AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1375470

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1375470 MtrunA17_Chr5g0441131 72.165 194 35 3 12 204 10 185 3.06e-85 249
Msa1375470 MtrunA17_Chr5g0440781 63.731 193 54 5 12 204 13 189 2.82e-77 229
Msa1375470 MtrunA17_Chr5g0440761 63.351 191 61 4 12 202 13 194 3.10e-77 232
Msa1375470 MtrunA17_Chr5g0441141 63.351 191 61 4 12 202 13 194 1.37e-76 231
Msa1375470 MtrunA17_Chr1g0193901 91.753 97 8 0 1 97 1 97 1.14e-49 157
Msa1375470 MtrunA17_Chr1g0193891 91.753 97 8 0 1 97 1 97 1.14e-49 157
Msa1375470 MtrunA17_Chr1g0193871 91.753 97 8 0 1 97 1 97 1.14e-49 157
Msa1375470 MtrunA17_Chr1g0193881 91.753 97 8 0 1 97 1 97 1.14e-49 157
Msa1375470 MtrunA17_Chr1g0154031 46.512 172 83 5 11 178 76 242 3.22e-41 144
Msa1375470 MtrunA17_Chr1g0192411 45.026 191 97 5 10 194 11 199 5.63e-40 140
Msa1375470 MtrunA17_Chr8g0354661 40.500 200 102 7 11 196 37 233 6.71e-40 142
Msa1375470 MtrunA17_Chr3g0099131 55.833 120 51 2 11 130 41 158 2.12e-39 141
Msa1375470 MtrunA17_Chr5g0425591 74.118 85 21 1 12 96 10 93 5.07e-39 129
Msa1375470 MtrunA17_Chr4g0048511 51.562 128 57 4 8 132 10 135 3.09e-37 132
Msa1375470 MtrunA17_Chr3g0080861 50.833 120 57 2 11 130 37 154 6.17e-37 134
Msa1375470 MtrunA17_Chr2g0281071 54.701 117 50 3 8 123 10 124 8.16e-37 131
Msa1375470 MtrunA17_Chr2g0322521 54.622 119 52 2 11 129 29 145 1.36e-36 131
Msa1375470 MtrunA17_Chr2g0323411 53.913 115 50 3 11 124 12 124 1.92e-36 129
Msa1375470 MtrunA17_Chr4g0032401 54.128 109 48 2 7 115 13 119 4.02e-35 126
Msa1375470 MtrunA17_Chr1g0151941 37.368 190 107 6 9 194 10 191 5.08e-35 124
Msa1375470 MtrunA17_Chr5g0395281 40.860 186 91 7 11 190 12 184 6.01e-35 125
Msa1375470 MtrunA17_Chr1g0193371 50.413 121 57 3 4 123 5 123 8.32e-35 126
Msa1375470 MtrunA17_Chr5g0410961 56.190 105 44 2 11 115 12 114 1.39e-34 125
Msa1375470 MtrunA17_Chr7g0270891 43.750 160 84 5 4 161 5 160 1.59e-34 125
Msa1375470 MtrunA17_Chr1g0187761 53.333 105 47 2 11 115 12 114 2.43e-34 122
Msa1375470 MtrunA17_Chr7g0274581 42.857 140 70 3 11 142 12 149 7.78e-34 119
Msa1375470 MtrunA17_Chr3g0115821 50.435 115 54 3 11 124 12 124 1.33e-33 122
Msa1375470 MtrunA17_Chr4g0039971 44.444 144 72 4 11 148 13 154 1.54e-33 122
Msa1375470 MtrunA17_Chr3g0117091 48.031 127 58 4 9 129 10 134 1.54e-33 122
Msa1375470 MtrunA17_Chr1g0193801 49.587 121 58 3 4 123 5 123 2.06e-33 123
Msa1375470 MtrunA17_Chr2g0328771 53.333 105 47 2 11 115 20 122 2.08e-33 121
Msa1375470 MtrunA17_Chr7g0271241 53.271 107 48 2 4 110 5 109 2.20e-33 122
Msa1375470 MtrunA17_Chr1g0211161 49.138 116 56 3 9 123 11 124 2.50e-33 119
Msa1375470 MtrunA17_Chr6g0453751 63.265 98 27 2 7 96 16 112 6.96e-33 115
Msa1375470 MtrunA17_Chr1g0203411 46.847 111 57 2 11 121 12 120 7.42e-33 119
Msa1375470 MtrunA17_Chr1g0167691 50.467 107 51 2 9 115 10 114 8.18e-33 118
Msa1375470 MtrunA17_Chr4g0068061 40.964 166 84 5 11 164 12 175 1.40e-32 119
Msa1375470 MtrunA17_Chr3g0088461 50.000 110 53 2 6 115 17 124 1.57e-32 119
Msa1375470 MtrunA17_Chr4g0058631 47.107 121 61 3 4 123 5 123 1.63e-32 120
Msa1375470 MtrunA17_Chr3g0103281 49.565 115 55 3 11 124 12 124 1.79e-32 119
Msa1375470 MtrunA17_Chr4g0022901 42.647 136 69 3 11 146 13 139 2.97e-32 117
Msa1375470 MtrunA17_Chr8g0385321 50.926 108 51 2 17 123 17 123 2.99e-32 118
Msa1375470 MtrunA17_Chr2g0309911 42.958 142 73 4 1 141 1 135 6.09e-32 117
Msa1375470 MtrunA17_Chr1g0167661 50.467 107 51 2 9 115 10 114 6.60e-32 116
Msa1375470 MtrunA17_Chr2g0323351 50.476 105 50 2 11 115 12 114 1.06e-31 115
Msa1375470 MtrunA17_Chr4g0022931 46.789 109 56 2 11 119 13 119 1.35e-31 115
Msa1375470 MtrunA17_Chr1g0152011 52.830 106 47 3 11 115 12 115 1.38e-31 117
Msa1375470 MtrunA17_Chr8g0342521 47.934 121 60 3 4 123 5 123 1.39e-31 117
Msa1375470 MtrunA17_Chr4g0042671 47.368 114 57 3 11 123 12 123 1.46e-31 118
Msa1375470 MtrunA17_Chr8g0387421 46.957 115 59 2 4 118 5 117 1.79e-31 116
Msa1375470 MtrunA17_Chr6g0450101 43.750 128 70 2 2 129 5 130 1.87e-31 114
Msa1375470 MtrunA17_Chr4g0037141 49.074 108 53 2 17 123 17 123 2.09e-31 115
Msa1375470 MtrunA17_Chr5g0400821 51.887 106 48 3 11 115 12 115 2.13e-31 116
Msa1375470 MtrunA17_Chr3g0131121 49.074 108 53 2 17 123 17 123 3.37e-31 115
Msa1375470 MtrunA17_Chr2g0330041 46.281 121 62 3 4 123 5 123 3.39e-31 117
Msa1375470 MtrunA17_Chr7g0217741 44.800 125 63 4 11 131 12 134 3.72e-31 115
Msa1375470 MtrunA17_Chr7g0228231 49.057 106 52 2 11 116 14 117 3.78e-31 112
Msa1375470 MtrunA17_Chr5g0397231 48.148 108 54 2 4 111 5 110 4.09e-31 115
Msa1375470 MtrunA17_Chr6g0452271 48.696 115 56 3 11 124 12 124 4.40e-31 115
Msa1375470 MtrunA17_Chr4g0022911 42.029 138 76 3 11 146 13 148 5.46e-31 114
Msa1375470 MtrunA17_Chr4g0022881 50.000 104 50 2 12 115 13 114 5.97e-31 113
Msa1375470 MtrunA17_Chr6g0453471 41.304 138 75 4 11 144 12 147 6.26e-31 115
