2.22e-13 | 73.9 |
| Msa1367970 | AT4G15090.1 | 27.113 | 284 | 178 | 7 | 311 | 585 | 398 | 661 | 2.49e-22 | 102 |
| Msa1367970 | AT4G15090.5 | 27.113 | 284 | 178 | 7 | 311 | 585 | 398 | 661 | 2.49e-22 | 102 |
| Msa1367970 | AT4G15090.3 | 27.113 | 284 | 178 | 7 | 311 | 585 | 398 | 661 | 2.49e-22 | 102 |
| Msa1367970 | AT4G15090.2 | 27.113 | 284 | 178 | 7 | 311 | 585 | 398 | 661 | 2.49e-22 | 102 |
| Msa1367970 | AT4G15090.4 | 27.113 | 284 | 178 | 7 | 311 | 585 | 398 | 661 | 2.49e-22 | 102 |
| Msa1367970 | AT4G19990.5 | 25.781 | 256 | 166 | 7 | 315 | 561 | 348 | 588 | 2.84e-17 | 86.3 |
| Msa1367970 | AT4G19990.1 | 25.781 | 256 | 166 | 7 | 315 | 561 | 291 | 531 | 3.04e-17 | 86.3 |
| Msa1367970 | AT4G19990.7 | 25.781 | 256 | 166 | 7 | 315 | 561 | 362 | 602 | 3.06e-17 | 86.3 |
| Msa1367970 | AT4G19990.3 | 25.781 | 256 | 166 | 7 | 315 | 561 | 348 | 588 | 3.21e-17 | 86.3 |
| Msa1367970 | AT4G19990.4 | 25.781 | 256 | 166 | 7 | 315 | 561 | 348 | 588 | 3.21e-17 | 86.3 |
| Msa1367970 | AT4G19990.6 | 25.781 | 256 | 166 | 7 | 315 | 561 | 348 | 588 | 4.08e-17 | 85.9 |
| Msa1367970 | AT4G19990.2 | 25.781 | 256 | 166 | 7 | 315 | 561 | 348 | 588 | 4.08e-17 | 85.9 |
| Msa1367970 | AT3G22170.2 | 26.104 | 249 | 156 | 7 | 335 | 572 | 425 | 656 | 1.26e-15 | 81.3 |
| Msa1367970 | AT3G22170.1 | 26.104 | 249 | 156 | 7 | 335 | 572 | 425 | 656 | 1.26e-15 | 81.3 |
| Msa1367970 | AT5G28530.1 | 24.503 | 302 | 196 | 7 | 56 | 343 | 60 | 343 | 1.67e-15 | 80.9 |
| Msa1367970 | AT5G28530.3 | 24.503 | 302 | 196 | 7 | 56 | 343 | 60 | 343 | 1.96e-15 | 80.5 |
| Msa1367970 | AT5G28530.2 | 24.503 | 302 | 196 | 7 | 56 | 343 | 60 | 343 | 1.96e-15 | 80.5 |
| Msa1367970 | AT1G76320.3 | 27.477 | 222 | 144 | 5 | 313 | 529 | 335 | 544 | 2.41e-15 | 80.1 |
| Msa1367970 | AT1G76320.1 | 27.679 | 224 | 141 | 5 | 313 | 529 | 335 | 544 | 2.73e-15 | 80.1 |
| Msa1367970 | AT1G76320.4 | 27.679 | 224 | 141 | 5 | 313 | 529 | 335 | 544 | 2.73e-15 | 80.1 |
| Msa1367970 | AT1G76320.2 | 27.679 | 224 | 141 | 5 | 313 | 529 | 335 | 544 | 2.89e-15 | 80.1 |
| Msa1367970 | AT1G10240.2 | 22.556 | 266 | 186 | 7 | 48 | 310 | 45 | 293 | 3.98e-12 | 69.7 |
| Msa1367970 | AT1G10240.1 | 22.556 | 266 | 186 | 7 | 48 | 310 | 45 | 293 | 3.98e-12 | 69.7 |
Find 77 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTAGTCATTTCAACATTA+TGG | 0.194287 | tig0018581:+107487 | Msa1367970:CDS |
| TTTCTGTAACTTGGTGCTTT+TGG | 0.264317 | tig0018581:+108365 | Msa1367970:CDS |
| TCTGATGTTGTCCTGTTGTT+AGG | 0.288908 | tig0018581:-105769 | None:intergenic |
| GGTAATTATGCATATAAAAC+TGG | 0.302948 | tig0018581:+105625 | Msa1367970:CDS |
| CGATCATGATCTTCAAAACT+TGG | 0.305304 | tig0018581:-107827 | None:intergenic |
| TTACTTCTCGAAATGATCTA+AGG | 0.311482 | tig0018581:-105960 | None:intergenic |
| CAACTAGATTATTCTCTATT+CGG | 0.323831 | tig0018581:+106276 | Msa1367970:CDS |
| GCCGATATTTATTGTTTGTT+CGG | 0.341758 | tig0018581:-106326 | None:intergenic |
| GAAGGCCTACTTCAGACTTT+AGG | 0.375686 | tig0018581:+107312 | Msa1367970:CDS |
