AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1374250

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1374250 MtrunA17_Chr2g0330621 77.841 176 26 2 4 166 28 203 1.10e-92 271
Msa1374250 MtrunA17_Chr2g0330591 73.034 178 34 3 4 168 261 437 4.68e-80 257
Msa1374250 MtrunA17_Chr2g0330591 71.963 107 29 1 143 249 541 646 3.22e-43 155
Msa1374250 MtrunA17_Chr2g0330631 89.655 87 9 0 163 249 73 159 4.79e-50 164
Msa1374250 MtrunA17_Chr8g0340871 41.436 181 89 5 4 168 265 444 7.23e-31 120
Msa1374250 MtrunA17_Chr8g0340871 48.810 84 43 0 166 249 565 648 3.33e-20 89.4
Msa1374250 MtrunA17_Chr8g0341151 40.217 184 87 5 4 168 255 434 8.26e-30 117
Msa1374250 MtrunA17_Chr8g0341151 51.724 87 42 0 163 249 546 632 1.41e-22 96.3
Msa1374250 MtrunA17_Chr8g0340931 40.659 182 90 5 4 168 259 439 1.23e-28 114
Msa1374250 MtrunA17_Chr8g0340931 52.874 87 41 0 163 249 553 639 2.52e-22 95.9
Msa1374250 MtrunA17_Chr8g0341011 40.110 182 91 5 4 168 260 440 4.22e-28 112
Msa1374250 MtrunA17_Chr8g0341011 52.874 87 41 0 163 249 556 642 3.73e-23 98.2
Msa1374250 MtrunA17_Chr8g0341231 40.828 169 77 6 21 168 298 464 3.08e-27 109
Msa1374250 MtrunA17_Chr8g0347661 38.122 181 95 5 4 168 267 446 4.69e-27 109
Msa1374250 MtrunA17_Chr8g0347661 50.602 83 41 0 167 249 562 644 4.58e-21 92.0
Msa1374250 MtrunA17_Chr8g0340941 38.922 167 75 4 21 168 276 434 2.02e-26 107
Msa1374250 MtrunA17_Chr8g0340891 37.222 180 86 4 8 168 267 438 2.69e-26 107
Msa1374250 MtrunA17_Chr8g0340891 52.874 87 41 0 163 249 551 637 1.17e-23 99.8
Msa1374250 MtrunA17_Chr8g0341361 59.770 87 34 1 163 249 175 260 5.02e-26 105
Msa1374250 MtrunA17_Chr8g0340911 38.286 175 94 3 8 168 265 439 7.46e-26 105
Msa1374250 MtrunA17_Chr8g0340911 50.575 87 43 0 163 249 553 639 1.31e-21 93.6
Msa1374250 MtrunA17_Chr8g0340881 38.919 185 89 5 4 168 263 443 9.86e-26 105
Msa1374250 MtrunA17_Chr8g0340881 51.724 87 42 0 163 249 557 643 1.13e-21 94.0
Msa1374250 MtrunA17_Chr8g0341131 53.012 83 39 0 167 249 8 90 1.16e-23 93.6
Msa1374250 MtrunA17_Chr6g0487571 51.546 97 42 1 153 249 552 643 1.42e-23 99.4
Msa1374250 MtrunA17_Chr6g0487571 33.149 181 103 5 2 166 262 440 1.86e-20 90.1
Msa1374250 MtrunA17_Chr8g0341101 55.422 83 37 0 167 249 607 689 3.93e-23 98.2
Msa1374250 MtrunA17_Chr8g0341101 36.047 172 92 7 19 178 332 497 2.41e-16 78.2
Msa1374250 MtrunA17_Chr8g0341061 51.724 87 42 0 163 249 600 686 1.01e-22 96.7
Msa1374250 MtrunA17_Chr8g0341061 36.145 166 89 6 9 162 318 478 1.31e-17 82.0
Msa1374250 MtrunA17_Chr8g0341221 54.217 83 38 0 167 249 28 110 1.66e-22 91.7
Msa1374250 MtrunA17_Chr8g0341111 53.012 83 39 0 167 249 470 552 2.94e-22 95.5
Msa1374250 MtrunA17_Chr8g0341081 51.807 83 40 0 167 249 38 120 3.70e-22 93.2
Msa1374250 MtrunA17_Chr8g0358831 38.411 151 79 4 30 166 254 404 6.41e-22 94.4
Msa1374250 MtrunA17_Chr8g0358831 51.111 90 37 1 167 249 518 607 9.79e-21 90.9
Msa1374250 MtrunA17_Chr8g0340951 49.425 87 44 0 163 249 29 115 6.62e-22 90.1
Msa1374250 MtrunA17_Chr8g0341251 50.575 87 43 0 163 249 35 121 7.68e-22 92.4
Msa1374250 MtrunA17_Chr8g0340971 49.425 87 44 0 163 249 76 162 1.06e-21 90.9
Msa1374250 MtrunA17_Chr2g0330691 86.364 44 6 0 206 249 1 44 4.73e-19 82.8
Msa1374250 MtrunA17_Chr8g0341141 31.343 201 114 7 4 186 261 455 2.37e-18 84.0
Msa1374250 MtrunA17_Chr8g0341091 32.275 189 110 6 2 178 309 491 1.74e-16 78.6
Msa1374250 MtrunA17_Chr5g0423891 41.573 89 52 0 161 249 147 235 6.59e-15 73.6
Msa1374250 MtrunA17_Chr8g0365691 42.308 78 43 1 165 240 297 374 1.37e-13 69.7
Msa1374250 MtrunA17_Chr8g0373501 36.792 106 62 3 149 249 304 409 1.37e-13 70.1
Msa1374250 MtrunA17_Chr6g0455651 39.362 94 52 1 156 249 100 188 2.15e-13 68.9
Msa1374250 MtrunA17_Chr8g0376131 43.529 85 46 1 167 249 40 124 4.47e-13 68.2
Msa1374250 MtrunA17_Chr7g0237401 38.043 92 54 2 161 249 75 166 8.13e-13 67.4
Msa1374250 MtrunA17_Chr2g0318301 36.000 100 61 2 153 249 475 574 1.30e-12 67.0
Msa1374250 MtrunA17_Chr7g0263591 40.506 79 47 0 171 249 598 676 1.58e-12 67.0
Msa1374250 MtrunA17_Chr2g0319101 33.071 127 73 2 123 249 70 184 1.63e-12 66.6
Msa1374250 MtrunA17_Chr6g0485761 38.824 85 50 1 167 249 283 367 2.58e-12 66.2
Msa1374250 MtrunA17_Chr1g0181731 39.759 83 50 0 167 249 588 670 2.78e-12 66.2
Msa1374250 MtrunA17_Chr1g0160581 42.045 88 50 1 162 249 290 376 4.87e-12 65.5
Msa1374250 MtrunA17_Chr6g0487561 35.714 112 67 3 2 110 271 380 5.21e-12 65.1
Msa1374250 MtrunA17_Chr7g0219671 38.614 101 57 3 154 249 505 605 5.44e-12 65.5
Msa1374250 MtrunA17_Chr5g0403891 37.778 90 54 1 162 249 239 328 5.92e-12 65.1
Msa1374250 MtrunA17_Chr6g0485721 38.095 84 50 1 167 248 86 169 8.21e-12 64.3
Msa1374250 MtrunA17_Chr8g0352381 35.294 85 53 1 167 249 519 603 8.25e-12 64.7
Msa1374250 MtrunA17_Chr8g0341171 36.782 87 37 1 163 249 72 140 8.75e-12 61.6
Msa1374250 MtrunA17_Chr7g0219781 39.506 81 47 1 171 249 528 608 1.16e-11 64.3
Msa1374250 MtrunA17_Chr7g0219691 39.604 101 56 3 154 249 505 605 1.40e-11 63.9
Msa1374250 MtrunA17_Chr7g0219721 39.604 101 56 3 154 249 505 605 1.40e-11 63.9
Msa1374250 MtrunA17_Chr3g0123141 41.791 67 39 0 176 242 607 673 1.47e-11 63.9
Msa1374250 MtrunA17_Chr1g0160771 42.045 88 50 1 162 249 286 372 1.72e-11 63.5
Msa1374250 MtrunA17_Chr7g0219601 40.741 81 46 1 171 249 511 591 1.87e-11 63.5
