Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1370950 | XP_003592857.1 | 78.592 | 341 | 26 | 5 | 1 | 337 | 1 | 298 | 0.0 | 529 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1370950 | sp|Q9C6P5|RAVL2_ARATH | 49.091 | 330 | 125 | 6 | 33 | 336 | 22 | 334 | 4.92e-97 | 293 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1370950 | G7IB22 | 78.592 | 341 | 26 | 5 | 1 | 337 | 1 | 298 | 0.0 | 529 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1370950 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1370950 | MtrunA17_Chr1g0213701 | 78.592 | 341 | 26 | 5 | 1 | 337 | 1 | 298 | 0.0 | 529 |
| Msa1370950 | MtrunA17_Chr1g0198661 | 42.609 | 230 | 110 | 4 | 38 | 245 | 63 | 292 | 1.92e-53 | 180 |
| Msa1370950 | MtrunA17_Chr5g0422501 | 43.363 | 226 | 110 | 5 | 38 | 245 | 106 | 331 | 5.67e-49 | 169 |
| Msa1370950 | MtrunA17_Chr8g0345771 | 56.667 | 90 | 39 | 0 | 156 | 245 | 170 | 259 | 2.50e-28 | 114 |
| Msa1370950 | MtrunA17_Chr7g0276471 | 55.556 | 90 | 40 | 0 | 156 | 245 | 116 | 205 | 4.97e-28 | 113 |
| Msa1370950 | MtrunA17_Chr1g0178071 | 54.945 | 91 | 39 | 1 | 157 | 245 | 75 | 165 | 6.15e-28 | 111 |
| Msa1370950 | MtrunA17_Chr7g0266821 | 58.333 | 84 | 34 | 1 | 162 | 245 | 65 | 147 | 1.32e-26 | 107 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1370950 | AT1G50680.1 | 49.091 | 330 | 125 | 6 | 33 | 336 | 22 | 334 | 5.00e-98 | 293 |
| Msa1370950 | AT1G51120.1 | 54.804 | 281 | 98 | 7 | 33 | 285 | 41 | 320 | 1.00e-96 | 291 |
| Msa1370950 | AT3G25730.1 | 46.903 | 226 | 95 | 7 | 36 | 246 | 59 | 274 | 1.76e-54 | 181 |
| Msa1370950 | AT1G13260.1 | 43.836 | 219 | 115 | 2 | 36 | 246 | 59 | 277 | 2.79e-54 | 181 |
| Msa1370950 | AT1G25560.1 | 42.986 | 221 | 114 | 4 | 38 | 246 | 71 | 291 | 1.05e-51 | 175 |
| Msa1370950 | AT1G68840.2 | 42.791 | 215 | 115 | 4 | 38 | 245 | 64 | 277 | 2.80e-49 | 169 |
| Msa1370950 | AT1G68840.1 | 42.791 | 215 | 115 | 4 | 38 | 245 | 64 | 277 | 2.80e-49 | 169 |
| Msa1370950 | AT4G01500.1 | 55.769 | 104 | 43 | 2 | 156 | 259 | 34 | 134 | 3.61e-29 | 115 |
| Msa1370950 | AT1G01030.2 | 57.778 | 90 | 38 | 0 | 156 | 245 | 54 | 143 | 3.74e-29 | 115 |
| Msa1370950 | AT1G01030.1 | 57.778 | 90 | 38 | 0 | 156 | 245 | 54 | 143 | 4.57e-29 | 115 |
| Msa1370950 | AT2G46870.1 | 56.044 | 91 | 40 | 0 | 156 | 246 | 33 | 123 | 1.91e-28 | 112 |
| Msa1370950 | AT3G11580.1 | 55.000 | 100 | 34 | 2 | 157 | 245 | 28 | 127 | 5.11e-28 | 110 |
| Msa1370950 | AT3G11580.4 | 55.000 | 100 | 34 | 2 | 157 | 245 | 28 | 127 | 1.09e-27 | 108 |
| Msa1370950 | AT3G11580.2 | 55.000 | 100 | 34 | 2 | 157 | 245 | 28 | 127 | 1.09e-27 | 108 |
| Msa1370950 | AT3G11580.5 | 55.000 | 100 | 34 | 2 | 157 | 245 | 28 | 127 | 1.09e-27 | 108 |
| Msa1370950 | AT2G36080.4 | 54.348 | 92 | 39 | 1 | 157 | 245 | 37 | 128 | 1.25e-27 | 106 |
| Msa1370950 | AT2G36080.2 | 54.348 | 92 | 39 | 1 | 157 | 245 | 37 | 128 | 1.25e-27 | 106 |
| Msa1370950 | AT2G36080.3 | 54.348 | 92 | 39 | 1 | 157 | 245 | 37 | 128 | 1.63e-27 | 108 |