Msa1375470 MtrunA17_Chr8g0342541 47.321 112 57 2 4 115 5 114 7.16e-31 115
Msa1375470 MtrunA17_Chr2g0327351 53.922 102 44 3 11 111 12 111 7.97e-31 114
Msa1375470 MtrunA17_Chr5g0435101 43.860 114 61 3 11 123 11 122 9.06e-31 112
Msa1375470 MtrunA17_Chr3g0135311 44.056 143 73 4 11 148 12 152 1.03e-30 115
Msa1375470 MtrunA17_Chr1g0194301 47.706 109 55 2 11 119 33 139 1.03e-30 113
Msa1375470 MtrunA17_Chr4g0054391 53.465 101 44 3 11 110 12 110 1.15e-30 114
Msa1375470 MtrunA17_Chr4g0028311 51.887 106 48 3 11 115 12 115 1.20e-30 114
Msa1375470 MtrunA17_Chr6g0453211 51.000 100 47 2 11 110 12 109 1.36e-30 114
Msa1375470 MtrunA17_Chr7g0254411 49.524 105 51 2 11 115 12 114 1.47e-30 114
Msa1375470 MtrunA17_Chr7g0264641 45.038 131 66 4 11 137 12 140 1.76e-30 112
Msa1375470 MtrunA17_Chr8g0349261 49.057 106 51 3 11 115 13 116 2.40e-30 113
Msa1375470 MtrunA17_Chr1g0209661 45.872 109 57 2 11 119 27 133 2.43e-30 113
Msa1375470 MtrunA17_Chr4g0060721 50.000 106 50 3 11 115 13 116 3.10e-30 113
Msa1375470 MtrunA17_Chr3g0092401 48.571 105 52 2 11 115 13 115 9.84e-30 111
Msa1375470 MtrunA17_Chr8g0343831 50.000 102 49 2 9 110 6 105 1.36e-29 110
Msa1375470 MtrunA17_Chr4g0072451 43.125 160 42 5 1 158 1 113 1.40e-29 106
Msa1375470 MtrunA17_Chr7g0217221 47.619 105 53 2 11 115 12 114 1.47e-29 110
Msa1375470 MtrunA17_Chr4g0070641 48.936 94 47 1 17 110 17 109 1.72e-29 107
Msa1375470 MtrunA17_Chr1g0186061 48.113 106 53 2 4 109 13 116 1.77e-29 109
Msa1375470 MtrunA17_Chr1g0203441 49.541 109 53 2 7 115 9 115 1.89e-29 110
Msa1375470 MtrunA17_Chr7g0261281 47.619 105 53 2 11 115 12 114 3.16e-29 109
Msa1375470 MtrunA17_Chr8g0346561 49.505 101 49 2 11 111 12 110 3.18e-29 110
Msa1375470 MtrunA17_Chr1g0194951 49.505 101 49 2 11 111 12 110 4.04e-29 111
Msa1375470 MtrunA17_Chr4g0072751 50.980 102 47 3 11 111 12 111 5.02e-29 110
Msa1375470 MtrunA17_Chr4g0055981 44.248 113 61 2 7 119 51 161 5.15e-29 108
Msa1375470 MtrunA17_Chr3g0121241 45.614 114 59 3 11 123 42 153 5.38e-29 109
Msa1375470 MtrunA17_Chr7g0275911 46.316 95 50 1 17 111 17 110 6.96e-29 108
Msa1375470 MtrunA17_Chr6g0470971 47.321 112 57 2 6 117 9 118 1.11e-28 108
Msa1375470 MtrunA17_Chr6g0487491 44.538 119 57 3 10 120 11 128 1.29e-28 107
Msa1375470 MtrunA17_Chr4g0070611 47.525 101 51 2 11 111 12 110 2.00e-28 108
Msa1375470 MtrunA17_Chr4g0013361 39.884 173 92 7 11 179 10 174 3.99e-28 107
Msa1375470 MtrunA17_Chr4g0022891 38.889 144 81 3 11 154 12 148 5.64e-28 105
Msa1375470 MtrunA17_Chr2g0311221 51.961 102 47 2 10 111 13 112 6.70e-28 107
Msa1375470 MtrunA17_Chr1g0168661 47.475 99 51 1 17 115 26 123 1.15e-27 105
Msa1375470 MtrunA17_Chr7g0228891 46.087 115 59 3 11 124 12 124 1.78e-27 105
Msa1375470 MtrunA17_Chr3g0110351 46.087 115 59 3 11 124 12 124 2.21e-27 105
Msa1375470 MtrunA17_Chr5g0434571 46.087 115 59 3 11 124 48 160 2.21e-27 106
Msa1375470 MtrunA17_Chr1g0180391 48.571 105 52 2 11 115 19 121 2.39e-27 103
Msa1375470 MtrunA17_Chr1g0194291 43.119 109 60 2 11 119 21 127 2.69e-27 104
Msa1375470 MtrunA17_Chr4g0044421 46.602 103 53 2 13 115 14 114 2.71e-27 102
Msa1375470 MtrunA17_Chr8g0342481 45.133 113 59 3 4 115 5 115 3.08e-27 106
Msa1375470 MtrunA17_Chr7g0240821 45.098 102 55 1 14 115 3 103 7.11e-27 102
Msa1375470 MtrunA17_Chr4g0057031 44.348 115 61 3 11 124 12 124 1.02e-26 103
Msa1375470 MtrunA17_Chr7g0269831 52.475 101 46 2 11 111 12 110 1.34e-26 104
Msa1375470 MtrunA17_Chr5g0417821 45.614 114 59 3 11 123 7 118 1.50e-26 102
Msa1375470 MtrunA17_Chr3g0099141 58.333 84 33 2 11 94 40 121 1.73e-26 99.0
Msa1375470 MtrunA17_Chr8g0334881 44.643 112 59 3 8 118 7 116 1.75e-25 100
Msa1375470 MtrunA17_Chr2g0293911 44.954 109 58 2 11 119 24 130 2.86e-25 100
Msa1375470 MtrunA17_Chr5g0434931 41.905 105 59 2 11 115 35 137 8.05e-25 98.2
Msa1375470 MtrunA17_Chr5g0434841 44.762 105 56 2 11 115 20 122 2.50e-24 97.4
Msa1375470 MtrunA17_Chr4g0068921 44.762 105 56 2 11 115 24 126 2.54e-24 94.7
Msa1375470 MtrunA17_Chr5g0434911 41.905 105 59 2 11 115 21 123 1.06e-23 95.1
Msa1375470 MtrunA17_Chr5g0434831 42.857 105 58 2 11 115 7 109 1.18e-23 93.2
Msa1375470 MtrunA17_Chr8g0360111 42.574 101 56 2 11 111 25 123 1.75e-23 94.4
Msa1375470 MtrunA17_Chr7g0247131 49.383 81 39 2 44 123 10 89 3.11e-23 93.6
Msa1375470 MtrunA17_Chr2g0327821 41.818 110 62 2 6 115 1 108 4.41e-23 92.8
Msa1375470 MtrunA17_Chr6g0454921 46.809 94 48 2 17 110 18 109 5.85e-23 91.7
Msa1375470 MtrunA17_Chr4g0030881 38.760 129 67 4 5 123 1 127 1.81e-22 91.7
Msa1375470 MtrunA17_Chr5g0401731 47.000 100 50 3 17 115 18 115 3.40e-22 92.0
Msa1375470 MtrunA17_Chr7g0228991 40.000 105 61 2 11 115 29 131 3.46e-22 91.3
Msa1375470 MtrunA17_Chr7g0220341 41.748 103 56 3 11 111 25 125 3.57e-22 90.9
Msa1375470 MtrunA17_Chr3g0133601 41.509 106 60 2 17 122 40 143 4.94e-22 89.7