Msa1374250 MtrunA17_Chr7g0219571 39.506 81 47 1 171 249 527 607 1.92e-11 63.5
Msa1374250 MtrunA17_Chr1g0160731 40.909 88 51 1 162 249 282 368 2.17e-11 63.5
Msa1374250 MtrunA17_Chr8g0341181 50.000 58 24 1 121 178 21 73 2.28e-11 59.7
Msa1374250 MtrunA17_Chr7g0219651 39.506 81 47 1 171 249 1512 1592 2.42e-11 63.5
Msa1374250 MtrunA17_Chr7g0219631 39.024 82 47 2 166 244 48 129 2.42e-11 59.7
Msa1374250 MtrunA17_Chr3g0143961 31.633 98 65 1 154 249 43 140 2.60e-11 62.8
Msa1374250 MtrunA17_Chr1g0190581 36.585 82 50 1 170 249 513 594 2.68e-11 63.2
Msa1374250 MtrunA17_Chr4g0061081 36.471 85 52 1 167 249 515 599 2.78e-11 63.2
Msa1374250 MtrunA17_Chr7g0219611 40.741 81 46 1 171 249 507 587 2.96e-11 63.2
Msa1374250 MtrunA17_Chr1g0203631 38.272 81 48 1 171 249 985 1065 3.20e-11 63.2
Msa1374250 MtrunA17_Chr1g0158771 37.500 88 54 1 162 249 274 360 3.72e-11 62.8
Msa1374250 MtrunA17_Chr1g0158181 33.333 87 57 1 163 249 312 397 3.87e-11 62.8
Msa1374250 MtrunA17_Chr1g0160921 37.255 102 59 2 153 249 23 124 5.04e-11 62.0
Msa1374250 MtrunA17_Chr5g0441021 36.000 100 51 3 163 249 53 152 5.08e-11 62.0
Msa1374250 MtrunA17_Chr2g0291501 40.230 87 49 2 157 240 616 702 5.18e-11 62.4
Msa1374250 MtrunA17_Chr3g0108351 35.294 85 53 1 167 249 608 692 5.21e-11 62.4
Msa1374250 MtrunA17_Chr1g0158341 35.556 90 57 1 160 249 12 100 5.48e-11 61.6
Msa1374250 MtrunA17_Chr3g0144481 40.789 76 43 1 167 240 77 152 5.95e-11 62.0
Msa1374250 MtrunA17_Chr1g0206211 32.990 97 63 1 155 249 4 100 5.96e-11 60.1
Msa1374250 MtrunA17_Chr3g0106121 35.000 100 59 2 150 249 493 586 6.46e-11 62.0
Msa1374250 MtrunA17_Chr4g0053591 39.474 76 44 1 176 249 145 220 6.48e-11 62.0
Msa1374250 MtrunA17_Chr4g0053561 39.474 76 44 1 176 249 438 513 7.06e-11 62.0
Msa1374250 MtrunA17_Chr5g0411631 36.250 80 51 0 170 249 589 668 7.46e-11 62.0
Msa1374250 MtrunA17_Chr8g0341271 35.135 111 67 2 4 113 191 297 7.47e-11 61.2
Msa1374250 MtrunA17_Chr8g0341351 40.625 96 53 3 21 113 291 385 7.70e-11 61.6
Msa1374250 MtrunA17_Chr3g0108361 38.824 85 50 1 167 249 610 694 9.47e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1374250 AT2G19210.1 43.353 173 83 3 5 162 264 436 9.17e-36 135
Msa1374250 AT2G19210.1 50.000 100 49 1 150 249 549 647 4.19e-23 98.2
Msa1374250 AT1G05700.1 41.358 162 78 5 21 166 276 436 8.31e-29 114
Msa1374250 AT1G05700.1 45.783 83 44 1 167 249 560 641 1.18e-16 79.3
Msa1374250 AT1G05700.2 41.358 162 78 5 21 166 276 436 9.68e-29 114
Msa1374250 AT1G05700.2 45.783 83 44 1 167 249 591 672 1.17e-16 79.7
Msa1374250 AT1G51890.5 60.920 87 33 1 163 249 284 369 1.01e-28 114
Msa1374250 AT1G51890.5 38.217 157 78 4 25 162 1 157 3.69e-20 89.7
Msa1374250 AT1G51890.4 60.920 87 33 1 163 249 492 577 1.27e-28 114
Msa1374250 AT1G51890.4 38.650 163 81 4 19 162 203 365 3.83e-22 95.5
Msa1374250 AT1G51890.3 60.920 87 33 1 163 249 556 641 1.39e-28 114
Msa1374250 AT1G51890.3 37.725 167 85 4 19 166 267 433 3.95e-22 95.5
Msa1374250 AT1G51890.2 60.920 87 33 1 163 249 556 641 1.48e-28 114
Msa1374250 AT1G51890.2 38.650 163 81 4 19 162 267 429 3.86e-22 95.5
Msa1374250 AT1G51890.1 60.920 87 33 1 163 249 556 641 1.53e-28 114
Msa1374250 AT1G51890.1 38.650 163 81 4 19 162 267 429 4.38e-22 95.5
Msa1374250 AT5G59680.1 39.881 168 75 6 21 166 274 437 7.36e-27 109
Msa1374250 AT5G59680.1 48.864 88 45 0 162 249 565 652 6.04e-17 80.5
Msa1374250 AT3G46400.1 40.659 182 88 7 4 166 258 438 9.69e-27 108
Msa1374250 AT3G46400.1 44.792 96 53 0 154 249 553 648 1.10e-20 91.3
Msa1374250 AT2G19230.1 38.411 151 77 4 21 155 280 430 1.17e-26 108
Msa1374250 AT2G19230.1 53.012 83 38 1 167 249 560 641 2.05e-20 90.5
Msa1374250 AT2G19230.2 38.411 151 77 4 21 155 280 430 1.44e-26 108
Msa1374250 AT2G19230.2 53.012 83 38 1 167 249 559 640 1.76e-20 90.9
Msa1374250 AT1G51880.3 57.732 97 38 2 153 249 570 663 1.52e-26 108
Msa1374250 AT1G51880.3 40.541 185 83 5 4 165 274 454 2.11e-26 107
Msa1374250 AT1G51880.2 57.732 97 38 2 153 249 562 655 1.63e-26 108
Msa1374250 AT1G51880.2 40.541 185 83 5 4 165 274 454 2.06e-26 107
Msa1374250 AT1G51880.1 57.732 97 38 2 153 249 544 637 1.73e-26 108
Msa1374250 AT1G51880.1 40.541 185 83 5 4 165 256 436 2.44e-26 107
Msa1374250 AT1G51860.2 62.963 81 29 1 169 249 432 511 2.12e-26 107
Msa1374250 AT1G51860.2 39.394 165 81 4 17 162 126 290 3.87e-24 101
Msa1374250 AT1G51860.1 62.963 81 29 1 169 249 576 655 2.88e-26 107
Msa1374250 AT1G51860.1 39.394 165 81 4 17 162 270 434 4.65e-24 101
Msa1374250 AT3G21340.2 55.172 87 39 0 163 249 578 664 7.22e-26 106
Msa1374250 AT3G21340.2 35.795 176 93 6 10 166 267 441 8.79e-23 97.4
Msa1374250 AT3G21340.1 55.172 87 39 0 163 249 578 664 8.10e-26 106
Msa1374250 AT3G21340.1 35.795 176 93 6 10 166 267 441 5.87e-23 97.8
Msa1374250 AT1G51870.2 57.471 87 36 1 163 249 569 654 8.64e-26 106
Msa1374250 AT1G51870.2 40.491 163 78 3 22 165 275 437 2.73e-24 101
Msa1374250 AT1G51805.1 39.766 171 69 6 22 166 268 430 9.96e-26 105
Msa1374250 AT1G51805.1 52.874 87 41 0 163 249 563 649 2.09e-24 102
Msa1374250 AT1G51805.2 39.766 171 69 6 22 166 244 406 9.98e-26 105
Msa1374250 AT1G51805.2 52.874 87 41 0 163 249 539 625 2.13e-24 102
Msa1374250 AT4G29990.1 35.294 187 98 6 1 165 250 435 1.07e-25 105
Msa1374250 AT4G29990.1 56.627 83 35 1 167 249 564 645 3.80e-23 98.6