| Msa1370950 | AT2G36080.1 | 54.348 | 92 | 39 | 1 | 157 | 245 | 37 | 128 | 1.66e-27 | 108 |
| Msa1370950 | AT5G06250.4 | 51.515 | 99 | 38 | 1 | 157 | 245 | 45 | 143 | 6.91e-27 | 107 |
| Msa1370950 | AT5G06250.5 | 51.515 | 99 | 38 | 1 | 157 | 245 | 45 | 143 | 7.18e-27 | 107 |
| Msa1370950 | AT5G06250.2 | 51.515 | 99 | 38 | 1 | 157 | 245 | 45 | 143 | 8.76e-27 | 107 |
| Msa1370950 | AT5G06250.3 | 51.515 | 99 | 38 | 1 | 157 | 245 | 45 | 143 | 9.97e-27 | 107 |
| Msa1370950 | AT5G06250.1 | 51.515 | 99 | 38 | 1 | 157 | 245 | 45 | 143 | 1.32e-26 | 106 |
| Msa1370950 | AT3G61970.1 | 56.383 | 94 | 36 | 2 | 156 | 245 | 21 | 113 | 1.66e-26 | 107 |
| Msa1370950 | AT3G11580.3 | 55.000 | 100 | 34 | 2 | 157 | 245 | 28 | 127 | 8.38e-26 | 106 |
| Msa1370950 | AT1G35520.1 | 37.037 | 108 | 66 | 2 | 142 | 247 | 109 | 216 | 2.23e-11 | 65.5 |
Find 72 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTACTATTTGTCAAATTTAT+AGG | 0.145940 | tig0019144:-77432 | None:intergenic |
| GGCAAAGAATGTGTTATTAT+TGG | 0.218931 | tig0019144:+77102 | Msa1370950:CDS |
| TATTCCATGCAAAGTTTCTA+TGG | 0.244957 | tig0019144:-76954 | None:intergenic |
| ATAAAATACAATGGCGTCTT+TGG | 0.254337 | tig0019144:-77400 | None:intergenic |
| GCAAAGAATGTGTTATTATT+GGG | 0.266195 | tig0019144:+77103 | Msa1370950:CDS |
| AAGAAATGTTGCAAAATTAG+AGG | 0.290015 | tig0019144:-77058 | None:intergenic |
| CATGGAGGCTTAAGGCTCTT+TGG | 0.298082 | tig0019144:+77666 | Msa1370950:CDS |
| CAATCTACTAAGATAAATTA+TGG | 0.303691 | tig0019144:+76733 | Msa1370950:CDS |
| ATGCAAATCACCAAAGAATA+TGG | 0.307810 | tig0019144:+76854 | Msa1370950:CDS |
| TATATAGCATGATTTCAAAT+TGG | 0.322219 | tig0019144:+76683 | None:intergenic |
| CGCATTATTATTATTATATG+TGG | 0.336291 | tig0019144:-77643 | None:intergenic |
| GGAAGTTTCGATATTGCTAT+TGG | 0.351130 | tig0019144:+77310 | Msa1370950:CDS |
| GCCACAAACCAAAGGAAAAT+AGG | 0.354261 | tig0019144:-77235 | None:intergenic |
| CCTTCTTCCCAACATTTGTT+TGG | 0.354495 | tig0019144:-77556 | None:intergenic |
| ATGTCCCTAACCATATTCTT+TGG | 0.362080 | tig0019144:-76864 | None:intergenic |
| ATTACATCAATTAATGAAAA+TGG | 0.362300 | tig0019144:-77468 | None:intergenic |
| TTCTCCGCTTCTGAGCTTGA+TGG | 0.364773 | tig0019144:-76929 | None:intergenic |
| TATAAATTTGACAAATAGTA+AGG | 0.384791 | tig0019144:+77434 | Msa1370950:CDS |
| TATGAAGTAGAGGATGTTGC+AGG | 0.394052 | tig0019144:+76772 | Msa1370950:CDS |
| ACATAGGTTCTTGAACTGTT+TGG | 0.399593 | tig0019144:-76978 | None:intergenic |
| AATCACCAAAGAATATGGTT+AGG | 0.402926 | tig0019144:+76859 | Msa1370950:CDS |
| GCCTCAACAAAATGGACATT+GGG | 0.403364 | tig0019144:+76819 | Msa1370950:CDS |
| ATTATGATCATGATTAGAAA+TGG | 0.417587 | tig0019144:+77027 | Msa1370950:CDS |
| GTGATGTTGGTAAACTCAAT+AGG | 0.419636 | tig0019144:+77184 | Msa1370950:CDS |
| GGGGTTGTGCCTCAACAAAA+TGG | 0.424759 | tig0019144:+76811 | Msa1370950:CDS |
| CTATATTGACTTTGAAACAT+AGG | 0.426018 | tig0019144:-76994 | None:intergenic |
| ATTTCAAATTGGAGGATGAA+TGG | 0.438567 | tig0019144:+76694 | Msa1370950:CDS |