Msa1375470 MtrunA17_Chr4g0058991 29.902 204 120 5 17 200 212 412 7.82e-22 92.4
Msa1375470 MtrunA17_Chr2g0323321 46.512 86 45 1 1 86 1 85 9.59e-22 85.9
Msa1375470 MtrunA17_Chr3g0117511 39.516 124 71 3 17 138 186 307 1.79e-21 91.3
Msa1375470 MtrunA17_Chr5g0395221 51.316 76 36 1 11 86 12 86 2.97e-21 84.0
Msa1375470 MtrunA17_Chr8g0342511 48.193 83 42 1 4 86 5 86 8.89e-21 82.8
Msa1375470 MtrunA17_Chr4g0042611 45.238 84 45 1 3 86 4 86 1.30e-20 82.0
Msa1375470 MtrunA17_Chr5g0429661 40.909 110 62 3 7 116 116 222 1.87e-20 87.4
Msa1375470 MtrunA17_Chr4g0008551 40.171 117 66 3 17 133 41 153 2.72e-20 87.0
Msa1375470 MtrunA17_Chr6g0460661 38.679 106 63 2 17 122 19 122 2.98e-20 83.6
Msa1375470 MtrunA17_Chr8g0342531 48.718 78 39 1 4 81 5 81 2.91e-19 80.9
Msa1375470 MtrunA17_Chr6g0480581 40.000 95 55 2 17 111 7 99 5.78e-19 81.6
Msa1375470 MtrunA17_Chr4g0053431 44.000 100 53 3 17 115 8 105 9.76e-19 81.6
Msa1375470 MtrunA17_Chr2g0294811 48.684 76 38 1 11 86 12 86 1.71e-18 77.8
Msa1375470 MtrunA17_Chr7g0238631 35.484 155 89 5 6 152 106 257 2.26e-18 82.4
Msa1375470 MtrunA17_Chr7g0238631 35.238 105 59 3 9 110 58 156 1.21e-13 68.9
Msa1375470 MtrunA17_Chr7g0228401 36.585 123 52 3 16 114 257 377 3.25e-18 82.0
Msa1375470 MtrunA17_Chr5g0397841 41.905 105 58 3 6 110 103 204 1.10e-17 80.5
Msa1375470 MtrunA17_Chr5g0437321 42.105 95 53 2 17 111 22 114 1.13e-17 79.0
Msa1375470 MtrunA17_Chr7g0238651 39.423 104 60 2 17 118 10 112 1.93e-17 79.3
Msa1375470 MtrunA17_Chr8g0342461 46.429 84 43 2 4 86 5 87 2.04e-17 75.5
Msa1375470 MtrunA17_Chr8g0342471 46.429 84 43 2 4 86 5 87 6.65e-17 73.9
Msa1375470 MtrunA17_Chr1g0157731 37.273 110 66 3 6 115 84 190 7.08e-17 78.6
Msa1375470 MtrunA17_Chr1g0157731 36.449 107 56 3 9 110 35 134 5.47e-15 72.8
Msa1375470 MtrunA17_Chr3g0139671 37.273 110 66 3 6 115 78 184 9.75e-17 78.2
Msa1375470 MtrunA17_Chr3g0139671 37.383 107 55 3 9 110 29 128 2.47e-15 73.9
Msa1375470 MtrunA17_Chr4g0042501 38.462 104 59 3 17 117 108 209 2.14e-16 76.6
Msa1375470 MtrunA17_Chr3g0125801 39.423 104 58 3 17 117 19 120 6.37e-16 74.3
Msa1375470 MtrunA17_Chr5g0417621 37.500 104 60 3 17 117 137 238 1.15e-15 74.7
Msa1375470 MtrunA17_Chr7g0228531 37.624 101 60 2 17 117 223 320 1.19e-15 74.7
Msa1375470 MtrunA17_Chr6g0460671 33.588 131 85 2 8 138 93 221 1.28e-15 73.9
Msa1375470 MtrunA17_Chr3g0093811 39.560 91 50 3 37 123 4 93 9.10e-15 70.9
Msa1375470 MtrunA17_Chr1g0177901 40.659 91 52 2 24 114 4 92 1.35e-14 69.3
Msa1375470 MtrunA17_Chr7g0229101 45.070 71 38 1 44 114 4 73 1.82e-14 68.9
Msa1375470 MtrunA17_Chr5g0416341 34.921 126 76 3 17 142 29 148 2.17e-14 70.9
Msa1375470 MtrunA17_Chr7g0254261 36.111 108 67 2 17 124 92 197 3.36e-14 70.1
Msa1375470 MtrunA17_Chr7g0229131 41.096 73 42 1 44 116 4 75 4.23e-14 67.4
Msa1375470 MtrunA17_Chr7g0228481 37.755 98 58 2 17 114 223 317 1.01e-13 68.9
Msa1375470 MtrunA17_Chr5g0434901 40.580 69 40 1 46 114 7 74 3.88e-13 63.5
Msa1375470 MtrunA17_Chr8g0362231 33.333 105 68 2 17 121 25 127 1.25e-12 65.9
Msa1375470 MtrunA17_Chr7g0233061 43.077 65 36 1 50 114 213 276 5.15e-12 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1375470 AT2G26960.1 47.170 159 72 5 9 157 18 174 3.79e-40 142
Msa1375470 AT5G55020.1 53.390 118 53 2 11 128 26 141 2.21e-39 141
Msa1375470 AT2G32460.2 43.750 160 79 3 6 165 1 149 2.60e-39 140
Msa1375470 AT2G32460.1 42.945 163 82 3 3 165 10 161 3.32e-39 140
Msa1375470 AT5G06100.1 54.167 120 53 2 11 130 32 149 3.46e-39 139
Msa1375470 AT3G11440.2 53.279 122 55 2 11 132 41 160 5.51e-39 139
Msa1375470 AT5G06100.5 54.167 120 53 2 11 130 32 149 7.86e-39 140
Msa1375470 AT5G06100.2 54.167 120 53 2 11 130 32 149 7.86e-39 140
Msa1375470 AT5G06100.3 54.167 120 53 2 11 130 32 149 7.86e-39 140
Msa1375470 AT5G06100.4 54.167 120 53 2 11 130 32 149 7.86e-39 140
Msa1375470 AT3G11440.3 53.279 122 55 2 11 132 41 160 1.75e-38 139
Msa1375470 AT3G11440.4 53.279 122 55 2 11 132 41 160 1.75e-38 139
Msa1375470 AT3G11440.1 53.279 122 55 2 11 132 41 160 1.75e-38 139
Msa1375470 AT4G26930.1 53.043 115 52 2 11 125 19 131 6.77e-38 135
Msa1375470 AT4G21440.1 40.415 193 107 6 11 200 12 199 2.06e-37 133
Msa1375470 AT5G26660.1 48.855 131 64 3 9 138 10 138 4.48e-36 129
Msa1375470 AT2G26950.1 50.000 124 61 1 5 128 9 131 8.31e-36 129
Msa1375470 AT5G54230.1 51.754 114 52 3 11 123 12 123 2.60e-35 127
Msa1375470 AT4G28110.1 53.509 114 50 3 11 123 12 123 9.92e-35 124
Msa1375470 AT4G05100.1 53.509 114 50 3 11 123 13 124 1.01e-34 125
Msa1375470 AT4G01680.3 49.180 122 59 3 4 124 5 124 1.25e-34 123
Msa1375470 AT1G57560.2 50.000 122 58 3 4 124 5 124 3.01e-34 123
Msa1375470 AT1G57560.1 50.000 122 58 3 4 124 5 124 5.56e-34 123
Msa1375470 AT4G01680.1 49.180 122 59 3 4 124 5 124 9.50e-34 123
Msa1375470 AT5G16770.4 52.381 105 48 2 11 115 12 114 1.75e-33 122
Msa1375470 AT5G16770.3 52.381 105 48 2 11 115 12 114 1.75e-33 122