Msa1374250 AT1G51870.1 57.471 87 36 1 163 249 517 602 1.09e-25 105
Msa1374250 AT1G51870.1 37.705 183 95 3 22 185 275 457 6.36e-25 103
Msa1374250 AT4G29990.2 35.294 187 98 6 1 165 250 435 1.34e-25 105
Msa1374250 AT4G29990.2 56.627 83 35 1 167 249 564 645 3.28e-23 98.6
Msa1374250 AT2G04300.2 54.023 87 40 0 163 249 568 654 2.59e-25 104
Msa1374250 AT2G04300.2 35.676 185 95 9 2 166 262 442 9.52e-23 97.4
Msa1374250 AT2G04300.1 54.023 87 40 0 163 249 527 613 2.61e-25 104
Msa1374250 AT2G04300.1 30.387 181 69 7 2 166 262 401 2.04e-14 72.8
Msa1374250 AT3G46370.2 39.227 181 84 8 5 166 176 349 4.58e-25 103
Msa1374250 AT3G46370.2 43.137 102 54 1 152 249 458 559 1.09e-19 88.6
Msa1374250 AT3G46370.1 39.227 181 84 8 5 166 176 349 4.58e-25 103
Msa1374250 AT3G46370.1 43.137 102 54 1 152 249 458 559 1.09e-19 88.6
Msa1374250 AT1G51830.2 52.874 87 41 0 163 249 379 465 5.06e-25 103
Msa1374250 AT1G51830.2 34.184 196 109 6 4 181 69 262 2.37e-20 90.1
Msa1374250 AT1G51830.1 52.874 87 41 0 163 249 372 458 5.33e-25 103
Msa1374250 AT1G51830.1 34.184 196 109 6 4 181 62 255 2.25e-20 90.5
Msa1374250 AT1G51810.1 35.676 185 99 5 1 166 121 304 5.86e-25 103
Msa1374250 AT1G51810.1 52.874 87 41 0 163 249 436 522 1.69e-23 99.4
Msa1374250 AT1G51800.1 37.222 180 82 5 21 178 272 442 6.11e-25 103
Msa1374250 AT1G51800.1 48.276 87 44 1 163 249 572 657 5.90e-19 86.3
Msa1374250 AT1G51820.2 51.724 87 42 0 163 249 302 388 2.34e-24 102
Msa1374250 AT1G51820.2 34.591 159 84 5 29 168 12 169 1.12e-17 82.4
Msa1374250 AT3G46420.1 38.824 170 84 6 16 166 269 437 2.71e-24 101
Msa1374250 AT3G46420.1 47.436 78 41 0 172 249 526 603 5.08e-19 86.3
Msa1374250 AT1G51820.1 51.724 87 42 0 163 249 564 650 3.00e-24 101
Msa1374250 AT1G51820.1 34.615 182 99 5 4 166 249 429 1.04e-22 97.1
Msa1374250 AT1G51850.2 51.724 87 42 0 163 249 564 650 6.06e-24 100
Msa1374250 AT1G51850.2 35.165 182 98 5 4 166 249 429 1.03e-21 94.4
Msa1374250 AT1G51850.1 51.724 87 42 0 163 249 544 630 6.38e-24 100
Msa1374250 AT1G51850.1 35.165 182 98 5 4 166 229 409 1.33e-21 94.0
Msa1374250 AT3G46340.1 36.757 185 93 7 4 166 258 440 7.93e-24 100
Msa1374250 AT3G46340.1 46.591 88 46 1 163 249 571 658 1.12e-18 85.5
Msa1374250 AT5G59616.1 39.726 146 61 5 21 146 12 150 1.53e-23 93.2
Msa1374250 AT1G49100.1 32.787 183 93 4 9 166 263 440 3.12e-23 98.6
Msa1374250 AT1G49100.1 45.977 87 47 0 163 249 567 653 1.61e-19 87.8
Msa1374250 AT1G51910.1 55.682 88 37 2 163 249 559 645 3.29e-23 98.6
Msa1374250 AT1G51910.1 41.718 163 70 4 22 162 275 434 1.80e-21 93.6
Msa1374250 AT2G28970.2 50.575 87 43 0 163 249 430 516 1.20e-22 97.1
Msa1374250 AT2G28970.2 34.783 184 100 5 2 166 118 300 1.44e-21 94.0
Msa1374250 AT2G28970.1 50.575 87 43 0 163 249 465 551 1.24e-22 97.1
Msa1374250 AT2G28970.1 34.783 184 100 5 2 166 153 335 1.55e-21 94.0
Msa1374250 AT3G46330.2 38.415 164 82 5 22 166 276 439 1.51e-22 96.7
Msa1374250 AT3G46330.2 43.678 87 49 0 163 249 528 614 3.03e-18 84.3
Msa1374250 AT3G46330.1 38.415 164 82 5 22 166 276 439 1.53e-22 96.7
Msa1374250 AT3G46330.1 43.678 87 49 0 163 249 552 638 2.99e-18 84.3
Msa1374250 AT5G59650.1 39.459 185 87 8 4 166 257 438 1.66e-22 96.7
Msa1374250 AT5G59650.1 48.276 87 45 0 163 249 565 651 5.22e-16 77.8
Msa1374250 AT2G19190.1 34.659 176 97 5 8 166 267 441 1.44e-21 94.0
Msa1374250 AT2G19190.1 48.485 99 48 2 153 249 548 645 5.28e-21 92.4
Msa1374250 AT2G28990.2 49.425 87 44 0 163 249 563 649 2.05e-21 93.6
Msa1374250 AT2G28990.2 34.759 187 96 7 2 166 250 432 3.43e-20 89.7
Msa1374250 AT2G28990.1 49.425 87 44 0 163 249 563 649 2.05e-21 93.6
Msa1374250 AT2G28990.1 34.759 187 96 7 2 166 250 432 3.43e-20 89.7
Msa1374250 AT5G59670.2 48.889 90 46 0 160 249 547 636 2.12e-21 93.6
Msa1374250 AT5G59670.2 36.747 166 85 6 21 166 272 437 6.26e-20 89.0
Msa1374250 AT5G59670.1 48.889 90 46 0 160 249 547 636 2.12e-21 93.6
Msa1374250 AT5G59670.1 36.747 166 85 6 21 166 272 437 6.26e-20 89.0
Msa1374250 AT4G20450.1 50.000 94 45 1 156 249 572 663 2.35e-21 93.2
Msa1374250 AT4G20450.1 35.152 165 87 5 22 166 293 457 2.08e-19 87.4
Msa1374250 AT4G20450.2 50.000 94 45 1 156 249 572 663 2.64e-21 93.2
Msa1374250 AT4G20450.2 35.152 165 87 5 22 166 293 457 2.24e-19 87.4
Msa1374250 AT1G07560.1 51.190 84 41 0 166 249 559 642 4.70e-21 92.4
Msa1374250 AT1G07560.1 35.366 164 86 5 22 166 277 439 2.23e-18 84.7
Msa1374250 AT2G14510.2 50.000 88 43 1 162 249 556 642 4.71e-21 92.4
Msa1374250 AT2G14510.2 31.285 179 100 7 4 162 267 442 1.65e-16 79.0
Msa1374250 AT2G14510.1 50.000 88 43 1 162 249 548 634 5.07e-21 92.4
Msa1374250 AT2G14510.1 31.285 179 100 7 4 162 259 434 1.93e-16 79.0
Msa1374250 AT2G28960.1 43.689 103 53 1 152 249 411 513 5.10e-21 92.4
Msa1374250 AT2G28960.1 37.423 163 82 7 23 166 142 303 1.84e-17 82.0
Msa1374250 AT5G16900.1 50.617 81 40 0 169 249 565 645 6.42e-21 92.0
Msa1374250 AT5G16900.1 30.636 173 92 6 22 166 269 441 2.34e-13 69.7
Msa1374250 AT5G16900.3 50.617 81 40 0 169 249 565 645 6.42e-21 92.0
Msa1374250 AT5G16900.3 30.636 173 92 6 22 166 269 441 2.34e-13 69.7
Msa1374250 AT2G28960.2 43.689 103 53 1 152 249 543 645 6.57e-21 92.0
Msa1374250 AT2G28960.2 37.423 163 82 7 23 166 274 435 2.30e-17 81.6
Msa1374250 AT5G16900.4 50.617 81 40 0 169 249 379 459 6.63e-21 92.0