| CTCTAGTGAACACATAGCTT+TGG | 0.447985 | tig0019144:-77341 | None:intergenic |
| CCAAACAAATGTTGGGAAGA+AGG | 0.452002 | tig0019144:+77556 | Msa1370950:CDS |
| TGGAGATGCCAAACAAATGT+TGG | 0.476126 | tig0019144:+77548 | Msa1370950:CDS |
| CAGGGTGTCAAAAGTTCAAA+GGG | 0.485838 | tig0019144:+76791 | Msa1370950:CDS |
| TGTGAAGGATAAGAAATTGA+AGG | 0.491722 | tig0019144:+77377 | Msa1370950:CDS |
| ATAGCATGATTTCAAATTGG+AGG | 0.493608 | tig0019144:+76686 | None:intergenic |
| TATTATTGGGGTGAAGGGTG+AGG | 0.498083 | tig0019144:+77116 | Msa1370950:CDS |
| GTAATCTACAATGATATTGA+TGG | 0.499329 | tig0019144:+77486 | Msa1370950:CDS |
| AAGGTTAGTTTGCAATGAAG+TGG | 0.504843 | tig0019144:+77575 | Msa1370950:CDS |
| AGAAATGTTGCAAAATTAGA+GGG | 0.510603 | tig0019144:-77057 | None:intergenic |
| TATAATAATAATAATGCGCA+TGG | 0.516250 | tig0019144:+77648 | Msa1370950:CDS |
| ATCTGAAAGAGATGCTGCCA+TGG | 0.516688 | tig0019144:+76891 | Msa1370950:CDS |
| GGAGATGCCAAACAAATGTT+GGG | 0.517841 | tig0019144:+77549 | Msa1370950:CDS |
| ATCACCAAAGAATATGGTTA+GGG | 0.522601 | tig0019144:+76860 | Msa1370950:CDS |
| CACATTCTTTGCCTGCACCT+TGG | 0.523069 | tig0019144:-77092 | None:intergenic |
| TGTTCACTAGAGGATGGAAT+CGG | 0.528136 | tig0019144:+77352 | Msa1370950:CDS |
| ATGTGTTATTATTGGGGTGA+AGG | 0.530392 | tig0019144:+77110 | Msa1370950:CDS |
| TGCCTCAACAAAATGGACAT+TGG | 0.540531 | tig0019144:+76818 | Msa1370950:CDS |
| AGAAATCAAAGCCAAGGTGC+AGG | 0.541294 | tig0019144:+77081 | Msa1370950:CDS |
| TGTGTTATTATTGGGGTGAA+GGG | 0.552552 | tig0019144:+77111 | Msa1370950:CDS |
| ATAATGCGCATGGAGGCTTA+AGG | 0.552920 | tig0019144:+77658 | Msa1370950:CDS |
| GAATTAACACCAAGTGATGT+TGG | 0.555091 | tig0019144:+77171 | Msa1370950:CDS |
| TCCGCTTCTGAGCTTGATGG+TGG | 0.555403 | tig0019144:-76926 | None:intergenic |
| TTTCTTAGAAATCAAAGCCA+AGG | 0.556760 | tig0019144:+77075 | Msa1370950:CDS |
| GCAGGGTGTCAAAAGTTCAA+AGG | 0.558717 | tig0019144:+76790 | Msa1370950:CDS |
| GCCACCATCAAGCTCAGAAG+CGG | 0.559505 | tig0019144:+76925 | Msa1370950:CDS |
| CAAAGAATGTGTTATTATTG+GGG | 0.559724 | tig0019144:+77104 | Msa1370950:CDS |
| ACGTACGAGGTATGAAGTAG+AGG | 0.570592 | tig0019144:+76762 | Msa1370950:CDS |
| TTGAGTTTACCAACATCACT+TGG | 0.572392 | tig0019144:-77180 | None:intergenic |
| ATGACAAACTCATGCGATTG+TGG | 0.577545 | tig0019144:+77289 | Msa1370950:CDS |
| GTTTCAAAGTCAATATAGCA+TGG | 0.588580 | tig0019144:+76999 | Msa1370950:CDS |
| CAAAGCTATGTGTTCACTAG+AGG | 0.590350 | tig0019144:+77342 | Msa1370950:CDS |
| GCTATGTGTTCACTAGAGGA+TGG | 0.591052 | tig0019144:+77346 | Msa1370950:CDS |
| ATAAATTTGACAAATAGTAA+GGG | 0.592698 | tig0019144:+77435 | Msa1370950:CDS |
| ATGAAGTAGAGGATGTTGCA+GGG | 0.600015 | tig0019144:+76773 | Msa1370950:CDS |
| CATATATTGCCACAAACCAA+AGG | 0.617126 | tig0019144:-77243 | None:intergenic |
| AAAGCCATAGAAACTTTGCA+TGG | 0.630622 | tig0019144:+76950 | Msa1370950:CDS |
| AGGATGGAATCGGTTTGTGA+AGG | 0.633521 | tig0019144:+77362 | Msa1370950:CDS |
| AATAATAATAATGCGCATGG+AGG | 0.643929 | tig0019144:+77651 | Msa1370950:CDS |