Msa1375470 AT3G61250.1 48.246 114 56 3 11 123 12 123 2.87e-33 121
Msa1375470 AT5G10280.1 48.780 123 60 3 3 124 4 124 3.38e-33 121
Msa1375470 AT5G16770.1 52.381 105 48 2 11 115 12 114 3.51e-33 121
Msa1375470 AT5G16770.2 52.381 105 48 2 11 115 12 114 3.51e-33 121
Msa1375470 AT1G09540.1 49.587 121 58 3 4 123 5 123 5.31e-33 122
Msa1375470 AT3G08500.1 51.887 106 49 2 10 115 29 132 6.46e-33 121
Msa1375470 AT5G12870.1 52.336 107 49 2 9 115 16 120 8.18e-33 119
Msa1375470 AT3G02940.2 52.381 105 48 2 11 115 12 114 1.89e-32 119
Msa1375470 AT3G02940.1 52.381 105 48 2 11 115 12 114 3.60e-32 119
Msa1375470 AT3G02940.3 52.381 105 48 2 11 115 12 114 3.60e-32 119
Msa1375470 AT3G13890.2 48.214 112 56 2 4 115 5 114 4.30e-32 119
Msa1375470 AT1G22640.1 49.123 114 55 3 11 123 12 123 4.34e-32 117
Msa1375470 AT4G09460.1 49.074 108 53 2 17 123 17 123 5.14e-32 116
Msa1375470 AT4G38620.1 50.926 108 51 2 17 123 17 123 5.77e-32 117
Msa1375470 AT5G65230.1 51.304 115 53 3 11 124 12 124 6.98e-32 117
Msa1375470 AT4G37780.1 51.887 106 48 3 11 115 12 115 9.25e-32 117
Msa1375470 AT5G56110.1 47.826 115 57 3 11 124 12 124 1.16e-31 117
Msa1375470 AT1G34670.1 50.435 115 54 3 11 124 12 124 1.33e-31 118
Msa1375470 AT1G74080.1 45.736 129 66 4 11 138 12 137 1.38e-31 117
Msa1375470 AT1G35515.1 50.000 108 52 2 17 123 17 123 1.40e-31 114
Msa1375470 AT5G15310.4 48.571 105 52 2 11 115 12 114 1.65e-31 115
Msa1375470 AT3G12720.1 46.667 120 61 3 10 128 21 138 2.04e-31 116
Msa1375470 AT4G34990.1 49.074 108 53 2 17 123 17 123 2.36e-31 115
Msa1375470 AT4G17785.2 50.926 108 51 2 8 115 10 115 2.50e-31 117
Msa1375470 AT4G17785.1 50.926 108 51 2 8 115 10 115 2.57e-31 117
Msa1375470 AT3G01140.2 46.087 115 59 3 11 124 12 124 3.41e-31 116
Msa1375470 AT3G01140.1 46.087 115 59 3 11 124 55 167 3.44e-31 117
Msa1375470 AT2G16720.1 45.902 122 63 3 3 123 4 123 3.84e-31 114
Msa1375470 AT5G14750.1 49.074 108 53 2 8 115 13 118 4.08e-31 113
Msa1375470 AT3G28470.1 53.465 101 45 2 11 111 12 110 4.64e-31 115
Msa1375470 AT1G63910.1 47.826 115 58 2 4 118 5 117 4.86e-31 116
Msa1375470 AT5G60890.1 34.314 204 118 7 11 200 12 213 5.58e-31 115
Msa1375470 AT5G52600.1 41.429 140 70 4 11 140 12 149 8.49e-31 112
Msa1375470 AT5G15310.1 46.087 115 59 3 11 124 12 124 8.86e-31 115
Msa1375470 AT5G15310.2 46.087 115 59 3 11 124 12 124 9.23e-31 115
Msa1375470 AT1G74650.1 48.571 105 52 2 11 115 12 114 1.02e-30 115
Msa1375470 AT3G01530.1 44.444 117 60 2 4 116 13 128 1.05e-30 112
Msa1375470 AT3G49690.1 52.830 106 47 3 11 115 12 115 1.50e-30 114
Msa1375470 AT1G08810.1 49.524 105 51 2 11 115 12 114 1.57e-30 113
Msa1375470 AT3G27810.1 49.057 106 52 2 11 116 20 123 1.74e-30 112
Msa1375470 AT5G62470.2 44.526 137 69 4 11 146 12 142 1.93e-30 114
Msa1375470 AT3G27920.1 49.074 108 53 2 8 115 11 116 2.09e-30 112
Msa1375470 AT4G01680.2 45.113 133 58 4 4 123 5 135 2.09e-30 114
Msa1375470 AT5G23000.1 50.467 107 50 3 10 115 11 115 2.33e-30 114
Msa1375470 AT5G40350.1 48.113 106 53 2 11 116 17 120 2.46e-30 111
Msa1375470 AT2G31180.1 35.079 191 111 6 11 195 12 195 2.75e-30 112
Msa1375470 AT3G23250.1 47.619 105 53 2 11 115 12 114 2.81e-30 113
Msa1375470 AT5G57620.1 50.943 106 49 3 11 115 12 115 3.05e-30 114
Msa1375470 AT1G18570.1 46.491 114 58 3 11 123 13 124 3.29e-30 114
Msa1375470 AT1G18710.1 44.348 115 61 3 11 124 12 124 3.64e-30 112
Msa1375470 AT1G06180.1 48.624 109 54 2 11 119 12 118 4.57e-30 111
Msa1375470 AT1G16490.1 50.000 106 51 2 10 115 13 116 7.09e-30 111
Msa1375470 AT3G13540.1 44.262 122 65 3 3 123 15 134 7.73e-30 110
Msa1375470 AT5G40330.1 44.000 125 66 3 12 136 13 133 8.64e-30 110
Msa1375470 AT1G56160.1 50.000 106 51 2 10 115 13 116 1.05e-29 111
Msa1375470 AT5G07690.1 48.571 105 52 2 11 115 12 114 1.15e-29 112
Msa1375470 AT3G47600.1 47.619 105 53 2 11 115 12 114 1.20e-29 112
Msa1375470 AT1G79180.1 46.610 118 59 3 10 125 13 128 1.28e-29 111
Msa1375470 AT2G36890.1 45.690 116 60 3 11 125 12 125 1.29e-29 111
Msa1375470 AT3G28910.1 48.571 105 52 2 11 115 12 114 1.49e-29 112
Msa1375470 AT2G36890.2 45.690 116 60 3 11 125 53 166 2.07e-29 112
Msa1375470 AT5G65790.1 51.887 106 48 3 11 115 12 115 2.13e-29 112
Msa1375470 AT5G61420.2 45.217 115 60 3 11 124 12 124 2.51e-29 112
Msa1375470 AT1G48000.1 47.059 102 53 1 17 118 37 137 2.55e-29 109
Msa1375470 AT1G74430.1 44.348 115 61 3 11 124 12 124 2.81e-29 110
Msa1375470 AT5G07700.1 47.619 105 53 2 11 115 12 114 3.26e-29 111
Msa1375470 AT5G07700.2 47.619 105 53 2 11 115 12 114 3.26e-29 111
Msa1375470 AT3G13890.1 44.628 121 56 3 4 115 5 123 3.78e-29 111
Msa1375470 AT5G62470.1 44.526 137 68 5 11 146 12 141 5.60e-29 110
Msa1375470 AT3G12820.1 49.057 106 52 2 10 115 13 116 7.04e-29 108
Msa1375470 AT2G47190.1 45.872 109 57 2 11 119 20 126 9.66e-29 108
Msa1375470 AT2G47460.1 49.505 101 49 2 11 111 12 110 1.58e-28 110