Msa1374250 AT5G16900.4 30.636 173 92 6 22 166 83 255 1.33e-13 70.5
Msa1374250 AT2G14440.1 50.000 88 43 1 162 249 549 635 8.79e-21 91.7
Msa1374250 AT2G14440.1 31.492 181 97 6 4 162 260 435 6.03e-19 86.3
Msa1374250 AT1G51790.2 30.857 175 105 4 8 166 264 438 3.19e-20 90.1
Msa1374250 AT1G51790.2 42.857 84 47 1 166 249 618 700 5.37e-14 71.6
Msa1374250 AT1G51790.3 30.857 175 105 4 8 166 264 438 3.88e-20 89.7
Msa1374250 AT1G51790.3 42.857 84 47 1 166 249 566 648 6.33e-14 71.6
Msa1374250 AT1G51790.1 30.857 175 105 4 8 166 264 438 3.88e-20 89.7
Msa1374250 AT1G51790.1 42.857 84 47 1 166 249 566 648 6.33e-14 71.6
Msa1374250 AT1G07550.1 33.516 182 101 6 4 166 257 437 7.28e-20 89.0
Msa1374250 AT1G07550.1 45.238 84 45 1 166 249 549 631 3.96e-17 80.9
Msa1374250 AT2G29000.1 47.126 87 46 0 163 249 551 637 8.99e-20 88.6
Msa1374250 AT2G29000.1 37.576 165 81 6 22 166 271 433 1.81e-16 79.0
Msa1374250 AT5G59650.2 36.269 193 90 9 4 166 257 446 2.86e-18 84.3
Msa1374250 AT5G59650.2 48.276 87 45 0 163 249 573 659 4.99e-16 77.8
Msa1374250 AT5G59660.2 38.060 134 64 5 52 166 222 355 1.14e-16 79.7
Msa1374250 AT5G59660.2 48.611 72 37 0 154 225 465 536 6.13e-14 71.6
Msa1374250 AT5G59660.3 38.060 134 64 5 52 166 244 377 1.40e-16 79.3
Msa1374250 AT5G59660.3 48.611 72 37 0 154 225 490 561 6.47e-14 71.6
Msa1374250 AT5G59660.1 38.060 134 64 5 52 166 244 377 1.42e-16 79.3
Msa1374250 AT5G59660.1 48.611 72 37 0 154 225 487 558 6.52e-14 71.2
Msa1374250 AT4G29180.3 44.330 97 41 1 166 249 553 649 3.28e-16 78.2
Msa1374250 AT4G29180.3 29.932 147 92 3 2 138 262 407 1.28e-13 70.5
Msa1374250 AT4G29180.1 44.330 97 41 1 166 249 554 650 3.31e-16 78.2
Msa1374250 AT4G29180.2 44.330 97 41 1 166 249 556 652 3.61e-16 78.2
Msa1374250 AT4G29180.2 29.932 147 92 3 2 138 262 407 1.35e-13 70.5
Msa1374250 AT4G29450.1 43.750 96 42 2 166 249 555 650 7.56e-16 77.0
Msa1374250 AT4G29450.1 29.134 127 80 2 21 137 281 407 1.20e-12 67.8
Msa1374250 AT1G51620.2 48.193 83 42 1 167 249 37 118 3.55e-15 74.3
Msa1374250 AT5G16900.2 48.529 68 35 0 169 236 565 632 1.60e-14 73.2
Msa1374250 AT5G16900.2 30.636 173 92 6 22 166 269 441 4.20e-13 68.9
Msa1374250 AT1G10620.1 41.111 90 51 1 153 240 344 433 6.59e-14 71.2
Msa1374250 AT5G61350.1 36.752 117 67 3 140 249 481 597 2.20e-13 69.7
Msa1374250 AT5G28680.1 39.394 99 55 2 156 249 495 593 2.95e-13 69.3
Msa1374250 AT5G28680.2 39.394 99 55 2 156 249 495 593 2.95e-13 69.3
Msa1374250 AT3G04690.1 39.394 99 55 2 156 249 491 589 4.16e-13 68.9
Msa1374250 AT1G79620.3 41.758 91 50 2 153 240 611 701 4.27e-13 68.9
Msa1374250 AT1G79620.2 41.758 91 50 2 153 240 611 701 4.86e-13 68.9
Msa1374250 AT1G79620.1 41.758 91 50 2 153 240 611 701 5.31e-13 68.9
Msa1374250 AT1G79620.5 41.758 91 50 2 153 240 637 727 5.34e-13 68.9
Msa1374250 AT5G54590.1 34.167 120 72 1 137 249 66 185 1.06e-12 66.2
Msa1374250 AT1G23540.1 37.778 90 54 1 153 240 345 434 1.46e-12 67.4
Msa1374250 AT5G54590.3 33.600 125 76 1 132 249 61 185 1.52e-12 67.0
Msa1374250 AT5G54590.4 33.600 125 76 1 132 249 61 185 1.52e-12 67.0
Msa1374250 AT5G54590.2 33.600 125 76 1 132 249 61 185 1.52e-12 67.0
Msa1374250 AT1G23540.2 37.778 90 54 1 153 240 345 434 1.55e-12 67.0
Msa1374250 AT4G39110.1 39.506 81 47 1 171 249 518 598 1.76e-12 67.0
Msa1374250 AT4G32710.1 39.796 98 56 2 154 249 365 461 1.85e-12 67.0
Msa1374250 AT1G49270.1 36.471 85 52 1 167 249 324 408 2.55e-12 66.6
Msa1374250 AT3G24790.1 31.667 120 78 3 134 249 1 120 6.23e-12 65.1
Msa1374250 AT3G24790.2 31.667 120 78 3 134 249 19 138 7.15e-12 65.1
Msa1374250 AT3G24550.1 38.824 85 50 1 167 249 268 352 7.50e-12 65.1
Msa1374250 AT2G21480.1 37.037 81 49 1 171 249 517 597 8.05e-12 65.1
Msa1374250 AT1G70460.1 40.789 76 43 1 167 240 341 416 1.33e-11 64.7
Msa1374250 AT5G54380.1 32.941 85 55 1 167 249 498 582 1.92e-11 63.9
Msa1374250 AT2G37050.2 38.961 77 46 1 171 246 597 673 2.52e-11 63.5
Msa1374250 AT2G37050.4 38.961 77 46 1 171 246 598 674 2.52e-11 63.5
Msa1374250 AT2G37050.1 38.961 77 46 1 171 246 597 673 3.26e-11 63.5
Msa1374250 AT1G70450.1 36.364 88 54 1 155 240 25 112 3.30e-11 63.2
Msa1374250 AT2G37050.3 38.961 77 46 1 171 246 598 674 3.33e-11 63.5
Msa1374250 AT3G18810.1 35.294 85 53 1 167 249 325 409 3.37e-11 63.2
Msa1374250 AT4G23180.3 33.333 111 72 1 141 249 310 420 4.32e-11 62.8
Msa1374250 AT4G23180.1 36.559 93 57 1 159 249 328 420 5.69e-11 62.8
Msa1374250 AT4G23180.2 33.333 111 72 1 141 249 310 420 6.42e-11 62.4
Msa1374250 AT3G24540.1 36.471 85 52 1 167 249 171 255 7.31e-11 62.0
Msa1374250 AT5G15730.1 36.170 94 55 1 156 249 98 186 7.39e-11 62.0
Msa1374250 AT5G15730.3 36.170 94 55 1 156 249 98 186 7.83e-11 62.0
Msa1374250 AT5G15730.2 36.170 94 55 1 156 249 98 186 7.83e-11 62.0
Msa1374250 AT5G56890.1 35.556 90 56 1 162 249 706 795 8.07e-11 62.4
Msa1374250 AT3G51550.1 34.000 100 63 2 153 249 510 609 8.74e-11 62.0
Msa1374250 AT1G52290.2 37.647 85 51 1 167 249 131 215 8.93e-11 61.6

Find 54 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAACTTCCAGCGGTTTAAT+TGG 0.192363 tig0019471:-89036 Msa1374250:intron
TTTGATTTGCATCGAGCTTC+TGG 0.227717 tig0019471:+90731 None:intergenic
AAATACTTGACAGGTCTTAT+AGG 0.242464 tig0019471:-87312 Msa1374250:CDS
CTAAATGTGAAGTCAACTTA+TGG 0.264476 tig0019471:-89233 Msa1374250:intron