| TTCACACCTATAAAATACAA+TGG | 0.647499 | tig0019144:-77409 | None:intergenic |
| GGTGGCGCTGTCGTAAGCCA+TGG | 0.650796 | tig0019144:-76908 | None:intergenic |
| GAAATGTTGCAAAATTAGAG+GGG | 0.681722 | tig0019144:-77056 | None:intergenic |
| ATTATGGTGCAAAACGTACG+AGG | 0.696082 | tig0019144:+76749 | Msa1370950:CDS |
| CCTCAACAAAATGGACATTG+GGG | 0.726013 | tig0019144:+76820 | Msa1370950:CDS |
| AGGGTGTCAAAAGTTCAAAG+GGG | 0.762139 | tig0019144:+76792 | Msa1370950:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTACTATTTGTCAAATTTAT+AGG | - | tig0019144:77435-77454 | None:intergenic | 15.0% |
| !! | TATAAATTTGACAAATAGTA+AGG | + | tig0019144:77434-77453 | Msa1370950:CDS | 15.0% |
| !! | ATAAATTTGACAAATAGTAA+GGG | + | tig0019144:77435-77454 | Msa1370950:CDS | 15.0% |
| !! | ATTACATCAATTAATGAAAA+TGG | - | tig0019144:77471-77490 | None:intergenic | 15.0% |
| !! | TTACTATTTGTCAAATTTAT+AGG | - | tig0019144:77435-77454 | None:intergenic | 15.0% |
| !! | TATAAATTTGACAAATAGTA+AGG | + | tig0019144:77434-77453 | Msa1370950:CDS | 15.0% |
| !! | ATAAATTTGACAAATAGTAA+GGG | + | tig0019144:77435-77454 | Msa1370950:CDS | 15.0% |
| !! | ATTACATCAATTAATGAAAA+TGG | - | tig0019144:77471-77490 | None:intergenic | 15.0% |
| !! | CAATCTACTAAGATAAATTA+TGG | + | tig0019144:76733-76752 | Msa1370950:CDS | 20.0% |
| !! | ATTATGATCATGATTAGAAA+TGG | + | tig0019144:77027-77046 | Msa1370950:CDS | 20.0% |
| !! | CGCATTATTATTATTATATG+TGG | - | tig0019144:77646-77665 | None:intergenic | 20.0% |
| !! | TATAATAATAATAATGCGCA+TGG | + | tig0019144:77648-77667 | Msa1370950:CDS | 20.0% |
| !! | CAATCTACTAAGATAAATTA+TGG | + | tig0019144:76733-76752 | Msa1370950:CDS | 20.0% |
| !! | ATTATGATCATGATTAGAAA+TGG | + | tig0019144:77027-77046 | Msa1370950:CDS | 20.0% |
| !! | CGCATTATTATTATTATATG+TGG | - | tig0019144:77646-77665 | None:intergenic | 20.0% |
| !! | TATAATAATAATAATGCGCA+TGG | + | tig0019144:77648-77667 | Msa1370950:CDS | 20.0% |
| !!! | CTATATTGACTTTGAAACAT+AGG | - | tig0019144:76997-77016 | None:intergenic | 25.0% |
| ! | AGAAATGTTGCAAAATTAGA+GGG | - | tig0019144:77060-77079 | None:intergenic | 25.0% |
| ! | AAGAAATGTTGCAAAATTAG+AGG | - | tig0019144:77061-77080 | None:intergenic | 25.0% |
| !! | GCAAAGAATGTGTTATTATT+GGG | + | tig0019144:77103-77122 | Msa1370950:CDS | 25.0% |
| !! | CAAAGAATGTGTTATTATTG+GGG | + | tig0019144:77104-77123 | Msa1370950:CDS | 25.0% |
| ! | TTCACACCTATAAAATACAA+TGG | - | tig0019144:77412-77431 | None:intergenic | 25.0% |
| ! | GTAATCTACAATGATATTGA+TGG | + | tig0019144:77486-77505 | Msa1370950:CDS | 25.0% |
| !!! | ACATTATTCTTTTGAAGATG+AGG | + | tig0019144:77521-77540 | Msa1370950:CDS | 25.0% |
| !!! | CTATATTGACTTTGAAACAT+AGG | - | tig0019144:76997-77016 | None:intergenic | 25.0% |
| ! | AGAAATGTTGCAAAATTAGA+GGG | - | tig0019144:77060-77079 | None:intergenic | 25.0% |
| ! | AAGAAATGTTGCAAAATTAG+AGG | - | tig0019144:77061-77080 | None:intergenic | 25.0% |
| !! | GCAAAGAATGTGTTATTATT+GGG | + | tig0019144:77103-77122 | Msa1370950:CDS | 25.0% |