| GAGGGATAATCATGCTGAAT+TGG | 0.376108 | tig0018581:+107520 | Msa1367970:CDS |
| AACAATAAATATCGGCCATT+AGG | 0.388497 | tig0018581:+106333 | Msa1367970:CDS |
| ACCGAACAAACAATAAATAT+CGG | 0.389395 | tig0018581:+106325 | Msa1367970:CDS |
| TACACGTGTTTGTGCAGATT+CGG | 0.390328 | tig0018581:+108147 | Msa1367970:CDS |
| GAGAACGTCTTATGAAGTTA+TGG | 0.394356 | tig0018581:+106035 | Msa1367970:CDS |
| TCATGCTGAATTGGACTTCA+AGG | 0.399206 | tig0018581:+107529 | Msa1367970:CDS |
| ATGTGTATAAGATATATAGA+TGG | 0.407680 | tig0018581:+105890 | Msa1367970:CDS |
| CATGTCGTATGTTTGAGAAC+AGG | 0.415108 | tig0018581:+107903 | Msa1367970:CDS |
| GAAGTTATGGGTCAAGGAGT+TGG | 0.428685 | tig0018581:+106048 | Msa1367970:CDS |
| CGAGAAGTAAATGAAGTTCA+AGG | 0.430014 | tig0018581:+105973 | Msa1367970:CDS |
| ACAAAATAAGAAATTTGATA+AGG | 0.431852 | tig0018581:+105687 | Msa1367970:CDS |
| GAAAGGGTTGGTTGTAAAGC+TGG | 0.447509 | tig0018581:+105838 | Msa1367970:CDS |
| CTACACGGTGTTCTTGAAGC+TGG | 0.449082 | tig0018581:+108187 | Msa1367970:CDS |
| AACCGCATCAGCTGACTGTT+AGG | 0.450316 | tig0018581:-107581 | None:intergenic |
| TATGCATTGGTCTTCAGCTT+GGG | 0.450920 | tig0018581:+107361 | Msa1367970:CDS |
| GTGATATCATTTCTGTAACT+TGG | 0.453435 | tig0018581:+108356 | Msa1367970:CDS |
| GCTCTTATAAATTCTAAAGC+TGG | 0.462891 | tig0018581:+106003 | Msa1367970:CDS |
| TCCATGATACTTTATTGCTA+GGG | 0.464004 | tig0018581:-105558 | None:intergenic |
| AGAACGTCTTATGAAGTTAT+GGG | 0.466325 | tig0018581:+106036 | Msa1367970:CDS |
| GTTTGCTTAATCCTAACAAC+AGG | 0.467124 | tig0018581:+105758 | Msa1367970:CDS |
| CGCTTTAAAACATATTGTCC+AGG | 0.471916 | tig0018581:-108004 | None:intergenic |
| TTGAAGATCTTGGAGTTCCT+AGG | 0.473596 | tig0018581:+107947 | Msa1367970:CDS |
| ATCATGATCGATTTGATGAA+AGG | 0.476999 | tig0018581:+107840 | Msa1367970:CDS |
| TACACGGTGTTCTTGAAGCT+GGG | 0.478647 | tig0018581:+108188 | Msa1367970:CDS |
| GTATGCATTGGTCTTCAGCT+TGG | 0.479582 | tig0018581:+107360 | Msa1367970:CDS |
| TTTAAGTCTGAAAACCGAAA+AGG | 0.483010 | tig0018581:-106087 | None:intergenic |
| TTCCATGATACTTTATTGCT+AGG | 0.489989 | tig0018581:-105559 | None:intergenic |
| ACATTATGGTTCAGAGAATG+AGG | 0.494022 | tig0018581:+107501 | Msa1367970:CDS |
| CGTTATGTTTGTAACAAACA+AGG | 0.494754 | tig0018581:+105721 | Msa1367970:CDS |
| AGCTGGAATATCTTTGAAGC+TGG | 0.496270 | tig0018581:+105855 | Msa1367970:CDS |
| CCCCTAGCAATAAAGTATCA+TGG | 0.498381 | tig0018581:+105557 | Msa1367970:CDS |
| CTAAGGTAACATGAATGCTC+TGG | 0.504903 | tig0018581:-105943 | None:intergenic |
| TAACAAACAAGGTTTCAAGA+AGG | 0.511682 | tig0018581:+105732 | Msa1367970:CDS |
| TGCTTCTAAAACATCAACAT+TGG | 0.513630 | tig0018581:-107783 | None:intergenic |
| GAATGCTCTGGTTTATGTAA+TGG | 0.517705 | tig0018581:-105931 | None:intergenic |
| TTACAACCAACCCTTTCCTC+CGG | 0.518116 | tig0018581:-105832 | None:intergenic |
| TGTCTTCTGTAGCATCAACT+TGG | 0.520245 | tig0018581:-106221 | None:intergenic |