TTAATTGGAACTATAGCTTC+TGG 0.326254 tig0019471:-89021 Msa1374250:CDS
AATACTTGACAGGTCTTATA+GGG 0.376188 tig0019471:-87311 Msa1374250:CDS
CAATGTCGTCGAGACATATA+TGG 0.381553 tig0019471:-90551 Msa1374250:CDS
TAAATGTGAAGTCAACTTAT+GGG 0.390794 tig0019471:-89232 Msa1374250:intron
TACCAACATAGCTGCAGTTT+AGG 0.411492 tig0019471:+89154 None:intergenic
CTTATGGGATCAAGAGAAAC+TGG 0.413837 tig0019471:-89217 Msa1374250:CDS
GAAGATACAAAGGAATGAAT+AGG 0.428109 tig0019471:+90662 None:intergenic
TTTGAAAAGGTTGTGGAGAA+AGG 0.428970 tig0019471:-87583 Msa1374250:CDS
CAGAAACTTTGAAAAGGTTG+TGG 0.430911 tig0019471:-87590 Msa1374250:CDS
ATATTCTATTGACTTCAGAT+TGG 0.437899 tig0019471:+88993 None:intergenic
CTAAGCTGCCAGTGACAACT+TGG 0.444235 tig0019471:-90818 Msa1374250:intron
TAATTGGAACTATAGCTTCT+GGG 0.444237 tig0019471:-89020 Msa1374250:CDS
GTGAAACGAAGTTGGAACTT+TGG 0.448803 tig0019471:-90612 Msa1374250:CDS
GTTGTGGAGAAAGGAGCATC+TGG 0.469808 tig0019471:-87574 Msa1374250:CDS
CTTATAGGGTATTGTGATGA+TGG 0.472954 tig0019471:-87297 Msa1374250:CDS
GGCCTAAACTGCAGCTATGT+TGG 0.481031 tig0019471:-89156 Msa1374250:CDS
GGCATTATACTTGGGAAGGA+AGG 0.485026 tig0019471:+90789 None:intergenic
ATATGTGGAGGCATTATACT+TGG 0.487647 tig0019471:+90780 None:intergenic
CTGGAACAGTCTACCATGGC+TGG 0.488403 tig0019471:-87555 Msa1374250:CDS
GGAAAATTCCAAGTTGTCAC+TGG 0.491907 tig0019471:+90810 None:intergenic
AGTTATTAGTGAAACGAAGT+TGG 0.493413 tig0019471:-90620 Msa1374250:CDS
GTACTCCAGTGTCTTACTTG+TGG 0.508313 tig0019471:-89182 Msa1374250:CDS
CATTACCAGAAACTTTGAAA+AGG 0.512003 tig0019471:-87596 Msa1374250:CDS
ACTTACAAGTATATGATCCT+TGG 0.514030 tig0019471:+89123 None:intergenic
AAGTAAGACACTGGAGTACA+AGG 0.521279 tig0019471:+89186 None:intergenic
ACTCTAGATTAGAGCCATGT+TGG 0.527280 tig0019471:+87272 None:intergenic
GTTCATCATAAATACTTGAC+AGG 0.530148 tig0019471:-87321 Msa1374250:CDS
CCAGTGTCTTACTTGTGGAA+TGG 0.545016 tig0019471:-89177 Msa1374250:CDS
TAATAACTGATATATAATAC+AGG 0.545081 tig0019471:+90635 None:intergenic
GTCTCGACGACATTGAATAG+TGG 0.551109 tig0019471:+90559 None:intergenic
CAGATATCCTTGAGTTGATG+AGG 0.561128 tig0019471:+87492 None:intergenic
GTGCATGTACACATAATATG+TGG 0.566614 tig0019471:+90765 None:intergenic
TGGGATCAAGAGAAACTGGC+AGG 0.578914 tig0019471:-89213 Msa1374250:CDS
CTATCTTCCTCATCAACTCA+AGG 0.579253 tig0019471:-87499 Msa1374250:CDS
TGGAGGCATTATACTTGGGA+AGG 0.584867 tig0019471:+90785 None:intergenic
AAACTGCAGCTATGTTGGTA+CGG 0.585202 tig0019471:-89151 Msa1374250:CDS
TACAGGTTCTGAAGATACAA+AGG 0.605212 tig0019471:+90652 None:intergenic
CCATTCCACAAGTAAGACAC+TGG 0.617935 tig0019471:+89177 None:intergenic
CGTCGAGACATATATGGCAA+AGG 0.622385 tig0019471:-90545 Msa1374250:CDS
TATGTGGAGGCATTATACTT+GGG 0.630511 tig0019471:+90781 None:intergenic
AGCATTAACCATGACATGAG+GGG 0.634567 tig0019471:-90956 None:intergenic
TATCATGATCAATCCAGCCA+TGG 0.635701 tig0019471:+87542 None:intergenic
TCAGAAACATATCAAACCGA+TGG 0.637155 tig0019471:-90511 Msa1374250:intron
TCGACGACATTGAATAGTGG+TGG 0.637303 tig0019471:+90562 None:intergenic
ATATCTGCAATTTCAAGCAG+AGG 0.641697 tig0019471:-87476 Msa1374250:intron
CATGTACACATAATATGTGG+AGG 0.657421 tig0019471:+90768 None:intergenic
GCATCTGGAACAGTCTACCA+TGG 0.666857 tig0019471:-87559 Msa1374250:CDS
ATGTTGGTACGGATTCGCCA+AGG 0.677061 tig0019471:-89140 Msa1374250:CDS
CTGGATTGATCATGATACTG+AGG 0.708911 tig0019471:-87536 Msa1374250:CDS
TTGTGATGATGGCACCAACA+TGG 0.719558 tig0019471:-87286 Msa1374250:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTATATTTTTATTAAA+TGG - tig0019471:87994-88013 Msa1374250:intron 0.0%
!!! TTTTTTATTTTTATTTTAAT+TGG + tig0019471:88735-88754 None:intergenic 0.0%
!!! AAAATAAAAAAACAGTTTTT+TGG - tig0019471:88329-88348 Msa1374250:intron 10.0%
!!! TAAATATTTTTCTGATTTTT+TGG - tig0019471:88654-88673 Msa1374250:intron 10.0%
!!! TTTTATTTCTTCTTTATATT+TGG - tig0019471:89916-89935 Msa1374250:intron 10.0%
!! ATTTATATATCAAAAATGTA+TGG - tig0019471:90110-90129 Msa1374250:intron 10.0%
!! ATAAAAATAGATGATTTAAT+TGG - tig0019471:90390-90409 Msa1374250:intron 10.0%
!! TAAAAATAGATGATTTAATT+GGG - tig0019471:90391-90410 Msa1374250:intron 10.0%
!! TAATAACTGATATATAATAC+AGG + tig0019471:87584-87603 None:intergenic 15.0%
!! TTTAAAAATAAAATCTGATG+TGG + tig0019471:88040-88059 None:intergenic 15.0%
!!! ATTTTTCTACTAAAAAAATC+TGG + tig0019471:88308-88327 None:intergenic 15.0%
!!! TACTTCGTTTTTTTTAAATT+AGG + tig0019471:88438-88457 None:intergenic 15.0%
!!! TCTATTTTTATTCTATTGTT+CGG + tig0019471:90381-90400 None:intergenic 15.0%
!! ATAATTTGACAATTTATGAT+CGG - tig0019471:90519-90538 Msa1374250:CDS 15.0%
!!! AGTTCAACATTTTTGTAAAT+GGG - tig0019471:87514-87533 Msa1374250:CDS 20.0%
!! TCTGAAAAAAAAAATTTACG+AGG + tig0019471:87917-87936 None:intergenic 20.0%
!!! GGAAAAAAAATAATTTTACG+AGG - tig0019471:88821-88840 Msa1374250:intron 20.0%
!! TCAATTAATTATATTGCTTG+AGG - tig0019471:89442-89461 Msa1374250:intron 20.0%
!!! TTTTATTTACTGAAGAAACT+TGG - tig0019471:89517-89536 Msa1374250:intron 20.0%
!! AAAACTATACAAATTATGCA+AGG + tig0019471:89620-89639 None:intergenic 20.0%
!! TAGCCAAGTAATATATTAAT+GGG + tig0019471:89656-89675 None:intergenic 20.0%
!! AACTTTAAATAGAACATACT+TGG + tig0019471:90035-90054 None:intergenic 20.0%
!! GAGTTCAACATTTTTGTAAA+TGG - tig0019471:87513-87532 Msa1374250:CDS 25.0%