| !! | CAAAGAATGTGTTATTATTG+GGG | + | tig0019144:77104-77123 | Msa1370950:CDS | 25.0% |
| ! | TTCACACCTATAAAATACAA+TGG | - | tig0019144:77412-77431 | None:intergenic | 25.0% |
| ! | GTAATCTACAATGATATTGA+TGG | + | tig0019144:77486-77505 | Msa1370950:CDS | 25.0% |
| !!! | ACATTATTCTTTTGAAGATG+AGG | + | tig0019144:77521-77540 | Msa1370950:CDS | 25.0% |
| ATTTCAAATTGGAGGATGAA+TGG | + | tig0019144:76694-76713 | Msa1370950:CDS | 30.0% | |
| ATGCAAATCACCAAAGAATA+TGG | + | tig0019144:76854-76873 | Msa1370950:CDS | 30.0% | |
| AATCACCAAAGAATATGGTT+AGG | + | tig0019144:76859-76878 | Msa1370950:CDS | 30.0% | |
| ATCACCAAAGAATATGGTTA+GGG | + | tig0019144:76860-76879 | Msa1370950:CDS | 30.0% | |
| TATTCCATGCAAAGTTTCTA+TGG | - | tig0019144:76957-76976 | None:intergenic | 30.0% | |
| GTTTCAAAGTCAATATAGCA+TGG | + | tig0019144:76999-77018 | Msa1370950:CDS | 30.0% | |
| GAAATGTTGCAAAATTAGAG+GGG | - | tig0019144:77059-77078 | None:intergenic | 30.0% | |
| TTTCTTAGAAATCAAAGCCA+AGG | + | tig0019144:77075-77094 | Msa1370950:CDS | 30.0% | |
| ! | GGCAAAGAATGTGTTATTAT+TGG | + | tig0019144:77102-77121 | Msa1370950:CDS | 30.0% |
| !!! | TAGGTAACTGCATGTTTTTT+GGG | - | tig0019144:77219-77238 | None:intergenic | 30.0% |
| !!! | ATAGGTAACTGCATGTTTTT+TGG | - | tig0019144:77220-77239 | None:intergenic | 30.0% |
| TGTGAAGGATAAGAAATTGA+AGG | + | tig0019144:77377-77396 | Msa1370950:CDS | 30.0% | |
| ATAAAATACAATGGCGTCTT+TGG | - | tig0019144:77403-77422 | None:intergenic | 30.0% | |
| ! | AAGACGCCATTGTATTTTAT+AGG | + | tig0019144:77403-77422 | Msa1370950:CDS | 30.0% |
| !! | TTATTCTTTTGAAGATGAGG+AGG | + | tig0019144:77524-77543 | Msa1370950:CDS | 30.0% |
| AATAATAATAATGCGCATGG+AGG | + | tig0019144:77651-77670 | Msa1370950:CDS | 30.0% | |
| ATTTCAAATTGGAGGATGAA+TGG | + | tig0019144:76694-76713 | Msa1370950:CDS | 30.0% | |
| ATGCAAATCACCAAAGAATA+TGG | + | tig0019144:76854-76873 | Msa1370950:CDS | 30.0% | |
| AATCACCAAAGAATATGGTT+AGG | + | tig0019144:76859-76878 | Msa1370950:CDS | 30.0% | |
| ATCACCAAAGAATATGGTTA+GGG | + | tig0019144:76860-76879 | Msa1370950:CDS | 30.0% | |
| TATTCCATGCAAAGTTTCTA+TGG | - | tig0019144:76957-76976 | None:intergenic | 30.0% | |
| GTTTCAAAGTCAATATAGCA+TGG | + | tig0019144:76999-77018 | Msa1370950:CDS | 30.0% | |
| GAAATGTTGCAAAATTAGAG+GGG | - | tig0019144:77059-77078 | None:intergenic | 30.0% | |
| TTTCTTAGAAATCAAAGCCA+AGG | + | tig0019144:77075-77094 | Msa1370950:CDS | 30.0% | |
| ! | GGCAAAGAATGTGTTATTAT+TGG | + | tig0019144:77102-77121 | Msa1370950:CDS | 30.0% |
| !!! | TAGGTAACTGCATGTTTTTT+GGG | - | tig0019144:77219-77238 | None:intergenic | 30.0% |
| !!! | ATAGGTAACTGCATGTTTTT+TGG | - | tig0019144:77220-77239 | None:intergenic | 30.0% |
| TGTGAAGGATAAGAAATTGA+AGG | + | tig0019144:77377-77396 | Msa1370950:CDS | 30.0% | |
| ATAAAATACAATGGCGTCTT+TGG | - | tig0019144:77403-77422 | None:intergenic | 30.0% | |
| ! | AAGACGCCATTGTATTTTAT+AGG | + | tig0019144:77403-77422 | Msa1370950:CDS | 30.0% |