Msa1375470 AT5G62320.1 46.281 121 55 4 11 123 13 131 2.70e-28 107
Msa1375470 AT1G25340.1 45.631 103 55 1 17 119 23 124 3.80e-28 107
Msa1375470 AT3G62610.1 48.515 101 50 2 11 111 12 110 4.12e-28 108
Msa1375470 AT5G35550.1 45.455 110 58 2 6 115 9 116 5.01e-28 106
Msa1375470 AT1G68320.1 43.750 112 61 2 8 119 16 125 5.52e-28 107
Msa1375470 AT5G14340.1 47.368 114 57 3 11 123 24 135 6.51e-28 106
Msa1375470 AT5G49330.1 49.505 101 49 2 11 111 12 110 6.61e-28 107
Msa1375470 AT4G13480.1 46.087 115 57 2 17 131 11 120 6.80e-28 106
Msa1375470 AT1G66230.1 46.957 115 58 3 11 124 12 124 1.33e-27 105
Msa1375470 AT5G16600.1 46.087 115 59 3 11 124 12 124 3.09e-27 105
Msa1375470 AT3G30210.1 47.059 102 53 1 17 118 32 132 3.77e-27 104
Msa1375470 AT3G24310.1 47.475 99 51 1 17 115 23 120 6.73e-27 103
Msa1375470 AT3G60460.1 45.872 109 56 3 11 118 11 117 1.15e-26 103
Msa1375470 AT3G48920.1 44.545 110 60 1 6 115 12 120 3.74e-26 101
Msa1375470 AT4G22680.1 45.217 115 60 3 11 124 12 124 5.32e-26 101
Msa1375470 AT1G66380.1 42.857 112 61 3 7 117 4 113 8.30e-25 95.1
Msa1375470 AT4G12350.1 45.714 105 55 2 11 115 12 114 1.01e-24 98.6
Msa1375470 AT5G26660.2 45.545 101 53 2 39 138 8 107 1.05e-24 99.0
Msa1375470 AT3G06490.1 46.789 109 56 2 11 119 19 125 1.32e-24 99.0
Msa1375470 AT1G66370.1 42.727 110 60 3 9 117 6 113 1.42e-24 97.1
Msa1375470 AT1G25340.2 43.689 103 52 2 17 119 23 119 1.59e-24 97.8
Msa1375470 AT1G25340.3 43.689 103 52 2 17 119 23 119 1.84e-24 98.2
Msa1375470 AT4G25560.1 45.794 107 56 2 9 115 8 112 2.83e-24 97.1
Msa1375470 AT3G53200.1 45.794 107 56 2 11 117 9 113 3.16e-24 96.3
Msa1375470 AT5G52260.1 48.598 107 53 2 9 115 10 114 3.70e-24 96.7
Msa1375470 AT1G79180.2 37.086 151 58 4 10 125 13 161 5.27e-24 97.4
Msa1375470 AT5G59780.3 40.336 119 69 2 6 124 3 119 7.35e-24 95.1
Msa1375470 AT1G66390.1 41.964 112 62 3 7 117 4 113 1.14e-23 94.7
Msa1375470 AT1G56650.1 38.281 128 68 4 7 125 4 129 1.26e-23 94.7
Msa1375470 AT3G46130.1 44.444 99 54 1 17 115 14 111 2.47e-23 94.4
Msa1375470 AT5G49620.1 44.660 103 56 1 17 119 31 132 4.56e-23 94.4
Msa1375470 AT4G18770.1 41.176 136 72 4 9 138 208 341 6.05e-23 95.5
Msa1375470 AT3G50060.1 43.396 106 58 2 17 122 9 112 2.00e-22 92.4
Msa1375470 AT5G49620.2 39.167 120 52 2 17 119 31 146 9.90e-22 90.9
Msa1375470 AT5G40350.2 51.351 74 35 1 43 116 3 75 2.63e-21 86.7
Msa1375470 AT4G37260.1 44.860 107 56 3 17 122 16 120 3.80e-21 89.4
Msa1375470 AT3G27810.2 52.778 72 33 1 45 116 4 74 7.16e-21 85.9
Msa1375470 AT5G67300.1 47.000 100 50 3 17 115 9 106 1.63e-20 87.4
Msa1375470 AT3G27785.1 40.777 103 58 3 17 118 192 292 1.67e-20 89.0
Msa1375470 AT5G58850.1 43.636 110 59 3 7 116 99 205 1.91e-20 88.6
Msa1375470 AT2G23290.1 45.000 100 52 3 17 115 16 113 2.89e-20 87.0
Msa1375470 AT2G39880.1 39.695 131 75 3 17 145 53 181 3.76e-20 87.4
Msa1375470 AT5G40360.1 41.414 99 56 2 17 115 161 257 7.98e-20 86.3
Msa1375470 AT5G11050.1 39.130 138 77 5 9 143 101 234 1.22e-19 86.3
Msa1375470 AT3G53200.2 52.055 73 34 1 45 117 9 80 1.58e-19 82.8
Msa1375470 AT1G17950.1 39.450 109 62 3 17 123 8 114 5.32e-19 82.4
Msa1375470 AT3G12820.2 55.224 67 29 1 49 115 3 68 6.88e-19 80.9
Msa1375470 AT3G09370.3 36.735 147 88 5 6 150 136 279 1.26e-18 83.6
Msa1375470 AT3G09370.3 37.255 102 61 2 9 110 88 186 8.12e-15 72.8
Msa1375470 AT3G09370.2 36.735 147 88 5 6 150 128 271 1.32e-18 83.6
Msa1375470 AT3G09370.2 37.255 102 61 2 9 110 80 178 6.24e-15 72.8
Msa1375470 AT3G09370.1 36.735 147 88 5 6 150 123 266 1.43e-18 83.6
Msa1375470 AT3G09370.1 37.255 102 61 2 9 110 75 173 6.71e-15 72.8
Msa1375470 AT2G25230.1 37.984 129 71 5 7 128 15 141 2.31e-18 80.5
Msa1375470 AT5G35550.2 52.113 71 33 1 45 115 50 119 3.12e-18 80.5
Msa1375470 AT4G33450.1 36.792 106 65 2 17 122 22 125 8.13e-18 79.3
Msa1375470 AT3G46130.3 48.611 72 36 1 44 115 9 79 2.42e-17 77.4
Msa1375470 AT5G14750.3 43.373 83 41 2 38 115 3 84 2.64e-17 76.3
Msa1375470 AT3G55730.1 41.414 99 56 2 17 115 59 155 2.91e-17 79.3
Msa1375470 AT3G46130.4 49.296 71 35 1 45 115 20 89 5.91e-17 76.6
Msa1375470 AT5G59780.2 45.000 80 43 1 45 124 20 98 6.46e-17 76.3
Msa1375470 AT5G02320.3 38.182 110 65 3 6 115 60 166 6.64e-17 78.6
Msa1375470 AT5G02320.3 36.275 102 62 2 9 110 12 110 2.22e-14 71.2
Msa1375470 AT5G17800.1 38.053 113 64 3 17 125 96 206 6.77e-17 77.8
Msa1375470 AT3G09230.1 37.374 99 60 2 17 115 58 154 7.68e-17 78.2
Msa1375470 AT5G02320.1 38.182 110 65 3 6 115 120 226 8.19e-17 78.6
Msa1375470 AT5G02320.1 36.275 102 62 2 9 110 72 170 2.83e-14 71.2
Msa1375470 AT5G02320.2 38.182 110 65 3 6 115 120 226 8.19e-17 78.6
Msa1375470 AT5G02320.2 36.275 102 62 2 9 110 72 170 2.83e-14 71.2
Msa1375470 AT2G37630.1 39.640 111 64 2 11 119 1 110 1.29e-16 77.4
Msa1375470 AT4G00540.2 36.691 139 76 6 6 139 96 227 1.49e-16 77.4
Msa1375470 AT4G00540.2 33.945 109 64 3 9 110 42 149 3.72e-11 62.0