| TGTGTATAAGATATATAGAT+GGG | 0.523615 | tig0018581:+105891 | Msa1367970:CDS |
| GAAGATTATATGAATGTGCT+AGG | 0.531971 | tig0018581:-108315 | None:intergenic |
| GGCCTACTTCAGACTTTAGG+TGG | 0.536366 | tig0018581:+107315 | Msa1367970:CDS |
| AACAAACAAGGTTTCAAGAA+GGG | 0.554561 | tig0018581:+105733 | Msa1367970:CDS |
| TTCACAAACTCAATAACCAA+TGG | 0.554620 | tig0018581:-105796 | None:intergenic |
| TAAAGAATAGAACAAGTGAA+TGG | 0.555459 | tig0018581:-107469 | None:intergenic |
| GGAGTAACATTGAGAACTAT+CGG | 0.556951 | tig0018581:-105536 | None:intergenic |
| CTTACGAAAATCGTATGCAT+TGG | 0.559732 | tig0018581:+107348 | Msa1367970:CDS |
| ATGTCGTATGTTTGAGAACA+GGG | 0.560861 | tig0018581:+107904 | Msa1367970:CDS |
| CCATGATACTTTATTGCTAG+GGG | 0.563054 | tig0018581:-105557 | None:intergenic |
| GATCATGATCTTCAAAACTT+GGG | 0.567815 | tig0018581:-107826 | None:intergenic |
| GTCTTCAGTGCCAACATGGA+TGG | 0.576478 | tig0018581:-108071 | None:intergenic |
| GTTATGGGTCAAGGAGTTGG+AGG | 0.578191 | tig0018581:+106051 | Msa1367970:CDS |
| TCTAAAACATCAACATTGGA+AGG | 0.579248 | tig0018581:-107779 | None:intergenic |
| TTACTGATTCATGCTGAGAG+TGG | 0.579535 | tig0018581:+105478 | Msa1367970:CDS |
| TCTTATGAAGTTATGGGTCA+AGG | 0.580120 | tig0018581:+106042 | Msa1367970:CDS |
| ATCCTAACAGTCAGCTGATG+CGG | 0.594920 | tig0018581:+107579 | Msa1367970:CDS |
| TATGATGATGCTGATAATGA+CGG | 0.599988 | tig0018581:+107755 | Msa1367970:CDS |
| TTGATATCGTTGTGCTTGAG+TGG | 0.601464 | tig0018581:-108095 | None:intergenic |
| GACAACATCAGACAGTCCAT+TGG | 0.604607 | tig0018581:+105780 | Msa1367970:CDS |
| CTGAAATCGACCATCCATGT+TGG | 0.607729 | tig0018581:+108061 | Msa1367970:CDS |
| ATATCAACTTCATCTGAGAG+TGG | 0.614980 | tig0018581:+105433 | Msa1367970:CDS |
| ACGTGTTTGTGCAGATTCGG+AGG | 0.616020 | tig0018581:+108150 | Msa1367970:CDS |
| ATGATGATGCTGATAATGAC+GGG | 0.620534 | tig0018581:+107756 | Msa1367970:CDS |
| AGCCACCTAAAGTCTGAAGT+AGG | 0.632459 | tig0018581:-107317 | None:intergenic |
| CATTATGGTTCAGAGAATGA+GGG | 0.643278 | tig0018581:+107502 | Msa1367970:CDS |
| GATATTGCACATGACCACCT+AGG | 0.647490 | tig0018581:-107964 | None:intergenic |
| TGGTGTCTTCAGTGCCAACA+TGG | 0.650133 | tig0018581:-108075 | None:intergenic |
| GATTTCAGCTTATCGACAGA+CGG | 0.652942 | tig0018581:-108046 | None:intergenic |
| TGTCGTATGTTTGAGAACAG+GGG | 0.653807 | tig0018581:+107905 | Msa1367970:CDS |
| AAGATCTTGGAGTTCCTAGG+TGG | 0.662062 | tig0018581:+107950 | Msa1367970:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAAAATAAGAAATTTGATA+AGG | + | tig0018581:105687-105706 | Msa1367970:CDS | 15.0% |
| !!! | ATGATGAAAAATTGTTTTAA+TGG | + | tig0018581:107290-107309 | Msa1367970:CDS | 15.0% |
| !!! | AAAGAGATTGAAGATTTTTA+TGG | + | tig0018581:105604-105623 | Msa1367970:CDS | 20.0% |
| !!! | ATAAAACTGGATTTTCTATT+AGG | + | tig0018581:105638-105657 | Msa1367970:CDS | 20.0% |
| !! | ATGTGTATAAGATATATAGA+TGG | + | tig0018581:105890-105909 | Msa1367970:CDS | 20.0% |