| !! | TTATTCTTTTGAAGATGAGG+AGG | + | tig0019144:77524-77543 | Msa1370950:CDS | 30.0% |
| AATAATAATAATGCGCATGG+AGG | + | tig0019144:77651-77670 | Msa1370950:CDS | 30.0% | |
| ATGTCCCTAACCATATTCTT+TGG | - | tig0019144:76867-76886 | None:intergenic | 35.0% | |
| AAAGCCATAGAAACTTTGCA+TGG | + | tig0019144:76950-76969 | Msa1370950:CDS | 35.0% | |
| ACATAGGTTCTTGAACTGTT+TGG | - | tig0019144:76981-77000 | None:intergenic | 35.0% | |
| ! | ATGTGTTATTATTGGGGTGA+AGG | + | tig0019144:77110-77129 | Msa1370950:CDS | 35.0% |
| ! | TGTGTTATTATTGGGGTGAA+GGG | + | tig0019144:77111-77130 | Msa1370950:CDS | 35.0% |
| GAATTAACACCAAGTGATGT+TGG | + | tig0019144:77171-77190 | Msa1370950:CDS | 35.0% | |
| TTGAGTTTACCAACATCACT+TGG | - | tig0019144:77183-77202 | None:intergenic | 35.0% | |
| ! | GTGATGTTGGTAAACTCAAT+AGG | + | tig0019144:77184-77203 | Msa1370950:CDS | 35.0% |
| !!! | AGGTAACTGCATGTTTTTTG+GGG | - | tig0019144:77218-77237 | None:intergenic | 35.0% |
| ! | TGCAGTTACCTATTTTCCTT+TGG | + | tig0019144:77227-77246 | Msa1370950:CDS | 35.0% |
| !!! | ACCTATTTTCCTTTGGTTTG+TGG | + | tig0019144:77234-77253 | Msa1370950:CDS | 35.0% |
| CATATATTGCCACAAACCAA+AGG | - | tig0019144:77246-77265 | None:intergenic | 35.0% | |
| GGAAGTTTCGATATTGCTAT+TGG | + | tig0019144:77310-77329 | Msa1370950:CDS | 35.0% | |
| !! | AAGGTTAGTTTGCAATGAAG+TGG | + | tig0019144:77575-77594 | Msa1370950:CDS | 35.0% |
| ATGTCCCTAACCATATTCTT+TGG | - | tig0019144:76867-76886 | None:intergenic | 35.0% | |
| AAAGCCATAGAAACTTTGCA+TGG | + | tig0019144:76950-76969 | Msa1370950:CDS | 35.0% | |
| ACATAGGTTCTTGAACTGTT+TGG | - | tig0019144:76981-77000 | None:intergenic | 35.0% | |
| ! | ATGTGTTATTATTGGGGTGA+AGG | + | tig0019144:77110-77129 | Msa1370950:CDS | 35.0% |
| ! | TGTGTTATTATTGGGGTGAA+GGG | + | tig0019144:77111-77130 | Msa1370950:CDS | 35.0% |
| GAATTAACACCAAGTGATGT+TGG | + | tig0019144:77171-77190 | Msa1370950:CDS | 35.0% | |
| TTGAGTTTACCAACATCACT+TGG | - | tig0019144:77183-77202 | None:intergenic | 35.0% | |
| ! | GTGATGTTGGTAAACTCAAT+AGG | + | tig0019144:77184-77203 | Msa1370950:CDS | 35.0% |
| !!! | AGGTAACTGCATGTTTTTTG+GGG | - | tig0019144:77218-77237 | None:intergenic | 35.0% |
| ! | TGCAGTTACCTATTTTCCTT+TGG | + | tig0019144:77227-77246 | Msa1370950:CDS | 35.0% |
| !!! | ACCTATTTTCCTTTGGTTTG+TGG | + | tig0019144:77234-77253 | Msa1370950:CDS | 35.0% |
| CATATATTGCCACAAACCAA+AGG | - | tig0019144:77246-77265 | None:intergenic | 35.0% | |
| GGAAGTTTCGATATTGCTAT+TGG | + | tig0019144:77310-77329 | Msa1370950:CDS | 35.0% | |
| !! | AAGGTTAGTTTGCAATGAAG+TGG | + | tig0019144:77575-77594 | Msa1370950:CDS | 35.0% |
| ATTATGGTGCAAAACGTACG+AGG | + | tig0019144:76749-76768 | Msa1370950:CDS | 40.0% | |
| TATGAAGTAGAGGATGTTGC+AGG | + | tig0019144:76772-76791 | Msa1370950:CDS | 40.0% | |
| ATGAAGTAGAGGATGTTGCA+GGG | + | tig0019144:76773-76792 | Msa1370950:CDS | 40.0% | |
| ! | CAGGGTGTCAAAAGTTCAAA+GGG | + | tig0019144:76791-76810 | Msa1370950:CDS | 40.0% |