Msa1375470 AT4G00540.1 36.691 139 76 6 6 139 94 225 1.50e-16 77.4
Msa1375470 AT4G00540.1 33.945 109 64 3 9 110 40 147 3.66e-11 62.0
Msa1375470 AT3G47600.2 46.479 71 37 1 45 115 39 108 1.58e-16 76.6
Msa1375470 AT1G26780.1 37.143 105 63 3 17 120 101 203 1.67e-16 76.3
Msa1375470 AT4G32730.5 38.182 110 65 3 6 115 80 186 1.98e-16 77.4
Msa1375470 AT4G32730.5 35.514 107 57 3 9 110 31 130 5.46e-14 70.5
Msa1375470 AT4G32730.4 38.182 110 65 3 6 115 80 186 1.98e-16 77.4
Msa1375470 AT4G32730.4 35.514 107 57 3 9 110 31 130 5.46e-14 70.5
Msa1375470 AT4G32730.3 38.182 110 65 3 6 115 80 186 1.98e-16 77.4
Msa1375470 AT4G32730.3 35.514 107 57 3 9 110 31 130 5.46e-14 70.5
Msa1375470 AT4G32730.2 38.182 110 65 3 6 115 80 186 1.98e-16 77.4
Msa1375470 AT4G32730.2 35.514 107 57 3 9 110 31 130 5.46e-14 70.5
Msa1375470 AT4G32730.1 38.182 110 65 3 6 115 80 186 2.01e-16 77.4
Msa1375470 AT4G32730.1 35.514 107 57 3 9 110 31 130 5.64e-14 70.5
Msa1375470 AT1G26780.2 37.500 104 62 3 17 119 101 202 2.96e-16 76.3
Msa1375470 AT1G69560.1 37.895 95 57 2 17 111 110 202 3.12e-16 75.9
Msa1375470 AT1G69560.2 37.895 95 57 2 17 111 126 218 3.26e-16 76.3
Msa1375470 AT1G73410.1 34.437 151 89 4 17 159 9 157 4.56e-16 74.3
Msa1375470 AT1G73410.2 33.775 151 90 4 17 159 9 157 4.87e-16 73.6
Msa1375470 AT5G11510.2 34.545 110 69 3 6 115 74 180 2.41e-15 74.3
Msa1375470 AT5G11510.2 36.170 94 59 1 17 110 32 124 1.93e-13 68.9
Msa1375470 AT3G29020.1 38.462 104 59 3 17 117 68 169 2.48e-15 72.4
Msa1375470 AT1G66380.3 45.333 75 39 2 44 117 7 80 2.54e-15 69.3
Msa1375470 AT5G11510.5 34.545 110 69 3 6 115 74 180 2.60e-15 74.3
Msa1375470 AT5G11510.5 36.170 94 59 1 17 110 32 124 2.11e-13 68.6
Msa1375470 AT5G11510.3 34.545 110 69 3 6 115 74 180 2.90e-15 74.3
Msa1375470 AT5G11510.3 36.170 94 59 1 17 110 32 124 2.28e-13 68.6
Msa1375470 AT5G11510.1 34.545 110 69 3 6 115 74 180 2.90e-15 74.3
Msa1375470 AT5G11510.1 36.170 94 59 1 17 110 32 124 2.28e-13 68.6
Msa1375470 AT5G11510.4 34.545 110 69 3 6 115 74 180 2.90e-15 74.3
Msa1375470 AT5G11510.4 36.170 94 59 1 17 110 32 124 2.28e-13 68.6
Msa1375470 AT1G66380.2 44.118 68 37 1 7 74 4 70 5.40e-15 68.6
Msa1375470 AT3G29020.2 38.462 104 59 3 17 117 70 171 6.21e-15 72.0
Msa1375470 AT1G14350.2 37.864 103 62 2 17 119 28 128 3.33e-14 70.9
Msa1375470 AT1G14350.1 37.864 103 62 2 17 119 28 128 3.33e-14 70.9
Msa1375470 AT5G40430.1 37.168 113 64 4 7 115 43 152 7.50e-14 68.6
Msa1375470 AT2G02820.1 36.893 103 63 2 17 119 33 133 8.95e-14 69.7
Msa1375470 AT2G02820.2 36.893 103 63 2 17 119 33 133 9.31e-14 69.7
Msa1375470 AT2G02820.3 36.893 103 63 2 17 119 33 133 1.25e-13 68.6
Msa1375470 AT1G22640.3 51.515 66 30 2 59 123 2 66 3.08e-13 65.9
Msa1375470 AT3G18100.3 39.604 101 52 4 12 109 497 591 1.39e-12 66.2
Msa1375470 AT3G18100.4 39.604 101 52 4 12 109 384 478 1.40e-12 66.2
Msa1375470 AT5G39700.1 37.864 103 62 2 9 111 51 151 1.44e-12 63.9
Msa1375470 AT3G18100.2 39.604 101 52 4 12 109 332 426 1.45e-12 66.2
Msa1375470 AT3G18100.1 39.604 101 52 4 12 109 545 639 1.64e-12 66.2
Msa1375470 AT3G23250.2 47.368 57 29 1 59 115 2 57 2.66e-11 61.2

Find 38 sgRNAs with CRISPR-Local

Find 92 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTTTGAAAACTGCTTATT+TGG 0.060651 tig0019684:-19911 Msa1375470:intergenic
CATCGTTGGTTACTAATAAA+AGG 0.209811 tig0019684:+19203 Msa1375470:CDS
TGATACCTCCTTCCAATTTC+CGG 0.211449 tig0019684:-19296 Msa1375470:intergenic
CTACTTCAACTTTGATTGAT+AGG 0.246409 tig0019684:+19975 Msa1375470:CDS
AAAGTTCTTGATGTCATTAT+CGG 0.301665 tig0019684:-19705 Msa1375470:intergenic
ATAATGACATCAAGAACTTT+TGG 0.313765 tig0019684:+19690 Msa1375470:CDS
TTTGAGTTATGTTCTAAGTT+TGG 0.324176 tig0019684:+19430 Msa1375470:CDS
ATGTCATTATCGGTTCTTCC+AGG 0.362890 tig0019684:-19695 Msa1375470:intergenic
ACTTTGAAAACTGCTTATTT+GGG 0.369164 tig0019684:-19910 Msa1375470:intergenic
TGATTTACAAATTTAACTTC+TGG 0.390627 tig0019684:-19860 Msa1375470:intergenic
CTAAGTTTGGTGAGTTCAAA+TGG 0.403243 tig0019684:+19443 Msa1375470:CDS
TCAACCAGTTCCATGTTGTC+AGG 0.424194 tig0019684:-19776 Msa1375470:intergenic
TCTTCTTCTTCTTTACTAAA+CGG 0.425038 tig0019684:-19400 Msa1375470:intergenic
GGTTGAAGAAAGGAACATTA+TGG 0.458991 tig0019684:+19224 Msa1375470:CDS
CTTCCCTGACAACATGGAAC+TGG 0.459486 tig0019684:+19754 Msa1375470:CDS
AACGGACCCTTCTTTACATC+AGG 0.460974 tig0019684:-19382 Msa1375470:intergenic
AAATATGTTCTTCAATAATG+TGG 0.466264 tig0019684:+19928 Msa1375470:CDS
GACAACATGGAACTGGTTGA+TGG 0.469494 tig0019684:+19761 Msa1375470:CDS
TCTACGACCTGATGTAAAGA+AGG 0.489579 tig0019684:+19375 Msa1375470:CDS
GAGTATTATACCATCTAAAA+CGG 0.511421 tig0019684:-19354 Msa1375470:intergenic
TTATTAGTAACCAACGATGA+AGG 0.514942 tig0019684:-19199 Msa1375470:intergenic
CAGTTCCATGTTGTCAGGGA+AGG 0.525681 tig0019684:-19771 Msa1375470:intergenic