| !! | TGTGTATAAGATATATAGAT+GGG | + | tig0018581:105891-105910 | Msa1367970:CDS | 20.0% |
| !! | AAAAATAAACACTAACCTAA+TGG | - | tig0018581:106351-106370 | None:intergenic | 20.0% |
| !!! | CATGTTGTAATTTTTTTTTC+TGG | + | tig0018581:106421-106440 | Msa1367970:intron | 20.0% |
| !! | ACATACTTATTAGAATACTT+AGG | + | tig0018581:106711-106730 | Msa1367970:intron | 20.0% |
| !!! | AATCAGATTTTGACTATAAT+TGG | + | tig0018581:107261-107280 | Msa1367970:CDS | 20.0% |
| !!! | ATCAGATTTTGACTATAATT+GGG | + | tig0018581:107262-107281 | Msa1367970:CDS | 20.0% |
| !!! | TGAAAAATTGTTTTAATGGA+AGG | + | tig0018581:107294-107313 | Msa1367970:CDS | 20.0% |
| !!! | CTAAGTTTTTACAATTGAAA+AGG | + | tig0018581:107721-107740 | Msa1367970:intron | 20.0% |
| ! | GGTAATTATGCATATAAAAC+TGG | + | tig0018581:105625-105644 | Msa1367970:CDS | 25.0% |
| ! | TGGATATCATAGTAAAAAGA+TGG | - | tig0018581:106204-106223 | None:intergenic | 25.0% |
| !!! | AAGACATAGCTAGTATTTTT+TGG | + | tig0018581:106238-106257 | Msa1367970:CDS | 25.0% |
| !!! | AGACATAGCTAGTATTTTTT+GGG | + | tig0018581:106239-106258 | Msa1367970:CDS | 25.0% |
| ! | CAACTAGATTATTCTCTATT+CGG | + | tig0018581:106276-106295 | Msa1367970:CDS | 25.0% |
| ! | ACCGAACAAACAATAAATAT+CGG | + | tig0018581:106325-106344 | Msa1367970:CDS | 25.0% |
| !! | TTACTTTCATTAAGTTGTTC+TGG | + | tig0018581:106398-106417 | Msa1367970:intron | 25.0% |
| ! | CAAACTTAAATGATGTTGAT+TGG | + | tig0018581:106614-106633 | Msa1367970:intron | 25.0% |
| !!! | ATTTATATTTTGAACTGCCT+AGG | + | tig0018581:106638-106657 | Msa1367970:intron | 25.0% |
| ! | ATGATTGTCAAAACCAATAA+AGG | - | tig0018581:106954-106973 | None:intergenic | 25.0% |
| ! | TAAAGAATAGAACAAGTGAA+TGG | - | tig0018581:107472-107491 | None:intergenic | 25.0% |
| ! | CTTTAGTCATTTCAACATTA+TGG | + | tig0018581:107487-107506 | Msa1367970:CDS | 25.0% |
| ! | CATAATAGTATTTGAAGGAA+AGG | - | tig0018581:107661-107680 | None:intergenic | 25.0% |
| ! | TTCCTTCAAATACTATTATG+AGG | + | tig0018581:107661-107680 | Msa1367970:intron | 25.0% |
| !!! | ATTATGTTTTTGCTTGATGT+TGG | - | tig0018581:108226-108245 | None:intergenic | 25.0% |
| TCCATGATACTTTATTGCTA+GGG | - | tig0018581:105561-105580 | None:intergenic | 30.0% | |
| TTCCATGATACTTTATTGCT+AGG | - | tig0018581:105562-105581 | None:intergenic | 30.0% | |
| CGTTATGTTTGTAACAAACA+AGG | + | tig0018581:105721-105740 | Msa1367970:CDS | 30.0% | |
| TAACAAACAAGGTTTCAAGA+AGG | + | tig0018581:105732-105751 | Msa1367970:CDS | 30.0% | |
| AACAAACAAGGTTTCAAGAA+GGG | + | tig0018581:105733-105752 | Msa1367970:CDS | 30.0% | |
| TTCACAAACTCAATAACCAA+TGG | - | tig0018581:105799-105818 | None:intergenic | 30.0% | |
| TGTGAAAGTGAAAGAAAAAC+CGG | + | tig0018581:105813-105832 | Msa1367970:CDS | 30.0% | |
| TTACTTCTCGAAATGATCTA+AGG | - | tig0018581:105963-105982 | None:intergenic | 30.0% | |
| !! | GCTCTTATAAATTCTAAAGC+TGG | + | tig0018581:106003-106022 | Msa1367970:CDS | 30.0% |
| AGAACGTCTTATGAAGTTAT+GGG | + | tig0018581:106036-106055 | Msa1367970:CDS | 30.0% | |