| ! | AGGGTGTCAAAAGTTCAAAG+GGG | + | tig0019144:76792-76811 | Msa1370950:CDS | 40.0% |
| TGCCTCAACAAAATGGACAT+TGG | + | tig0019144:76818-76837 | Msa1370950:CDS | 40.0% | |
| GCCTCAACAAAATGGACATT+GGG | + | tig0019144:76819-76838 | Msa1370950:CDS | 40.0% | |
| CCTCAACAAAATGGACATTG+GGG | + | tig0019144:76820-76839 | Msa1370950:CDS | 40.0% | |
| GCCACAAACCAAAGGAAAAT+AGG | - | tig0019144:77238-77257 | None:intergenic | 40.0% | |
| ATGACAAACTCATGCGATTG+TGG | + | tig0019144:77289-77308 | Msa1370950:CDS | 40.0% | |
| CTCTAGTGAACACATAGCTT+TGG | - | tig0019144:77344-77363 | None:intergenic | 40.0% | |
| CAAAGCTATGTGTTCACTAG+AGG | + | tig0019144:77342-77361 | Msa1370950:CDS | 40.0% | |
| TGTTCACTAGAGGATGGAAT+CGG | + | tig0019144:77352-77371 | Msa1370950:CDS | 40.0% | |
| !! | TCTTTTGAAGATGAGGAGGA+TGG | + | tig0019144:77528-77547 | Msa1370950:CDS | 40.0% |
| TGGAGATGCCAAACAAATGT+TGG | + | tig0019144:77548-77567 | Msa1370950:CDS | 40.0% | |
| GGAGATGCCAAACAAATGTT+GGG | + | tig0019144:77549-77568 | Msa1370950:CDS | 40.0% | |
| CCTTCTTCCCAACATTTGTT+TGG | - | tig0019144:77559-77578 | None:intergenic | 40.0% | |
| CCAAACAAATGTTGGGAAGA+AGG | + | tig0019144:77556-77575 | Msa1370950:CDS | 40.0% | |
| ATTATGGTGCAAAACGTACG+AGG | + | tig0019144:76749-76768 | Msa1370950:CDS | 40.0% | |
| TATGAAGTAGAGGATGTTGC+AGG | + | tig0019144:76772-76791 | Msa1370950:CDS | 40.0% | |
| ATGAAGTAGAGGATGTTGCA+GGG | + | tig0019144:76773-76792 | Msa1370950:CDS | 40.0% | |
| ! | CAGGGTGTCAAAAGTTCAAA+GGG | + | tig0019144:76791-76810 | Msa1370950:CDS | 40.0% |
| ! | AGGGTGTCAAAAGTTCAAAG+GGG | + | tig0019144:76792-76811 | Msa1370950:CDS | 40.0% |
| TGCCTCAACAAAATGGACAT+TGG | + | tig0019144:76818-76837 | Msa1370950:CDS | 40.0% | |
| GCCTCAACAAAATGGACATT+GGG | + | tig0019144:76819-76838 | Msa1370950:CDS | 40.0% | |
| CCTCAACAAAATGGACATTG+GGG | + | tig0019144:76820-76839 | Msa1370950:CDS | 40.0% | |
| GCCACAAACCAAAGGAAAAT+AGG | - | tig0019144:77238-77257 | None:intergenic | 40.0% | |
| ATGACAAACTCATGCGATTG+TGG | + | tig0019144:77289-77308 | Msa1370950:CDS | 40.0% | |
| CTCTAGTGAACACATAGCTT+TGG | - | tig0019144:77344-77363 | None:intergenic | 40.0% | |
| CAAAGCTATGTGTTCACTAG+AGG | + | tig0019144:77342-77361 | Msa1370950:CDS | 40.0% | |
| TGTTCACTAGAGGATGGAAT+CGG | + | tig0019144:77352-77371 | Msa1370950:CDS | 40.0% | |
| !! | TCTTTTGAAGATGAGGAGGA+TGG | + | tig0019144:77528-77547 | Msa1370950:CDS | 40.0% |
| TGGAGATGCCAAACAAATGT+TGG | + | tig0019144:77548-77567 | Msa1370950:CDS | 40.0% | |
| GGAGATGCCAAACAAATGTT+GGG | + | tig0019144:77549-77568 | Msa1370950:CDS | 40.0% | |
| CCTTCTTCCCAACATTTGTT+TGG | - | tig0019144:77559-77578 | None:intergenic | 40.0% | |
| CCAAACAAATGTTGGGAAGA+AGG | + | tig0019144:77556-77575 | Msa1370950:CDS | 40.0% | |
| ACGTACGAGGTATGAAGTAG+AGG | + | tig0019144:76762-76781 | Msa1370950:CDS | 45.0% | |
| ! | GCAGGGTGTCAAAAGTTCAA+AGG | + | tig0019144:76790-76809 | Msa1370950:CDS | 45.0% |
| ! | CCCCAATGTCCATTTTGTTG+AGG | - | tig0019144:76823-76842 | None:intergenic | 45.0% |
