AlfalfaGEDB | Msa1375470

M. sativa cultivar zhongmu-4 / Msa1375470

KEGG: K09422
GO: GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF13921.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1375470	KEH43185.1	87.317	205	13	3	1	203	1	194	2.31e-109	321

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1375470	sp\|Q94FL7\|MY120_ARATH	53.390	118	53	2	11	128	26	141	2.18e-38	141

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1375470	A0A072VYM8	87.317	205	13	3	1	203	1	194	1.10e-109	321

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TFs/TRs:

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Gene ID	Type	Classification
Msa1375470	TF	MYB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1375470	MtrunA17_Chr5g0441131	72.165	194	35	3	12	204	10	185	3.06e-85	249
Msa1375470	MtrunA17_Chr5g0440781	63.731	193	54	5	12	204	13	189	2.82e-77	229
Msa1375470	MtrunA17_Chr5g0440761	63.351	191	61	4	12	202	13	194	3.10e-77	232
Msa1375470	MtrunA17_Chr5g0441141	63.351	191	61	4	12	202	13	194	1.37e-76	231
Msa1375470	MtrunA17_Chr1g0193901	91.753	97	8	0	1	97	1	97	1.14e-49	157
Msa1375470	MtrunA17_Chr1g0193891	91.753	97	8	0	1	97	1	97	1.14e-49	157
Msa1375470	MtrunA17_Chr1g0193871	91.753	97	8	0	1	97	1	97	1.14e-49	157
Msa1375470	MtrunA17_Chr1g0193881	91.753	97	8	0	1	97	1	97	1.14e-49	157
Msa1375470	MtrunA17_Chr1g0154031	46.512	172	83	5	11	178	76	242	3.22e-41	144
Msa1375470	MtrunA17_Chr1g0192411	45.026	191	97	5	10	194	11	199	5.63e-40	140

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1375470	AT2G26960.1	47.170	159	72	5	9	157	18	174	3.79e-40	142
Msa1375470	AT5G55020.1	53.390	118	53	2	11	128	26	141	2.21e-39	141
Msa1375470	AT2G32460.2	43.750	160	79	3	6	165	1	149	2.60e-39	140
Msa1375470	AT2G32460.1	42.945	163	82	3	3	165	10	161	3.32e-39	140
Msa1375470	AT5G06100.1	54.167	120	53	2	11	130	32	149	3.46e-39	139
Msa1375470	AT3G11440.2	53.279	122	55	2	11	132	41	160	5.51e-39	139
Msa1375470	AT5G06100.5	54.167	120	53	2	11	130	32	149	7.86e-39	140
Msa1375470	AT5G06100.2	54.167	120	53	2	11	130	32	149	7.86e-39	140
Msa1375470	AT5G06100.3	54.167	120	53	2	11	130	32	149	7.86e-39	140
Msa1375470	AT5G06100.4	54.167	120	53	2	11	130	32	149	7.86e-39	140

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Find 38 sgRNAs with CRISPR-Local