| TTTAAGTCTGAAAACCGAAA+AGG | - | tig0018581:106090-106109 | None:intergenic | 30.0% | |
| GCCGATATTTATTGTTTGTT+CGG | - | tig0018581:106329-106348 | None:intergenic | 30.0% | |
| AACAATAAATATCGGCCATT+AGG | + | tig0018581:106333-106352 | Msa1367970:CDS | 30.0% | |
| AGTTCCTACTTGTTTGTTTA+GGG | + | tig0018581:106515-106534 | Msa1367970:intron | 30.0% | |
| AAATCCCTAAACAAACAAGT+AGG | - | tig0018581:106522-106541 | None:intergenic | 30.0% | |
| TTGTCTAAGTAAAAATGCCT+AGG | - | tig0018581:106658-106677 | None:intergenic | 30.0% | |
| AGACTAGCAATGACTAATTA+AGG | + | tig0018581:106794-106813 | Msa1367970:intron | 30.0% | |
| GACTAGCAATGACTAATTAA+GGG | + | tig0018581:106795-106814 | Msa1367970:intron | 30.0% | |
| TAAATTTCAGCTGCCTTTAT+TGG | + | tig0018581:106938-106957 | Msa1367970:intron | 30.0% | |
| !!! | CATCGTAAGAGTGTTTTATT+TGG | + | tig0018581:106971-106990 | Msa1367970:intron | 30.0% |
| ! | TCAATTTCGAATAGTTTTCC+AGG | + | tig0018581:107118-107137 | Msa1367970:intron | 30.0% |
| ! | TTTTGACGAGGTAACTAATT+TGG | + | tig0018581:107220-107239 | Msa1367970:intron | 30.0% |
| ! | CATACGATTTTCGTAAGTTT+GGG | - | tig0018581:107345-107364 | None:intergenic | 30.0% |
| ! | TCTTTCAATGCTTTTCTTTG+TGG | + | tig0018581:107431-107450 | Msa1367970:CDS | 30.0% |
| CTCCTCATAATAGTATTTGA+AGG | - | tig0018581:107666-107685 | None:intergenic | 30.0% | |
| CTTCAAATACTATTATGAGG+AGG | + | tig0018581:107664-107683 | Msa1367970:intron | 30.0% | |
| ! | TATGATGATGCTGATAATGA+CGG | + | tig0018581:107755-107774 | Msa1367970:CDS | 30.0% |
| ! | TCTAAAACATCAACATTGGA+AGG | - | tig0018581:107782-107801 | None:intergenic | 30.0% |
| !! | TGCTTCTAAAACATCAACAT+TGG | - | tig0018581:107786-107805 | None:intergenic | 30.0% |
| GATCATGATCTTCAAAACTT+GGG | - | tig0018581:107829-107848 | None:intergenic | 30.0% | |
| !! | ATCATGATCGATTTGATGAA+AGG | + | tig0018581:107840-107859 | Msa1367970:CDS | 30.0% |
| !!! | CATTTTTTGAAGACAATACC+TGG | + | tig0018581:107986-108005 | Msa1367970:CDS | 30.0% |
| !!! | GACAATATGTTTTAAAGCGT+TGG | + | tig0018581:108008-108027 | Msa1367970:CDS | 30.0% |
| !!! | GCATCTGAATTTTTTCTACA+CGG | + | tig0018581:108172-108191 | Msa1367970:CDS | 30.0% |
| GAAGATTATATGAATGTGCT+AGG | - | tig0018581:108318-108337 | None:intergenic | 30.0% | |
| GTGATATCATTTCTGTAACT+TGG | + | tig0018581:108356-108375 | Msa1367970:CDS | 30.0% | |
| ATATCAACTTCATCTGAGAG+TGG | + | tig0018581:105433-105452 | Msa1367970:CDS | 35.0% | |
| GGAGTAACATTGAGAACTAT+CGG | - | tig0018581:105539-105558 | None:intergenic | 35.0% | |
| CCATGATACTTTATTGCTAG+GGG | - | tig0018581:105560-105579 | None:intergenic | 35.0% | |
| GTTTGCTTAATCCTAACAAC+AGG | + | tig0018581:105758-105777 | Msa1367970:CDS | 35.0% | |
| ! | GAATGCTCTGGTTTATGTAA+TGG | - | tig0018581:105934-105953 | None:intergenic | 35.0% |
| CGAGAAGTAAATGAAGTTCA+AGG | + | tig0018581:105973-105992 | Msa1367970:CDS | 35.0% | |
| GAGAACGTCTTATGAAGTTA+TGG | + | tig0018581:106035-106054 | Msa1367970:CDS | 35.0% | |