GTCACCCTTCCCTGACAACA+TGG 0.529510 tig0019684:+19748 Msa1375470:CDS
ACTAATAAAAGGTTGAAGAA+AGG 0.530614 tig0019684:+19214 Msa1375470:CDS
AATATGTTCTTCAATAATGT+GGG 0.531232 tig0019684:+19929 Msa1375470:CDS
TAACATCATGCCTTCATCGT+TGG 0.558999 tig0019684:+19189 None:intergenic
GATGGTCTGAAGAGTAGTAA+TGG 0.562995 tig0019684:+19779 Msa1375470:CDS
AGTTCCATGTTGTCAGGGAA+GGG 0.564461 tig0019684:-19770 Msa1375470:intergenic
TGAGTTCAAATGGTCTAAGA+TGG 0.574582 tig0019684:+19453 Msa1375470:CDS
ACATGGAACCGGAAATTGGA+AGG 0.586011 tig0019684:+19288 Msa1375470:CDS
CAACCAGTTCCATGTTGTCA+GGG 0.591829 tig0019684:-19775 Msa1375470:intergenic
ATGGTCTAAGATGGCTCTCG+AGG 0.607145 tig0019684:+19462 Msa1375470:CDS
CTACGACCTGATGTAAAGAA+GGG 0.647996 tig0019684:+19376 Msa1375470:CDS
GAAGGAGGTATCAAAGAACA+CGG 0.666684 tig0019684:+19306 Msa1375470:CDS
AAAAGAAAACATGAAAGACA+TGG 0.669709 tig0019684:+19722 Msa1375470:CDS
AACACGGGACTCGCACACTG+TGG 0.692253 tig0019684:+19322 Msa1375470:CDS
TGGAACCGGAAATTGGAAGG+AGG 0.696666 tig0019684:+19291 Msa1375470:CDS
AAGGAGGTATCAAAGAACAC+GGG 0.739276 tig0019684:+19307 Msa1375470:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAAATTAATGACACAAG+TGG - tig0019684:19630-19649 Msa1375470:intergenic 20.0%
!!! TGATTTACAAATTTAACTTC+TGG - tig0019684:19845-19864 Msa1375470:intergenic 20.0%
!! AAATATGTTCTTCAATAATG+TGG + tig0019684:19928-19947 Msa1375470:CDS 20.0%
!! AATATGTTCTTCAATAATGT+GGG + tig0019684:19929-19948 Msa1375470:CDS 20.0%
!! ATTAAAATTAATGACACAAG+TGG - tig0019684:19630-19649 Msa1375470:intergenic 20.0%
!!! TGATTTACAAATTTAACTTC+TGG - tig0019684:19845-19864 Msa1375470:intergenic 20.0%
!! AAATATGTTCTTCAATAATG+TGG + tig0019684:19928-19947 Msa1375470:CDS 20.0%
!! AATATGTTCTTCAATAATGT+GGG + tig0019684:19929-19948 Msa1375470:CDS 20.0%
! ACTAATAAAAGGTTGAAGAA+AGG + tig0019684:19214-19233 Msa1375470:CDS 25.0%
! AAAGCATATGTTGAAAAACA+TGG + tig0019684:19271-19290 Msa1375470:CDS 25.0%
! GAGTATTATACCATCTAAAA+CGG - tig0019684:19357-19376 Msa1375470:intergenic 25.0%
! TCTTCTTCTTCTTTACTAAA+CGG - tig0019684:19403-19422 Msa1375470:intergenic 25.0%
!! TTTGAGTTATGTTCTAAGTT+TGG + tig0019684:19430-19449 Msa1375470:CDS 25.0%
! AACATGTGATCTAATGAATA+TGG - tig0019684:19565-19584 Msa1375470:intergenic 25.0%
! AAAGTTCTTGATGTCATTAT+CGG - tig0019684:19690-19709 Msa1375470:intergenic 25.0%
!! ATAATGACATCAAGAACTTT+TGG + tig0019684:19690-19709 Msa1375470:CDS 25.0%
! AAAAGAAAACATGAAAGACA+TGG + tig0019684:19722-19741 Msa1375470:CDS 25.0%
!! GTAGTAATGGAAAAAGAATA+AGG + tig0019684:19792-19811 Msa1375470:CDS 25.0%
!! ACTTTGAAAACTGCTTATTT+GGG - tig0019684:19895-19914 Msa1375470:intergenic 25.0%
!! AACTTTGAAAACTGCTTATT+TGG - tig0019684:19896-19915 Msa1375470:intergenic 25.0%
! ACTAATAAAAGGTTGAAGAA+AGG + tig0019684:19214-19233 Msa1375470:CDS 25.0%
! AAAGCATATGTTGAAAAACA+TGG + tig0019684:19271-19290 Msa1375470:CDS 25.0%
! GAGTATTATACCATCTAAAA+CGG - tig0019684:19357-19376 Msa1375470:intergenic 25.0%
! TCTTCTTCTTCTTTACTAAA+CGG - tig0019684:19403-19422 Msa1375470:intergenic 25.0%
!! TTTGAGTTATGTTCTAAGTT+TGG + tig0019684:19430-19449 Msa1375470:CDS 25.0%
! AACATGTGATCTAATGAATA+TGG - tig0019684:19565-19584 Msa1375470:intergenic 25.0%
! AAAGTTCTTGATGTCATTAT+CGG - tig0019684:19690-19709 Msa1375470:intergenic 25.0%
!! ATAATGACATCAAGAACTTT+TGG + tig0019684:19690-19709 Msa1375470:CDS 25.0%
! AAAAGAAAACATGAAAGACA+TGG + tig0019684:19722-19741 Msa1375470:CDS 25.0%
!! GTAGTAATGGAAAAAGAATA+AGG + tig0019684:19792-19811 Msa1375470:CDS 25.0%
!! ACTTTGAAAACTGCTTATTT+GGG - tig0019684:19895-19914 Msa1375470:intergenic 25.0%
!! AACTTTGAAAACTGCTTATT+TGG - tig0019684:19896-19915 Msa1375470:intergenic 25.0%
TTATTAGTAACCAACGATGA+AGG - tig0019684:19202-19221 None:intergenic 30.0%
! CATCGTTGGTTACTAATAAA+AGG + tig0019684:19203-19222 Msa1375470:CDS 30.0%
TATGTTGAAAAACATGGAAC+CGG + tig0019684:19277-19296 Msa1375470:CDS 30.0%
CTACTTCAACTTTGATTGAT+AGG + tig0019684:19975-19994 Msa1375470:CDS 30.0%
TTATTAGTAACCAACGATGA+AGG - tig0019684:19202-19221 Msa1375470:intergenic 30.0%
! CATCGTTGGTTACTAATAAA+AGG + tig0019684:19203-19222 Msa1375470:CDS 30.0%
TATGTTGAAAAACATGGAAC+CGG + tig0019684:19277-19296 Msa1375470:CDS 30.0%
CTACTTCAACTTTGATTGAT+AGG + tig0019684:19975-19994 Msa1375470:CDS 30.0%
GGTTGAAGAAAGGAACATTA+TGG + tig0019684:19224-19243 Msa1375470:CDS 35.0%
AAAAACATGGAACCGGAAAT+TGG + tig0019684:19284-19303 Msa1375470:CDS 35.0%
! CTAAGTTTGGTGAGTTCAAA+TGG + tig0019684:19443-19462 Msa1375470:CDS 35.0%
TGAGTTCAAATGGTCTAAGA+TGG + tig0019684:19453-19472 Msa1375470:CDS 35.0%
! TTCTTTTTGTTACAGATGCC+TGG + tig0019684:19659-19678 Msa1375470:intron 35.0%
GGTTGAAGAAAGGAACATTA+TGG + tig0019684:19224-19243 Msa1375470:CDS 35.0%
AAAAACATGGAACCGGAAAT+TGG + tig0019684:19284-19303 Msa1375470:CDS 35.0%
! CTAAGTTTGGTGAGTTCAAA+TGG + tig0019684:19443-19462 Msa1375470:CDS 35.0%