Find 92 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAAACATGAAAGACA+TGG	0.669709	tig0019684:+19722	Msa1375470:CDS
AAAGTTCTTGATGTCATTAT+CGG	0.301665	tig0019684:-19705	Msa1375470:intergenic
AAATATGTTCTTCAATAATG+TGG	0.466264	tig0019684:+19928	Msa1375470:CDS
AACACGGGACTCGCACACTG+TGG	0.692253	tig0019684:+19322	Msa1375470:CDS
AACGGACCCTTCTTTACATC+AGG	0.460974	tig0019684:-19382	Msa1375470:intergenic
AACTTTGAAAACTGCTTATT+TGG	0.060651	tig0019684:-19911	Msa1375470:intergenic
AAGGAGGTATCAAAGAACAC+GGG	0.739276	tig0019684:+19307	Msa1375470:CDS
AATATGTTCTTCAATAATGT+GGG	0.531232	tig0019684:+19929	Msa1375470:CDS
ACATGGAACCGGAAATTGGA+AGG	0.586011	tig0019684:+19288	Msa1375470:CDS
ACTAATAAAAGGTTGAAGAA+AGG	0.530614	tig0019684:+19214	Msa1375470:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTATTAGTAACCAACGATGA+AGG	-	tig0019684:19202-19221	None:intergenic	30.0%
TATGTTGAAAAACATGGAAC+CGG	+	tig0019684:19277-19296	Msa1375470:CDS	30.0%
CTACTTCAACTTTGATTGAT+AGG	+	tig0019684:19975-19994	Msa1375470:CDS	30.0%
TTATTAGTAACCAACGATGA+AGG	-	tig0019684:19202-19221	Msa1375470:intergenic	30.0%
TATGTTGAAAAACATGGAAC+CGG	+	tig0019684:19277-19296	Msa1375470:CDS	30.0%
CTACTTCAACTTTGATTGAT+AGG	+	tig0019684:19975-19994	Msa1375470:CDS	30.0%
GGTTGAAGAAAGGAACATTA+TGG	+	tig0019684:19224-19243	Msa1375470:CDS	35.0%
AAAAACATGGAACCGGAAAT+TGG	+	tig0019684:19284-19303	Msa1375470:CDS	35.0%
TGAGTTCAAATGGTCTAAGA+TGG	+	tig0019684:19453-19472	Msa1375470:CDS	35.0%
GGTTGAAGAAAGGAACATTA+TGG	+	tig0019684:19224-19243	Msa1375470:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0019684	gene	19196	20000	19196	ID=Msa1375470;Name=Msa1375470
tig0019684	mRNA	19196	20000	19196	ID=Msa1375470-mRNA-1;Parent=Msa1375470;Name=Msa1375470-mRNA-1;_AED=0.02;_eAED=0.04;_QI=0\|0\|0\|1\|1\|1\|2\|0\|204
tig0019684	exon	19196	19483	19196	ID=Msa1375470-mRNA-1:exon:4542;Parent=Msa1375470-mRNA-1
tig0019684	exon	19674	20000	19674	ID=Msa1375470-mRNA-1:exon:4543;Parent=Msa1375470-mRNA-1
tig0019684	CDS	19196	19483	19196	ID=Msa1375470-mRNA-1:cds;Parent=Msa1375470-mRNA-1
tig0019684	CDS	19674	20000	19674	ID=Msa1375470-mRNA-1:cds;Parent=Msa1375470-mRNA-1

Gene Sequence

>Msa1375470

ATGCCTTCATCGTTGGTTACTAATAAAAGGTTGAAGAAAGGAACATTATGGTCAGAAGAAGAAGATGAAATATTAAAAGCATATGTTGAAAAACATGGAACCGGAAATTGGAAGGAGGTATCAAAGAACACGGGACTCGCACACTGTGGAAGAAGTTGCCGTTTTAGATGGTATAATACTCTACGACCTGATGTAAAGAAGGGTCCGTTTAGTAAAGAAGAAGAAGAAAAATTCTTTGAGTTATGTTCTAAGTTTGGTGAGTTCAAATGGTCTAAGATGGCTCTCGAGATGCCTGGAAGAACCGATAATGACATCAAGAACTTTTGGAATGCAAGAAAAAGAAAACATGAAAGACATGGCTTGTCACCCTTCCCTGACAACATGGAACTGGTTGATGGTCTGAAGAGTAGTAATGGAAAAAGAATAAGGAATTCACAAGAAAACAAATTTAAGATACCAGAAGTTAAATTTGTAAATCAAATTCTGCATACAAACTTGTCTGATCTCCCAAATAAGCAGTTTTCAAAGTTGATTGATGATTCAAATATGTTCTTCAATAATGTGGGAAGTACTTCTACAAGCAATCATACTACTTCAACTTTGATTGATAGGTGA

Protein sequence

>Msa1375470

MPSSLVTNKRLKKGTLWSEEEDEILKAYVEKHGTGNWKEVSKNTGLAHCGRSCRFRWYNTLRPDVKKGPFSKEEEEKFFELCSKFGEFKWSKMALEMPGRTDNDIKNFWNARKRKHERHGLSPFPDNMELVDGLKSSNGKRIRNSQENKFKIPEVKFVNQILHTNLSDLPNKQFSKLIDDSNMFFNNVGSTSTSNHTTSTLIDR*