| ATCTGAAAGAGATGCTGCCA+TGG | + | tig0019144:76891-76910 | Msa1370950:CDS | 45.0% | |
| AGAAATCAAAGCCAAGGTGC+AGG | + | tig0019144:77081-77100 | Msa1370950:CDS | 45.0% | |
| TATTATTGGGGTGAAGGGTG+AGG | + | tig0019144:77116-77135 | Msa1370950:CDS | 45.0% | |
| GCTATGTGTTCACTAGAGGA+TGG | + | tig0019144:77346-77365 | Msa1370950:CDS | 45.0% | |
| !! | AGGATGGAATCGGTTTGTGA+AGG | + | tig0019144:77362-77381 | Msa1370950:CDS | 45.0% |
| ATAATGCGCATGGAGGCTTA+AGG | + | tig0019144:77658-77677 | Msa1370950:CDS | 45.0% | |
| ACGTACGAGGTATGAAGTAG+AGG | + | tig0019144:76762-76781 | Msa1370950:CDS | 45.0% | |
| ! | GCAGGGTGTCAAAAGTTCAA+AGG | + | tig0019144:76790-76809 | Msa1370950:CDS | 45.0% |
| ! | CCCCAATGTCCATTTTGTTG+AGG | - | tig0019144:76823-76842 | None:intergenic | 45.0% |
| ATCTGAAAGAGATGCTGCCA+TGG | + | tig0019144:76891-76910 | Msa1370950:CDS | 45.0% | |
| AGAAATCAAAGCCAAGGTGC+AGG | + | tig0019144:77081-77100 | Msa1370950:CDS | 45.0% | |
| TATTATTGGGGTGAAGGGTG+AGG | + | tig0019144:77116-77135 | Msa1370950:CDS | 45.0% | |
| GCTATGTGTTCACTAGAGGA+TGG | + | tig0019144:77346-77365 | Msa1370950:CDS | 45.0% | |
| !! | AGGATGGAATCGGTTTGTGA+AGG | + | tig0019144:77362-77381 | Msa1370950:CDS | 45.0% |
| ATAATGCGCATGGAGGCTTA+AGG | + | tig0019144:77658-77677 | Msa1370950:CDS | 45.0% | |
| GGGGTTGTGCCTCAACAAAA+TGG | + | tig0019144:76811-76830 | Msa1370950:CDS | 50.0% | |
| TTCTCCGCTTCTGAGCTTGA+TGG | - | tig0019144:76932-76951 | None:intergenic | 50.0% | |
| CACATTCTTTGCCTGCACCT+TGG | - | tig0019144:77095-77114 | None:intergenic | 50.0% | |
| CATGGAGGCTTAAGGCTCTT+TGG | + | tig0019144:77666-77685 | Msa1370950:CDS | 50.0% | |
| GGGGTTGTGCCTCAACAAAA+TGG | + | tig0019144:76811-76830 | Msa1370950:CDS | 50.0% | |
| TTCTCCGCTTCTGAGCTTGA+TGG | - | tig0019144:76932-76951 | None:intergenic | 50.0% | |
| CACATTCTTTGCCTGCACCT+TGG | - | tig0019144:77095-77114 | None:intergenic | 50.0% | |
| CATGGAGGCTTAAGGCTCTT+TGG | + | tig0019144:77666-77685 | Msa1370950:CDS | 50.0% | |
| GCCACCATCAAGCTCAGAAG+CGG | + | tig0019144:76925-76944 | Msa1370950:CDS | 55.0% | |
| TCCGCTTCTGAGCTTGATGG+TGG | - | tig0019144:76929-76948 | None:intergenic | 55.0% | |
| GCCACCATCAAGCTCAGAAG+CGG | + | tig0019144:76925-76944 | Msa1370950:CDS | 55.0% | |
| TCCGCTTCTGAGCTTGATGG+TGG | - | tig0019144:76929-76948 | None:intergenic | 55.0% | |
| GGTGGCGCTGTCGTAAGCCA+TGG | - | tig0019144:76911-76930 | None:intergenic | 65.0% | |
| GGTGGCGCTGTCGTAAGCCA+TGG | - | tig0019144:76911-76930 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0019144 | gene | 76691 | 77704 | 76691 | ID=Msa1370950;Name=Msa1370950 |
| tig0019144 | mRNA | 76691 | 77704 | 76691 | ID=Msa1370950-mRNA-1;Parent=Msa1370950;Name=Msa1370950-mRNA-1;_AED=0.00;_eAED=0.11;_QI=0|-1|0|1|-1|1|1|0|337 |
| tig0019144 | exon | 76691 | 77704 | 76691 | ID=Msa1370950-mRNA-1:exon:1955;Parent=Msa1370950-mRNA-1 |
| tig0019144 | CDS | 76691 | 77704 | 76691 | ID=Msa1370950-mRNA-1:cds;Parent=Msa1370950-mRNA-1 |
| Gene Sequence |
| Protein sequence |