TGAGTTCAAATGGTCTAAGA+TGG + tig0019684:19453-19472 Msa1375470:CDS 35.0%
! TTCTTTTTGTTACAGATGCC+TGG + tig0019684:19659-19678 Msa1375470:intron 35.0%
TGATACCTCCTTCCAATTTC+CGG - tig0019684:19299-19318 Msa1375470:intergenic 40.0%
!! GAAGGAGGTATCAAAGAACA+CGG + tig0019684:19306-19325 Msa1375470:CDS 40.0%
!! AAGGAGGTATCAAAGAACAC+GGG + tig0019684:19307-19326 Msa1375470:CDS 40.0%
!!! GAAGAAGTTGCCGTTTTAGA+TGG + tig0019684:19344-19363 Msa1375470:CDS 40.0%
TCTACGACCTGATGTAAAGA+AGG + tig0019684:19375-19394 Msa1375470:CDS 40.0%
CTACGACCTGATGTAAAGAA+GGG + tig0019684:19376-19395 Msa1375470:CDS 40.0%
AATATGGCTGCAGTTGTAGA+AGG - tig0019684:19549-19568 Msa1375470:intergenic 40.0%
!! ATGTCATTATCGGTTCTTCC+AGG - tig0019684:19680-19699 Msa1375470:intergenic 40.0%
GATGGTCTGAAGAGTAGTAA+TGG + tig0019684:19779-19798 Msa1375470:CDS 40.0%
TGATACCTCCTTCCAATTTC+CGG - tig0019684:19299-19318 Msa1375470:intergenic 40.0%
!! GAAGGAGGTATCAAAGAACA+CGG + tig0019684:19306-19325 Msa1375470:CDS 40.0%
!! AAGGAGGTATCAAAGAACAC+GGG + tig0019684:19307-19326 Msa1375470:CDS 40.0%
!!! GAAGAAGTTGCCGTTTTAGA+TGG + tig0019684:19344-19363 Msa1375470:CDS 40.0%
TCTACGACCTGATGTAAAGA+AGG + tig0019684:19375-19394 Msa1375470:CDS 40.0%
CTACGACCTGATGTAAAGAA+GGG + tig0019684:19376-19395 Msa1375470:CDS 40.0%
AATATGGCTGCAGTTGTAGA+AGG - tig0019684:19549-19568 Msa1375470:intergenic 40.0%
!! ATGTCATTATCGGTTCTTCC+AGG - tig0019684:19680-19699 Msa1375470:intergenic 40.0%
GATGGTCTGAAGAGTAGTAA+TGG + tig0019684:19779-19798 Msa1375470:CDS 40.0%
ACATGGAACCGGAAATTGGA+AGG + tig0019684:19288-19307 Msa1375470:CDS 45.0%
AACGGACCCTTCTTTACATC+AGG - tig0019684:19385-19404 Msa1375470:intergenic 45.0%
AGTTCCATGTTGTCAGGGAA+GGG - tig0019684:19755-19774 Msa1375470:intergenic 45.0%
CAACCAGTTCCATGTTGTCA+GGG - tig0019684:19760-19779 Msa1375470:intergenic 45.0%
TCAACCAGTTCCATGTTGTC+AGG - tig0019684:19761-19780 Msa1375470:intergenic 45.0%
GACAACATGGAACTGGTTGA+TGG + tig0019684:19761-19780 Msa1375470:CDS 45.0%
ACATGGAACCGGAAATTGGA+AGG + tig0019684:19288-19307 Msa1375470:CDS 45.0%
AACGGACCCTTCTTTACATC+AGG - tig0019684:19385-19404 Msa1375470:intergenic 45.0%
AGTTCCATGTTGTCAGGGAA+GGG - tig0019684:19755-19774 Msa1375470:intergenic 45.0%
CAACCAGTTCCATGTTGTCA+GGG - tig0019684:19760-19779 Msa1375470:intergenic 45.0%
TCAACCAGTTCCATGTTGTC+AGG - tig0019684:19761-19780 Msa1375470:intergenic 45.0%
GACAACATGGAACTGGTTGA+TGG + tig0019684:19761-19780 Msa1375470:CDS 45.0%
TGGAACCGGAAATTGGAAGG+AGG + tig0019684:19291-19310 Msa1375470:CDS 50.0%
! ATGGTCTAAGATGGCTCTCG+AGG + tig0019684:19462-19481 Msa1375470:CDS 50.0%
CAGTTCCATGTTGTCAGGGA+AGG - tig0019684:19756-19775 Msa1375470:intergenic 50.0%
CTTCCCTGACAACATGGAAC+TGG + tig0019684:19754-19773 Msa1375470:CDS 50.0%
TGGAACCGGAAATTGGAAGG+AGG + tig0019684:19291-19310 Msa1375470:CDS 50.0%
! ATGGTCTAAGATGGCTCTCG+AGG + tig0019684:19462-19481 Msa1375470:CDS 50.0%
CAGTTCCATGTTGTCAGGGA+AGG - tig0019684:19756-19775 Msa1375470:intergenic 50.0%
CTTCCCTGACAACATGGAAC+TGG + tig0019684:19754-19773 Msa1375470:CDS 50.0%
GTCACCCTTCCCTGACAACA+TGG + tig0019684:19748-19767 Msa1375470:CDS 55.0%
GTCACCCTTCCCTGACAACA+TGG + tig0019684:19748-19767 Msa1375470:CDS 55.0%
AACACGGGACTCGCACACTG+TGG + tig0019684:19322-19341 Msa1375470:CDS 60.0%
AACACGGGACTCGCACACTG+TGG + tig0019684:19322-19341 Msa1375470:CDS 60.0%
Chromosome Type Strat End Strand Name
tig0019684 gene 19196 20000 19196 ID=Msa1375470;Name=Msa1375470
tig0019684 mRNA 19196 20000 19196 ID=Msa1375470-mRNA-1;Parent=Msa1375470;Name=Msa1375470-mRNA-1;_AED=0.02;_eAED=0.04;_QI=0|0|0|1|1|1|2|0|204
tig0019684 exon 19196 19483 19196 ID=Msa1375470-mRNA-1:exon:4542;Parent=Msa1375470-mRNA-1
tig0019684 exon 19674 20000 19674 ID=Msa1375470-mRNA-1:exon:4543;Parent=Msa1375470-mRNA-1
tig0019684 CDS 19196 19483 19196 ID=Msa1375470-mRNA-1:cds;Parent=Msa1375470-mRNA-1
tig0019684 CDS 19674 20000 19674 ID=Msa1375470-mRNA-1:cds;Parent=Msa1375470-mRNA-1
Gene Sequence

>Msa1375470

ATGCCTTCATCGTTGGTTACTAATAAAAGGTTGAAGAAAGGAACATTATGGTCAGAAGAAGAAGATGAAATATTAAAAGCATATGTTGAAAAACATGGAACCGGAAATTGGAAGGAGGTATCAAAGAACACGGGACTCGCACACTGTGGAAGAAGTTGCCGTTTTAGATGGTATAATACTCTACGACCTGATGTAAAGAAGGGTCCGTTTAGTAAAGAAGAAGAAGAAAAATTCTTTGAGTTATGTTCTAAGTTTGGTGAGTTCAAATGGTCTAAGATGGCTCTCGAGATGCCTGGAAGAACCGATAATGACATCAAGAACTTTTGGAATGCAAGAAAAAGAAAACATGAAAGACATGGCTTGTCACCCTTCCCTGACAACATGGAACTGGTTGATGGTCTGAAGAGTAGTAATGGAAAAAGAATAAGGAATTCACAAGAAAACAAATTTAAGATACCAGAAGTTAAATTTGTAAATCAAATTCTGCATACAAACTTGTCTGATCTCCCAAATAAGCAGTTTTCAAAGTTGATTGATGATTCAAATATGTTCTTCAATAATGTGGGAAGTACTTCTACAAGCAATCATACTACTTCAACTTTGATTGATAGGTGA
Protein sequence

>Msa1375470

MPSSLVTNKRLKKGTLWSEEEDEILKAYVEKHGTGNWKEVSKNTGLAHCGRSCRFRWYNTLRPDVKKGPFSKEEEEKFFELCSKFGEFKWSKMALEMPGRTDNDIKNFWNARKRKHERHGLSPFPDNMELVDGLKSSNGKRIRNSQENKFKIPEVKFVNQILHTNLSDLPNKQFSKLIDDSNMFFNNVGSTSTSNHTTSTLIDR*