| TCTTATGAAGTTATGGGTCA+AGG | + | tig0018581:106042-106061 | Msa1367970:CDS | 35.0% | |
| GACAATTCGTCAAAAAGAGA+TGG | + | tig0018581:106122-106141 | Msa1367970:CDS | 35.0% | |
| AATTCGTCAAAAAGAGATGG+TGG | + | tig0018581:106125-106144 | Msa1367970:CDS | 35.0% | |
| !!! | GGCATGTTGTTTTTTTGTTC+TGG | + | tig0018581:106442-106461 | Msa1367970:intron | 35.0% |
| CTGGCATGTGTATTATAAGT+AGG | + | tig0018581:106461-106480 | Msa1367970:intron | 35.0% | |
| TAGGAACTGTAGTAAATCCT+AGG | - | tig0018581:106503-106522 | None:intergenic | 35.0% | |
| CAGTTCCTACTTGTTTGTTT+AGG | + | tig0018581:106514-106533 | Msa1367970:intron | 35.0% | |
| ! | ATTTTCTTGCTTCTGCCATT+TGG | + | tig0018581:106538-106557 | Msa1367970:intron | 35.0% |
| AAAAACCCCATGAAACCAAA+TGG | - | tig0018581:106556-106575 | None:intergenic | 35.0% | |
| !! | CATCTTTCAGGTTTGATATC+TGG | - | tig0018581:106586-106605 | None:intergenic | 35.0% |
| CAGATATCAAACCTGAAAGA+TGG | + | tig0018581:106584-106603 | Msa1367970:intron | 35.0% | |
| TTTGTCTCAAACCATCTTTC+AGG | - | tig0018581:106598-106617 | None:intergenic | 35.0% | |
| AGCAATGACTAATTAAGGGT+TGG | + | tig0018581:106799-106818 | Msa1367970:intron | 35.0% | |
| TGACTAATTAAGGGTTGGAT+TGG | + | tig0018581:106804-106823 | Msa1367970:intron | 35.0% | |
| !!! | AGATAGCAGCTACTTTTGAT+TGG | + | tig0018581:107014-107033 | Msa1367970:intron | 35.0% |
| AATCGTCTGTGGTTTCTTAT+TGG | - | tig0018581:107068-107087 | None:intergenic | 35.0% | |
| ! | AGTTTTCCAGGTGTTTTTCA+TGG | + | tig0018581:107130-107149 | Msa1367970:intron | 35.0% |
| ! | GTTTTCCAGGTGTTTTTCAT+GGG | + | tig0018581:107131-107150 | Msa1367970:intron | 35.0% |
| !!! | TTTTTCATGGGCTTTGTTCA+TGG | + | tig0018581:107143-107162 | Msa1367970:intron | 35.0% |
| GAGAATGCAAAGAAAAAGCT+TGG | + | tig0018581:107175-107194 | Msa1367970:intron | 35.0% | |
| !!! | AACAGTGCATTTTTTTGACG+AGG | + | tig0018581:107208-107227 | Msa1367970:intron | 35.0% |
| ! | GCATACGATTTTCGTAAGTT+TGG | - | tig0018581:107346-107365 | None:intergenic | 35.0% |
| CTTACGAAAATCGTATGCAT+TGG | + | tig0018581:107348-107367 | Msa1367970:CDS | 35.0% | |
| ACATTATGGTTCAGAGAATG+AGG | + | tig0018581:107501-107520 | Msa1367970:CDS | 35.0% | |
| CATTATGGTTCAGAGAATGA+GGG | + | tig0018581:107502-107521 | Msa1367970:CDS | 35.0% | |
| TGAATAAATGCAAAGCAAGC+TGG | - | tig0018581:107626-107645 | None:intergenic | 35.0% | |
| CTTGCTTTGCATTTATTCAC+AGG | + | tig0018581:107627-107646 | Msa1367970:intron | 35.0% | |
| ! | ATGATGATGCTGATAATGAC+GGG | + | tig0018581:107756-107775 | Msa1367970:CDS | 35.0% |
| CGATCATGATCTTCAAAACT+TGG | - | tig0018581:107830-107849 | None:intergenic | 35.0% | |
| ATGTCGTATGTTTGAGAACA+GGG | + | tig0018581:107904-107923 | Msa1367970:CDS | 35.0% | |
| !!! | TCGACATGTTTTGAAGATCT+TGG | + | tig0018581:107937-107956 | Msa1367970:CDS | 35.0% |
| !! | CGCTTTAAAACATATTGTCC+AGG | - | tig0018581:108007-108026 | None:intergenic | 35.0% |
| !!! | TTTCTGTAACTTGGTGCTTT+TGG | + | tig0018581:108365-108384 | Msa1367970:CDS | 35.0% |