! AACTAAATAGTACATACCAT+CGG + tig0019471:87724-87743 None:intergenic 25.0%
! TTCTTACAATCTTATTCGTA+TGG - tig0019471:87820-87839 Msa1374250:intron 25.0%
! TCTTACAATCTTATTCGTAT+GGG - tig0019471:87821-87840 Msa1374250:intron 25.0%
! GGTAAGACATTTAAAAATTC+TGG + tig0019471:88417-88436 None:intergenic 25.0%
! GAAATAACCTATATTACAGA+GGG - tig0019471:88882-88901 Msa1374250:intron 25.0%
! TAGCATCAACTATTATCATA+AGG + tig0019471:88961-88980 None:intergenic 25.0%
! TAAATGTGAAGTCAACTTAT+GGG - tig0019471:88984-89003 Msa1374250:intron 25.0%
! TCATATACTTGTAAGTTATG+TGG - tig0019471:89100-89119 Msa1374250:intron 25.0%
!!! ATATTCTATTGACTTCAGAT+TGG + tig0019471:89226-89245 None:intergenic 25.0%
! GATCACAAAATAGAATGTTA+AGG - tig0019471:89302-89321 Msa1374250:intron 25.0%
!!! CAAGGTTTATTTTTCTTTTG+GGG + tig0019471:89602-89621 None:intergenic 25.0%
!!! GCAAGGTTTATTTTTCTTTT+GGG + tig0019471:89603-89622 None:intergenic 25.0%
!!! TGCAAGGTTTATTTTTCTTT+TGG + tig0019471:89604-89623 None:intergenic 25.0%
! TACCCCATTAATATATTACT+TGG - tig0019471:89650-89669 Msa1374250:intron 25.0%
! AGCCAAGTAATATATTAATG+GGG + tig0019471:89655-89674 None:intergenic 25.0%
! GTAGCCAAGTAATATATTAA+TGG + tig0019471:89657-89676 None:intergenic 25.0%
!! TTGTCGCTTCATTAAATATA+AGG - tig0019471:89830-89849 Msa1374250:intron 25.0%
!! AGCTAATACAATTTTTACGA+GGG + tig0019471:89944-89963 None:intergenic 25.0%
!! AAGCTAATACAATTTTTACG+AGG + tig0019471:89945-89964 None:intergenic 25.0%
!!! GTGTGATTTTTAAGATAATC+AGG - tig0019471:90474-90493 Msa1374250:intron 25.0%
! ACAATTTATGATCGGTAAAT+TGG - tig0019471:90527-90546 Msa1374250:CDS 25.0%
GAAGATACAAAGGAATGAAT+AGG + tig0019471:87557-87576 None:intergenic 30.0%
AGTTATTAGTGAAACGAAGT+TGG - tig0019471:87596-87615 Msa1374250:CDS 30.0%
CATGTAAATAATGAAGTGCA+TGG + tig0019471:87795-87814 None:intergenic 30.0%
CATGCACTTCATTATTTACA+TGG - tig0019471:87793-87812 Msa1374250:intron 30.0%
ACCAAACCGAAAATTTCTTA+GGG + tig0019471:87888-87907 None:intergenic 30.0%
AACCAAACCGAAAATTTCTT+AGG + tig0019471:88849-88868 None:intergenic 30.0%
TGGAAAATTAATTTCACACG+TGG + tig0019471:88020-88039 None:intergenic 30.0%
! TGTAAAATGTTTTTCACACG+TGG - tig0019471:88709-88728 Msa1374250:intron 30.0%
AAACCAAACCGAAAATTTCT+TGG - tig0019471:88848-88867 Msa1374250:intron 30.0%
AACCAAACCGAAAATTTCTT+GGG - tig0019471:88849-88868 Msa1374250:intron 30.0%
GGAAATAACCTATATTACAG+AGG - tig0019471:88881-88900 Msa1374250:intron 30.0%
!!! GTTTTTTCCCTCTGTAATAT+AGG + tig0019471:88892-88911 None:intergenic 30.0%
CTATACAGTGAATACGAATA+GGG + tig0019471:88923-88942 None:intergenic 30.0%
ACTATACAGTGAATACGAAT+AGG + tig0019471:88924-88943 None:intergenic 30.0%
! CATAAGTTGACTTCACATTT+AGG + tig0019471:88985-89004 None:intergenic 30.0%
CTAAATGTGAAGTCAACTTA+TGG - tig0019471:88983-89002 Msa1374250:intron 30.0%
ACTTACAAGTATATGATCCT+TGG + tig0019471:89096-89115 None:intergenic 30.0%
TTAATTGGAACTATAGCTTC+TGG - tig0019471:89195-89214 Msa1374250:CDS 30.0%
TAATTGGAACTATAGCTTCT+GGG - tig0019471:89196-89215 Msa1374250:CDS 30.0%
TTGTCGAATAACAATTTGAC+TGG - tig0019471:89327-89346 Msa1374250:intron 30.0%
ATCTTCATCTAAGTTATCCT+AGG - tig0019471:89406-89425 Msa1374250:intron 30.0%
ATTTACTGAAGAAACTTGGA+AGG - tig0019471:89521-89540 Msa1374250:intron 30.0%
! GCTACTCTAAACAATTTTGT+TGG - tig0019471:89672-89691 Msa1374250:intron 30.0%
! CTAATACAATTTTTACGAGG+GGG + tig0019471:89942-89961 None:intergenic 30.0%
! GCTAATACAATTTTTACGAG+GGG + tig0019471:89943-89962 None:intergenic 30.0%
! ATTACTGTATGTGCAAGTTT+TGG - tig0019471:90168-90187 Msa1374250:intron 30.0%
ATTCATGCAACAAGAGAAAT+GGG - tig0019471:90217-90236 Msa1374250:intron 30.0%
! CATTACCAGAAACTTTGAAA+AGG - tig0019471:90620-90639 Msa1374250:CDS 30.0%
ATGAACTACAGCAAAAAGTT+TGG + tig0019471:90881-90900 None:intergenic 30.0%
GTTCATCATAAATACTTGAC+AGG - tig0019471:90895-90914 Msa1374250:intron 30.0%
! AAATACTTGACAGGTCTTAT+AGG - tig0019471:90904-90923 Msa1374250:intron 30.0%
! AATACTTGACAGGTCTTATA+GGG - tig0019471:90905-90924 Msa1374250:intron 30.0%
! AGTTTTCACTATGCAACCAT+AGG + tig0019471:87373-87392 None:intergenic 35.0%
!! TATGTGGAGGCATTATACTT+GGG + tig0019471:87438-87457 None:intergenic 35.0%
!! ATATGTGGAGGCATTATACT+TGG + tig0019471:87439-87458 None:intergenic 35.0%
CATGTACACATAATATGTGG+AGG + tig0019471:87451-87470 None:intergenic 35.0%
GTGCATGTACACATAATATG+TGG + tig0019471:87454-87473 None:intergenic 35.0%
!! TACAGGTTCTGAAGATACAA+AGG + tig0019471:87567-87586 None:intergenic 35.0%
TCAGAAACATATCAAACCGA+TGG - tig0019471:87705-87724 Msa1374250:intron 35.0%
! TTCCTTTTGTAGTCATTTCC+AGG - tig0019471:87856-87875 Msa1374250:intron 35.0%
AACCTGGAAATGACTACAAA+AGG + tig0019471:87861-87880 None:intergenic 35.0%
AAACCGAAAATTTCTTAGGG+GGG + tig0019471:87885-87904 None:intergenic 35.0%
CAAACCGAAAATTTCTTAGG+GGG + tig0019471:87886-87905 None:intergenic 35.0%
CCAAACCGAAAATTTCTTAG+GGG + tig0019471:87887-87906 None:intergenic 35.0%
!! TACATTTTGCTGAGTTGGAT+GGG + tig0019471:88784-88803 None:intergenic 35.0%
!! TTACATTTTGCTGAGTTGGA+TGG + tig0019471:88783-88802 None:intergenic 35.0%
! CGTATTACATTTTGCTGAGT+TGG + tig0019471:88779-88798 None:intergenic 35.0%
ACTCAGCAAAATGTAATACG+TGG - tig0019471:87957-87976 Msa1374250:intron 35.0%