| !! | TTACTGATTCATGCTGAGAG+TGG | + | tig0018581:105478-105497 | Msa1367970:CDS | 40.0% |
| ! | CCCCTAGCAATAAAGTATCA+TGG | + | tig0018581:105557-105576 | Msa1367970:CDS | 40.0% |
| TCTGATGTTGTCCTGTTGTT+AGG | - | tig0018581:105772-105791 | None:intergenic | 40.0% | |
| GAAAGTGAAAGAAAAACCGG+AGG | + | tig0018581:105816-105835 | Msa1367970:CDS | 40.0% | |
| TGAAAGAAAAACCGGAGGAA+AGG | + | tig0018581:105821-105840 | Msa1367970:CDS | 40.0% | |
| GAAAGAAAAACCGGAGGAAA+GGG | + | tig0018581:105822-105841 | Msa1367970:CDS | 40.0% | |
| !! | AGCTGGAATATCTTTGAAGC+TGG | + | tig0018581:105855-105874 | Msa1367970:CDS | 40.0% |
| CTAAGGTAACATGAATGCTC+TGG | - | tig0018581:105946-105965 | None:intergenic | 40.0% | |
| ! | GCACGAAGAATCTTCCTTTT+CGG | + | tig0018581:106073-106092 | Msa1367970:CDS | 40.0% |
| TGTCTTCTGTAGCATCAACT+TGG | - | tig0018581:106224-106243 | None:intergenic | 40.0% | |
| !!! | GCTAGTATTTTTTGGGCAGA+TGG | + | tig0018581:106246-106265 | Msa1367970:CDS | 40.0% |
| ! | GAGTACATTTTGAACTGCCT+AGG | + | tig0018581:106483-106502 | Msa1367970:intron | 40.0% |
| ! | CTTCTGCCATTTGGTTTCAT+GGG | + | tig0018581:106547-106566 | Msa1367970:intron | 40.0% |
| ! | TTCTGCCATTTGGTTTCATG+GGG | + | tig0018581:106548-106567 | Msa1367970:intron | 40.0% |
| CGATCACACAAGACAATTTC+AGG | - | tig0018581:106682-106701 | None:intergenic | 40.0% | |
| ATTGAGTTTACGCATTGCTG+AGG | + | tig0018581:106745-106764 | Msa1367970:intron | 40.0% | |
| TGGTCTGTATAAATCGTCTG+TGG | - | tig0018581:107079-107098 | None:intergenic | 40.0% | |
| ACAGACGATTTATACAGACC+AGG | + | tig0018581:107078-107097 | Msa1367970:intron | 40.0% | |
| !! | TATGCATTGGTCTTCAGCTT+GGG | + | tig0018581:107361-107380 | Msa1367970:CDS | 40.0% |
| ! | GTCAAGTCACATTTTACAGC+TGG | + | tig0018581:107383-107402 | Msa1367970:CDS | 40.0% |
| GAGGGATAATCATGCTGAAT+TGG | + | tig0018581:107520-107539 | Msa1367970:CDS | 40.0% | |
| TCATGCTGAATTGGACTTCA+AGG | + | tig0018581:107529-107548 | Msa1367970:CDS | 40.0% | |
| CATGTCGTATGTTTGAGAAC+AGG | + | tig0018581:107903-107922 | Msa1367970:CDS | 40.0% | |
| TGTCGTATGTTTGAGAACAG+GGG | + | tig0018581:107905-107924 | Msa1367970:CDS | 40.0% | |
| TTGAAGATCTTGGAGTTCCT+AGG | + | tig0018581:107947-107966 | Msa1367970:CDS | 40.0% | |
| GATTTCAGCTTATCGACAGA+CGG | - | tig0018581:108049-108068 | None:intergenic | 40.0% | |
| TTGATATCGTTGTGCTTGAG+TGG | - | tig0018581:108098-108117 | None:intergenic | 40.0% | |
| TACACGTGTTTGTGCAGATT+CGG | + | tig0018581:108147-108166 | Msa1367970:CDS | 40.0% | |
| GACAACATCAGACAGTCCAT+TGG | + | tig0018581:105780-105799 | Msa1367970:CDS | 45.0% | |
| TTACAACCAACCCTTTCCTC+CGG | - | tig0018581:105835-105854 | None:intergenic | 45.0% | |
| !! | GAAAGGGTTGGTTGTAAAGC+TGG | + | tig0018581:105838-105857 | Msa1367970:CDS | 45.0% |
| GAAGTTATGGGTCAAGGAGT+TGG | + | tig0018581:106048-106067 | Msa1367970:CDS | 45.0% | |
| ! | CGTCAAAAAGAGATGGTGGT+TGG | + | tig0018581:106129-106148 | Msa1367970:CDS | 45.0% |