ACTCAGCAAAATGTAATACG+TGG + tig0019471:87957-87976 None:intergenic 35.0%
! CGTATTACATTTTGCTGAGT+TGG - tig0019471:88779-88798 Msa1374250:intron 35.0%
!! TTACATTTTGCTGAGTTGGA+TGG - tig0019471:88783-88802 Msa1374250:intron 35.0%
!! TACATTTTGCTGAGTTGGAT+GGG - tig0019471:88784-88803 Msa1374250:intron 35.0%
! GTTTCCTCCCAAGAAATTTT+CGG + tig0019471:88859-88878 None:intergenic 35.0%
AAATTTCTTGGGAGGAAACT+TGG - tig0019471:88860-88879 Msa1374250:intron 35.0%
AGTTCCTGAAGGATTATCAT+CGG + tig0019471:89146-89165 None:intergenic 35.0%
TTAACTTCCAGCGGTTTAAT+TGG - tig0019471:89180-89199 Msa1374250:CDS 35.0%
TATAGTTCCAATTAAACCGC+TGG + tig0019471:89190-89209 None:intergenic 35.0%
TTGAATAATCAAGTCAGCCT+AGG + tig0019471:89426-89445 None:intergenic 35.0%
TACTATTCTTTGAACGCACA+AGG + tig0019471:90003-90022 None:intergenic 35.0%
ACTAACACATCACGTACAAA+AGG + tig0019471:90080-90099 None:intergenic 35.0%
GATTCATGCAACAAGAGAAA+TGG - tig0019471:90216-90235 Msa1374250:intron 35.0%
GTTCCATTAGTAGTATCAGT+TGG - tig0019471:90252-90271 Msa1374250:intron 35.0%
ATATACTACAAGAGACACCA+AGG - tig0019471:90318-90337 Msa1374250:intron 35.0%
GCTTTCTATTCCATTGACAT+TGG - tig0019471:90349-90368 Msa1374250:intron 35.0%
TCTATTCCATTGACATTGGT+AGG - tig0019471:90353-90372 Msa1374250:intron 35.0%
! CACAACCTTTTCAAAGTTTC+TGG + tig0019471:90628-90647 None:intergenic 35.0%
! CAGAAACTTTGAAAAGGTTG+TGG - tig0019471:90626-90645 Msa1374250:CDS 35.0%
TTTGAAAAGGTTGTGGAGAA+AGG - tig0019471:90633-90652 Msa1374250:CDS 35.0%
ATATCTGCAATTTCAAGCAG+AGG - tig0019471:90740-90759 Msa1374250:CDS 35.0%
CTTGTGAACTGAAGGAATTA+TGG - tig0019471:90834-90853 Msa1374250:intron 35.0%
!! CTTATAGGGTATTGTGATGA+TGG - tig0019471:90919-90938 Msa1374250:intron 35.0%
TACTGAGCATCAATCACCTT+CGG - tig0019471:87343-87362 Msa1374250:intron 40.0%
GGAAAATTCCAAGTTGTCAC+TGG + tig0019471:87409-87428 None:intergenic 40.0%
!! TTTGATTTGCATCGAGCTTC+TGG + tig0019471:87488-87507 None:intergenic 40.0%
GTGAAACGAAGTTGGAACTT+TGG - tig0019471:87604-87623 Msa1374250:CDS 40.0%
CAATGTCGTCGAGACATATA+TGG - tig0019471:87665-87684 Msa1374250:intron 40.0%
! TTCCCCCCCTAAGAAATTTT+CGG - tig0019471:87879-87898 Msa1374250:intron 40.0%
AACCGAAAATTTCTTAGGGG+GGG + tig0019471:87884-87903 None:intergenic 40.0%
! CCCCTAAGAAATTTTCGGTT+TGG - tig0019471:87884-87903 Msa1374250:intron 40.0%
!! ACATTTTGCTGAGTTGGATG+GGG + tig0019471:88785-88804 None:intergenic 40.0%
!! ACATTTTGCTGAGTTGGATG+GGG - tig0019471:88785-88804 Msa1374250:intron 40.0%
! CTCCCAAGAAATTTTCGGTT+TGG + tig0019471:88854-88873 None:intergenic 40.0%
CAAACCGAAAATTTCTTGGG+AGG - tig0019471:88852-88871 Msa1374250:intron 40.0%
CTTATGGGATCAAGAGAAAC+TGG - tig0019471:88999-89018 Msa1374250:CDS 40.0%
AAGTAAGACACTGGAGTACA+AGG + tig0019471:89033-89052 None:intergenic 40.0%
TACCAACATAGCTGCAGTTT+AGG + tig0019471:89065-89084 None:intergenic 40.0%
AAACTGCAGCTATGTTGGTA+CGG - tig0019471:89065-89084 Msa1374250:intron 40.0%
!! TTCTGGAACTTAACTTCCAG+CGG - tig0019471:89171-89190 Msa1374250:CDS 40.0%
AAGGAAATCAGCTATCAGCA+GGG - tig0019471:89540-89559 Msa1374250:intron 40.0%
GCGAATCCCTTCATAACAAT+GGG - tig0019471:89563-89582 Msa1374250:intron 40.0%
CGAATCCCTTCATAACAATG+GGG - tig0019471:89564-89583 Msa1374250:intron 40.0%
TGCTACCCCATTGTTATGAA+GGG + tig0019471:89572-89591 None:intergenic 40.0%
ATGCTACCCCATTGTTATGA+AGG + tig0019471:89573-89592 None:intergenic 40.0%
TCATAACAATGGGGTAGCAT+TGG - tig0019471:89573-89592 Msa1374250:intron 40.0%
TCTCTTGTTGCATGAATCTG+AGG + tig0019471:90214-90233 None:intergenic 40.0%
CAACAAGAGAAATGGGAGTA+AGG - tig0019471:90224-90243 Msa1374250:intron 40.0%
CCACCAACTGATACTACTAA+TGG + tig0019471:90258-90277 None:intergenic 40.0%
CCATTAGTAGTATCAGTTGG+TGG - tig0019471:90255-90274 Msa1374250:intron 40.0%
ATAGAAAGCCAAACCTACCT+TGG + tig0019471:90338-90357 None:intergenic 40.0%
TATCATGATCAATCCAGCCA+TGG + tig0019471:90677-90696 None:intergenic 40.0%
CTGGATTGATCATGATACTG+AGG - tig0019471:90680-90699 Msa1374250:CDS 40.0%
CTATCTTCCTCATCAACTCA+AGG - tig0019471:90717-90736 Msa1374250:CDS 40.0%
!! CAGATATCCTTGAGTTGATG+AGG + tig0019471:90727-90746 None:intergenic 40.0%
ACGATGTTCTTGTGAACTGA+AGG - tig0019471:90826-90845 Msa1374250:intron 40.0%
! GGTTTTCCTTTCTGATTCAC+AGG - tig0019471:90855-90874 Msa1374250:intron 40.0%
AGGTGATTGATGCTCAGTAC+AGG + tig0019471:87342-87361 None:intergenic 45.0%
GGCATTATACTTGGGAAGGA+AGG + tig0019471:87430-87449 None:intergenic 45.0%
!! TGGAGGCATTATACTTGGGA+AGG + tig0019471:87434-87453 None:intergenic 45.0%
TCGACGACATTGAATAGTGG+TGG + tig0019471:87657-87676 None:intergenic 45.0%
GTCTCGACGACATTGAATAG+TGG + tig0019471:87660-87679 None:intergenic 45.0%
CGTCGAGACATATATGGCAA+AGG - tig0019471:87671-87690 Msa1374250:intron 45.0%
!! CATTTTGCTGAGTTGGATGG+GGG + tig0019471:88786-88805 None:intergenic 45.0%
!! TGTAATACGTGGCGCTGATT+TGG - tig0019471:87968-87987 Msa1374250:intron 45.0%
GTACTCCAGTGTCTTACTTG+TGG - tig0019471:89034-89053 Msa1374250:intron 45.0%
CCATTCCACAAGTAAGACAC+TGG + tig0019471:89042-89061 None:intergenic 45.0%
CCAGTGTCTTACTTGTGGAA+TGG - tig0019471:89039-89058 Msa1374250:intron 45.0%
TACGCCGATGATAATCCTTC+AGG - tig0019471:89139-89158 Msa1374250:CDS 45.0%
CCAGAAGCTATAGTTCCTGA+AGG + tig0019471:89157-89176 None:intergenic 45.0%
CCTTCAGGAACTATAGCTTC+TGG - tig0019471:89154-89173 Msa1374250:CDS 45.0%
CGTAGCTGAGATAGGAAATC+AGG + tig0019471:89360-89379 None:intergenic 45.0%
! TCAAGAAGCGTAGCTGAGAT+AGG + tig0019471:89368-89387 None:intergenic 45.0%
GAAGGAAATCAGCTATCAGC+AGG - tig0019471:89539-89558 Msa1374250:intron 45.0%
AGGAAATCAGCTATCAGCAG+GGG - tig0019471:89541-89560 Msa1374250:intron 45.0%
GGCGAATCCCTTCATAACAA+TGG - tig0019471:89562-89581 Msa1374250:intron 45.0%
! AATTGTATTAGCTTCGCCGC+TGG - tig0019471:89951-89970 Msa1374250:intron 45.0%
GAATTGATCCTGATAGCCAG+CGG + tig0019471:89970-89989 None:intergenic 45.0%
GAACGCACAAGGAGTTGTAT+TGG + tig0019471:89992-90011 None:intergenic 45.0%
ACTACAAGAGACACCAAGGT+AGG - tig0019471:90322-90341 Msa1374250:intron 45.0%
AAGAGACACCAAGGTAGGTT+TGG - tig0019471:90327-90346 Msa1374250:intron 45.0%
GTTTGGCCTGTGAATCAGAA+AGG + tig0019471:90864-90883 None:intergenic 45.0%
!! TTGTGATGATGGCACCAACA+TGG - tig0019471:90930-90949 Msa1374250:intron 45.0%
!!! TTTAATATTTTTTTAGTTTT+GGG + tig0019471:88097-88116 None:intergenic 5.0%
!!! TTTTAATATTTTTTTAGTTT+TGG + tig0019471:88098-88117 None:intergenic 5.0%
!!! TTAATTTTTTAAAAAAGAAT+TGG - tig0019471:88525-88544 Msa1374250:intron 5.0%
!!! TAATTTTTTAAAAAAGAATT+GGG - tig0019471:88526-88545 Msa1374250:intron 5.0%
CTAAGCTGCCAGTGACAACT+TGG - tig0019471:87398-87417 Msa1374250:intron 50.0%
AATTTCTTAGGGGGGGAACC+TGG + tig0019471:87877-87896 None:intergenic 50.0%
! TTTGCTGAGTTGGATGGGGT+AGG - tig0019471:88789-88808 Msa1374250:intron 50.0%
! TTGCTGAGTTGGATGGGGTA+GGG - tig0019471:88790-88809 Msa1374250:intron 50.0%
TGGGATCAAGAGAAACTGGC+AGG - tig0019471:89003-89022 Msa1374250:CDS 50.0%
GGCCTAAACTGCAGCTATGT+TGG - tig0019471:89060-89079 Msa1374250:intron 50.0%
ATGTTGGTACGGATTCGCCA+AGG - tig0019471:89076-89095 Msa1374250:intron 50.0%
TCGGCTCCTACCAATGTCAA+TGG + tig0019471:90362-90381 None:intergenic 50.0%
!! GTTGTGGAGAAAGGAGCATC+TGG - tig0019471:90642-90661 Msa1374250:CDS 50.0%
! GCATCTGGAACAGTCTACCA+TGG - tig0019471:90657-90676 Msa1374250:CDS 50.0%
GAGCATCAATCACCTTCGGC+TGG - tig0019471:87347-87366 Msa1374250:intron 55.0%
!! AATCACCTTCGGCTGGCCTA+TGG - tig0019471:87354-87373 Msa1374250:intron 55.0%
! TTGCTGAGTTGGATGGGGGA+GGG + tig0019471:87946-87965 None:intergenic 55.0%
! TTTGCTGAGTTGGATGGGGG+AGG + tig0019471:87947-87966 None:intergenic 55.0%
! TGCTGAGTTGGATGGGGTAG+GGG - tig0019471:88791-88810 Msa1374250:intron 55.0%
!!! GGATGGGGTAGGGGGTATTT+TGG - tig0019471:88800-88819 Msa1374250:intron 55.0%
CTGGAACAGTCTACCATGGC+TGG - tig0019471:90661-90680 Msa1374250:CDS 55.0%
TGCAACCATAGGCCAGCCGA+AGG + tig0019471:87362-87381 None:intergenic 60.0%
! TGCTGAGTTGGATGGGGGAG+GGG + tig0019471:87945-87964 None:intergenic 60.0%
! GCTGAGTTGGATGGGGTAGG+GGG - tig0019471:88792-88811 Msa1374250:intron 60.0%
! TAGCTTCGCCGCTGGCTATC+AGG - tig0019471:89959-89978 Msa1374250:intron 60.0%
Chromosome Type Strat End Strand Name
tig0019471 gene 87275 90963 87275 ID=Msa1374250;Name=Msa1374250
tig0019471 mRNA 87275 90963 87275 ID=Msa1374250-mRNA-1;Parent=Msa1374250;Name=Msa1374250-mRNA-1;_AED=0.25;_eAED=0.26;_QI=0|0|0|0.83|0.4|0.5|6|0|249
tig0019471 exon 90957 90963 90957 ID=Msa1374250-mRNA-1:exon:3808;Parent=Msa1374250-mRNA-1
tig0019471 exon 90512 90835 90512 ID=Msa1374250-mRNA-1:exon:3807;Parent=Msa1374250-mRNA-1
tig0019471 exon 89129 89243 89129 ID=Msa1374250-mRNA-1:exon:3806;Parent=Msa1374250-mRNA-1
tig0019471 exon 88991 89047 88991 ID=Msa1374250-mRNA-1:exon:3805;Parent=Msa1374250-mRNA-1
tig0019471 exon 87477 87636 87477 ID=Msa1374250-mRNA-1:exon:3804;Parent=Msa1374250-mRNA-1
tig0019471 exon 87275 87361 87275 ID=Msa1374250-mRNA-1:exon:3803;Parent=Msa1374250-mRNA-1
tig0019471 CDS 90957 90963 90957 ID=Msa1374250-mRNA-1:cds;Parent=Msa1374250-mRNA-1
tig0019471 CDS 90512 90835 90512 ID=Msa1374250-mRNA-1:cds;Parent=Msa1374250-mRNA-1
tig0019471 CDS 89129 89243 89129 ID=Msa1374250-mRNA-1:cds;Parent=Msa1374250-mRNA-1
tig0019471 CDS 88991 89047 88991 ID=Msa1374250-mRNA-1:cds;Parent=Msa1374250-mRNA-1
tig0019471 CDS 87477 87636 87477 ID=Msa1374250-mRNA-1:cds;Parent=Msa1374250-mRNA-1
tig0019471 CDS 87275 87361 87275 ID=Msa1374250-mRNA-1:cds;Parent=Msa1374250-mRNA-1
Gene Sequence

>Msa1374250

ATGAGGGCTGCCAGTGACAACTTGGAATTTTCCTTCCTTCCCAAGTATAATGCCTCCACATATTATGTGTACATGCACTTTGCTGAAATCCAGAAGCTCGATGCAAATCAAATTAGAGAGTTCAACATTTTTGTAAATGGGCAGCTTATAAATAGTGACCTATTCATTCCTTTGTATCTTCAGAACCTGTATTATATATCAGTTATTAGTGAAACGAAGTTGGAACTTTGGTTTAATAAGACTAGTAGATCAACTCTTCCACCACTATTCAATGTCGTCGAGACATATATGGCAAAGGACTTCTTACAATCAGAAACATATCAAACCGATGTCAACTTATGGGATCAAGAGAAACTGGCAGGAGATCCTTGTACTCCAGTGTCTTACTTGTGGAATGGCCTAAACTGCAGCTATGTTGGTACGGATTCGCCAAGGATCATATACTTCGGTTTAATTGGAACTATAGCTTCTGGGATATCCAATCTGAAGTCAATAGAATATTTCTATGAAGAAGTGTTAAACATTACCAGAAACTTTGAAAAGGTTGTGGAGAAAGGAGCATCTGGAACAGTCTACCATGGCTGGATTGATCATGATACTGAGGTAGCTGTCAAAATGCTATCTTCCTCATCAACTCAAGGATATCTGCAATTTCAAGCAGAGGCCAAACTTTTTGCTGTAGTTCATCATAAATACTTGACAGGTCTTATAGGGTATTGTGATGATGGCACCAACATGGCTCTAATCTAG
Protein sequence

>Msa1374250

MRAASDNLEFSFLPKYNASTYYVYMHFAEIQKLDANQIREFNIFVNGQLINSDLFIPLYLQNLYYISVISETKLELWFNKTSRSTLPPLFNVVETYMAKDFLQSETYQTDVNLWDQEKLAGDPCTPVSYLWNGLNCSYVGTDSPRIIYFGLIGTIASGISNLKSIEYFYEEVLNITRNFEKVVEKGASGTVYHGWIDHDTEVAVKMLSSSSTQGYLQFQAEAKLFAVVHHKYLTGLIGYCDDGTNMALI*