| ! | GCTTCTGCCATTTGGTTTCA+TGG | + | tig0018581:106546-106565 | Msa1367970:intron | 45.0% |
| AACACAATAACGCACTAGCC+TGG | - | tig0018581:107099-107118 | None:intergenic | 45.0% | |
| CAAAGCCCATGAAAAACACC+TGG | - | tig0018581:107139-107158 | None:intergenic | 45.0% | |
| GAAGGCCTACTTCAGACTTT+AGG | + | tig0018581:107312-107331 | Msa1367970:CDS | 45.0% | |
| ! | AGCCACCTAAAGTCTGAAGT+AGG | - | tig0018581:107320-107339 | None:intergenic | 45.0% |
| !! | GTATGCATTGGTCTTCAGCT+TGG | + | tig0018581:107360-107379 | Msa1367970:CDS | 45.0% |
| ATCCTAACAGTCAGCTGATG+CGG | + | tig0018581:107579-107598 | Msa1367970:CDS | 45.0% | |
| TATGAGGAGGACACGACAAA+AGG | + | tig0018581:107677-107696 | Msa1367970:intron | 45.0% | |
| ATGAGGAGGACACGACAAAA+GGG | + | tig0018581:107678-107697 | Msa1367970:intron | 45.0% | |
| AAGATCTTGGAGTTCCTAGG+TGG | + | tig0018581:107950-107969 | Msa1367970:CDS | 45.0% | |
| GATATTGCACATGACCACCT+AGG | - | tig0018581:107967-107986 | None:intergenic | 45.0% | |
| CTGAAATCGACCATCCATGT+TGG | + | tig0018581:108061-108080 | Msa1367970:CDS | 45.0% | |
| TACACGGTGTTCTTGAAGCT+GGG | + | tig0018581:108188-108207 | Msa1367970:CDS | 45.0% | |
| GAAAAACCGGAGGAAAGGGT+TGG | + | tig0018581:105826-105845 | Msa1367970:CDS | 50.0% | |
| GTTATGGGTCAAGGAGTTGG+AGG | + | tig0018581:106051-106070 | Msa1367970:CDS | 50.0% | |
| !! | TGGGCTTTGTTCATGGCACA+TGG | + | tig0018581:107150-107169 | Msa1367970:intron | 50.0% |
| GGCCTACTTCAGACTTTAGG+TGG | + | tig0018581:107315-107334 | Msa1367970:CDS | 50.0% | |
| AACCGCATCAGCTGACTGTT+AGG | - | tig0018581:107584-107603 | None:intergenic | 50.0% | |
| GTCTTCAGTGCCAACATGGA+TGG | - | tig0018581:108074-108093 | None:intergenic | 50.0% | |
| TGGTGTCTTCAGTGCCAACA+TGG | - | tig0018581:108078-108097 | None:intergenic | 50.0% | |
| ACGTGTTTGTGCAGATTCGG+AGG | + | tig0018581:108150-108169 | Msa1367970:CDS | 50.0% | |
| CTACACGGTGTTCTTGAAGC+TGG | + | tig0018581:108187-108206 | Msa1367970:CDS | 50.0% | |
| CACGACAAAAGGGTCTGCGT+TGG | + | tig0018581:107688-107707 | Msa1367970:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0018581 | gene | 105424 | 108390 | 105424 | ID=Msa1367970;Name=Msa1367970 |
| tig0018581 | mRNA | 105424 | 108390 | 105424 | ID=Msa1367970-mRNA-1;Parent=Msa1367970;Name=Msa1367970-mRNA-1;_AED=0.08;_eAED=0.12;_QI=0|0|0|1|1|1|3|0|643 |
| tig0018581 | exon | 105424 | 106354 | 105424 | ID=Msa1367970-mRNA-1:exon:249;Parent=Msa1367970-mRNA-1 |
| tig0018581 | exon | 107255 | 107607 | 107255 | ID=Msa1367970-mRNA-1:exon:250;Parent=Msa1367970-mRNA-1 |
| tig0018581 | exon | 107743 | 108390 | 107743 | ID=Msa1367970-mRNA-1:exon:251;Parent=Msa1367970-mRNA-1 |
| tig0018581 | CDS | 105424 | 106354 | 105424 | ID=Msa1367970-mRNA-1:cds;Parent=Msa1367970-mRNA-1 |
| tig0018581 | CDS | 107255 | 107607 | 107255 | ID=Msa1367970-mRNA-1:cds;Parent=Msa1367970-mRNA-1 |
| tig0018581 | CDS | 107743 | 108390 | 107743 | ID=Msa1367970-mRNA-1:cds;Parent=Msa1367970-mRNA-1 |
| Gene Sequence |
| Protein sequence |
